Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004200 | sp|B6ETT4|SYT2_ARATH | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004200 | Msa0147460 | 0.901937 | 1.614801e-78 | -8.615850e-47 |
| Msa0004200 | Msa1377160 | 0.805759 | 1.143231e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004200 | MtrunA17_Chr1g0156811 | 98.505 | 535 | 8 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1078 |
| Msa0004200 | MtrunA17_Chr1g0199571 | 52.844 | 545 | 244 | 5 | 1 | 534 | 1 | 543 | 0.0 | 569 |
| Msa0004200 | MtrunA17_Chr4g0037111 | 77.987 | 318 | 70 | 0 | 18 | 335 | 18 | 335 | 0.0 | 534 |
| Msa0004200 | MtrunA17_Chr4g0037121 | 68.878 | 196 | 57 | 2 | 342 | 534 | 1 | 195 | 6.84e-95 | 287 |
| Msa0004200 | MtrunA17_Chr4g0064531 | 31.191 | 529 | 319 | 12 | 40 | 532 | 38 | 557 | 1.37e-75 | 249 |
| Msa0004200 | MtrunA17_Chr7g0246311 | 32.945 | 343 | 219 | 6 | 59 | 395 | 58 | 395 | 5.85e-59 | 204 |
| Msa0004200 | MtrunA17_Chr3g0137471 | 28.647 | 569 | 306 | 18 | 40 | 532 | 38 | 582 | 2.42e-57 | 201 |
| Msa0004200 | MtrunA17_Chr8g0351231 | 32.020 | 406 | 255 | 11 | 1 | 395 | 1 | 396 | 2.94e-54 | 191 |
| Msa0004200 | MtrunA17_Chr4g0037181 | 55.856 | 111 | 41 | 2 | 342 | 449 | 1 | 106 | 1.81e-31 | 119 |
| Msa0004200 | MtrunA17_Chr7g0249671 | 61.250 | 80 | 29 | 2 | 453 | 531 | 2 | 80 | 1.54e-20 | 85.9 |
| Msa0004200 | MtrunA17_Chr2g0313621 | 26.871 | 294 | 185 | 11 | 67 | 336 | 72 | 359 | 5.73e-19 | 90.9 |
| Msa0004200 | MtrunA17_Chr6g0478401 | 41.573 | 89 | 47 | 3 | 255 | 343 | 13 | 96 | 3.18e-13 | 68.2 |
| Msa0004200 | MtrunA17_Chr6g0484401 | 20.537 | 521 | 334 | 23 | 69 | 531 | 97 | 595 | 5.01e-13 | 72.0 |
| Msa0004200 | MtrunA17_Chr3g0111361 | 40.449 | 89 | 48 | 3 | 255 | 343 | 1 | 84 | 3.02e-11 | 62.0 |
| Msa0004200 | MtrunA17_Chr2g0280981 | 38.824 | 85 | 47 | 3 | 259 | 343 | 4 | 83 | 8.34e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004200 | AT1G20080.2 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Msa0004200 | AT1G20080.3 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Msa0004200 | AT1G20080.4 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Msa0004200 | AT1G20080.1 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Msa0004200 | AT1G20080.5 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 827 |
| Msa0004200 | AT2G20990.1 | 69.573 | 539 | 159 | 2 | 1 | 534 | 1 | 539 | 0.0 | 792 |
| Msa0004200 | AT2G20990.2 | 66.607 | 563 | 159 | 3 | 1 | 534 | 1 | 563 | 0.0 | 778 |
| Msa0004200 | AT2G20990.3 | 64.991 | 577 | 159 | 3 | 1 | 534 | 1 | 577 | 0.0 | 775 |
| Msa0004200 | AT5G04220.2 | 52.222 | 540 | 251 | 6 | 1 | 534 | 1 | 539 | 0.0 | 557 |
| Msa0004200 | AT5G04220.3 | 54.184 | 478 | 212 | 6 | 63 | 534 | 1 | 477 | 0.0 | 523 |
| Msa0004200 | AT2G21010.1 | 62.016 | 258 | 93 | 2 | 278 | 534 | 1 | 254 | 8.52e-113 | 335 |
| Msa0004200 | AT5G04220.1 | 50.000 | 316 | 151 | 6 | 225 | 534 | 3 | 317 | 9.39e-98 | 299 |
| Msa0004200 | AT1G05500.1 | 30.783 | 562 | 338 | 13 | 11 | 532 | 1 | 551 | 5.57e-81 | 263 |
| Msa0004200 | AT1G05500.2 | 32.134 | 417 | 243 | 10 | 146 | 532 | 1 | 407 | 2.28e-58 | 200 |
| Msa0004200 | AT3G61050.2 | 32.394 | 355 | 229 | 6 | 60 | 408 | 59 | 408 | 8.29e-55 | 192 |
| Msa0004200 | AT3G61050.1 | 32.394 | 355 | 229 | 6 | 60 | 408 | 59 | 408 | 8.29e-55 | 192 |
| Msa0004200 | AT2G21040.1 | 62.069 | 87 | 33 | 0 | 401 | 487 | 2 | 88 | 1.52e-34 | 131 |
| Msa0004200 | AT3G60950.1 | 26.351 | 296 | 170 | 8 | 73 | 366 | 41 | 290 | 4.13e-21 | 97.4 |
| Msa0004200 | AT3G61030.1 | 25.338 | 296 | 166 | 8 | 73 | 366 | 41 | 283 | 5.21e-19 | 90.5 |
| Msa0004200 | AT3G14590.2 | 27.027 | 296 | 184 | 11 | 67 | 336 | 68 | 357 | 1.76e-17 | 86.3 |
| Msa0004200 | AT3G14590.1 | 27.027 | 296 | 184 | 11 | 67 | 336 | 23 | 312 | 2.04e-17 | 86.3 |
| Msa0004200 | AT3G14590.3 | 27.027 | 296 | 184 | 11 | 67 | 336 | 37 | 326 | 2.21e-17 | 86.3 |
| Msa0004200 | AT1G48590.4 | 42.105 | 95 | 49 | 4 | 249 | 343 | 1 | 89 | 2.42e-14 | 71.6 |
| Msa0004200 | AT1G48590.1 | 42.105 | 95 | 49 | 4 | 249 | 343 | 1 | 89 | 2.42e-14 | 71.6 |
| Msa0004200 | AT1G48590.2 | 42.105 | 95 | 49 | 4 | 249 | 343 | 32 | 120 | 3.33e-14 | 72.0 |
