Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004170 | sp|Q8LE10|HA22I_ARATH | 51.829 | 328 | 120 | 6 | 74 | 399 | 1 | 292 | 2.19e-94 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004170 | Msa0102300 | 0.952443 | 2.395069e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004170 | MtrunA17_Chr1g0156501 | 93.235 | 340 | 13 | 1 | 74 | 403 | 1 | 340 | 0.0 | 571 |
| Msa0004170 | MtrunA17_Chr3g0142571 | 59.215 | 331 | 87 | 6 | 74 | 403 | 1 | 284 | 1.53e-117 | 343 |
| Msa0004170 | MtrunA17_Chr1g0177871 | 44.211 | 190 | 87 | 2 | 74 | 263 | 1 | 171 | 5.28e-56 | 185 |
| Msa0004170 | MtrunA17_Chr7g0267131 | 50.345 | 145 | 72 | 0 | 74 | 218 | 1 | 145 | 1.09e-53 | 176 |
| Msa0004170 | MtrunA17_Chr5g0403731 | 32.632 | 95 | 62 | 1 | 88 | 182 | 37 | 129 | 3.65e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004170 | AT5G42560.1 | 51.829 | 328 | 120 | 6 | 74 | 399 | 1 | 292 | 2.23e-95 | 288 |
| Msa0004170 | AT5G42560.3 | 50.949 | 316 | 117 | 6 | 86 | 399 | 2 | 281 | 5.48e-89 | 271 |
| Msa0004170 | AT5G42560.2 | 50.949 | 316 | 117 | 6 | 86 | 399 | 2 | 281 | 5.48e-89 | 271 |
| Msa0004170 | AT1G19950.1 | 47.059 | 340 | 140 | 6 | 74 | 401 | 1 | 312 | 6.68e-89 | 272 |
| Msa0004170 | AT1G75700.1 | 64.103 | 156 | 56 | 0 | 74 | 229 | 1 | 156 | 1.83e-77 | 238 |
| Msa0004170 | AT1G75700.2 | 64.103 | 156 | 56 | 0 | 74 | 229 | 1 | 156 | 1.83e-77 | 238 |
| Msa0004170 | AT1G75700.3 | 54.054 | 185 | 56 | 1 | 74 | 229 | 1 | 185 | 5.65e-71 | 222 |
| Msa0004170 | AT2G36020.1 | 50.955 | 157 | 77 | 0 | 74 | 230 | 1 | 157 | 5.91e-58 | 190 |
| Msa0004170 | AT4G36720.1 | 29.032 | 93 | 64 | 2 | 88 | 180 | 45 | 135 | 1.93e-11 | 63.5 |
Find 113 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGCTCCGATCAATTTC+TGG | 0.157517 | 1_1:-6640920 | None:intergenic |
| GGAAGTAAAAGAGGAGTTAT+TGG | 0.203411 | 1_1:+6641942 | Msa0004170:CDS |
| TCCTCTTCAGCAACTGAAAA+TGG | 0.204563 | 1_1:+6642225 | Msa0004170:CDS |
| CAGATGAAGGATTAGACTTC+TGG | 0.208821 | 1_1:-6642134 | None:intergenic |
| AATCGAAGCTGTTCAATTTC+CGG | 0.211353 | 1_1:-6640432 | None:intergenic |
| CCGAATACTTTCTTCCATTC+TGG | 0.228086 | 1_1:-6642271 | None:intergenic |
| ATAATTATATACCTTTGTTT+TGG | 0.244409 | 1_1:-6640767 | None:intergenic |
| AAATTGAACAGCTTCGATTT+TGG | 0.251242 | 1_1:+6640436 | Msa0004170:CDS |
| GTCGATGTTTAGCCGGAAAT+AGG | 0.254113 | 1_1:+6642351 | Msa0004170:three_prime_UTR |
| AAAGTAGCCCCTCCTGTTGC+AGG | 0.293457 | 1_1:+6641982 | Msa0004170:CDS |
| GGCGGTGGCGGTGGCGGTGG+TGG | 0.297929 | 1_1:-6639583 | None:intergenic |
| TGGTCCAACTACCCTATTTC+CGG | 0.300661 | 1_1:-6642363 | None:intergenic |
| GCTGTTGATTCAATATTCTT+TGG | 0.315816 | 1_1:-6642195 | None:intergenic |
| CGTTACATAACGCTTTAAAA+TGG | 0.322148 | 1_1:-6642383 | None:intergenic |
| GCGGCTGGTTGGCCCTTGGC+AGG | 0.329188 | 1_1:-6641850 | None:intergenic |
| ACAATATTGCATACCAATAC+TGG | 0.331896 | 1_1:-6640461 | None:intergenic |
| CCAGAATGGAAGAAAGTATT+CGG | 0.341573 | 1_1:+6642271 | Msa0004170:CDS |
| GGTTGGCCCTTGGCAGGTGC+AGG | 0.343393 | 1_1:-6641844 | None:intergenic |
| GGTGGCGGTGGCGGTGGTGG+AGG | 0.345256 | 1_1:-6639580 | None:intergenic |
| AAGCAGCTACAGGAGGCTTC+TGG | 0.363846 | 1_1:-6642044 | None:intergenic |
| ATGATAATTGTTTCAGATGA+AGG | 0.367093 | 1_1:-6642147 | None:intergenic |
| ATTGAAAAGCAACAATTTAA+CGG | 0.368642 | 1_1:+6639465 | Msa0004170:intron |
| TCTGGCGGTGGCGGTGGCGG+TGG | 0.369667 | 1_1:-6639586 | None:intergenic |
| AAAGTAACAGAAGAAGGTTT+TGG | 0.372978 | 1_1:-6639495 | None:intergenic |
| TTTCAGGGATACAGAATGAT+AGG | 0.376443 | 1_1:+6640121 | Msa0004170:intron |
| AAAGCGTTATGTAACGGTTT+CGG | 0.381129 | 1_1:+6642390 | Msa0004170:three_prime_UTR |
| GCAACAGGAGGGGCTACTTT+AGG | 0.385854 | 1_1:-6641979 | None:intergenic |
| AACCAGCTATAGGAGGCTTC+TGG | 0.393471 | 1_1:-6642074 | None:intergenic |
| GAATCTGGCGGTGGCGGTGG+CGG | 0.396709 | 1_1:-6639589 | None:intergenic |
| TTTACGAGATGAAGTGAATC+TGG | 0.399770 | 1_1:-6639604 | None:intergenic |
| TCGATGTTTAGCCGGAAATA+GGG | 0.403077 | 1_1:+6642352 | Msa0004170:three_prime_UTR |
| CTACTGGGTTCCTACTGATC+TGG | 0.407544 | 1_1:-6642319 | None:intergenic |
| TGAGTAGTTAAACCAGCTAT+AGG | 0.410981 | 1_1:-6642084 | None:intergenic |
| ATTGCAGCAACGACCGGGAC+CGG | 0.424962 | 1_1:+6641804 | Msa0004170:intron |
| ATGACAGTGTGTGAGAGATT+TGG | 0.431821 | 1_1:+6640585 | Msa0004170:CDS |
| TGCAACATATGGTTTAAAGA+AGG | 0.441591 | 1_1:-6640888 | None:intergenic |
| AATGTATTGTGAAGCTAAGT+TGG | 0.443796 | 1_1:+6640720 | Msa0004170:CDS |
| TGTTTGTTTAAACCTGCAAC+AGG | 0.458598 | 1_1:-6641994 | None:intergenic |
| TGGTTATTTAAAGCAGCTAC+AGG | 0.459504 | 1_1:-6642054 | None:intergenic |
| AGCAGCGGCTGGTTGGCCCT+TGG | 0.466244 | 1_1:-6641854 | None:intergenic |
| AGTGAATCTGGCGGTGGCGG+TGG | 0.466820 | 1_1:-6639592 | None:intergenic |
| AGATGAAGGATTAGACTTCT+GGG | 0.473622 | 1_1:-6642133 | None:intergenic |
| TGTGGTTCTGTAGCAGCGGC+TGG | 0.474161 | 1_1:-6641865 | None:intergenic |
| TGATAGGATCCTTTCTTACC+TGG | 0.479771 | 1_1:+6640137 | Msa0004170:CDS |
| TCTCAAAGAGCTGTTAGTTA+CGG | 0.482414 | 1_1:+6640983 | Msa0004170:CDS |
| CACAAGCGCCCAGGTAAGAA+AGG | 0.483813 | 1_1:-6640146 | None:intergenic |
| GTTCCAAAAGGAAGTAAAAG+AGG | 0.484315 | 1_1:+6641933 | Msa0004170:CDS |
| CAGAATGGAAGAAAGTATTC+GGG | 0.484520 | 1_1:+6642272 | Msa0004170:CDS |
| AACCAGAAGCCTCCTATAGC+TGG | 0.489915 | 1_1:+6642072 | Msa0004170:CDS |
| ACTTAGCTTCACAATACATT+GGG | 0.490800 | 1_1:-6640717 | None:intergenic |
| TTAGCCGGAAATAGGGTAGT+TGG | 0.493270 | 1_1:+6642359 | Msa0004170:three_prime_UTR |
| CTTGAAATTGCAGCAACGAC+CGG | 0.494610 | 1_1:+6641798 | Msa0004170:intron |
| AGGGGAAAAGTAACAGAAGA+AGG | 0.494785 | 1_1:-6639501 | None:intergenic |
