Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102300 | sp|Q8LE10|HA22I_ARATH | 52.439 | 328 | 118 | 7 | 1 | 326 | 1 | 292 | 1.06e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102300 | G7I756 | 93.529 | 340 | 12 | 1 | 1 | 330 | 1 | 340 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004170 | Msa0102300 | 0.952443 | 2.395069e-110 | -8.615850e-47 |
| Msa0102300 | Msa0751200 | 0.801534 | 8.603560e-49 | -8.615850e-47 |
| Msa0102300 | Msa0751250 | 0.800584 | 1.346085e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102300 | MtrunA17_Chr1g0156501 | 93.529 | 340 | 12 | 1 | 1 | 330 | 1 | 340 | 0.0 | 575 |
| Msa0102300 | MtrunA17_Chr3g0142571 | 59.517 | 331 | 86 | 6 | 1 | 330 | 1 | 284 | 5.20e-120 | 347 |
| Msa0102300 | MtrunA17_Chr1g0177871 | 44.211 | 190 | 87 | 2 | 1 | 190 | 1 | 171 | 4.62e-57 | 185 |
| Msa0102300 | MtrunA17_Chr7g0267131 | 50.345 | 145 | 72 | 0 | 1 | 145 | 1 | 145 | 1.25e-54 | 177 |
| Msa0102300 | MtrunA17_Chr5g0403731 | 32.632 | 95 | 62 | 1 | 15 | 109 | 37 | 129 | 1.81e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102300 | AT5G42560.1 | 52.439 | 328 | 118 | 7 | 1 | 326 | 1 | 292 | 1.08e-97 | 291 |
| Msa0102300 | AT5G42560.3 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 3.01e-91 | 274 |
| Msa0102300 | AT5G42560.2 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 3.01e-91 | 274 |
| Msa0102300 | AT1G19950.1 | 47.353 | 340 | 139 | 6 | 1 | 328 | 1 | 312 | 5.68e-91 | 274 |
| Msa0102300 | AT1G75700.1 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.52e-78 | 238 |
| Msa0102300 | AT1G75700.2 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.52e-78 | 238 |
| Msa0102300 | AT1G75700.3 | 54.054 | 185 | 56 | 1 | 1 | 156 | 1 | 185 | 8.05e-72 | 221 |
| Msa0102300 | AT2G36020.1 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 4.48e-59 | 191 |
| Msa0102300 | AT4G36720.1 | 29.032 | 93 | 64 | 2 | 15 | 107 | 45 | 135 | 1.42e-11 | 63.2 |
Find 120 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGCTCCGATCAATTTC+TGG | 0.157517 | 1_3:+9051499 | None:intergenic |
| GGAAGTAAAAGAGGAGTTAT+TGG | 0.203411 | 1_3:-9050477 | Msa0102300:CDS |
| TCCTCTTCAGCAACTGAAAA+TGG | 0.204563 | 1_3:-9050194 | Msa0102300:CDS |
| CAGATGAAGGATTAGACTTC+TGG | 0.208821 | 1_3:+9050285 | None:intergenic |
| AATCGAAGCTGTTCAATTTC+CGG | 0.211353 | 1_3:+9051987 | None:intergenic |
| CCGAATACTTTCTTCCATTC+TGG | 0.228086 | 1_3:+9050148 | None:intergenic |
| ATAATTATATACCTTTGTTT+TGG | 0.244409 | 1_3:+9051652 | None:intergenic |
| AAATTGAACAGCTTCGATTT+TGG | 0.251242 | 1_3:-9051983 | Msa0102300:CDS |
| GTCGATGTTTAGCCGGAAAT+AGG | 0.254113 | 1_3:-9050068 | Msa0102300:three_prime_UTR |
| AAAGTAGCCCCTCCTGTTGC+AGG | 0.293457 | 1_3:-9050437 | Msa0102300:CDS |
| GGCGGTGGCGGTGGCGGTGG+TGG | 0.297929 | 1_3:+9052836 | None:intergenic |
| GTTATAATTAAGCCGTAATT+TGG | 0.300625 | 1_3:-9053063 | Msa0102300:five_prime_UTR |
| TGGTCCAACTACCCTATTTC+CGG | 0.300661 | 1_3:+9050056 | None:intergenic |
| GCTGTTGATTCAATATTCTT+TGG | 0.315816 | 1_3:+9050224 | None:intergenic |
| CGTTACATAACGCTTTAAAA+TGG | 0.322148 | 1_3:+9050036 | None:intergenic |
| GCGGCTGGTTGGCCCTTGGC+AGG | 0.329188 | 1_3:+9050569 | None:intergenic |
| ACAATATTGCATACCAATAC+TGG | 0.331896 | 1_3:+9051958 | None:intergenic |
| AATTACGGCTTAATTATAAC+TGG | 0.336290 | 1_3:+9053066 | None:intergenic |
| CCAGAATGGAAGAAAGTATT+CGG | 0.341573 | 1_3:-9050148 | Msa0102300:CDS |
| GGTTGGCCCTTGGCAGGTGC+AGG | 0.343393 | 1_3:+9050575 | None:intergenic |
| GGTGGCGGTGGCGGTGGTGG+AGG | 0.345256 | 1_3:+9052839 | None:intergenic |
| AGTGAGTGACCGAGCGATTA+GGG | 0.351302 | 1_3:+9053037 | None:intergenic |
| AAGCAGCTACAGGAGGCTTC+TGG | 0.363846 | 1_3:+9050375 | None:intergenic |
| ATGATAATTGTTTCAGATGA+AGG | 0.367093 | 1_3:+9050272 | None:intergenic |
| ATTGAAAAGCAACAATTTAA+CGG | 0.368642 | 1_3:-9052954 | Msa0102300:five_prime_UTR |
| TCTGGCGGTGGCGGTGGCGG+TGG | 0.369667 | 1_3:+9052833 | None:intergenic |
| AAAGTAACAGAAGAAGGTTT+TGG | 0.372978 | 1_3:+9052924 | None:intergenic |
| TTTCAGGGATACAGAATGAT+AGG | 0.376443 | 1_3:-9052298 | Msa0102300:intron |