| Msa0004200 | AT3G14590.5 | 26.199 | 271 | 170 | 10 | 92 | 336 | 5 | 271 | 2.94e-13 | 72.8 |
| Msa0004200 | AT2G01540.1 | 40.909 | 88 | 47 | 3 | 256 | 343 | 3 | 85 | 1.94e-12 | 66.2 |
| Msa0004200 | AT3G14590.4 | 26.316 | 247 | 155 | 9 | 113 | 336 | 27 | 269 | 7.59e-12 | 68.6 |
| Msa0004200 | AT3G17980.1 | 39.130 | 92 | 51 | 3 | 252 | 343 | 10 | 96 | 2.24e-11 | 63.2 |
| Msa0004200 | AT1G73580.1 | 41.667 | 96 | 51 | 3 | 255 | 350 | 4 | 94 | 2.47e-11 | 62.8 |
Find 121 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCCACATGTTGATTT+TGG | 0.151447 | 1_1:+6658110 | Msa0004200:intron |
| TCGCAAACATAAAATCTTAT+TGG | 0.176557 | 1_1:-6660827 | None:intergenic |
| TTTATCCATAAGGGTATTTC+TGG | 0.176766 | 1_1:-6657113 | None:intergenic |
| TACTGACCAATCATTCATTA+TGG | 0.189172 | 1_1:-6660333 | None:intergenic |
| GATAACTCATCATCCTTAAA+AGG | 0.195494 | 1_1:-6659393 | None:intergenic |
| CTTCAACATCTTCAGCTTCA+TGG | 0.205719 | 1_1:-6659488 | None:intergenic |
| TGTCTATTCCTGGTCTTTAC+AGG | 0.225371 | 1_1:+6658159 | Msa0004200:CDS |
| TTTGCGCGGCTTATATTTAA+AGG | 0.251485 | 1_1:+6659531 | Msa0004200:CDS |
| GGAATTTGTTCAGCAATAAT+AGG | 0.273016 | 1_1:-6657433 | None:intergenic |
| TTAAACTCTTCATTCCATTC+TGG | 0.286995 | 1_1:-6658817 | None:intergenic |
| TTTGTGGCCTAAGGCCTTAC+AGG | 0.290174 | 1_1:+6658513 | Msa0004200:CDS |
| TACCATACCTTGTTCAAATA+AGG | 0.292069 | 1_1:-6657287 | None:intergenic |
| AGTACTACTCTGGTTTAGTT+TGG | 0.301538 | 1_1:+6656556 | Msa0004200:five_prime_UTR |
| GCTTAGAAAGAAAGATATAA+TGG | 0.304229 | 1_1:+6658708 | Msa0004200:CDS |
| AAATATGACAGTGTACTATT+TGG | 0.304603 | 1_1:+6660740 | Msa0004200:three_prime_UTR |
| TGATGAAAAGGAATTGATTA+TGG | 0.312221 | 1_1:+6657640 | Msa0004200:CDS |
| TTTCTTGTTTGCAGCTTGAT+TGG | 0.313508 | 1_1:+6657237 | Msa0004200:intron |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 1_1:-6657689 | None:intergenic |
| GGATCCTACATTTACTCCTT+TGG | 0.316311 | 1_1:+6657055 | Msa0004200:intron |
| CATGAGAGACACATAAATAT+TGG | 0.316964 | 1_1:-6657997 | None:intergenic |
| TGCTTCCAGAAATACCCTTA+TGG | 0.317531 | 1_1:+6657108 | Msa0004200:CDS |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.324968 | 1_1:+6657698 | Msa0004200:CDS |
| TAATGCTTAATGTTTATGAT+TGG | 0.327754 | 1_1:+6658872 | Msa0004200:CDS |
| ATGATTGGTCAGTAGTAAAT+AGG | 0.332208 | 1_1:+6660342 | Msa0004200:three_prime_UTR |
| AATTTAAGAGTAAGTAGTTT+TGG | 0.333174 | 1_1:-6659294 | None:intergenic |
| GGCCTTACAGGTGCAAATAA+TGG | 0.335538 | 1_1:+6658525 | Msa0004200:CDS |
| GCGCATAATGTTGAAGCCTT+TGG | 0.341358 | 1_1:+6657953 | Msa0004200:CDS |
| TTCTCATTCTCAGGATCATT+AGG | 0.353471 | 1_1:-6659333 | None:intergenic |
| TGCATAATATATGTAAGATC+TGG | 0.357058 | 1_1:-6660595 | None:intergenic |
| TTATGGAATTATCAATGAAA+TGG | 0.362011 | 1_1:+6657657 | Msa0004200:CDS |
| ACTGACCAATCATTCATTAT+GGG | 0.371685 | 1_1:-6660332 | None:intergenic |
| TTGAGTTTAAGTTTCACATA+AGG | 0.380151 | 1_1:-6658742 | None:intergenic |
| AACATAAAGTCTCTCATTGA+TGG | 0.380639 | 1_1:-6660061 | None:intergenic |
| TGAGTTTAAGTTTCACATAA+GGG | 0.381669 | 1_1:-6658741 | None:intergenic |
| TGGCAATTGTGCAGCATGTA+AGG | 0.397069 | 1_1:+6659983 | Msa0004200:intron |
| TGAAATGTTTCACCCCATCT+TGG | 0.402322 | 1_1:-6660018 | None:intergenic |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 1_1:+6658477 | Msa0004200:intron |
| ACTTCACTTGGATTGTTGAT+TGG | 0.408025 | 1_1:+6656705 | Msa0004200:CDS |
| GCAGATGCAATGTCTATTCC+TGG | 0.408163 | 1_1:+6658149 | Msa0004200:CDS |
| ATGCATGTAACATGGAAGTT+TGG | 0.411112 | 1_1:+6660392 | Msa0004200:three_prime_UTR |
| AATGCTTAATGTTTATGATT+GGG | 0.413882 | 1_1:+6658873 | Msa0004200:CDS |
| ATCCATTATTTGCACCTGTA+AGG | 0.414927 | 1_1:-6658527 | None:intergenic |
| CTTAGAAAGAAAGATATAAT+GGG | 0.420642 | 1_1:+6658709 | Msa0004200:CDS |
| CAACTTCAATATCAATGTCT+AGG | 0.423562 | 1_1:-6656632 | None:intergenic |
| CCACTAGCAGGTGTTCCTTC+CGG | 0.429816 | 1_1:-6659444 | None:intergenic |
| ATGCAGCAGGCCTAACTTTG+AGG | 0.430649 | 1_1:-6660100 | None:intergenic |
| TAATGTTTATGATTGGGAAC+AGG | 0.431633 | 1_1:+6658879 | Msa0004200:CDS |