| CTTGAAGTTGTGCTAGAGGC+AGG | 0.497182 | 1_1:-6641907 | None:intergenic |
| GTTCTGTAGCAGCGGCTGGT+TGG | 0.499552 | 1_1:-6641861 | None:intergenic |
| ATCGGAGCTTGTCGGAACTA+AGG | 0.500483 | 1_1:+6640930 | Msa0004170:CDS |
| TGGCGGTGGTGGAGGAAGAT+CGG | 0.502486 | 1_1:-6639572 | None:intergenic |
| CAAAATTGTCGATGTTTAGC+CGG | 0.503945 | 1_1:+6642344 | Msa0004170:three_prime_UTR |
| TTGTGCTAGAGGCAGGAGAC+GGG | 0.507659 | 1_1:-6641900 | None:intergenic |
| TGTCTGATATCAAATGCATA+TGG | 0.508198 | 1_1:+6635889 | Msa0004170:CDS |
| CATCGGCTCCTCTGTATAGC+AGG | 0.511672 | 1_1:+6642528 | Msa0004170:three_prime_UTR |
| ACCTGAGCGGACTGAGGTGC+TGG | 0.512203 | 1_1:-6641055 | None:intergenic |
| AATGTTGTTGTTGTTGATGT+CGG | 0.517313 | 1_1:-6639535 | None:intergenic |
| TCGTAAACCTGCACCTGCCA+AGG | 0.519991 | 1_1:+6641837 | Msa0004170:CDS |
| AAATGGAAAATCTCTTGTAA+AGG | 0.521953 | 1_1:+6642242 | Msa0004170:CDS |
| AACTTAGCTTCACAATACAT+TGG | 0.528637 | 1_1:-6640718 | None:intergenic |
| AACTTCAAGTCAGTTCCAAA+AGG | 0.529032 | 1_1:+6641921 | Msa0004170:CDS |
| GGGGCTACTTTAGGAGCTTG+TGG | 0.533157 | 1_1:-6641970 | None:intergenic |
| ACCAGCACCTCAGTCCGCTC+AGG | 0.534486 | 1_1:+6641054 | Msa0004170:CDS |
| TTGAAATTGCAGCAACGACC+GGG | 0.537573 | 1_1:+6641799 | Msa0004170:intron |
| ATAGCATTCATACGCTGGAT+AGG | 0.541233 | 1_1:-6640388 | None:intergenic |
| TGAAGTGAATCTGGCGGTGG+CGG | 0.542417 | 1_1:-6639595 | None:intergenic |
| GATGTCGGTGAGAGATGAAA+GGG | 0.545308 | 1_1:-6639520 | None:intergenic |
| TTGCAGCAACGACCGGGACC+GGG | 0.545537 | 1_1:+6641805 | Msa0004170:intron |
| GATGGGATGGATATTTGCAT+CGG | 0.545657 | 1_1:+6642511 | Msa0004170:three_prime_UTR |
| AGAAAGTATTCGGGTTACAC+AGG | 0.549384 | 1_1:+6642281 | Msa0004170:CDS |
| TGTAAAGGATGAGACCAGAA+TGG | 0.564274 | 1_1:+6642257 | Msa0004170:CDS |
| AGGAAGATCGGCGACGGCAA+CGG | 0.564309 | 1_1:-6639560 | None:intergenic |
| GTTGTGCTAGAGGCAGGAGA+CGG | 0.564317 | 1_1:-6641901 | None:intergenic |
| ACTTTATAGCATTCATACGC+TGG | 0.570495 | 1_1:-6640393 | None:intergenic |
| AGTAGTTGAAAAGAATAAGC+CGG | 0.571678 | 1_1:+6640413 | Msa0004170:CDS |
| TGTTTAAACCTGCAACAGGA+GGG | 0.572742 | 1_1:-6641990 | None:intergenic |
| CGAACTCTCACACCCGGTCC+CGG | 0.573418 | 1_1:-6641817 | None:intergenic |
| GTTTAAACCTGCAACAGGAG+GGG | 0.575918 | 1_1:-6641989 | None:intergenic |
| CGTAAACCTGCACCTGCCAA+GGG | 0.577276 | 1_1:+6641838 | Msa0004170:CDS |
| AACATGAGCCAGAAATTGAT+CGG | 0.579657 | 1_1:+6640912 | Msa0004170:CDS |
| TCGGAACTAAGGACAAGGGC+GGG | 0.580754 | 1_1:+6640941 | Msa0004170:CDS |
| TTGTTTAAACCTGCAACAGG+AGG | 0.583194 | 1_1:-6641991 | None:intergenic |
| GTTATTTAAAGCAGCTACAG+AGG | 0.587763 | 1_1:-6642022 | None:intergenic |
| AATATGAATTTGTCTAGGCA+CGG | 0.588086 | 1_1:+6642445 | Msa0004170:three_prime_UTR |
| GATAGGATCCTTTCTTACCT+GGG | 0.588549 | 1_1:+6640138 | Msa0004170:CDS |
| AGATGAAGTGAATCTGGCGG+TGG | 0.595755 | 1_1:-6639598 | None:intergenic |
| AACTTGTGGTTCTGTAGCAG+CGG | 0.597787 | 1_1:-6641869 | None:intergenic |
| GTAGTTAAACCAGCTATAGG+AGG | 0.599048 | 1_1:-6642081 | None:intergenic |
| TGATGTCGGTGAGAGATGAA+AGG | 0.607271 | 1_1:-6639521 | None:intergenic |
| TTATTTAAAGCAGCTACAGG+AGG | 0.610125 | 1_1:-6642051 | None:intergenic |
| CTGACTTGAAGTTGTGCTAG+AGG | 0.618717 | 1_1:-6641911 | None:intergenic |
| TGTGCTAGAGGCAGGAGACG+GGG | 0.621846 | 1_1:-6641899 | None:intergenic |
| TTTGTGGTACCCCAAAACAA+AGG | 0.623782 | 1_1:+6640756 | Msa0004170:CDS |
| ATGTCGGTGAGAGATGAAAG+GGG | 0.624119 | 1_1:-6639519 | None:intergenic |
| TGGTGGAGGAAGATCGGCGA+CGG | 0.631167 | 1_1:-6639566 | None:intergenic |
| GCTTGTCGGAACTAAGGACA+AGG | 0.640010 | 1_1:+6640936 | Msa0004170:CDS |
| TGAAACATACACAAGCGCCC+AGG | 0.640025 | 1_1:-6640155 | None:intergenic |
| GTGCTAGAGGCAGGAGACGG+GGG | 0.640256 | 1_1:-6641898 | None:intergenic |
| AGAAATTGATCGGAGCTTGT+CGG | 0.643569 | 1_1:+6640922 | Msa0004170:CDS |
| TGAACTACCTGAGCGGACTG+AGG | 0.646512 | 1_1:-6641061 | None:intergenic |
| GAAAGTATTCGGGTTACACA+GGG | 0.648488 | 1_1:+6642282 | Msa0004170:CDS |
| GTCGGAACTAAGGACAAGGG+CGG | 0.652471 | 1_1:+6640940 | Msa0004170:CDS |
| GGTTTACGAACTCTCACACC+CGG | 0.663395 | 1_1:-6641823 | None:intergenic |
| ACGAGATGAAGTGAATCTGG+CGG | 0.675438 | 1_1:-6639601 | None:intergenic |
| CGTGAAGACCTGCTATACAG+AGG | 0.705367 | 1_1:-6642536 | None:intergenic |
| ATCATAATGAACTACCTGAG+CGG | 0.709859 | 1_1:-6641068 | None:intergenic |
| CTTGTCGGAACTAAGGACAA+GGG | 0.728246 | 1_1:+6640937 | Msa0004170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAACACTAATTAAAT+TGG | + | chr1_1:6636156-6636175 | Msa0004170:intron | 10.0% |
| !! | TAAAAATATTGTACAAAAAA+GGG | - | chr1_1:6637154-6637173 | None:intergenic | 10.0% |
| !! | ACTATATAGATATATATATT+GGG | - | chr1_1:6637533-6637552 | None:intergenic | 10.0% |
| !! | AAATCTTGATTATAATATAT+TGG | - | chr1_1:6637591-6637610 | None:intergenic | 10.0% |
| !! | AGTTATATCAATAATTTATT+AGG | + | chr1_1:6637867-6637886 | Msa0004170:intron | 10.0% |
| !!! | ATTTTTCATTTTTTTTCATA+TGG | - | chr1_1:6637939-6637958 | None:intergenic | 10.0% |
| !!! | TTAGTTTTAATTTGTTTTTA+CGG | + | chr1_1:6638199-6638218 | Msa0004170:intron | 10.0% |
| !! | TTTAATTGAATATTAAAATG+TGG | + | chr1_1:6638231-6638250 | Msa0004170:intron | 10.0% |
| !! | TTAGTTGTATATATTAATTT+GGG | - | chr1_1:6639154-6639173 | None:intergenic | 10.0% |
| !! | ATTAGTTGTATATATTAATT+TGG | - | chr1_1:6639155-6639174 | None:intergenic | 10.0% |
| !!! | TATTATTTTAGAATATAGTT+CGG | + | chr1_1:6639811-6639830 | Msa0004170:intron | 10.0% |
| !!! | TTTTGTCAATATATACAAAT+TGG | + | chr1_1:6636379-6636398 | Msa0004170:intron | 15.0% |
| !! | GTAAAAATATTGTACAAAAA+AGG | - | chr1_1:6637155-6637174 | None:intergenic | 15.0% |