| AAAGCGTTATGTAACGGTTT+CGG | 0.381129 | 1_3:-9050029 | Msa0102300:three_prime_UTR |
| GCAACAGGAGGGGCTACTTT+AGG | 0.385854 | 1_3:+9050440 | None:intergenic |
| TAGTGAGTGACCGAGCGATT+AGG | 0.386792 | 1_3:+9053036 | None:intergenic |
| AACCAGCTATAGGAGGCTTC+TGG | 0.393471 | 1_3:+9050345 | None:intergenic |
| GAATCTGGCGGTGGCGGTGG+CGG | 0.396709 | 1_3:+9052830 | None:intergenic |
| TTTACGAGATGAAGTGAATC+TGG | 0.399770 | 1_3:+9052815 | None:intergenic |
| TCGATGTTTAGCCGGAAATA+GGG | 0.403077 | 1_3:-9050067 | Msa0102300:three_prime_UTR |
| CTACTGGGTTCCTACTGATC+TGG | 0.407544 | 1_3:+9050100 | None:intergenic |
| TGAGTAGTTAAACCAGCTAT+AGG | 0.410981 | 1_3:+9050335 | None:intergenic |
| CGATTAGGGTGACCAAATTA+CGG | 0.421750 | 1_3:+9053051 | None:intergenic |
| ATTGCAGCAACGACCGGGAC+CGG | 0.424962 | 1_3:-9050615 | Msa0102300:intron |
| ATGACAGTGTGTGAGAGATT+TGG | 0.431821 | 1_3:-9051834 | Msa0102300:CDS |
| TGCAACATATGGTTTAAAGA+AGG | 0.441591 | 1_3:+9051531 | None:intergenic |
| AATGTATTGTGAAGCTAAGT+TGG | 0.443796 | 1_3:-9051699 | Msa0102300:CDS |
| TGTTTGTTTAAACCTGCAAC+AGG | 0.458598 | 1_3:+9050425 | None:intergenic |
| TGGTTATTTAAAGCAGCTAC+AGG | 0.459504 | 1_3:+9050365 | None:intergenic |
| AGCAGCGGCTGGTTGGCCCT+TGG | 0.466244 | 1_3:+9050565 | None:intergenic |
| AGTGAATCTGGCGGTGGCGG+TGG | 0.466820 | 1_3:+9052827 | None:intergenic |
| AGATGAAGGATTAGACTTCT+GGG | 0.473622 | 1_3:+9050286 | None:intergenic |
| TGTGGTTCTGTAGCAGCGGC+TGG | 0.474161 | 1_3:+9050554 | None:intergenic |
| TGATAGGATCCTTTCTTACC+TGG | 0.479771 | 1_3:-9052282 | Msa0102300:CDS |
| TCTCAAAGAGCTGTTAGTTA+CGG | 0.482414 | 1_3:-9051436 | Msa0102300:CDS |
| CACAAGCGCCCAGGTAAGAA+AGG | 0.483813 | 1_3:+9052273 | None:intergenic |
| GTTCCAAAAGGAAGTAAAAG+AGG | 0.484315 | 1_3:-9050486 | Msa0102300:CDS |
| CAGAATGGAAGAAAGTATTC+GGG | 0.484520 | 1_3:-9050147 | Msa0102300:CDS |
| AACCAGAAGCCTCCTATAGC+TGG | 0.489915 | 1_3:-9050347 | Msa0102300:CDS |
| ACTTAGCTTCACAATACATT+GGG | 0.490800 | 1_3:+9051702 | None:intergenic |
| TTAGCCGGAAATAGGGTAGT+TGG | 0.493270 | 1_3:-9050060 | Msa0102300:three_prime_UTR |
| CTTGAAATTGCAGCAACGAC+CGG | 0.494610 | 1_3:-9050621 | Msa0102300:intron |
| AGGGGAAAAGTAACAGAAGA+AGG | 0.494785 | 1_3:+9052918 | None:intergenic |
| CTTGAAGTTGTGCTAGAGGC+AGG | 0.497182 | 1_3:+9050512 | None:intergenic |
| GTTCTGTAGCAGCGGCTGGT+TGG | 0.499552 | 1_3:+9050558 | None:intergenic |
| ATCGGAGCTTGTCGGAACTA+AGG | 0.500483 | 1_3:-9051489 | Msa0102300:CDS |
| TGGCGGTGGTGGAGGAAGAT+CGG | 0.502486 | 1_3:+9052847 | None:intergenic |
| CAAAATTGTCGATGTTTAGC+CGG | 0.503945 | 1_3:-9050075 | Msa0102300:three_prime_UTR |
| TTGTGCTAGAGGCAGGAGAC+GGG | 0.507659 | 1_3:+9050519 | None:intergenic |
| CATCGGCTCCTCTGTATAGC+AGG | 0.511672 | 1_3:-9049891 | Msa0102300:three_prime_UTR |
| ACCTGAGCGGACTGAGGTGC+TGG | 0.512203 | 1_3:+9051364 | None:intergenic |
| AATGTTGTTGTTGTTGATGT+CGG | 0.517313 | 1_3:+9052884 | None:intergenic |
| TCGTAAACCTGCACCTGCCA+AGG | 0.519991 | 1_3:-9050582 | Msa0102300:CDS |
| AAATGGAAAATCTCTTGTAA+AGG | 0.521953 | 1_3:-9050177 | Msa0102300:CDS |
| AACTTAGCTTCACAATACAT+TGG | 0.528637 | 1_3:+9051701 | None:intergenic |
| AACTTCAAGTCAGTTCCAAA+AGG | 0.529032 | 1_3:-9050498 | Msa0102300:CDS |
| GGGGCTACTTTAGGAGCTTG+TGG | 0.533157 | 1_3:+9050449 | None:intergenic |
| ACCAGCACCTCAGTCCGCTC+AGG | 0.534486 | 1_3:-9051365 | Msa0102300:intron |
| AAGAAAGTATTCGGGTTACA+CGG | 0.537361 | 1_3:-9050139 | Msa0102300:CDS |
| TTGAAATTGCAGCAACGACC+GGG | 0.537573 | 1_3:-9050620 | Msa0102300:intron |
| ATAGCATTCATACGCTGGAT+AGG | 0.541233 | 1_3:+9052031 | None:intergenic |
| TGAAGTGAATCTGGCGGTGG+CGG | 0.542417 | 1_3:+9052824 | None:intergenic |
| GATGTCGGTGAGAGATGAAA+GGG | 0.545308 | 1_3:+9052899 | None:intergenic |
| TTGCAGCAACGACCGGGACC+GGG | 0.545537 | 1_3:-9050614 | Msa0102300:intron |
| GATGGGATGGATATTTGCAT+CGG | 0.545657 | 1_3:-9049908 | Msa0102300:three_prime_UTR |
| AGAAAGTATTCGGGTTACAC+GGG | 0.556108 | 1_3:-9050138 | Msa0102300:CDS |
| TGTAAAGGATGAGACCAGAA+TGG | 0.564274 | 1_3:-9050162 | Msa0102300:CDS |
| AGGAAGATCGGCGACGGCAA+CGG | 0.564309 | 1_3:+9052859 | None:intergenic |