| GTTTGGAAAGGCTGAGAAGA+TGG | 0.433941 | 1_1:+6659230 | Msa0004200:intron |
| TAACATACACGGTCATAGTC+TGG | 0.434799 | 1_1:-6657140 | None:intergenic |
| CCACGTGACTTCTCATTCTC+AGG | 0.435478 | 1_1:-6659342 | None:intergenic |
| TGAATTTGAAGAACTTAACT+TGG | 0.437517 | 1_1:+6657477 | Msa0004200:CDS |
| TGGATTGCGAGCAACAGTTC+AGG | 0.437684 | 1_1:+6657718 | Msa0004200:CDS |
| GTGTTACCTTTGGATGCAGC+AGG | 0.438661 | 1_1:-6660113 | None:intergenic |
| TTTGGTGCAAGCTCTTTCAA+TGG | 0.438789 | 1_1:-6659267 | None:intergenic |
| GAATTATCAATGAAATGGGC+TGG | 0.454207 | 1_1:+6657662 | Msa0004200:CDS |
| TTCACATGAAGAATTCCAAC+TGG | 0.456262 | 1_1:-6658667 | None:intergenic |
| AGTGTATAGCACTGATGAAA+AGG | 0.456613 | 1_1:+6657628 | Msa0004200:CDS |
| AGTTTCTTTCATATCAAAAG+TGG | 0.460270 | 1_1:-6656586 | None:intergenic |
| TTAAATATAAGCCGCGCAAA+CGG | 0.466177 | 1_1:-6659528 | None:intergenic |
| CTATATATACCTTGAAAAGT+TGG | 0.467929 | 1_1:-6657511 | None:intergenic |
| GCATAATATATGTAAGATCT+GGG | 0.470763 | 1_1:-6660594 | None:intergenic |
| CATGAAGCTGAAGATGTTGA+AGG | 0.474251 | 1_1:+6659489 | Msa0004200:CDS |
| TTTGGAATTGGAACTTCACT+TGG | 0.478660 | 1_1:+6656693 | Msa0004200:CDS |
| TTATGTGTCTCTCATGGAAA+AGG | 0.484817 | 1_1:+6658004 | Msa0004200:CDS |
| AAACTGAATAAATCAATGCT+TGG | 0.488339 | 1_1:+6660705 | Msa0004200:three_prime_UTR |
| ATAAATTTGTTGAGTGTATG+TGG | 0.489433 | 1_1:+6657264 | Msa0004200:CDS |
| TATGGAATTATCAATGAAAT+GGG | 0.501349 | 1_1:+6657658 | Msa0004200:CDS |
| TCAGGAAACTCTTGGATATG+TGG | 0.502591 | 1_1:+6660206 | Msa0004200:intron |
| AGAACCCCATAATGAATGAT+TGG | 0.503884 | 1_1:+6660327 | Msa0004200:exon |
| AACTTCAATATCAATGTCTA+GGG | 0.503960 | 1_1:-6656631 | None:intergenic |
| ACATAAAGTCTCTCATTGAT+GGG | 0.508044 | 1_1:-6660060 | None:intergenic |
| ACTTAGTTAGTACTAGTAGT+AGG | 0.508370 | 1_1:+6656606 | Msa0004200:five_prime_UTR |
| ATAAGTGCATCCTCAAAGTT+AGG | 0.515045 | 1_1:+6660090 | Msa0004200:CDS |
| ATTTGCACCTGTAAGGCCTT+AGG | 0.516595 | 1_1:-6658520 | None:intergenic |
| TGGTCTTTACAGGATTGTCC+AGG | 0.529396 | 1_1:+6658169 | Msa0004200:CDS |
| AATTATCAATGAAATGGGCT+GGG | 0.534000 | 1_1:+6657663 | Msa0004200:CDS |
| AACATTTCAATTTACGCTAG+AGG | 0.535589 | 1_1:+6660032 | Msa0004200:CDS |
| AACAATGATACATACTGTGA+TGG | 0.538427 | 1_1:-6658550 | None:intergenic |
| AGATTCAAATTGAGCTTCAG+TGG | 0.538926 | 1_1:+6660304 | Msa0004200:CDS |
| CAATATTTATGTGTCTCTCA+TGG | 0.544537 | 1_1:+6657998 | Msa0004200:CDS |
| TCAGCTTCTTGCTCAACCAA+AGG | 0.547039 | 1_1:-6657071 | None:intergenic |
| CTTTCAATCAATAGATGTCA+AGG | 0.552952 | 1_1:+6656746 | Msa0004200:CDS |
| ACAAGAACTTGAATCCAGAA+TGG | 0.555590 | 1_1:+6658803 | Msa0004200:CDS |
| TTTGGAAAGGCTGAGAAGAT+GGG | 0.557070 | 1_1:+6659231 | Msa0004200:CDS |
| AACTTCCATGTTACATGCAT+AGG | 0.557803 | 1_1:-6660389 | None:intergenic |
| TTGGCGAAACAAGGAAAACT+AGG | 0.559504 | 1_1:-6657978 | None:intergenic |
| GAATTCAGAAGACACAGAAA+AGG | 0.566484 | 1_1:+6659419 | Msa0004200:CDS |
| AAAAGCAAACCACCACTAGC+AGG | 0.570645 | 1_1:-6659456 | None:intergenic |
| TCAACCAAAGGAGTAAATGT+AGG | 0.571099 | 1_1:-6657059 | None:intergenic |
| TATATACCTTGAAAAGTTGG+TGG | 0.574416 | 1_1:-6657508 | None:intergenic |
| AGAAGACACAGAAAAGGCTC+CGG | 0.576031 | 1_1:+6659425 | Msa0004200:CDS |
| GGTGGTTAACTAGTTTGGAA+AGG | 0.576754 | 1_1:+6659218 | Msa0004200:intron |
| GAATTTGAAGAACTTAACTT+GGG | 0.579840 | 1_1:+6657478 | Msa0004200:CDS |
| CAAGGAAAACTAGGAACCAA+AGG | 0.582613 | 1_1:-6657969 | None:intergenic |
| CTGACCAATCATTCATTATG+GGG | 0.585607 | 1_1:-6660331 | None:intergenic |
| GTTAGGCCTGCTGCATCCAA+AGG | 0.591098 | 1_1:+6660107 | Msa0004200:CDS |
| CCACACAAGAAGTACTACTC+TGG | 0.593938 | 1_1:+6656546 | Msa0004200:five_prime_UTR |
| CCAGAGTAGTACTTCTTGTG+TGG | 0.597948 | 1_1:-6656546 | None:intergenic |
| GTCACGTGGAGAGCTTATTG+TGG | 0.600730 | 1_1:+6659356 | Msa0004200:CDS |
| TTTAATCCAAAATCAACATG+TGG | 0.608108 | 1_1:-6658116 | None:intergenic |
| GACACAGAAAAGGCTCCGGA+AGG | 0.610551 | 1_1:+6659429 | Msa0004200:CDS |
| ACCACACAAATCCGTTTGCG+CGG | 0.615343 | 1_1:+6659517 | Msa0004200:CDS |
| CATAAAGTCTCTCATTGATG+GGG | 0.616421 | 1_1:-6660059 | None:intergenic |