| !! | CATATAAAATGTACATTTAA+AGG | - | chr1_1:6637253-6637272 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATGATAGTTA+TGG | + | chr1_1:6637263-6637282 | Msa0004170:intron | 15.0% |
| !!! | ACATACATAACATTTTATTA+AGG | + | chr1_1:6637296-6637315 | Msa0004170:intron | 15.0% |
| !! | GACTATATAGATATATATAT+TGG | - | chr1_1:6637534-6637553 | None:intergenic | 15.0% |
| !! | TATATATATCTATATAGTCA+AGG | + | chr1_1:6637535-6637554 | Msa0004170:intron | 15.0% |
| !! | AATTCTAAATAGTTATAGTT+TGG | - | chr1_1:6638108-6638127 | None:intergenic | 15.0% |
| !! | TTGTAAATGAAAAGAATAAA+TGG | - | chr1_1:6638147-6638166 | None:intergenic | 15.0% |
| !! | ACAATAATCAATCATTTATT+CGG | + | chr1_1:6638400-6638419 | Msa0004170:intron | 15.0% |
| !!! | TATCTTTGATTTTTAATTTC+AGG | + | chr1_1:6640105-6640124 | Msa0004170:intron | 15.0% |
| !!! | ATCTTTGATTTTTAATTTCA+GGG | + | chr1_1:6640106-6640125 | Msa0004170:intron | 15.0% |
| !!! | TAATTATATACCTTTGTTTT+GGG | - | chr1_1:6640769-6640788 | None:intergenic | 15.0% |
| !!! | ATAATTATATACCTTTGTTT+TGG | - | chr1_1:6640770-6640789 | None:intergenic | 15.0% |
| !! | GAAATCTTACAATTATATGT+GGG | - | chr1_1:6636420-6636439 | None:intergenic | 20.0% |
| !! | TGAAATCTTACAATTATATG+TGG | - | chr1_1:6636421-6636440 | None:intergenic | 20.0% |
| !! | AAACTCATCAATTTCAATAT+TGG | + | chr1_1:6636446-6636465 | Msa0004170:intron | 20.0% |
| !! | AGAGTTTAGTGTAATAATAT+AGG | + | chr1_1:6636600-6636619 | Msa0004170:intron | 20.0% |
| !! | GAGTTTAGTGTAATAATATA+GGG | + | chr1_1:6636601-6636620 | Msa0004170:intron | 20.0% |
| !! | CTTCAATTAATTAATCTCAA+TGG | - | chr1_1:6636899-6636918 | None:intergenic | 20.0% |
| !! | CATTGAGATTAATTAATTGA+AGG | + | chr1_1:6636897-6636916 | Msa0004170:intron | 20.0% |
| !! | TAAACTTGTCATGTAATAAA+GGG | - | chr1_1:6637323-6637342 | None:intergenic | 20.0% |
| !! | ATAAACTTGTCATGTAATAA+AGG | - | chr1_1:6637324-6637343 | None:intergenic | 20.0% |
| !! | TTTAATAAAGATGAAAAACG+TGG | - | chr1_1:6637810-6637829 | None:intergenic | 20.0% |
| !! | AAATAATTGATGAAATGAGA+GGG | + | chr1_1:6637978-6637997 | Msa0004170:intron | 20.0% |
| !!! | AGTATTTTGATCAATATGAT+CGG | - | chr1_1:6638499-6638518 | None:intergenic | 20.0% |
| !! | ATTTAAAGAGACTTAACAAA+AGG | - | chr1_1:6638646-6638665 | None:intergenic | 20.0% |
| !! | TATGACAAAAACAAAATGAT+AGG | - | chr1_1:6638735-6638754 | None:intergenic | 20.0% |
| !! | TCTTATATATGCAATTTGAA+AGG | - | chr1_1:6638830-6638849 | None:intergenic | 20.0% |
| !!! | ACAATTTTTCCATATAGTTA+AGG | + | chr1_1:6639027-6639046 | Msa0004170:intron | 20.0% |
| !! | CTATTTATACCTTAACTATA+TGG | - | chr1_1:6639039-6639058 | None:intergenic | 20.0% |
| !! | TCTGATTCATGAATAATAAT+CGG | + | chr1_1:6639272-6639291 | Msa0004170:intron | 20.0% |
| !! | ATTGAAAAGCAACAATTTAA+CGG | + | chr1_1:6639465-6639484 | Msa0004170:intron | 20.0% |
| !!! | TCTAAAATAATAAATCCAGA+AGG | - | chr1_1:6639803-6639822 | None:intergenic | 20.0% |
| !! | TCTAACTTCAAATTAGAATT+TGG | + | chr1_1:6639987-6640006 | Msa0004170:intron | 20.0% |
| !! | CCATATAGATTCAAAAAAAT+TGG | - | chr1_1:6640185-6640204 | None:intergenic | 20.0% |
| !!! | CCAATTTTTTTGAATCTATA+TGG | + | chr1_1:6640182-6640201 | Msa0004170:intron | 20.0% |
| !!! | TAATGATTTTATTTGTCCTT+TGG | + | chr1_1:6640337-6640356 | Msa0004170:intron | 20.0% |
| !!! | AATTATATACCTTTGTTTTG+GGG | - | chr1_1:6640768-6640787 | None:intergenic | 20.0% |
| !!! | AGGTATATAATTATTTTCTG+TGG | + | chr1_1:6640776-6640795 | Msa0004170:intron | 20.0% |
| !! | GATATGTTAAGAGAATAAAA+TGG | - | chr1_1:6641736-6641755 | None:intergenic | 20.0% |
| !!! | CTTTTAATATGAATTTGTCT+AGG | + | chr1_1:6642440-6642459 | Msa0004170:three_prime_UTR | 20.0% |
| !! | AATATGATTCCATAAAAAAG+TGG | - | chr1_1:6642489-6642508 | None:intergenic | 20.0% |
| !!! | TTTATGGAATCATATTTTGA+TGG | + | chr1_1:6642493-6642512 | Msa0004170:three_prime_UTR | 20.0% |
| !!! | TTATGGAATCATATTTTGAT+GGG | + | chr1_1:6642494-6642513 | Msa0004170:three_prime_UTR | 20.0% |
| ! | AGTAAAGTGAGAAAATTAAG+AGG | + | chr1_1:6636687-6636706 | Msa0004170:intron | 25.0% |
| ! | AAACAAATAGAATGATTAGG+AGG | + | chr1_1:6636956-6636975 | Msa0004170:intron | 25.0% |
| !! | GTCATCATGATTTTGAATTT+TGG | + | chr1_1:6637009-6637028 | Msa0004170:intron | 25.0% |
| ! | ATATTCATATCCATCTATGT+TGG | + | chr1_1:6637059-6637078 | Msa0004170:intron | 25.0% |
| !! | TATTACATGGTTGGTTATAT+GGG | - | chr1_1:6637099-6637118 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAAGAAAAACCT+TGG | - | chr1_1:6637126-6637145 | None:intergenic | 25.0% |
| ! | CCTCTTAACAAAAGATAAAA+GGG | - | chr1_1:6637177-6637196 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAAAGATAAA+AGG | - | chr1_1:6637178-6637197 | None:intergenic | 25.0% |
| ! | CAAATAATTGATGAAATGAG+AGG | + | chr1_1:6637977-6637996 | Msa0004170:intron | 25.0% |
| ! | TCAAAGATGTAAATTAGTTG+AGG | - | chr1_1:6638033-6638052 | None:intergenic | 25.0% |
| !!! | ATCAAAAGCAATTTTGTTTG+TGG | + | chr1_1:6638058-6638077 | Msa0004170:intron | 25.0% |
| ! | TCTAAATAGTTATAGTTTGG+TGG | - | chr1_1:6638105-6638124 | None:intergenic | 25.0% |
| ! | TCTCTTTATATATGAAAGTG+AGG | + | chr1_1:6638286-6638305 | Msa0004170:intron | 25.0% |
| ! | TTTATATATGAAAGTGAGGA+GGG | + | chr1_1:6638290-6638309 | Msa0004170:intron | 25.0% |
| ! | TCGAGTAAGTATAAATAAGA+AGG | - | chr1_1:6638455-6638474 | None:intergenic | 25.0% |
| !!! | GTATTTTGATCAATATGATC+GGG | - | chr1_1:6638498-6638517 | None:intergenic | 25.0% |
| ! | GTTGAACACTTACAAATTAA+TGG | + | chr1_1:6638523-6638542 | Msa0004170:intron | 25.0% |
| ! | ATCAGTTCATTCTTAAACAA+TGG | + | chr1_1:6638581-6638600 | Msa0004170:intron | 25.0% |