| GTTGTGCTAGAGGCAGGAGA+CGG | 0.564317 | 1_3:+9050518 | None:intergenic |
| ACTTTATAGCATTCATACGC+TGG | 0.570495 | 1_3:+9052026 | None:intergenic |
| AGTAGTTGAAAAGAATAAGC+CGG | 0.571678 | 1_3:-9052006 | Msa0102300:CDS |
| TGTTTAAACCTGCAACAGGA+GGG | 0.572742 | 1_3:+9050429 | None:intergenic |
| CGAACTCTCACACCCGGTCC+CGG | 0.573418 | 1_3:+9050602 | None:intergenic |
| CACTCACTAGTAGAGTTGCT+TGG | 0.574895 | 1_3:-9053022 | Msa0102300:five_prime_UTR |
| GTTTAAACCTGCAACAGGAG+GGG | 0.575918 | 1_3:+9050430 | None:intergenic |
| CGTAAACCTGCACCTGCCAA+GGG | 0.577276 | 1_3:-9050581 | Msa0102300:CDS |
| AACATGAGCCAGAAATTGAT+CGG | 0.579657 | 1_3:-9051507 | Msa0102300:CDS |
| TCGGAACTAAGGACAAGGGC+GGG | 0.580754 | 1_3:-9051478 | Msa0102300:CDS |
| TTGTTTAAACCTGCAACAGG+AGG | 0.583194 | 1_3:+9050428 | None:intergenic |
| GTTATTTAAAGCAGCTACAG+AGG | 0.587763 | 1_3:+9050397 | None:intergenic |
| AATATGAATTTGTCTAGGCA+CGG | 0.588086 | 1_3:-9049974 | Msa0102300:three_prime_UTR |
| GATAGGATCCTTTCTTACCT+GGG | 0.588549 | 1_3:-9052281 | Msa0102300:CDS |
| AGATGAAGTGAATCTGGCGG+TGG | 0.595755 | 1_3:+9052821 | None:intergenic |
| AACTTGTGGTTCTGTAGCAG+CGG | 0.597787 | 1_3:+9050550 | None:intergenic |
| GTAGTTAAACCAGCTATAGG+AGG | 0.599048 | 1_3:+9050338 | None:intergenic |
| TGATGTCGGTGAGAGATGAA+AGG | 0.607271 | 1_3:+9052898 | None:intergenic |
| TTATTTAAAGCAGCTACAGG+AGG | 0.610125 | 1_3:+9050368 | None:intergenic |
| ATTTGGTCACCCTAATCGCT+CGG | 0.615390 | 1_3:-9053046 | Msa0102300:five_prime_UTR |
| CTGACTTGAAGTTGTGCTAG+AGG | 0.618717 | 1_3:+9050508 | None:intergenic |
| TGTGCTAGAGGCAGGAGACG+GGG | 0.621846 | 1_3:+9050520 | None:intergenic |
| TTTGTGGTACCCCAAAACAA+AGG | 0.623782 | 1_3:-9051663 | Msa0102300:intron |
| ATGTCGGTGAGAGATGAAAG+GGG | 0.624119 | 1_3:+9052900 | None:intergenic |
| TGGTGGAGGAAGATCGGCGA+CGG | 0.631167 | 1_3:+9052853 | None:intergenic |
| GCTTGTCGGAACTAAGGACA+AGG | 0.640010 | 1_3:-9051483 | Msa0102300:CDS |
| TGAAACATACACAAGCGCCC+AGG | 0.640025 | 1_3:+9052264 | None:intergenic |
| GTGCTAGAGGCAGGAGACGG+GGG | 0.640256 | 1_3:+9050521 | None:intergenic |
| AGAAATTGATCGGAGCTTGT+CGG | 0.643569 | 1_3:-9051497 | Msa0102300:CDS |
| TGAACTACCTGAGCGGACTG+AGG | 0.646512 | 1_3:+9051358 | None:intergenic |
| GTCGGAACTAAGGACAAGGG+CGG | 0.652471 | 1_3:-9051479 | Msa0102300:CDS |
| GGTTTACGAACTCTCACACC+CGG | 0.663395 | 1_3:+9050596 | None:intergenic |
| ACGAGATGAAGTGAATCTGG+CGG | 0.675438 | 1_3:+9052818 | None:intergenic |
| GAAAGTATTCGGGTTACACG+GGG | 0.677731 | 1_3:-9050137 | Msa0102300:CDS |
| CGTGAAGACCTGCTATACAG+AGG | 0.705367 | 1_3:+9049883 | None:intergenic |
| ATCATAATGAACTACCTGAG+CGG | 0.709859 | 1_3:+9051351 | None:intergenic |
| CTTGTCGGAACTAAGGACAA+GGG | 0.728246 | 1_3:-9051482 | Msa0102300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTAGAATATAGTT+CGG | - | chr1_3:9050292-9050311 | Msa0102300:CDS | 10.0% |
| !!! | TATCTTTGATTTTTAATTTC+AGG | - | chr1_3:9050586-9050605 | Msa0102300:CDS | 15.0% |
| !!! | ATCTTTGATTTTTAATTTCA+GGG | - | chr1_3:9050587-9050606 | Msa0102300:CDS | 15.0% |
| !!! | TAATTATATACCTTTGTTTT+GGG | + | chr1_3:9051250-9051269 | None:intergenic | 15.0% |
| !!! | ATAATTATATACCTTTGTTT+TGG | + | chr1_3:9051251-9051270 | None:intergenic | 15.0% |
| !! | ATTGAAAAGCAACAATTTAA+CGG | - | chr1_3:9049946-9049965 | Msa0102300:three_prime_UTR | 20.0% |
| !!! | TCTAAAATAATAAATCCAGA+AGG | + | chr1_3:9050284-9050303 | None:intergenic | 20.0% |
| !! | TCTAACTTCAAATTAGAATT+TGG | - | chr1_3:9050468-9050487 | Msa0102300:CDS | 20.0% |
| !! | CCATATAGATTCAAAAAAAT+TGG | + | chr1_3:9050666-9050685 | None:intergenic | 20.0% |
| !!! | CCAATTTTTTTGAATCTATA+TGG | - | chr1_3:9050663-9050682 | Msa0102300:intron | 20.0% |
| !!! | TAATGATTTTATTTGTCCTT+TGG | - | chr1_3:9050818-9050837 | Msa0102300:intron | 20.0% |
| !!! | AATTATATACCTTTGTTTTG+GGG | + | chr1_3:9051249-9051268 | None:intergenic | 20.0% |
| !!! | AGGTATATAATTATTTTCTG+TGG | - | chr1_3:9051257-9051276 | Msa0102300:intron | 20.0% |
| !! | GATATGTTAAGAGAATAAAA+TGG | + | chr1_3:9052217-9052236 | None:intergenic | 20.0% |