| ACATAAATATTGGCGAAACA+AGG | 0.620390 | 1_1:-6657987 | None:intergenic |
| CCGGAAGGAACACCTGCTAG+TGG | 0.626646 | 1_1:+6659444 | Msa0004200:CDS |
| ATAAAGTCTCTCATTGATGG+GGG | 0.628586 | 1_1:-6660058 | None:intergenic |
| GCGGCTTATATTTAAAGGCG+AGG | 0.630495 | 1_1:+6659536 | Msa0004200:CDS |
| GTACTCCTATGCATGTAACA+TGG | 0.631222 | 1_1:+6660384 | Msa0004200:three_prime_UTR |
| AGAAAGAAAGATATAATGGG+AGG | 0.645260 | 1_1:+6658712 | Msa0004200:CDS |
| TATGTGGCCTTATTTGAACA+AGG | 0.651291 | 1_1:+6657280 | Msa0004200:CDS |
| CCTGAGAATGAGAAGTCACG+TGG | 0.651349 | 1_1:+6659342 | Msa0004200:CDS |
| TTGGTCAGTAGTAAATAGGA+TGG | 0.653068 | 1_1:+6660346 | Msa0004200:three_prime_UTR |
| GAAGGAACACCTGCTAGTGG+TGG | 0.656477 | 1_1:+6659447 | Msa0004200:CDS |
| ATGGAATGAAGAGTTTAATG+TGG | 0.658297 | 1_1:+6658822 | Msa0004200:CDS |
| TGGACAATCCTGTAAAGACC+AGG | 0.661769 | 1_1:-6658167 | None:intergenic |
| CATAATATATGTAAGATCTG+GGG | 0.677293 | 1_1:-6660593 | None:intergenic |
| ATAGGAGTACAAACTTACAA+TGG | 0.677642 | 1_1:-6660371 | None:intergenic |
| GCCGCGCAAACGGATTTGTG+TGG | 0.677878 | 1_1:-6659518 | None:intergenic |
| AAAGGCTTCAACATTATGCG+CGG | 0.685990 | 1_1:-6657951 | None:intergenic |
| TAAAGTCTCTCATTGATGGG+GGG | 0.690358 | 1_1:-6660057 | None:intergenic |
| AAATTAGAAAAGAAAAGACA+AGG | 0.696021 | 1_1:-6656495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAACTAAAATATA+AGG | - | chr1_1:6656997-6657016 | None:intergenic | 10.0% |
| !! | TTCTTGATATATTAAAAATA+TGG | + | chr1_1:6657013-6657032 | Msa0004200:intron | 10.0% |
| !! | AATAATAATAATAACATACA+CGG | - | chr1_1:6657154-6657173 | None:intergenic | 10.0% |
| !!! | ATTGATTTTCAAAATTTTAT+TGG | + | chr1_1:6657322-6657341 | Msa0004200:intron | 10.0% |
| !! | TTAGAATAATAACATTTAAT+AGG | - | chr1_1:6657826-6657845 | None:intergenic | 10.0% |
| !! | TTTCATATTAAATTATGATT+TGG | - | chr1_1:6660657-6660676 | None:intergenic | 10.0% |
| !!! | AACTATACTATTTTTTTAGA+GGG | - | chr1_1:6657204-6657223 | None:intergenic | 15.0% |
| !! | TCAAATATAAACAAAAAAAG+CGG | + | chr1_1:6657754-6657773 | Msa0004200:intron | 15.0% |
| !!! | GTTAAATTTTGCTTATATTT+TGG | - | chr1_1:6657794-6657813 | None:intergenic | 15.0% |
| !! | TTATGTTATAAACTCATAAA+GGG | - | chr1_1:6658580-6658599 | None:intergenic | 15.0% |
| !!! | TCAAAAATTTTAAAAAGTTG+AGG | + | chr1_1:6659043-6659062 | Msa0004200:intron | 15.0% |
| !!! | CAAAAATTTTAAAAAGTTGA+GGG | + | chr1_1:6659044-6659063 | Msa0004200:intron | 15.0% |
| !!! | AAAAATTTTAAAAAGTTGAG+GGG | + | chr1_1:6659045-6659064 | Msa0004200:intron | 15.0% |
| !! | TAAAGTAAGTATAGATTAAA+AGG | - | chr1_1:6659876-6659895 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTGAAAATG+TGG | + | chr1_1:6660418-6660437 | Msa0004200:three_prime_UTR | 15.0% |
| !!! | TTCCAAATCATAATTTTTTT+TGG | + | chr1_1:6660555-6660574 | Msa0004200:three_prime_UTR | 15.0% |
| !! | AAATTAGAAAAGAAAAGACA+AGG | - | chr1_1:6656498-6656517 | None:intergenic | 20.0% |
| !!! | CAACTATACTATTTTTTTAG+AGG | - | chr1_1:6657205-6657224 | None:intergenic | 20.0% |
| !! | GTTGATCCAAATATATAATA+TGG | + | chr1_1:6657592-6657611 | Msa0004200:intron | 20.0% |
| !! | TTATGGAATTATCAATGAAA+TGG | + | chr1_1:6657657-6657676 | Msa0004200:CDS | 20.0% |
| !! | TATGGAATTATCAATGAAAT+GGG | + | chr1_1:6657658-6657677 | Msa0004200:CDS | 20.0% |
| !!! | TTTTTGTTTATATTTGAGTC+CGG | - | chr1_1:6657751-6657770 | None:intergenic | 20.0% |
| !!! | TTCATTTTCTGTTGTTAAAA+AGG | - | chr1_1:6657873-6657892 | None:intergenic | 20.0% |
| !! | CAAGAATAATATTAATGACA+TGG | - | chr1_1:6658215-6658234 | None:intergenic | 20.0% |
| !! | TACAAAAAAGATTTAGTGAT+CGG | + | chr1_1:6658241-6658260 | Msa0004200:intron | 20.0% |
| !!! | TTTAGCGATATTTTTCAAAT+CGG | + | chr1_1:6658313-6658332 | Msa0004200:intron | 20.0% |
| !! | GTTATGTTATAAACTCATAA+AGG | - | chr1_1:6658581-6658600 | None:intergenic | 20.0% |
| !! | TAATTAGCTGTTAATTAGAT+TGG | + | chr1_1:6658605-6658624 | Msa0004200:intron | 20.0% |
| !! | CTTAGAAAGAAAGATATAAT+GGG | + | chr1_1:6658709-6658728 | Msa0004200:CDS | 20.0% |
| !! | TAATGCTTAATGTTTATGAT+TGG | + | chr1_1:6658872-6658891 | Msa0004200:CDS | 20.0% |