| ! | CATTCTTAAACAATGGAAAT+AGG | + | chr1_1:6638588-6638607 | Msa0004170:intron | 25.0% |
| !!! | AGTTCATTTTGAAAACTACA+GGG | - | chr1_1:6638680-6638699 | None:intergenic | 25.0% |
| !!! | AAGTTCATTTTGAAAACTAC+AGG | - | chr1_1:6638681-6638700 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTAAGTATAGAGT+AGG | - | chr1_1:6638705-6638724 | None:intergenic | 25.0% |
| ! | TATATGCAATTTGAAAGGTA+TGG | - | chr1_1:6638825-6638844 | None:intergenic | 25.0% |
| ! | AGGTATAAATAGTAACTAAG+AGG | + | chr1_1:6639047-6639066 | Msa0004170:intron | 25.0% |
| ! | CTCTTCAAATCTAAATCTAT+TGG | - | chr1_1:6639081-6639100 | None:intergenic | 25.0% |
| ! | CTGATTCATGAATAATAATC+GGG | + | chr1_1:6639273-6639292 | Msa0004170:intron | 25.0% |
| ! | AATTACGGCTTAATTATAAC+TGG | - | chr1_1:6639356-6639375 | None:intergenic | 25.0% |
| ! | GTTATAATTAAGCCGTAATT+TGG | + | chr1_1:6639356-6639375 | Msa0004170:intron | 25.0% |
| !!! | CTTGTTTTCTGTTTGATTTT+GGG | + | chr1_1:6639702-6639721 | Msa0004170:intron | 25.0% |
| ! | TAGAAAAAAAAACAATCCTC+AGG | - | chr1_1:6639868-6639887 | None:intergenic | 25.0% |
| ! | TCAATTTCAAATTCTACTTG+TGG | - | chr1_1:6639931-6639950 | None:intergenic | 25.0% |
| !!! | GAAATTGATTTTGACTTGTT+TGG | + | chr1_1:6639943-6639962 | Msa0004170:intron | 25.0% |
| ! | CAACATGGAAAAATAAAAAC+AGG | - | chr1_1:6640546-6640565 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTTCCATGTTGC+AGG | + | chr1_1:6640547-6640566 | Msa0004170:intron | 25.0% |
| ! | TTGAATTGAATTCTTCTTGA+AGG | + | chr1_1:6640692-6640711 | Msa0004170:intron | 25.0% |
| ! | TGAATTGAATTCTTCTTGAA+GGG | + | chr1_1:6640693-6640712 | Msa0004170:intron | 25.0% |
| !!! | TGGCATTTTTCATATTTTTG+TGG | + | chr1_1:6640740-6640759 | Msa0004170:CDS | 25.0% |
| ! | TTTGCATTTCTTCAATATGA+TGG | + | chr1_1:6640822-6640841 | Msa0004170:intron | 25.0% |
| ! | TAAAGTTTACCTTTGTGTTA+GGG | + | chr1_1:6640845-6640864 | Msa0004170:intron | 25.0% |
| ! | AGTTCATTATGATTATGCAT+TGG | + | chr1_1:6641078-6641097 | Msa0004170:intron | 25.0% |
| !! | ATTTGAGTTTGACTTAACTT+TGG | + | chr1_1:6641117-6641136 | Msa0004170:intron | 25.0% |
| ! | ACTTTGGATATAAGTACTTA+TGG | + | chr1_1:6641133-6641152 | Msa0004170:intron | 25.0% |
| ! | ACCTGTTAAATCATTAATCT+AGG | + | chr1_1:6641202-6641221 | Msa0004170:intron | 25.0% |
| ! | CCTGTTAAATCATTAATCTA+GGG | + | chr1_1:6641203-6641222 | Msa0004170:intron | 25.0% |
| ! | TGATTAACGATACAAAAACA+TGG | - | chr1_1:6641418-6641437 | None:intergenic | 25.0% |
| ! | AACAATGAATACTTTCAAGA+TGG | - | chr1_1:6641549-6641568 | None:intergenic | 25.0% |
| !!! | ATCTTGAAAGTATTCATTGT+TGG | + | chr1_1:6641548-6641567 | Msa0004170:intron | 25.0% |
| ! | ATTACATAGCACTGTAATTA+TGG | + | chr1_1:6641656-6641675 | Msa0004170:intron | 25.0% |
| ! | TTGTTAGTTACAAGTTAAGT+AGG | - | chr1_1:6641702-6641721 | None:intergenic | 25.0% |
| ! | ATGATAATTGTTTCAGATGA+AGG | - | chr1_1:6642150-6642169 | None:intergenic | 25.0% |
| ! | AAATGGAAAATCTCTTGTAA+AGG | + | chr1_1:6642242-6642261 | Msa0004170:CDS | 25.0% |
| !!! | CATTTTAAAGCGTTATGTAA+CGG | + | chr1_1:6642384-6642403 | Msa0004170:three_prime_UTR | 25.0% |
| !! | TTGTTTTCAGAAACTTTAGT+TGG | + | chr1_1:6642584-6642603 | Msa0004170:three_prime_UTR | 25.0% |
| TGTCTGATATCAAATGCATA+TGG | + | chr1_1:6635889-6635908 | Msa0004170:CDS | 30.0% | |
| ACTCAATAAATTGATCTCCT+CGG | - | chr1_1:6636042-6636061 | None:intergenic | 30.0% | |
| GGCAAACAAATAGAATGATT+AGG | + | chr1_1:6636953-6636972 | Msa0004170:intron | 30.0% | |
| ! | ATTACATGGTTGGTTATATG+GGG | - | chr1_1:6637098-6637117 | None:intergenic | 30.0% |
| ! | CTATTACATGGTTGGTTATA+TGG | - | chr1_1:6637100-6637119 | None:intergenic | 30.0% |
| AAACCTTGGATTCTATTACA+TGG | - | chr1_1:6637112-6637131 | None:intergenic | 30.0% | |
| ! | CCCTTTTATCTTTTGTTAAG+AGG | + | chr1_1:6637174-6637193 | Msa0004170:intron | 30.0% |
| TCTAAAGAAAACAAGCGAAA+AGG | - | chr1_1:6637230-6637249 | None:intergenic | 30.0% | |
| TTATTGGCATCAAAAGCAAA+AGG | - | chr1_1:6637356-6637375 | None:intergenic | 30.0% | |
| ! | TAGGATCACTATCTTTTAGT+TGG | - | chr1_1:6637453-6637472 | None:intergenic | 30.0% |
| CAACTATTCTATCCTATGAA+GGG | + | chr1_1:6637491-6637510 | Msa0004170:intron | 30.0% | |
| ATATGTTCCAAGAAATCATG+TGG | - | chr1_1:6637679-6637698 | None:intergenic | 30.0% | |
| AATAAAGATGAAAAACGTGG+AGG | - | chr1_1:6637807-6637826 | None:intergenic | 30.0% | |
| CTTTATATATGAAAGTGAGG+AGG | + | chr1_1:6638289-6638308 | Msa0004170:intron | 30.0% | |
| TTGTCAAACACAAATGTAGT+AGG | + | chr1_1:6638428-6638447 | Msa0004170:intron | 30.0% | |
| ! | TGTGTATTCTAGTGTCTTTT+TGG | - | chr1_1:6638778-6638797 | None:intergenic | 30.0% |
| ! | GTTTTCACTTTAATCTGTAG+AGG | - | chr1_1:6638867-6638886 | None:intergenic | 30.0% |
| GTCATATAGTGAATGATAAG+CGG | + | chr1_1:6638896-6638915 | Msa0004170:intron | 30.0% | |
| ! | TTTTATAGCAAGTCTAAGAG+AGG | + | chr1_1:6638958-6638977 | Msa0004170:intron | 30.0% |
| !! | AGTGCATTTTGAAAACTAGA+AGG | + | chr1_1:6638983-6639002 | Msa0004170:intron | 30.0% |
| TTGAAAACTAGAAGGAATCT+AGG | + | chr1_1:6638991-6639010 | Msa0004170:intron | 30.0% | |
| TTTGCTCAAAATACATGTAC+TGG | - | chr1_1:6639235-6639254 | None:intergenic | 30.0% | |
| ! | AAAGTAACAGAAGAAGGTTT+TGG | - | chr1_1:6639498-6639517 | None:intergenic | 30.0% |
| ! | AATGTTGTTGTTGTTGATGT+CGG | - | chr1_1:6639538-6639557 | None:intergenic | 30.0% |
| !! | GCTTGTTTTCTGTTTGATTT+TGG | + | chr1_1:6639701-6639720 | Msa0004170:intron | 30.0% |
| AATAAATCCAGAAGGAACTA+GGG | - | chr1_1:6639795-6639814 | None:intergenic | 30.0% | |
| TAATAAATCCAGAAGGAACT+AGG | - | chr1_1:6639796-6639815 | None:intergenic | 30.0% | |
| TTATTCAGCATAATGCTCAT+CGG | - | chr1_1:6639841-6639860 | None:intergenic | 30.0% | |