| !!! | CTTTTAATATGAATTTGTCT+AGG | - | chr1_3:9052921-9052940 | Msa0102300:five_prime_UTR | 20.0% |
| !! | AATATGATTCCATAAAAAAG+TGG | + | chr1_3:9052970-9052989 | None:intergenic | 20.0% |
| !!! | TTTATGGAATCATATTTTGA+TGG | - | chr1_3:9052974-9052993 | Msa0102300:five_prime_UTR | 20.0% |
| !!! | TTATGGAATCATATTTTGAT+GGG | - | chr1_3:9052975-9052994 | Msa0102300:five_prime_UTR | 20.0% |
| ! | AATTACGGCTTAATTATAAC+TGG | + | chr1_3:9049837-9049856 | None:intergenic | 25.0% |
| ! | GTTATAATTAAGCCGTAATT+TGG | - | chr1_3:9049837-9049856 | Msa0102300:three_prime_UTR | 25.0% |
| !!! | CTTGTTTTCTGTTTGATTTT+GGG | - | chr1_3:9050183-9050202 | Msa0102300:CDS | 25.0% |
| ! | TAGAAAAAAAAACAATCCTC+AGG | + | chr1_3:9050349-9050368 | None:intergenic | 25.0% |
| ! | TCAATTTCAAATTCTACTTG+TGG | + | chr1_3:9050412-9050431 | None:intergenic | 25.0% |
| !!! | GAAATTGATTTTGACATGTT+TGG | - | chr1_3:9050424-9050443 | Msa0102300:CDS | 25.0% |
| ! | CAACATGGAAAAATAAAAAC+AGG | + | chr1_3:9051027-9051046 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTTCCATGTTGC+AGG | - | chr1_3:9051028-9051047 | Msa0102300:intron | 25.0% |
| ! | TTGAATTGAATTCTTCTTGA+AGG | - | chr1_3:9051173-9051192 | Msa0102300:intron | 25.0% |
| ! | TGAATTGAATTCTTCTTGAA+GGG | - | chr1_3:9051174-9051193 | Msa0102300:intron | 25.0% |
| !!! | TGGCATTTTTCATATTTTTG+TGG | - | chr1_3:9051221-9051240 | Msa0102300:intron | 25.0% |
| ! | TTTGCATTTCTTCAATATGA+TGG | - | chr1_3:9051303-9051322 | Msa0102300:intron | 25.0% |
| ! | TAAAGTTTACCTTTGTGTTA+GGG | - | chr1_3:9051326-9051345 | Msa0102300:intron | 25.0% |
| ! | AGTTCATTATGATTATGCAT+TGG | - | chr1_3:9051559-9051578 | Msa0102300:intron | 25.0% |
| !! | ATTTGAGTTTGACTTAACTT+TGG | - | chr1_3:9051598-9051617 | Msa0102300:intron | 25.0% |
| ! | ACTTTGGATATAAGTACTTA+TGG | - | chr1_3:9051614-9051633 | Msa0102300:intron | 25.0% |
| ! | ACCTGTTAAATCATTAATCT+AGG | - | chr1_3:9051683-9051702 | Msa0102300:CDS | 25.0% |
| ! | CCTGTTAAATCATTAATCTA+GGG | - | chr1_3:9051684-9051703 | Msa0102300:CDS | 25.0% |
| ! | TGATTAACGATACAAAAACA+TGG | + | chr1_3:9051899-9051918 | None:intergenic | 25.0% |
| ! | AACAATGAATACTTTCAAGA+TGG | + | chr1_3:9052030-9052049 | None:intergenic | 25.0% |
| !!! | ATCTTGAAAGTATTCATTGT+TGG | - | chr1_3:9052029-9052048 | Msa0102300:CDS | 25.0% |
| ! | ATTACATAGCACTGTAATTA+TGG | - | chr1_3:9052137-9052156 | Msa0102300:intron | 25.0% |
| ! | TTGTTAGTTACAAGTTAAGT+AGG | + | chr1_3:9052183-9052202 | None:intergenic | 25.0% |
| ! | ATGATAATTGTTTCAGATGA+AGG | + | chr1_3:9052631-9052650 | None:intergenic | 25.0% |
| ! | AAATGGAAAATCTCTTGTAA+AGG | - | chr1_3:9052723-9052742 | Msa0102300:intron | 25.0% |
| !!! | CATTTTAAAGCGTTATGTAA+CGG | - | chr1_3:9052865-9052884 | Msa0102300:five_prime_UTR | 25.0% |
| !! | TTGTTTTCAGAAACTTTAGT+TGG | - | chr1_3:9053065-9053084 | Msa0102300:five_prime_UTR | 25.0% |
| ! | AAAGTAACAGAAGAAGGTTT+TGG | + | chr1_3:9049979-9049998 | None:intergenic | 30.0% |
| ! | AATGTTGTTGTTGTTGATGT+CGG | + | chr1_3:9050019-9050038 | None:intergenic | 30.0% |
| !! | GCTTGTTTTCTGTTTGATTT+TGG | - | chr1_3:9050182-9050201 | Msa0102300:CDS | 30.0% |
| AATAAATCCAGAAGGAACTA+GGG | + | chr1_3:9050276-9050295 | None:intergenic | 30.0% | |
| TAATAAATCCAGAAGGAACT+AGG | + | chr1_3:9050277-9050296 | None:intergenic | 30.0% | |
| TTATTCAGCATAATGCTCAT+CGG | + | chr1_3:9050322-9050341 | None:intergenic | 30.0% | |
| ! | TTATTTGTCCTTTGGTGTAA+TGG | - | chr1_3:9050826-9050845 | Msa0102300:intron | 30.0% |
| AGTAGTTGAAAAGAATAAGC+CGG | - | chr1_3:9050894-9050913 | Msa0102300:intron | 30.0% | |
| ! | AAATTGAACAGCTTCGATTT+TGG | - | chr1_3:9050917-9050936 | Msa0102300:intron | 30.0% |
| ACAATATTGCATACCAATAC+TGG | + | chr1_3:9050945-9050964 | None:intergenic | 30.0% | |
| ! | TTGGAGATACTTTTGTATCA+TGG | - | chr1_3:9051085-9051104 | Msa0102300:intron | 30.0% |
| ACTTAGCTTCACAATACATT+GGG | + | chr1_3:9051201-9051220 | None:intergenic | 30.0% | |
| AACTTAGCTTCACAATACAT+TGG | + | chr1_3:9051202-9051221 | None:intergenic | 30.0% | |
| AATGTATTGTGAAGCTAAGT+TGG | - | chr1_3:9051201-9051220 | Msa0102300:intron | 30.0% | |