| !! | AATGCTTAATGTTTATGATT+GGG | + | chr1_1:6658873-6658892 | Msa0004200:CDS | 20.0% |
| !!! | AAAACATTTAAAATCTCTTC+TGG | - | chr1_1:6659014-6659033 | None:intergenic | 20.0% |
| !!! | GAAGAGATTTTAAATGTTTT+TGG | + | chr1_1:6659014-6659033 | Msa0004200:intron | 20.0% |
| !!! | AATTTAAGAGTAAGTAGTTT+TGG | - | chr1_1:6659297-6659316 | None:intergenic | 20.0% |
| !! | TAATATATAGAAGAACTAGA+TGG | - | chr1_1:6659625-6659644 | None:intergenic | 20.0% |
| !! | TTAATCTATACTTACTTTAG+AGG | + | chr1_1:6659877-6659896 | Msa0004200:intron | 20.0% |
| !!! | ATACATAGTTTTATGTCTTA+TGG | + | chr1_1:6660149-6660168 | Msa0004200:intron | 20.0% |
| !!! | AATTTGAATCTTTCCATTTT+TGG | - | chr1_1:6660295-6660314 | None:intergenic | 20.0% |
| !! | TACTCATGAAAAAAGATAAA+AGG | + | chr1_1:6660475-6660494 | Msa0004200:three_prime_UTR | 20.0% |
| !! | CACCAAAAAAAATTATGATT+TGG | - | chr1_1:6660560-6660579 | None:intergenic | 20.0% |
| !!! | ATCATAATTTTTTTTGGTGT+CGG | + | chr1_1:6660561-6660580 | Msa0004200:three_prime_UTR | 20.0% |
| !! | TAATTTAATATGAAAACTCC+AGG | + | chr1_1:6660662-6660681 | Msa0004200:intron | 20.0% |
| !! | AATTTAATATGAAAACTCCA+GGG | + | chr1_1:6660663-6660682 | Msa0004200:intron | 20.0% |
| ! | AGTTTCTTTCATATCAAAAG+TGG | - | chr1_1:6656589-6656608 | None:intergenic | 25.0% |
| ! | AACTTCAATATCAATGTCTA+GGG | - | chr1_1:6656634-6656653 | None:intergenic | 25.0% |
| !!! | AGTACTATAGCTAGTTTTTT+AGG | + | chr1_1:6656669-6656688 | Msa0004200:CDS | 25.0% |
| !!! | ATAGCTAGTTTTTTAGGATT+TGG | + | chr1_1:6656675-6656694 | Msa0004200:CDS | 25.0% |
| !!! | AGTTTTTTAGGATTTGGAAT+TGG | + | chr1_1:6656681-6656700 | Msa0004200:CDS | 25.0% |
| ! | TAAAGTTGTGATCTGTAAAA+AGG | + | chr1_1:6656831-6656850 | Msa0004200:intron | 25.0% |
| !!! | TCTGGATTTTTTATCCATAA+GGG | - | chr1_1:6657125-6657144 | None:intergenic | 25.0% |
| !!! | ATAAATTTGTTGAGTGTATG+TGG | + | chr1_1:6657264-6657283 | Msa0004200:CDS | 25.0% |
| !! | TATGGTTAGTACAACTATTT+TGG | + | chr1_1:6657361-6657380 | Msa0004200:intron | 25.0% |
| !!! | TTTTGGTTGAATGTTGTTAT+AGG | + | chr1_1:6657378-6657397 | Msa0004200:intron | 25.0% |
| !! | ACTGAATCAATTTTGTACTT+TGG | - | chr1_1:6657457-6657476 | None:intergenic | 25.0% |
| ! | TGAATTTGAAGAACTTAACT+TGG | + | chr1_1:6657477-6657496 | Msa0004200:CDS | 25.0% |
| ! | GAATTTGAAGAACTTAACTT+GGG | + | chr1_1:6657478-6657497 | Msa0004200:CDS | 25.0% |
| ! | CTATATATACCTTGAAAAGT+TGG | - | chr1_1:6657514-6657533 | None:intergenic | 25.0% |
| ! | CTGCAACCATATTATATATT+TGG | - | chr1_1:6657601-6657620 | None:intergenic | 25.0% |
| ! | CAAATATATAATATGGTTGC+AGG | + | chr1_1:6657599-6657618 | Msa0004200:intron | 25.0% |
| ! | TGATGAAAAGGAATTGATTA+TGG | + | chr1_1:6657640-6657659 | Msa0004200:CDS | 25.0% |
| ! | TTAACTGCAACTATAATGTT+AGG | - | chr1_1:6657692-6657711 | None:intergenic | 25.0% |
| ! | AACATTTAATAGGATGAAGT+TGG | - | chr1_1:6657816-6657835 | None:intergenic | 25.0% |
| ! | AAAAGTCTTTAAATGATTGC+AGG | + | chr1_1:6657902-6657921 | Msa0004200:intron | 25.0% |
| ! | TTTAATCCAAAATCAACATG+TGG | - | chr1_1:6658119-6658138 | None:intergenic | 25.0% |
| !! | GATTTTGGATTAAAACTACT+TGG | + | chr1_1:6658125-6658144 | Msa0004200:CDS | 25.0% |
| ! | ATAGACCAAAATTGACAAAT+TGG | + | chr1_1:6658267-6658286 | Msa0004200:intron | 25.0% |
| !! | AGTTGATATAGAAACTGATT+CGG | + | chr1_1:6658353-6658372 | Msa0004200:intron | 25.0% |
| ! | TCAGGAAATTATAAAAGATC+AGG | + | chr1_1:6658477-6658496 | Msa0004200:intron | 25.0% |
| !!! | TTAGATTGGCTAATTTTACT+TGG | + | chr1_1:6658619-6658638 | Msa0004200:intron | 25.0% |
| !!! | TTTTACTTGGTTAATTTGTC+AGG | + | chr1_1:6658632-6658651 | Msa0004200:intron | 25.0% |
| !!! | TTTACTTGGTTAATTTGTCA+GGG | + | chr1_1:6658633-6658652 | Msa0004200:intron | 25.0% |
| ! | GCTTAGAAAGAAAGATATAA+TGG | + | chr1_1:6658708-6658727 | Msa0004200:CDS | 25.0% |
| !! | TGAGTTTAAGTTTCACATAA+GGG | - | chr1_1:6658744-6658763 | None:intergenic | 25.0% |
| !! | TTGAGTTTAAGTTTCACATA+AGG | - | chr1_1:6658745-6658764 | None:intergenic | 25.0% |
| ! | ATGCAAATTTAGACTAAAGT+TGG | + | chr1_1:6658918-6658937 | Msa0004200:intron | 25.0% |
| !!! | GTGAATGTTTTGGTTAAAAA+TGG | + | chr1_1:6658986-6659005 | Msa0004200:intron | 25.0% |