| ! | TTATTTGTCCTTTGGTGTAA+TGG | + | chr1_1:6640345-6640364 | Msa0004170:intron | 30.0% |
| AGTAGTTGAAAAGAATAAGC+CGG | + | chr1_1:6640413-6640432 | Msa0004170:CDS | 30.0% | |
| ! | AAATTGAACAGCTTCGATTT+TGG | + | chr1_1:6640436-6640455 | Msa0004170:CDS | 30.0% |
| ACAATATTGCATACCAATAC+TGG | - | chr1_1:6640464-6640483 | None:intergenic | 30.0% | |
| ! | TTGGAGATACTTTTGTATCA+TGG | + | chr1_1:6640604-6640623 | Msa0004170:CDS | 30.0% |
| ACTTAGCTTCACAATACATT+GGG | - | chr1_1:6640720-6640739 | None:intergenic | 30.0% | |
| AACTTAGCTTCACAATACAT+TGG | - | chr1_1:6640721-6640740 | None:intergenic | 30.0% | |
| AATGTATTGTGAAGCTAAGT+TGG | + | chr1_1:6640720-6640739 | Msa0004170:CDS | 30.0% | |
| GTAAAGTTTACCTTTGTGTT+AGG | + | chr1_1:6640844-6640863 | Msa0004170:intron | 30.0% | |
| TGCAACATATGGTTTAAAGA+AGG | - | chr1_1:6640891-6640910 | None:intergenic | 30.0% | |
| ! | GGTATGTATTAAGTTGTATG+TGG | - | chr1_1:6641185-6641204 | None:intergenic | 30.0% |
| CCCTAGATTAATGATTTAAC+AGG | - | chr1_1:6641206-6641225 | None:intergenic | 30.0% | |
| CTAGGAAACTAACTAATAAC+TGG | + | chr1_1:6641235-6641254 | Msa0004170:intron | 30.0% | |
| !! | GTCATTTTGCTTATCAGAAA+AGG | - | chr1_1:6641281-6641300 | None:intergenic | 30.0% |
| ACTTTCAAGATGGAAAAGAA+AGG | - | chr1_1:6641539-6641558 | None:intergenic | 30.0% | |
| !! | TTGAAAGTATTCATTGTTGG+AGG | + | chr1_1:6641551-6641570 | Msa0004170:intron | 30.0% |
| TATTCATTGTTGGAGGAAAA+TGG | + | chr1_1:6641558-6641577 | Msa0004170:intron | 30.0% | |
| ATTCATTGTTGGAGGAAAAT+GGG | + | chr1_1:6641559-6641578 | Msa0004170:intron | 30.0% | |
| !! | GCTGTTGATTCAATATTCTT+TGG | - | chr1_1:6642198-6642217 | None:intergenic | 30.0% |
| !! | CGTTACATAACGCTTTAAAA+TGG | - | chr1_1:6642386-6642405 | None:intergenic | 30.0% |
| AATATGAATTTGTCTAGGCA+CGG | + | chr1_1:6642445-6642464 | Msa0004170:three_prime_UTR | 30.0% | |
| TTTAAGCCTAACTGTGAAGA+TGG | - | chr1_1:6636002-6636021 | None:intergenic | 35.0% | |
| CAGTTCAAACTGCATAACAA+TGG | + | chr1_1:6636133-6636152 | Msa0004170:intron | 35.0% | |
| CAAATAGAATGATTAGGAGG+AGG | + | chr1_1:6636959-6636978 | Msa0004170:intron | 35.0% | |
| GAGGGAATAAGCAACAATAT+TGG | + | chr1_1:6636987-6637006 | Msa0004170:intron | 35.0% | |
| !! | AATTTTGGCGATTAGCATCA+TGG | + | chr1_1:6637024-6637043 | Msa0004170:intron | 35.0% |
| ! | TTACATGGTTGGTTATATGG+GGG | - | chr1_1:6637097-6637116 | None:intergenic | 35.0% |
| CTTGGATTCTATTACATGGT+TGG | - | chr1_1:6637108-6637127 | None:intergenic | 35.0% | |
| CAACCATGTAATAGAATCCA+AGG | + | chr1_1:6637106-6637125 | Msa0004170:intron | 35.0% | |
| ACAAGAAAGCTAAACAACCA+TGG | - | chr1_1:6637387-6637406 | None:intergenic | 35.0% | |
| !! | ATGGTTGTTTAGCTTTCTTG+TGG | + | chr1_1:6637386-6637405 | Msa0004170:intron | 35.0% |
| !! | GATCACTATCTTTTAGTTGG+TGG | - | chr1_1:6637450-6637469 | None:intergenic | 35.0% |
| ATAGTTGCAAAGAGAAGCAA+TGG | - | chr1_1:6637478-6637497 | None:intergenic | 35.0% | |
| GCAACTATTCTATCCTATGA+AGG | + | chr1_1:6637490-6637509 | Msa0004170:intron | 35.0% | |
| TATTGGAAATGCGTGATGTT+TGG | - | chr1_1:6637574-6637593 | None:intergenic | 35.0% | |
| AAAGTGATCCACATGACAAT+GGG | + | chr1_1:6637732-6637751 | Msa0004170:intron | 35.0% | |
| ATTGATGAAATGAGAGGGTT+TGG | + | chr1_1:6637983-6638002 | Msa0004170:intron | 35.0% | |
| TTGATGAAATGAGAGGGTTT+GGG | + | chr1_1:6637984-6638003 | Msa0004170:intron | 35.0% | |
| !! | TAGTTATAGTTTGGTGGTGA+AGG | - | chr1_1:6638099-6638118 | None:intergenic | 35.0% |
| GTCATACTGAAACGACATAA+TGG | - | chr1_1:6638382-6638401 | None:intergenic | 35.0% | |
| TTTACGAGATGAAGTGAATC+TGG | - | chr1_1:6639607-6639626 | None:intergenic | 35.0% | |
| TATGCTGAATAAAACTCCTG+AGG | + | chr1_1:6639849-6639868 | Msa0004170:intron | 35.0% | |
| ! | GTTCTTTAGTTTCAGTTGCT+TGG | + | chr1_1:6640037-6640056 | Msa0004170:intron | 35.0% |
| TTAGTTTCAGTTGCTTGGAT+TGG | + | chr1_1:6640042-6640061 | Msa0004170:intron | 35.0% | |
| ATGATGTGGTATATCCTGTT+TGG | + | chr1_1:6640065-6640084 | Msa0004170:intron | 35.0% | |
| TGTTAATCCAAAGTCCAAAC+AGG | - | chr1_1:6640082-6640101 | None:intergenic | 35.0% | |
| TGTTTGGACTTTGGATTAAC+AGG | + | chr1_1:6640081-6640100 | Msa0004170:intron | 35.0% | |
| TTTCAGGGATACAGAATGAT+AGG | + | chr1_1:6640121-6640140 | Msa0004170:intron | 35.0% | |
| GATAGTGATTAGCATTGTGA+TGG | + | chr1_1:6640206-6640225 | Msa0004170:intron | 35.0% | |
| ! | GTTGTGTCTGGTTTAATGAT+TGG | + | chr1_1:6640295-6640314 | Msa0004170:intron | 35.0% |
| TGGTTTAATGATTGGCATTG+TGG | + | chr1_1:6640303-6640322 | Msa0004170:intron | 35.0% | |
| ACTTTATAGCATTCATACGC+TGG | - | chr1_1:6640396-6640415 | None:intergenic | 35.0% | |
| AATCGAAGCTGTTCAATTTC+CGG | - | chr1_1:6640435-6640454 | None:intergenic | 35.0% | |
| ATACTACACGTTTAGCATCA+AGG | - | chr1_1:6640492-6640511 | None:intergenic | 35.0% | |
| ! | TTTTCCATGTTGCAGGATTT+TGG | + | chr1_1:6640554-6640573 | Msa0004170:intron | 35.0% |
| TATGTTGTTCCCTAACACAA+AGG | - | chr1_1:6640857-6640876 | None:intergenic | 35.0% | |
| AACATGAGCCAGAAATTGAT+CGG | + | chr1_1:6640912-6640931 | Msa0004170:CDS | 35.0% | |
| TCTCAAAGAGCTGTTAGTTA+CGG | + | chr1_1:6640983-6641002 | Msa0004170:CDS | 35.0% | |
| ATCATAATGAACTACCTGAG+CGG | - | chr1_1:6641071-6641090 | None:intergenic | 35.0% | |
| TGACTAACGATACAAACACA+TGG | - | chr1_1:6641350-6641369 | None:intergenic | 35.0% | |
| CATATTGTAGTGTTCTTTGC+TGG | + | chr1_1:6641498-6641517 | Msa0004170:intron | 35.0% | |
| CAAGATGGAAAAGAAAGGAA+AGG | - | chr1_1:6641534-6641553 | None:intergenic | 35.0% | |
| AACTTCAAGTCAGTTCCAAA+AGG | + | chr1_1:6641921-6641940 | Msa0004170:CDS | 35.0% | |
| GTTCCAAAAGGAAGTAAAAG+AGG | + | chr1_1:6641933-6641952 | Msa0004170:CDS | 35.0% | |