| GTAAAGTTTACCTTTGTGTT+AGG | - | chr1_3:9051325-9051344 | Msa0102300:intron | 30.0% | |
| TGCAACATATGGTTTAAAGA+AGG | + | chr1_3:9051372-9051391 | None:intergenic | 30.0% | |
| ! | GGTATGTATTAAGTTGTATG+TGG | + | chr1_3:9051666-9051685 | None:intergenic | 30.0% |
| CCCTAGATTAATGATTTAAC+AGG | + | chr1_3:9051687-9051706 | None:intergenic | 30.0% | |
| CTAGGAAACTAACTAATAAC+TGG | - | chr1_3:9051716-9051735 | Msa0102300:intron | 30.0% | |
| !! | GTCATTTTGCTTATCAGAAA+AGG | + | chr1_3:9051762-9051781 | None:intergenic | 30.0% |
| ACTTTCAAGATGGAAAAGAA+AGG | + | chr1_3:9052020-9052039 | None:intergenic | 30.0% | |
| !! | TTGAAAGTATTCATTGTTGG+AGG | - | chr1_3:9052032-9052051 | Msa0102300:CDS | 30.0% |
| TATTCATTGTTGGAGGAAAA+TGG | - | chr1_3:9052039-9052058 | Msa0102300:CDS | 30.0% | |
| ATTCATTGTTGGAGGAAAAT+GGG | - | chr1_3:9052040-9052059 | Msa0102300:CDS | 30.0% | |
| !! | GCTGTTGATTCAATATTCTT+TGG | + | chr1_3:9052679-9052698 | None:intergenic | 30.0% |
| !! | CGTTACATAACGCTTTAAAA+TGG | + | chr1_3:9052867-9052886 | None:intergenic | 30.0% |
| AATATGAATTTGTCTAGGCA+CGG | - | chr1_3:9052926-9052945 | Msa0102300:five_prime_UTR | 30.0% | |
| TTTACGAGATGAAGTGAATC+TGG | + | chr1_3:9050088-9050107 | None:intergenic | 35.0% | |
| TATGCTGAATAAAACTCCTG+AGG | - | chr1_3:9050330-9050349 | Msa0102300:CDS | 35.0% | |
| ! | GTTCTTTAGTTTCAGTTGCT+TGG | - | chr1_3:9050518-9050537 | Msa0102300:CDS | 35.0% |
| TTAGTTTCAGTTGCTTGGAT+TGG | - | chr1_3:9050523-9050542 | Msa0102300:CDS | 35.0% | |
| ATGATGTGGTATATCCTGTT+TGG | - | chr1_3:9050546-9050565 | Msa0102300:CDS | 35.0% | |
| TGTTAATCCAAAGTCCAAAC+AGG | + | chr1_3:9050563-9050582 | None:intergenic | 35.0% | |
| TGTTTGGACTTTGGATTAAC+AGG | - | chr1_3:9050562-9050581 | Msa0102300:CDS | 35.0% | |
| TTTCAGGGATACAGAATGAT+AGG | - | chr1_3:9050602-9050621 | Msa0102300:CDS | 35.0% | |
| GATAGTGATTAGCATTGTGA+TGG | - | chr1_3:9050687-9050706 | Msa0102300:intron | 35.0% | |
| ! | GTTGTGTCTGGTTTAATGAT+TGG | - | chr1_3:9050776-9050795 | Msa0102300:intron | 35.0% |
| TGGTTTAATGATTGGCATTG+TGG | - | chr1_3:9050784-9050803 | Msa0102300:intron | 35.0% | |
| ACTTTATAGCATTCATACGC+TGG | + | chr1_3:9050877-9050896 | None:intergenic | 35.0% | |
| AATCGAAGCTGTTCAATTTC+CGG | + | chr1_3:9050916-9050935 | None:intergenic | 35.0% | |
| ATACTACACGTTTAGCATCA+AGG | + | chr1_3:9050973-9050992 | None:intergenic | 35.0% | |
| ! | TTTTCCATGTTGCAGGATTT+TGG | - | chr1_3:9051035-9051054 | Msa0102300:intron | 35.0% |
| TATGTTGTTCCCTAACACAA+AGG | + | chr1_3:9051338-9051357 | None:intergenic | 35.0% | |
| AACATGAGCCAGAAATTGAT+CGG | - | chr1_3:9051393-9051412 | Msa0102300:CDS | 35.0% | |
| TCTCAAAGAGCTGTTAGTTA+CGG | - | chr1_3:9051464-9051483 | Msa0102300:CDS | 35.0% | |
| ATCATAATGAACTACCTGAG+CGG | + | chr1_3:9051552-9051571 | None:intergenic | 35.0% | |
| TGACTAACGATACAAACACA+TGG | + | chr1_3:9051831-9051850 | None:intergenic | 35.0% | |
| CATATTGTAGTGTTCTTTGC+TGG | - | chr1_3:9051979-9051998 | Msa0102300:CDS | 35.0% | |
| CAAGATGGAAAAGAAAGGAA+AGG | + | chr1_3:9052015-9052034 | None:intergenic | 35.0% | |
| AACTTCAAGTCAGTTCCAAA+AGG | - | chr1_3:9052402-9052421 | Msa0102300:intron | 35.0% | |
| GTTCCAAAAGGAAGTAAAAG+AGG | - | chr1_3:9052414-9052433 | Msa0102300:intron | 35.0% | |
| ! | ACTCCTCTTTTACTTCCTTT+TGG | + | chr1_3:9052420-9052439 | None:intergenic | 35.0% |
| GGAAGTAAAAGAGGAGTTAT+TGG | - | chr1_3:9052423-9052442 | Msa0102300:intron | 35.0% | |
| TGTTTGTTTAAACCTGCAAC+AGG | + | chr1_3:9052478-9052497 | None:intergenic | 35.0% | |
| ! | GTTATTTAAAGCAGCTACAG+AGG | + | chr1_3:9052506-9052525 | None:intergenic | 35.0% |
| ! | TTATTTAAAGCAGCTACAGG+AGG | + | chr1_3:9052535-9052554 | None:intergenic | 35.0% |
| ! | TGGTTATTTAAAGCAGCTAC+AGG | + | chr1_3:9052508-9052527 | None:intergenic | 35.0% |
| TGAGTAGTTAAACCAGCTAT+AGG | + | chr1_3:9052568-9052587 | None:intergenic | 35.0% | |
| AGATGAAGGATTAGACTTCT+GGG | + | chr1_3:9052617-9052636 | None:intergenic | 35.0% | |
| !! | CCAGAATGGAAGAAAGTATT+CGG | - | chr1_3:9052752-9052771 | Msa0102300:intron | 35.0% |