| !! | GAAATTTAAAATTTGCAGAC+TGG | - | chr1_1:6659101-6659120 | None:intergenic | 25.0% |
| ! | TTGCTTGATTAACATTCTAA+GGG | - | chr1_1:6659135-6659154 | None:intergenic | 25.0% |
| ! | ATTGCTTGATTAACATTCTA+AGG | - | chr1_1:6659136-6659155 | None:intergenic | 25.0% |
| ! | CATGCTTGAAAATATGTTAT+AGG | - | chr1_1:6659183-6659202 | None:intergenic | 25.0% |
| !! | AGTTATGTACAAACCTTTTA+AGG | + | chr1_1:6659380-6659399 | Msa0004200:CDS | 25.0% |
| ! | GATCTGATAAAATAATACCT+TGG | - | chr1_1:6659571-6659590 | None:intergenic | 25.0% |
| ! | GAAAGTCAACAAATCATAAT+CGG | - | chr1_1:6659652-6659671 | None:intergenic | 25.0% |
| !! | TCTAAAATATGTAACTGCTT+TGG | + | chr1_1:6659765-6659784 | Msa0004200:intron | 25.0% |
| ! | AAAAGGAAGAAATCAATAGT+TGG | - | chr1_1:6659859-6659878 | None:intergenic | 25.0% |
| ! | AATGGTTAAATCTCATTGAA+AGG | - | chr1_1:6659957-6659976 | None:intergenic | 25.0% |
| !!! | GAGATTTAACCATTGTTTTA+TGG | + | chr1_1:6659963-6659982 | Msa0004200:intron | 25.0% |
| !!! | TTAATACCTTGTTTTGAATC+AGG | + | chr1_1:6660188-6660207 | Msa0004200:intron | 25.0% |
| !!! | TCATAATTTTTTTTGGTGTC+GGG | + | chr1_1:6660562-6660581 | Msa0004200:three_prime_UTR | 25.0% |
| ! | CATAATATATGTAAGATCTG+GGG | - | chr1_1:6660596-6660615 | None:intergenic | 25.0% |
| ! | GCATAATATATGTAAGATCT+GGG | - | chr1_1:6660597-6660616 | None:intergenic | 25.0% |
| ! | TGCATAATATATGTAAGATC+TGG | - | chr1_1:6660598-6660617 | None:intergenic | 25.0% |
| ! | AAACTGAATAAATCAATGCT+TGG | + | chr1_1:6660705-6660724 | Msa0004200:three_prime_UTR | 25.0% |
| ! | AAATATGACAGTGTACTATT+TGG | + | chr1_1:6660740-6660759 | Msa0004200:three_prime_UTR | 25.0% |
| ! | TCGCAAACATAAAATCTTAT+TGG | - | chr1_1:6660830-6660849 | None:intergenic | 25.0% |
| ACTTAGTTAGTACTAGTAGT+AGG | + | chr1_1:6656606-6656625 | Msa0004200:five_prime_UTR | 30.0% | |
| CAACTTCAATATCAATGTCT+AGG | - | chr1_1:6656635-6656654 | None:intergenic | 30.0% | |
| CTTTCAATCAATAGATGTCA+AGG | + | chr1_1:6656746-6656765 | Msa0004200:CDS | 30.0% | |
| !! | TTTATCCATAAGGGTATTTC+TGG | - | chr1_1:6657116-6657135 | None:intergenic | 30.0% |
| !!! | GTCTGGATTTTTTATCCATA+AGG | - | chr1_1:6657126-6657145 | None:intergenic | 30.0% |
| TACCATACCTTGTTCAAATA+AGG | - | chr1_1:6657290-6657309 | None:intergenic | 30.0% | |
| ! | GGAATTTGTTCAGCAATAAT+AGG | - | chr1_1:6657436-6657455 | None:intergenic | 30.0% |
| TATATACCTTGAAAAGTTGG+TGG | - | chr1_1:6657511-6657530 | None:intergenic | 30.0% | |
| ! | AATTATCAATGAAATGGGCT+GGG | + | chr1_1:6657663-6657682 | Msa0004200:CDS | 30.0% |
| ! | ATAGTTGCAGTTAAAGCATT+TGG | + | chr1_1:6657698-6657717 | Msa0004200:CDS | 30.0% |
| AAAAAAGCGGTCATATTTAG+CGG | + | chr1_1:6657767-6657786 | Msa0004200:intron | 30.0% | |
| !! | TTAAAAAGGTGCATCGATTA+CGG | - | chr1_1:6657859-6657878 | None:intergenic | 30.0% |
| ACATAAATATTGGCGAAACA+AGG | - | chr1_1:6657990-6658009 | None:intergenic | 30.0% | |
| CATGAGAGACACATAAATAT+TGG | - | chr1_1:6658000-6658019 | None:intergenic | 30.0% | |
| CAATATTTATGTGTCTCTCA+TGG | + | chr1_1:6657998-6658017 | Msa0004200:CDS | 30.0% | |
| CATTTGTTCATCACAATGTT+AGG | - | chr1_1:6658055-6658074 | None:intergenic | 30.0% | |
| ! | AGTGACCAATTTGTCAATTT+TGG | - | chr1_1:6658275-6658294 | None:intergenic | 30.0% |
| AGGTTGCAAAAATGTATTTG+TGG | + | chr1_1:6658497-6658516 | Msa0004200:CDS | 30.0% | |
| AAAAATGTATTTGTGGCCTA+AGG | + | chr1_1:6658504-6658523 | Msa0004200:CDS | 30.0% | |
| AACAATGATACATACTGTGA+TGG | - | chr1_1:6658553-6658572 | None:intergenic | 30.0% | |
| !!! | AATTCCAACTGGTTTTTTCA+TGG | - | chr1_1:6658659-6658678 | None:intergenic | 30.0% |
| ! | AGAAAGAAAGATATAATGGG+AGG | + | chr1_1:6658712-6658731 | Msa0004200:CDS | 30.0% |
| TTAAACTCTTCATTCCATTC+TGG | - | chr1_1:6658820-6658839 | None:intergenic | 30.0% | |
| ATGGAATGAAGAGTTTAATG+TGG | + | chr1_1:6658822-6658841 | Msa0004200:CDS | 30.0% | |
| !!! | AGCATTAAGTTTTGAGATTC+TGG | - | chr1_1:6658859-6658878 | None:intergenic | 30.0% |
| TAATGTTTATGATTGGGAAC+AGG | + | chr1_1:6658879-6658898 | Msa0004200:CDS | 30.0% | |
| ! | AGCATGTTACTTATTTCCTA+TGG | + | chr1_1:6659197-6659216 | Msa0004200:intron | 30.0% |