| ! | ACTCCTCTTTTACTTCCTTT+TGG | - | chr1_1:6641939-6641958 | None:intergenic | 35.0% |
| GGAAGTAAAAGAGGAGTTAT+TGG | + | chr1_1:6641942-6641961 | Msa0004170:CDS | 35.0% | |
| TGTTTGTTTAAACCTGCAAC+AGG | - | chr1_1:6641997-6642016 | None:intergenic | 35.0% | |
| ! | GTTATTTAAAGCAGCTACAG+AGG | - | chr1_1:6642025-6642044 | None:intergenic | 35.0% |
| ! | TTATTTAAAGCAGCTACAGG+AGG | - | chr1_1:6642054-6642073 | None:intergenic | 35.0% |
| ! | TGGTTATTTAAAGCAGCTAC+AGG | - | chr1_1:6642027-6642046 | None:intergenic | 35.0% |
| TGAGTAGTTAAACCAGCTAT+AGG | - | chr1_1:6642087-6642106 | None:intergenic | 35.0% | |
| AGATGAAGGATTAGACTTCT+GGG | - | chr1_1:6642136-6642155 | None:intergenic | 35.0% | |
| !! | CCAGAATGGAAGAAAGTATT+CGG | + | chr1_1:6642271-6642290 | Msa0004170:CDS | 35.0% |
| !! | CAGAATGGAAGAAAGTATTC+GGG | + | chr1_1:6642272-6642291 | Msa0004170:CDS | 35.0% |
| CTAAGAAAAACCAGATCAGT+AGG | + | chr1_1:6642309-6642328 | Msa0004170:CDS | 35.0% | |
| !! | ATCGACAATTTTGTGCTACT+GGG | - | chr1_1:6642337-6642356 | None:intergenic | 35.0% |
| CAAAATTGTCGATGTTTAGC+CGG | + | chr1_1:6642344-6642363 | Msa0004170:three_prime_UTR | 35.0% | |
| ! | AAAGCGTTATGTAACGGTTT+CGG | + | chr1_1:6642390-6642409 | Msa0004170:three_prime_UTR | 35.0% |
| !!! | AGCTTGATGCCACTTTTTTA+TGG | + | chr1_1:6642477-6642496 | Msa0004170:three_prime_UTR | 35.0% |
| !!! | GGAATCATATTTTGATGGGA+TGG | + | chr1_1:6642498-6642517 | Msa0004170:three_prime_UTR | 35.0% |
| !!! | GAGATTTTGCTGCTTTTGCT+GGG | + | chr1_1:6635928-6635947 | Msa0004170:CDS | 40.0% |
| AACTAGCCATCTTCACAGTT+AGG | + | chr1_1:6635993-6636012 | Msa0004170:intron | 40.0% | |
| ATGTAGATATTGACAGCGAC+AGG | + | chr1_1:6636932-6636951 | Msa0004170:intron | 40.0% | |
| TTGGGAATGTCCAACATAGA+TGG | - | chr1_1:6637072-6637091 | None:intergenic | 40.0% | |
| !! | AACCATGGTGGATGGATTAT+TGG | - | chr1_1:6637372-6637391 | None:intergenic | 40.0% |
| AGAAAGCTAAACAACCATGG+TGG | - | chr1_1:6637384-6637403 | None:intergenic | 40.0% | |
| !!! | CTATCTTTTAGTTGGTGGAG+TGG | - | chr1_1:6637445-6637464 | None:intergenic | 40.0% |
| ! | GCAAAGAGAAGCAATGGATT+AGG | - | chr1_1:6637472-6637491 | None:intergenic | 40.0% |
| TCTATCCTATGAAGGGACAA+TGG | + | chr1_1:6637498-6637517 | Msa0004170:intron | 40.0% | |
| AAGTGTGCCACATGATTTCT+TGG | + | chr1_1:6637669-6637688 | Msa0004170:intron | 40.0% | |
| CATATTTGCAGCATGCATTC+TGG | + | chr1_1:6637694-6637713 | Msa0004170:intron | 40.0% | |
| CAAAGTGATCCACATGACAA+TGG | + | chr1_1:6637731-6637750 | Msa0004170:intron | 40.0% | |
| AAAGATGAAAAACGTGGAGG+AGG | - | chr1_1:6637804-6637823 | None:intergenic | 40.0% | |
| TGATGAAATGAGAGGGTTTG+GGG | + | chr1_1:6637985-6638004 | Msa0004170:intron | 40.0% | |
| AATGTTCCTAGTGGCACAAT+TGG | - | chr1_1:6638801-6638820 | None:intergenic | 40.0% | |
| ! | AGGTATGGTAATGTTCCTAG+TGG | - | chr1_1:6638810-6638829 | None:intergenic | 40.0% |
| CGATTAGGGTGACCAAATTA+CGG | - | chr1_1:6639371-6639390 | None:intergenic | 40.0% | |
| AGGGGAAAAGTAACAGAAGA+AGG | - | chr1_1:6639504-6639523 | None:intergenic | 40.0% | |
| GGTATATCCTGTTTGGACTT+TGG | + | chr1_1:6640072-6640091 | Msa0004170:intron | 40.0% | |
| TGATAGGATCCTTTCTTACC+TGG | + | chr1_1:6640137-6640156 | Msa0004170:CDS | 40.0% | |
| GATAGGATCCTTTCTTACCT+GGG | + | chr1_1:6640138-6640157 | Msa0004170:CDS | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr1_1:6640265-6640284 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | chr1_1:6640266-6640285 | None:intergenic | 40.0% |
| ! | TTGGTTGTTGTTGTTGTGTC+TGG | + | chr1_1:6640283-6640302 | Msa0004170:intron | 40.0% |
| !!! | TGTAATGGCAGGAGTGTTTT+TGG | + | chr1_1:6640360-6640379 | Msa0004170:intron | 40.0% |
| ATAGCATTCATACGCTGGAT+AGG | - | chr1_1:6640391-6640410 | None:intergenic | 40.0% | |
| !!! | TTCGATTTTGGTGCCAGTAT+TGG | + | chr1_1:6640448-6640467 | Msa0004170:CDS | 40.0% |
| ATGACAGTGTGTGAGAGATT+TGG | + | chr1_1:6640585-6640604 | Msa0004170:CDS | 40.0% | |
| TTTGTGGTACCCCAAAACAA+AGG | + | chr1_1:6640756-6640775 | Msa0004170:CDS | 40.0% | |
| ! | GGCTCATGTTTTGCAACATA+TGG | - | chr1_1:6640902-6640921 | None:intergenic | 40.0% |
| AGAAATTGATCGGAGCTTGT+CGG | + | chr1_1:6640922-6640941 | Msa0004170:CDS | 40.0% | |
| ! | AATCTAGGGCGATTTGAACT+AGG | + | chr1_1:6641217-6641236 | Msa0004170:intron | 40.0% |
| TTGGAGGAAAATGGGAGAAA+GGG | + | chr1_1:6641567-6641586 | Msa0004170:intron | 40.0% | |
| TTATGGCAACAACAACAACC+TGG | + | chr1_1:6641673-6641692 | Msa0004170:intron | 40.0% | |
| TACAAGTTAAGTAGGTTGCC+AGG | - | chr1_1:6641694-6641713 | None:intergenic | 40.0% | |
| TGTTTAAACCTGCAACAGGA+GGG | - | chr1_1:6641993-6642012 | None:intergenic | 40.0% | |
| TTGTTTAAACCTGCAACAGG+AGG | - | chr1_1:6641994-6642013 | None:intergenic | 40.0% | |
| GTAGTTAAACCAGCTATAGG+AGG | - | chr1_1:6642084-6642103 | None:intergenic | 40.0% | |
| CAGATGAAGGATTAGACTTC+TGG | - | chr1_1:6642137-6642156 | None:intergenic | 40.0% | |
| ! | ATTTTCAGTTGCTGAAGAGG+AGG | - | chr1_1:6642226-6642245 | None:intergenic | 40.0% |
| TCCTCTTCAGCAACTGAAAA+TGG | + | chr1_1:6642225-6642244 | Msa0004170:CDS | 40.0% | |
| ! | TCCATTTTCAGTTGCTGAAG+AGG | - | chr1_1:6642229-6642248 | None:intergenic | 40.0% |
| TGTAAAGGATGAGACCAGAA+TGG | + | chr1_1:6642257-6642276 | Msa0004170:CDS | 40.0% | |
| CCGAATACTTTCTTCCATTC+TGG | - | chr1_1:6642274-6642293 | None:intergenic | 40.0% | |
| !! | AGAAAGTATTCGGGTTACAC+AGG | + | chr1_1:6642281-6642300 | Msa0004170:CDS | 40.0% |
| !! | GAAAGTATTCGGGTTACACA+GGG | + | chr1_1:6642282-6642301 | Msa0004170:CDS | 40.0% |
| ! | CATCGACAATTTTGTGCTAC+TGG | - | chr1_1:6642338-6642357 | None:intergenic | 40.0% |