| !! | CAGAATGGAAGAAAGTATTC+GGG | - | chr1_3:9052753-9052772 | Msa0102300:intron | 35.0% |
| !! | AAGAAAGTATTCGGGTTACA+CGG | - | chr1_3:9052761-9052780 | Msa0102300:intron | 35.0% |
| CTAAGAAAAACCAGATCAGT+AGG | - | chr1_3:9052790-9052809 | Msa0102300:intron | 35.0% | |
| !! | ATCGACAATTTTGTGCTACT+GGG | + | chr1_3:9052818-9052837 | None:intergenic | 35.0% |
| CAAAATTGTCGATGTTTAGC+CGG | - | chr1_3:9052825-9052844 | Msa0102300:five_prime_UTR | 35.0% | |
| ! | AAAGCGTTATGTAACGGTTT+CGG | - | chr1_3:9052871-9052890 | Msa0102300:five_prime_UTR | 35.0% |
| !!! | AGCTTGATGCCACTTTTTTA+TGG | - | chr1_3:9052958-9052977 | Msa0102300:five_prime_UTR | 35.0% |
| !!! | GGAATCATATTTTGATGGGA+TGG | - | chr1_3:9052979-9052998 | Msa0102300:five_prime_UTR | 35.0% |
| CGATTAGGGTGACCAAATTA+CGG | + | chr1_3:9049852-9049871 | None:intergenic | 40.0% | |
| AGGGGAAAAGTAACAGAAGA+AGG | + | chr1_3:9049985-9050004 | None:intergenic | 40.0% | |
| GGTATATCCTGTTTGGACTT+TGG | - | chr1_3:9050553-9050572 | Msa0102300:CDS | 40.0% | |
| TGATAGGATCCTTTCTTACC+TGG | - | chr1_3:9050618-9050637 | Msa0102300:intron | 40.0% | |
| GATAGGATCCTTTCTTACCT+GGG | - | chr1_3:9050619-9050638 | Msa0102300:intron | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | + | chr1_3:9050746-9050765 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | + | chr1_3:9050747-9050766 | None:intergenic | 40.0% |
| ! | TTGGTTGTTGTTGTTGTGTC+TGG | - | chr1_3:9050764-9050783 | Msa0102300:intron | 40.0% |
| !!! | TGTAATGGCAGGAGTGTTTT+TGG | - | chr1_3:9050841-9050860 | Msa0102300:intron | 40.0% |
| ATAGCATTCATACGCTGGAT+AGG | + | chr1_3:9050872-9050891 | None:intergenic | 40.0% | |
| !!! | TTCGATTTTGGTGCCAGTAT+TGG | - | chr1_3:9050929-9050948 | Msa0102300:intron | 40.0% |
| ATGACAGTGTGTGAGAGATT+TGG | - | chr1_3:9051066-9051085 | Msa0102300:intron | 40.0% | |
| TTTGTGGTACCCCAAAACAA+AGG | - | chr1_3:9051237-9051256 | Msa0102300:intron | 40.0% | |
| ! | GGCTCATGTTTTGCAACATA+TGG | + | chr1_3:9051383-9051402 | None:intergenic | 40.0% |
| AGAAATTGATCGGAGCTTGT+CGG | - | chr1_3:9051403-9051422 | Msa0102300:CDS | 40.0% | |
| ! | AATCTAGGGCGATTTGAACT+AGG | - | chr1_3:9051698-9051717 | Msa0102300:CDS | 40.0% |
| TTGGAGGAAAATGGGAGAAA+GGG | - | chr1_3:9052048-9052067 | Msa0102300:CDS | 40.0% | |
| TTATGGCAACAACAACAACC+TGG | - | chr1_3:9052154-9052173 | Msa0102300:intron | 40.0% | |
| TACAAGTTAAGTAGGTTGCC+AGG | + | chr1_3:9052175-9052194 | None:intergenic | 40.0% | |
| TGTTTAAACCTGCAACAGGA+GGG | + | chr1_3:9052474-9052493 | None:intergenic | 40.0% | |
| TTGTTTAAACCTGCAACAGG+AGG | + | chr1_3:9052475-9052494 | None:intergenic | 40.0% | |
| GTAGTTAAACCAGCTATAGG+AGG | + | chr1_3:9052565-9052584 | None:intergenic | 40.0% | |
| CAGATGAAGGATTAGACTTC+TGG | + | chr1_3:9052618-9052637 | None:intergenic | 40.0% | |
| ! | ATTTTCAGTTGCTGAAGAGG+AGG | + | chr1_3:9052707-9052726 | None:intergenic | 40.0% |
| TCCTCTTCAGCAACTGAAAA+TGG | - | chr1_3:9052706-9052725 | Msa0102300:intron | 40.0% | |
| ! | TCCATTTTCAGTTGCTGAAG+AGG | + | chr1_3:9052710-9052729 | None:intergenic | 40.0% |
| TGTAAAGGATGAGACCAGAA+TGG | - | chr1_3:9052738-9052757 | Msa0102300:intron | 40.0% | |
| CCGAATACTTTCTTCCATTC+TGG | + | chr1_3:9052755-9052774 | None:intergenic | 40.0% | |
| !! | AGAAAGTATTCGGGTTACAC+GGG | - | chr1_3:9052762-9052781 | Msa0102300:intron | 40.0% |
| ! | CATCGACAATTTTGTGCTAC+TGG | + | chr1_3:9052819-9052838 | None:intergenic | 40.0% |
| TCGATGTTTAGCCGGAAATA+GGG | - | chr1_3:9052833-9052852 | Msa0102300:five_prime_UTR | 40.0% | |
| GATGGGATGGATATTTGCAT+CGG | - | chr1_3:9052992-9053011 | Msa0102300:five_prime_UTR | 40.0% | |
| ATTTGGTCACCCTAATCGCT+CGG | - | chr1_3:9049854-9049873 | Msa0102300:three_prime_UTR | 45.0% | |
| CACTCACTAGTAGAGTTGCT+TGG | - | chr1_3:9049878-9049897 | Msa0102300:three_prime_UTR | 45.0% | |
| ATGTCGGTGAGAGATGAAAG+GGG | + | chr1_3:9050003-9050022 | None:intergenic | 45.0% | |
| GATGTCGGTGAGAGATGAAA+GGG | + | chr1_3:9050004-9050023 | None:intergenic | 45.0% | |
| TGATGTCGGTGAGAGATGAA+AGG | + | chr1_3:9050005-9050024 | None:intergenic | 45.0% | |