| ! | ATGTTACTTATTTCCTATGG+TGG | + | chr1_1:6659200-6659219 | Msa0004200:intron | 30.0% |
| !!! | GTAAGTAGTTTTGGTTCATT+TGG | - | chr1_1:6659288-6659307 | None:intergenic | 30.0% |
| GATAACTCATCATCCTTAAA+AGG | - | chr1_1:6659396-6659415 | None:intergenic | 30.0% | |
| ACTTTCGATTTATTGCTATC+TGG | + | chr1_1:6659666-6659685 | Msa0004200:intron | 30.0% | |
| ACTAAGAAATAGATGACAAG+TGG | - | chr1_1:6659697-6659716 | None:intergenic | 30.0% | |
| !! | TCAAACAAACTCTAAAACAC+CGG | - | chr1_1:6659923-6659942 | None:intergenic | 30.0% |
| GAAAAATAGAGATCCAAGAT+GGG | + | chr1_1:6660005-6660024 | Msa0004200:CDS | 30.0% | |
| AAAAATAGAGATCCAAGATG+GGG | + | chr1_1:6660006-6660025 | Msa0004200:CDS | 30.0% | |
| AACATTTCAATTTACGCTAG+AGG | + | chr1_1:6660032-6660051 | Msa0004200:CDS | 30.0% | |
| ACATAAAGTCTCTCATTGAT+GGG | - | chr1_1:6660063-6660082 | None:intergenic | 30.0% | |
| AACATAAAGTCTCTCATTGA+TGG | - | chr1_1:6660064-6660083 | None:intergenic | 30.0% | |
| TTGATCTTTAGTGTTACCTT+TGG | - | chr1_1:6660126-6660145 | None:intergenic | 30.0% | |
| !! | CATCTTATTGACTCCAAAAA+TGG | + | chr1_1:6660279-6660298 | Msa0004200:CDS | 30.0% |
| ACTGACCAATCATTCATTAT+GGG | - | chr1_1:6660335-6660354 | None:intergenic | 30.0% | |
| TACTGACCAATCATTCATTA+TGG | - | chr1_1:6660336-6660355 | None:intergenic | 30.0% | |
| ! | ATGATTGGTCAGTAGTAAAT+AGG | + | chr1_1:6660342-6660361 | Msa0004200:three_prime_UTR | 30.0% |
| ! | ATAGGAGTACAAACTTACAA+TGG | - | chr1_1:6660374-6660393 | None:intergenic | 30.0% |
| !!! | CATAATTTTTTTTGGTGTCG+GGG | + | chr1_1:6660563-6660582 | Msa0004200:three_prime_UTR | 30.0% |
| ! | AGTACTACTCTGGTTTAGTT+TGG | + | chr1_1:6656556-6656575 | Msa0004200:five_prime_UTR | 35.0% |
| ! | TTTGGAATTGGAACTTCACT+TGG | + | chr1_1:6656693-6656712 | Msa0004200:CDS | 35.0% |
| ACTTCACTTGGATTGTTGAT+TGG | + | chr1_1:6656705-6656724 | Msa0004200:CDS | 35.0% | |
| !! | GGCATGTTTGTTATGATTTC+AGG | + | chr1_1:6657034-6657053 | Msa0004200:intron | 35.0% |
| TCAACCAAAGGAGTAAATGT+AGG | - | chr1_1:6657062-6657081 | None:intergenic | 35.0% | |
| ! | TTTCTTGTTTGCAGCTTGAT+TGG | + | chr1_1:6657237-6657256 | Msa0004200:intron | 35.0% |
| !! | TATGTGGCCTTATTTGAACA+AGG | + | chr1_1:6657280-6657299 | Msa0004200:CDS | 35.0% |
| ! | GGCATCTATGAGATTTTGTA+TGG | + | chr1_1:6657343-6657362 | Msa0004200:intron | 35.0% |
| !! | AGTGTATAGCACTGATGAAA+AGG | + | chr1_1:6657628-6657647 | Msa0004200:CDS | 35.0% |
| GAATTATCAATGAAATGGGC+TGG | + | chr1_1:6657662-6657681 | Msa0004200:CDS | 35.0% | |
| TTATGTGTCTCTCATGGAAA+AGG | + | chr1_1:6658004-6658023 | Msa0004200:CDS | 35.0% | |
| !! | ATATCCTCTCACTTGTTTTC+AGG | + | chr1_1:6658459-6658478 | Msa0004200:intron | 35.0% |
| ATTTCCTGAAAACAAGTGAG+AGG | - | chr1_1:6658466-6658485 | None:intergenic | 35.0% | |
| ATCCATTATTTGCACCTGTA+AGG | - | chr1_1:6658530-6658549 | None:intergenic | 35.0% | |
| TTCACATGAAGAATTCCAAC+TGG | - | chr1_1:6658670-6658689 | None:intergenic | 35.0% | |
| ACAAGAACTTGAATCCAGAA+TGG | + | chr1_1:6658803-6658822 | Msa0004200:CDS | 35.0% | |
| TTGGATGTAAGATTATCAGC+AGG | + | chr1_1:6658937-6658956 | Msa0004200:intron | 35.0% | |
| !!! | GGAAACTTTTAGAGTGTGTT+TGG | + | chr1_1:6658958-6658977 | Msa0004200:intron | 35.0% |
| !!! | ACTTTTAGAGTGTGTTTGGA+TGG | + | chr1_1:6658962-6658981 | Msa0004200:intron | 35.0% |
| ! | TAACATTCTAAGGGTGTGTT+TGG | - | chr1_1:6659126-6659145 | None:intergenic | 35.0% |
| TTCTCATTCTCAGGATCATT+AGG | - | chr1_1:6659336-6659355 | None:intergenic | 35.0% | |
| GAATTCAGAAGACACAGAAA+AGG | + | chr1_1:6659419-6659438 | Msa0004200:CDS | 35.0% | |
| TTAAATATAAGCCGCGCAAA+CGG | - | chr1_1:6659531-6659550 | None:intergenic | 35.0% | |
| TTTGCGCGGCTTATATTTAA+AGG | + | chr1_1:6659531-6659550 | Msa0004200:CDS | 35.0% | |
| ! | TAACTGCTTTGGATCATTGA+TGG | + | chr1_1:6659776-6659795 | Msa0004200:intron | 35.0% |
| TAGATACCAGTTTACTTGTG+CGG | + | chr1_1:6659811-6659830 | Msa0004200:intron | 35.0% | |
| GCACAATTGCCATAAAACAA+TGG | - | chr1_1:6659975-6659994 | None:intergenic | 35.0% | |
| GGAAAAATAGAGATCCAAGA+TGG | + | chr1_1:6660004-6660023 | Msa0004200:CDS | 35.0% | |