| TCGATGTTTAGCCGGAAATA+GGG | + | chr1_1:6642352-6642371 | Msa0004170:three_prime_UTR | 40.0% | |
| GATGGGATGGATATTTGCAT+CGG | + | chr1_1:6642511-6642530 | Msa0004170:three_prime_UTR | 40.0% | |
| !!! | CGAGATTTTGCTGCTTTTGC+TGG | + | chr1_1:6635927-6635946 | Msa0004170:CDS | 45.0% |
| !!! | ATTTTGCTGCTTTTGCTGGG+TGG | + | chr1_1:6635931-6635950 | Msa0004170:intron | 45.0% |
| !!! | TTTTGCTGCTTTTGCTGGGT+GGG | + | chr1_1:6635932-6635951 | Msa0004170:intron | 45.0% |
| AAATTGATCTCCTCGGTTGC+TGG | - | chr1_1:6636035-6636054 | None:intergenic | 45.0% | |
| TCGTCACATACAAGCGATCA+TGG | + | chr1_1:6636191-6636210 | Msa0004170:intron | 45.0% | |
| TGGCGATTAGCATCATGGTA+TGG | + | chr1_1:6637029-6637048 | Msa0004170:intron | 45.0% | |
| !! | GTTGGTTATATGGGGGCATT+GGG | - | chr1_1:6637090-6637109 | None:intergenic | 45.0% |
| AGGATGTCATGTGTTGGACA+AGG | - | chr1_1:6637210-6637229 | None:intergenic | 45.0% | |
| GCGAAAAGGATGTCATGTGT+TGG | - | chr1_1:6637216-6637235 | None:intergenic | 45.0% | |
| TGCCAATAATCCATCCACCA+TGG | + | chr1_1:6637367-6637386 | Msa0004170:intron | 45.0% | |
| ! | AGCTAAACAACCATGGTGGA+TGG | - | chr1_1:6637380-6637399 | None:intergenic | 45.0% |
| !!! | CTTTTAGTTGGTGGAGTGGA+GGG | - | chr1_1:6637441-6637460 | None:intergenic | 45.0% |
| !!! | TCTTTTAGTTGGTGGAGTGG+AGG | - | chr1_1:6637442-6637461 | None:intergenic | 45.0% |
| CTTCTCCATTGTCCCTTCAT+AGG | - | chr1_1:6637506-6637525 | None:intergenic | 45.0% | |
| CACATGACAATGGGACTTCA+CGG | + | chr1_1:6637741-6637760 | Msa0004170:intron | 45.0% | |
| ! | TACACACCAATTGTGCCACT+AGG | + | chr1_1:6638792-6638811 | Msa0004170:intron | 45.0% |
| ATTTGGTCACCCTAATCGCT+CGG | + | chr1_1:6639373-6639392 | Msa0004170:intron | 45.0% | |
| CACTCACTAGTAGAGTTGCT+TGG | + | chr1_1:6639397-6639416 | Msa0004170:intron | 45.0% | |
| ATGTCGGTGAGAGATGAAAG+GGG | - | chr1_1:6639522-6639541 | None:intergenic | 45.0% | |
| GATGTCGGTGAGAGATGAAA+GGG | - | chr1_1:6639523-6639542 | None:intergenic | 45.0% | |
| TGATGTCGGTGAGAGATGAA+AGG | - | chr1_1:6639524-6639543 | None:intergenic | 45.0% | |
| ACGAGATGAAGTGAATCTGG+CGG | - | chr1_1:6639604-6639623 | None:intergenic | 45.0% | |
| ! | TTTTTCGCCCTAGTTCCTTC+TGG | + | chr1_1:6639785-6639804 | Msa0004170:intron | 45.0% |
| ! | GTTGCTTGGATTGGATGATG+TGG | + | chr1_1:6640051-6640070 | Msa0004170:intron | 45.0% |
| ACTAAGTGGGGTCAGCTAAA+TGG | - | chr1_1:6640253-6640272 | None:intergenic | 45.0% | |
| ATTTAGCTGACCCCACTTAG+TGG | + | chr1_1:6640252-6640271 | Msa0004170:intron | 45.0% | |
| TTTAGCTGACCCCACTTAGT+GGG | + | chr1_1:6640253-6640272 | Msa0004170:intron | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | chr1_1:6640267-6640286 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | + | chr1_1:6640264-6640283 | Msa0004170:intron | 45.0% | |
| ! | TTGTCCTTTGGTGTAATGGC+AGG | + | chr1_1:6640349-6640368 | Msa0004170:intron | 45.0% |
| GCAACCAAAATCCTGCAACA+TGG | - | chr1_1:6640561-6640580 | None:intergenic | 45.0% | |
| GACAAGCTCCGATCAATTTC+TGG | - | chr1_1:6640923-6640942 | None:intergenic | 45.0% | |
| CTTGTCGGAACTAAGGACAA+GGG | + | chr1_1:6640937-6640956 | Msa0004170:CDS | 45.0% | |
| GTTGGAGGAAAATGGGAGAA+AGG | + | chr1_1:6641566-6641585 | Msa0004170:intron | 45.0% | |
| CTTGAAATTGCAGCAACGAC+CGG | + | chr1_1:6641798-6641817 | Msa0004170:intron | 45.0% | |
| TTGAAATTGCAGCAACGACC+GGG | + | chr1_1:6641799-6641818 | Msa0004170:intron | 45.0% | |
| ! | AACTTGTGGTTCTGTAGCAG+CGG | - | chr1_1:6641872-6641891 | None:intergenic | 45.0% |
| ! | CTGACTTGAAGTTGTGCTAG+AGG | - | chr1_1:6641914-6641933 | None:intergenic | 45.0% |
| GTTTAAACCTGCAACAGGAG+GGG | - | chr1_1:6641992-6642011 | None:intergenic | 45.0% | |
| GTCGATGTTTAGCCGGAAAT+AGG | + | chr1_1:6642351-6642370 | Msa0004170:three_prime_UTR | 45.0% | |
| TTAGCCGGAAATAGGGTAGT+TGG | + | chr1_1:6642359-6642378 | Msa0004170:three_prime_UTR | 45.0% | |
| TGGTCCAACTACCCTATTTC+CGG | - | chr1_1:6642366-6642385 | None:intergenic | 45.0% | |
| !! | AAACTATATAATATAATAAT+TGG | - | chr1_1:6637619-6637638 | None:intergenic | 5.0% |
| !!! | ATTATTATATTATATAGTTT+TGG | + | chr1_1:6637619-6637638 | Msa0004170:intron | 5.0% |
| CTGAATATCTCCAGCAACCG+AGG | + | chr1_1:6636022-6636041 | Msa0004170:intron | 50.0% | |
| ! | TGATTAGGAGGAGGCACATG+AGG | + | chr1_1:6636968-6636987 | Msa0004170:intron | 50.0% |
| ! | GATTAGGAGGAGGCACATGA+GGG | + | chr1_1:6636969-6636988 | Msa0004170:intron | 50.0% |
| ! | GGTTGGTTATATGGGGGCAT+TGG | - | chr1_1:6637091-6637110 | None:intergenic | 50.0% |
| CGTGAAGTCCCATTGTCATG+TGG | - | chr1_1:6637743-6637762 | None:intergenic | 50.0% | |
| GGTGCGCAATTGACTGTAAC+TGG | - | chr1_1:6638012-6638031 | None:intergenic | 50.0% | |
| AAGCGGACGTGCAATATGTG+TGG | + | chr1_1:6638913-6638932 | Msa0004170:intron | 50.0% | |
| AGTGAGTGACCGAGCGATTA+GGG | - | chr1_1:6639385-6639404 | None:intergenic | 50.0% | |
| TAGTGAGTGACCGAGCGATT+AGG | - | chr1_1:6639386-6639405 | None:intergenic | 50.0% | |
| AGATGAAGTGAATCTGGCGG+TGG | - | chr1_1:6639601-6639620 | None:intergenic | 50.0% | |
| TGAAACATACACAAGCGCCC+AGG | - | chr1_1:6640158-6640177 | None:intergenic | 50.0% | |
| CACTCCTGCCATTACACCAA+AGG | - | chr1_1:6640356-6640375 | None:intergenic | 50.0% | |
| ATCGGAGCTTGTCGGAACTA+AGG | + | chr1_1:6640930-6640949 | Msa0004170:CDS | 50.0% | |
| GCTTGTCGGAACTAAGGACA+AGG | + | chr1_1:6640936-6640955 | Msa0004170:CDS | 50.0% | |
| GGTTTACGAACTCTCACACC+CGG | - | chr1_1:6641826-6641845 | None:intergenic | 50.0% | |
| CTTGAAGTTGTGCTAGAGGC+AGG | - | chr1_1:6641910-6641929 | None:intergenic | 50.0% | |
| AACCAGAAGCCTCCTATAGC+TGG | + | chr1_1:6642072-6642091 | Msa0004170:CDS | 50.0% | |
| AACCAGCTATAGGAGGCTTC+TGG | - | chr1_1:6642077-6642096 | None:intergenic | 50.0% | |