| ACGAGATGAAGTGAATCTGG+CGG | + | chr1_3:9050085-9050104 | None:intergenic | 45.0% | |
| ! | TTTTTCGCCCTAGTTCCTTC+TGG | - | chr1_3:9050266-9050285 | Msa0102300:CDS | 45.0% |
| ! | GTTGCTTGGATTGGATGATG+TGG | - | chr1_3:9050532-9050551 | Msa0102300:CDS | 45.0% |
| ACTAAGTGGGGTCAGCTAAA+TGG | + | chr1_3:9050734-9050753 | None:intergenic | 45.0% | |
| ATTTAGCTGACCCCACTTAG+TGG | - | chr1_3:9050733-9050752 | Msa0102300:intron | 45.0% | |
| TTTAGCTGACCCCACTTAGT+GGG | - | chr1_3:9050734-9050753 | Msa0102300:intron | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | + | chr1_3:9050748-9050767 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | - | chr1_3:9050745-9050764 | Msa0102300:intron | 45.0% | |
| ! | TTGTCCTTTGGTGTAATGGC+AGG | - | chr1_3:9050830-9050849 | Msa0102300:intron | 45.0% |
| GCAACCAAAATCCTGCAACA+TGG | + | chr1_3:9051042-9051061 | None:intergenic | 45.0% | |
| GACAAGCTCCGATCAATTTC+TGG | + | chr1_3:9051404-9051423 | None:intergenic | 45.0% | |
| CTTGTCGGAACTAAGGACAA+GGG | - | chr1_3:9051418-9051437 | Msa0102300:CDS | 45.0% | |
| GTTGGAGGAAAATGGGAGAA+AGG | - | chr1_3:9052047-9052066 | Msa0102300:CDS | 45.0% | |
| CTTGAAATTGCAGCAACGAC+CGG | - | chr1_3:9052279-9052298 | Msa0102300:CDS | 45.0% | |
| TTGAAATTGCAGCAACGACC+GGG | - | chr1_3:9052280-9052299 | Msa0102300:CDS | 45.0% | |
| ! | AACTTGTGGTTCTGTAGCAG+CGG | + | chr1_3:9052353-9052372 | None:intergenic | 45.0% |
| ! | CTGACTTGAAGTTGTGCTAG+AGG | + | chr1_3:9052395-9052414 | None:intergenic | 45.0% |
| GTTTAAACCTGCAACAGGAG+GGG | + | chr1_3:9052473-9052492 | None:intergenic | 45.0% | |
| !! | GAAAGTATTCGGGTTACACG+GGG | - | chr1_3:9052763-9052782 | Msa0102300:intron | 45.0% |
| GTCGATGTTTAGCCGGAAAT+AGG | - | chr1_3:9052832-9052851 | Msa0102300:five_prime_UTR | 45.0% | |
| TTAGCCGGAAATAGGGTAGT+TGG | - | chr1_3:9052840-9052859 | Msa0102300:five_prime_UTR | 45.0% | |
| TGGTCCAACTACCCTATTTC+CGG | + | chr1_3:9052847-9052866 | None:intergenic | 45.0% | |
| AGTGAGTGACCGAGCGATTA+GGG | + | chr1_3:9049866-9049885 | None:intergenic | 50.0% | |
| TAGTGAGTGACCGAGCGATT+AGG | + | chr1_3:9049867-9049886 | None:intergenic | 50.0% | |
| AGATGAAGTGAATCTGGCGG+TGG | + | chr1_3:9050082-9050101 | None:intergenic | 50.0% | |
| TGAAACATACACAAGCGCCC+AGG | + | chr1_3:9050639-9050658 | None:intergenic | 50.0% | |
| CACTCCTGCCATTACACCAA+AGG | + | chr1_3:9050837-9050856 | None:intergenic | 50.0% | |
| ATCGGAGCTTGTCGGAACTA+AGG | - | chr1_3:9051411-9051430 | Msa0102300:CDS | 50.0% | |
| GCTTGTCGGAACTAAGGACA+AGG | - | chr1_3:9051417-9051436 | Msa0102300:CDS | 50.0% | |
| GGTTTACGAACTCTCACACC+CGG | + | chr1_3:9052307-9052326 | None:intergenic | 50.0% | |
| CTTGAAGTTGTGCTAGAGGC+AGG | + | chr1_3:9052391-9052410 | None:intergenic | 50.0% | |
| AACCAGAAGCCTCCTATAGC+TGG | - | chr1_3:9052553-9052572 | Msa0102300:intron | 50.0% | |
| AACCAGCTATAGGAGGCTTC+TGG | + | chr1_3:9052558-9052577 | None:intergenic | 50.0% | |
| CTACTGGGTTCCTACTGATC+TGG | + | chr1_3:9052803-9052822 | None:intergenic | 50.0% | |
| CGTGAAGACCTGCTATACAG+AGG | + | chr1_3:9053020-9053039 | None:intergenic | 50.0% | |
| TGAAGTGAATCTGGCGGTGG+CGG | + | chr1_3:9050079-9050098 | None:intergenic | 55.0% | |
| CACAAGCGCCCAGGTAAGAA+AGG | + | chr1_3:9050630-9050649 | None:intergenic | 55.0% | |
| GTCGGAACTAAGGACAAGGG+CGG | - | chr1_3:9051421-9051440 | Msa0102300:CDS | 55.0% | |
| TCGGAACTAAGGACAAGGGC+GGG | - | chr1_3:9051422-9051441 | Msa0102300:CDS | 55.0% | |
| !! | TGAACTACCTGAGCGGACTG+AGG | + | chr1_3:9051545-9051564 | None:intergenic | 55.0% |
| TCGTAAACCTGCACCTGCCA+AGG | - | chr1_3:9052318-9052337 | Msa0102300:intron | 55.0% | |
| CGTAAACCTGCACCTGCCAA+GGG | - | chr1_3:9052319-9052338 | Msa0102300:intron | 55.0% | |
| GACGGGGGTTCTTCAACTTG+TGG | + | chr1_3:9052367-9052386 | None:intergenic | 55.0% | |
| TTGTGCTAGAGGCAGGAGAC+GGG | + | chr1_3:9052384-9052403 | None:intergenic | 55.0% | |
| GTTGTGCTAGAGGCAGGAGA+CGG | + | chr1_3:9052385-9052404 | None:intergenic | 55.0% | |
| ! | GGGGCTACTTTAGGAGCTTG+TGG | + | chr1_3:9052454-9052473 | None:intergenic | 55.0% |
| ! | GCAACAGGAGGGGCTACTTT+AGG | + | chr1_3:9052463-9052482 | None:intergenic | 55.0% |