| CTACTGGGTTCCTACTGATC+TGG | - | chr1_1:6642322-6642341 | None:intergenic | 50.0% | |
| CGTGAAGACCTGCTATACAG+AGG | - | chr1_1:6642539-6642558 | None:intergenic | 50.0% | |
| ! | TGGAGGGCACGGGTCTTTAT+TGG | - | chr1_1:6637425-6637444 | None:intergenic | 55.0% |
| GATCGGGTTCTTGCTACACG+AGG | - | chr1_1:6638482-6638501 | None:intergenic | 55.0% | |
| TGAAGTGAATCTGGCGGTGG+CGG | - | chr1_1:6639598-6639617 | None:intergenic | 55.0% | |
| CACAAGCGCCCAGGTAAGAA+AGG | - | chr1_1:6640149-6640168 | None:intergenic | 55.0% | |
| GTCGGAACTAAGGACAAGGG+CGG | + | chr1_1:6640940-6640959 | Msa0004170:CDS | 55.0% | |
| TCGGAACTAAGGACAAGGGC+GGG | + | chr1_1:6640941-6640960 | Msa0004170:CDS | 55.0% | |
| !! | TGAACTACCTGAGCGGACTG+AGG | - | chr1_1:6641064-6641083 | None:intergenic | 55.0% |
| TCGTAAACCTGCACCTGCCA+AGG | + | chr1_1:6641837-6641856 | Msa0004170:CDS | 55.0% | |
| CGTAAACCTGCACCTGCCAA+GGG | + | chr1_1:6641838-6641857 | Msa0004170:CDS | 55.0% | |
| GACGGGGGTTCTTCAACTTG+TGG | - | chr1_1:6641886-6641905 | None:intergenic | 55.0% | |
| TTGTGCTAGAGGCAGGAGAC+GGG | - | chr1_1:6641903-6641922 | None:intergenic | 55.0% | |
| GTTGTGCTAGAGGCAGGAGA+CGG | - | chr1_1:6641904-6641923 | None:intergenic | 55.0% | |
| ! | GGGGCTACTTTAGGAGCTTG+TGG | - | chr1_1:6641973-6641992 | None:intergenic | 55.0% |
| ! | GCAACAGGAGGGGCTACTTT+AGG | - | chr1_1:6641982-6642001 | None:intergenic | 55.0% |
| AAAGTAGCCCCTCCTGTTGC+AGG | + | chr1_1:6641982-6642001 | Msa0004170:CDS | 55.0% | |
| AAGCAGCTACAGGAGGCTTC+TGG | - | chr1_1:6642047-6642066 | None:intergenic | 55.0% | |
| !! | CATCGGCTCCTCTGTATAGC+AGG | + | chr1_1:6642528-6642547 | Msa0004170:three_prime_UTR | 55.0% |
| !! | AGTTGGTGGAGTGGAGGGCA+CGG | - | chr1_1:6637436-6637455 | None:intergenic | 60.0% |
| AGGAAGATCGGCGACGGCAA+CGG | - | chr1_1:6639563-6639582 | None:intergenic | 60.0% | |
| TGGTGGAGGAAGATCGGCGA+CGG | - | chr1_1:6639569-6639588 | None:intergenic | 60.0% | |
| !! | TGGCGGTGGTGGAGGAAGAT+CGG | - | chr1_1:6639575-6639594 | None:intergenic | 60.0% |
| ATTGCAGCAACGACCGGGAC+CGG | + | chr1_1:6641804-6641823 | Msa0004170:intron | 60.0% | |
| GTTCTGTAGCAGCGGCTGGT+TGG | - | chr1_1:6641864-6641883 | None:intergenic | 60.0% | |
| ! | TGTGGTTCTGTAGCAGCGGC+TGG | - | chr1_1:6641868-6641887 | None:intergenic | 60.0% |
| TGTGCTAGAGGCAGGAGACG+GGG | - | chr1_1:6641902-6641921 | None:intergenic | 60.0% | |
| ! | GTTGGTGGAGTGGAGGGCAC+GGG | - | chr1_1:6637435-6637454 | None:intergenic | 65.0% |
| ! | AGTGAATCTGGCGGTGGCGG+TGG | - | chr1_1:6639595-6639614 | None:intergenic | 65.0% |
| ACCAGCACCTCAGTCCGCTC+AGG | + | chr1_1:6641054-6641073 | Msa0004170:CDS | 65.0% | |
| !! | ACCTGAGCGGACTGAGGTGC+TGG | - | chr1_1:6641058-6641077 | None:intergenic | 65.0% |
| TTGCAGCAACGACCGGGACC+GGG | + | chr1_1:6641805-6641824 | Msa0004170:intron | 65.0% | |
| CGAACTCTCACACCCGGTCC+CGG | - | chr1_1:6641820-6641839 | None:intergenic | 65.0% | |
| GTGCTAGAGGCAGGAGACGG+GGG | - | chr1_1:6641901-6641920 | None:intergenic | 65.0% | |
| ! | GAATCTGGCGGTGGCGGTGG+CGG | - | chr1_1:6639592-6639611 | None:intergenic | 70.0% |
| ! | GGTTGGCCCTTGGCAGGTGC+AGG | - | chr1_1:6641847-6641866 | None:intergenic | 70.0% |
| ! | AGCAGCGGCTGGTTGGCCCT+TGG | - | chr1_1:6641857-6641876 | None:intergenic | 70.0% |
| ! | GCGGCTGGTTGGCCCTTGGC+AGG | - | chr1_1:6641853-6641872 | None:intergenic | 75.0% |
| !! | GGTGGCGGTGGCGGTGGTGG+AGG | - | chr1_1:6639583-6639602 | None:intergenic | 80.0% |
| !! | TCTGGCGGTGGCGGTGGCGG+TGG | - | chr1_1:6639589-6639608 | None:intergenic | 80.0% |
| !! | GGCGGTGGCGGTGGCGGTGG+TGG | - | chr1_1:6639586-6639605 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6635888 | 6642644 | 6635888 | ID=Msa0004170;Name=Msa0004170 |
| chr1_1 | mRNA | 6635888 | 6642644 | 6635888 | ID=Msa0004170-mRNA-1;Parent=Msa0004170;Name=Msa0004170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.85|0.75|0.87|1|1|8|303|403 |
| chr1_1 | exon | 6635888 | 6635949 | 6635888 | ID=Msa0004170-mRNA-1:exon:2258;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6639474 | 6639621 | 6639474 | ID=Msa0004170-mRNA-1:exon:2259;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6640127 | 6640167 | 6640127 | ID=Msa0004170-mRNA-1:exon:2260;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6640371 | 6640469 | 6640371 | ID=Msa0004170-mRNA-1:exon:2261;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6640569 | 6640625 | 6640569 | ID=Msa0004170-mRNA-1:exon:2262;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6640714 | 6640777 | 6640714 | ID=Msa0004170-mRNA-1:exon:2263;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6640866 | 6641075 | 6640866 | ID=Msa0004170-mRNA-1:exon:2264;Parent=Msa0004170-mRNA-1 |
| chr1_1 | exon | 6641811 | 6642644 | 6641811 | ID=Msa0004170-mRNA-1:exon:2265;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6635888 | 6635949 | 6635888 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6639474 | 6639621 | 6639474 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6640127 | 6640167 | 6640127 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6640371 | 6640469 | 6640371 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6640569 | 6640625 | 6640569 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6640714 | 6640777 | 6640714 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6640866 | 6641075 | 6640866 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | CDS | 6641811 | 6642341 | 6641811 | ID=Msa0004170-mRNA-1:cds;Parent=Msa0004170-mRNA-1 |
| chr1_1 | three_prime_UTR | 6642342 | 6642644 | 6642342 | ID=Msa0004170-mRNA-1:three_prime_utr;Parent=Msa0004170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