| AAAGTAGCCCCTCCTGTTGC+AGG | - | chr1_3:9052463-9052482 | Msa0102300:intron | 55.0% | |
| AAGCAGCTACAGGAGGCTTC+TGG | + | chr1_3:9052528-9052547 | None:intergenic | 55.0% | |
| !! | CATCGGCTCCTCTGTATAGC+AGG | - | chr1_3:9053009-9053028 | Msa0102300:five_prime_UTR | 55.0% |
| AGGAAGATCGGCGACGGCAA+CGG | + | chr1_3:9050044-9050063 | None:intergenic | 60.0% | |
| TGGTGGAGGAAGATCGGCGA+CGG | + | chr1_3:9050050-9050069 | None:intergenic | 60.0% | |
| !! | TGGCGGTGGTGGAGGAAGAT+CGG | + | chr1_3:9050056-9050075 | None:intergenic | 60.0% |
| ATTGCAGCAACGACCGGGAC+CGG | - | chr1_3:9052285-9052304 | Msa0102300:CDS | 60.0% | |
| GTTCTGTAGCAGCGGCTGGT+TGG | + | chr1_3:9052345-9052364 | None:intergenic | 60.0% | |
| ! | TGTGGTTCTGTAGCAGCGGC+TGG | + | chr1_3:9052349-9052368 | None:intergenic | 60.0% |
| TGTGCTAGAGGCAGGAGACG+GGG | + | chr1_3:9052383-9052402 | None:intergenic | 60.0% | |
| ! | AGTGAATCTGGCGGTGGCGG+TGG | + | chr1_3:9050076-9050095 | None:intergenic | 65.0% |
| ACCAGCACCTCAGTCCGCTC+AGG | - | chr1_3:9051535-9051554 | Msa0102300:CDS | 65.0% | |
| !! | ACCTGAGCGGACTGAGGTGC+TGG | + | chr1_3:9051539-9051558 | None:intergenic | 65.0% |
| TTGCAGCAACGACCGGGACC+GGG | - | chr1_3:9052286-9052305 | Msa0102300:CDS | 65.0% | |
| CGAACTCTCACACCCGGTCC+CGG | + | chr1_3:9052301-9052320 | None:intergenic | 65.0% | |
| GTGCTAGAGGCAGGAGACGG+GGG | + | chr1_3:9052382-9052401 | None:intergenic | 65.0% | |
| ! | GAATCTGGCGGTGGCGGTGG+CGG | + | chr1_3:9050073-9050092 | None:intergenic | 70.0% |
| ! | GGTTGGCCCTTGGCAGGTGC+AGG | + | chr1_3:9052328-9052347 | None:intergenic | 70.0% |
| ! | AGCAGCGGCTGGTTGGCCCT+TGG | + | chr1_3:9052338-9052357 | None:intergenic | 70.0% |
| ! | GCGGCTGGTTGGCCCTTGGC+AGG | + | chr1_3:9052334-9052353 | None:intergenic | 75.0% |
| !! | GGTGGCGGTGGCGGTGGTGG+AGG | + | chr1_3:9050064-9050083 | None:intergenic | 80.0% |
| !! | TCTGGCGGTGGCGGTGGCGG+TGG | + | chr1_3:9050070-9050089 | None:intergenic | 80.0% |
| !! | GGCGGTGGCGGTGGCGGTGG+TGG | + | chr1_3:9050067-9050086 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9049797 | 9053125 | 9049797 | ID=Msa0102300;Name=Msa0102300 |
| chr1_3 | mRNA | 9049797 | 9053125 | 9049797 | ID=Msa0102300-mRNA-1;Parent=Msa0102300;Name=Msa0102300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=315|1|1|1|0.66|0.71|7|303|330 |
| chr1_3 | exon | 9049797 | 9050630 | 9049797 | ID=Msa0102300-mRNA-1:exon:3598;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9051366 | 9051575 | 9051366 | ID=Msa0102300-mRNA-1:exon:3597;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9051664 | 9051727 | 9051664 | ID=Msa0102300-mRNA-1:exon:3596;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9051816 | 9051872 | 9051816 | ID=Msa0102300-mRNA-1:exon:3595;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9051972 | 9052070 | 9051972 | ID=Msa0102300-mRNA-1:exon:3594;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9052274 | 9052314 | 9052274 | ID=Msa0102300-mRNA-1:exon:3593;Parent=Msa0102300-mRNA-1 |
| chr1_3 | exon | 9052820 | 9053125 | 9052820 | ID=Msa0102300-mRNA-1:exon:3592;Parent=Msa0102300-mRNA-1 |
| chr1_3 | five_prime_UTR | 9052820 | 9053125 | 9052820 | ID=Msa0102300-mRNA-1:five_prime_utr;Parent=Msa0102300-mRNA-1 |
| chr1_3 | five_prime_UTR | 9052306 | 9052314 | 9052306 | ID=Msa0102300-mRNA-1:five_prime_utr;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9052274 | 9052305 | 9052274 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9051972 | 9052070 | 9051972 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9051816 | 9051872 | 9051816 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9051664 | 9051727 | 9051664 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9051366 | 9051575 | 9051366 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | CDS | 9050100 | 9050630 | 9050100 | ID=Msa0102300-mRNA-1:cds;Parent=Msa0102300-mRNA-1 |
| chr1_3 | three_prime_UTR | 9049797 | 9050099 | 9049797 | ID=Msa0102300-mRNA-1:three_prime_utr;Parent=Msa0102300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