| ATAAAGTCTCTCATTGATGG+GGG | - | chr1_1:6660061-6660080 | None:intergenic | 35.0% | |
| CATAAAGTCTCTCATTGATG+GGG | - | chr1_1:6660062-6660081 | None:intergenic | 35.0% | |
| ATAAGTGCATCCTCAAAGTT+AGG | + | chr1_1:6660090-6660109 | Msa0004200:CDS | 35.0% | |
| GAGTTTCCTGATTCAAAACA+AGG | - | chr1_1:6660197-6660216 | None:intergenic | 35.0% | |
| !! | GTTTTGAATCAGGAAACTCT+TGG | + | chr1_1:6660198-6660217 | Msa0004200:intron | 35.0% |
| AGATTCAAATTGAGCTTCAG+TGG | + | chr1_1:6660304-6660323 | Msa0004200:CDS | 35.0% | |
| AGAACCCCATAATGAATGAT+TGG | + | chr1_1:6660327-6660346 | Msa0004200:exon | 35.0% | |
| CTGACCAATCATTCATTATG+GGG | - | chr1_1:6660334-6660353 | None:intergenic | 35.0% | |
| TTGGTCAGTAGTAAATAGGA+TGG | + | chr1_1:6660346-6660365 | Msa0004200:three_prime_UTR | 35.0% | |
| AACTTCCATGTTACATGCAT+AGG | - | chr1_1:6660392-6660411 | None:intergenic | 35.0% | |
| ATGCATGTAACATGGAAGTT+TGG | + | chr1_1:6660392-6660411 | Msa0004200:three_prime_UTR | 35.0% | |
| ! | AAACTCCAGGGTCAAATTTT+AGG | + | chr1_1:6660675-6660694 | Msa0004200:intron | 35.0% |
| TTTCTCCTAAAATTTGACCC+TGG | - | chr1_1:6660683-6660702 | None:intergenic | 35.0% | |
| GGATCCTACATTTACTCCTT+TGG | + | chr1_1:6657055-6657074 | Msa0004200:intron | 40.0% | |
| TGCTTCCAGAAATACCCTTA+TGG | + | chr1_1:6657108-6657127 | Msa0004200:CDS | 40.0% | |
| TAACATACACGGTCATAGTC+TGG | - | chr1_1:6657143-6657162 | None:intergenic | 40.0% | |
| !! | GGCCTTATTTGAACAAGGTA+TGG | + | chr1_1:6657285-6657304 | Msa0004200:intron | 40.0% |
| CAACAGTTCAGGTATTTCTC+CGG | + | chr1_1:6657729-6657748 | Msa0004200:intron | 40.0% | |
| AAAGGCTTCAACATTATGCG+CGG | - | chr1_1:6657954-6657973 | None:intergenic | 40.0% | |
| CAAGGAAAACTAGGAACCAA+AGG | - | chr1_1:6657972-6657991 | None:intergenic | 40.0% | |
| TTGGCGAAACAAGGAAAACT+AGG | - | chr1_1:6657981-6658000 | None:intergenic | 40.0% | |
| !!! | TTGCAGCCACATGTTGATTT+TGG | + | chr1_1:6658110-6658129 | Msa0004200:intron | 40.0% |
| ! | TGTCTATTCCTGGTCTTTAC+AGG | + | chr1_1:6658159-6658178 | Msa0004200:CDS | 40.0% |
| GTGCTATAGTATATGCTACC+TGG | - | chr1_1:6658190-6658209 | None:intergenic | 40.0% | |
| ! | TTTGGATGGCGTGAATGTTT+TGG | + | chr1_1:6658976-6658995 | Msa0004200:intron | 40.0% |
| CCAAACTAGTTAACCACCAT+AGG | - | chr1_1:6659216-6659235 | None:intergenic | 40.0% | |
| CCTATGGTGGTTAACTAGTT+TGG | + | chr1_1:6659213-6659232 | Msa0004200:intron | 40.0% | |
| ! | GGTGGTTAACTAGTTTGGAA+AGG | + | chr1_1:6659218-6659237 | Msa0004200:intron | 40.0% |
| TTTGGAAAGGCTGAGAAGAT+GGG | + | chr1_1:6659231-6659250 | Msa0004200:CDS | 40.0% | |
| ! | TTTGGTGCAAGCTCTTTCAA+TGG | - | chr1_1:6659270-6659289 | None:intergenic | 40.0% |
| CTTCAACATCTTCAGCTTCA+TGG | - | chr1_1:6659491-6659510 | None:intergenic | 40.0% | |
| CATGAAGCTGAAGATGTTGA+AGG | + | chr1_1:6659489-6659508 | Msa0004200:CDS | 40.0% | |
| TGAAATGTTTCACCCCATCT+TGG | - | chr1_1:6660021-6660040 | None:intergenic | 40.0% | |
| TAAAGTCTCTCATTGATGGG+GGG | - | chr1_1:6660060-6660079 | None:intergenic | 40.0% | |
| TCAGGAAACTCTTGGATATG+TGG | + | chr1_1:6660206-6660225 | Msa0004200:intron | 40.0% | |
| GTACTCCTATGCATGTAACA+TGG | + | chr1_1:6660384-6660403 | Msa0004200:three_prime_UTR | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | - | chr1_1:6660625-6660644 | None:intergenic | 40.0% |
| CCAGAGTAGTACTTCTTGTG+TGG | - | chr1_1:6656549-6656568 | None:intergenic | 45.0% | |
| !! | CCACACAAGAAGTACTACTC+TGG | + | chr1_1:6656546-6656565 | Msa0004200:five_prime_UTR | 45.0% |
| TCAGCTTCTTGCTCAACCAA+AGG | - | chr1_1:6657074-6657093 | None:intergenic | 45.0% | |
| ! | TCTCTGCCACCAACTTTTCA+AGG | + | chr1_1:6657502-6657521 | Msa0004200:CDS | 45.0% |
| GCGCATAATGTTGAAGCCTT+TGG | + | chr1_1:6657953-6657972 | Msa0004200:CDS | 45.0% | |
| GCAGATGCAATGTCTATTCC+TGG | + | chr1_1:6658149-6658168 | Msa0004200:CDS | 45.0% | |
| TGGACAATCCTGTAAAGACC+AGG | - | chr1_1:6658170-6658189 | None:intergenic | 45.0% | |
| TGGTCTTTACAGGATTGTCC+AGG | + | chr1_1:6658169-6658188 | Msa0004200:CDS | 45.0% | |
| ATTTGCACCTGTAAGGCCTT+AGG | - | chr1_1:6658523-6658542 | None:intergenic | 45.0% | |
| GGCCTTACAGGTGCAAATAA+TGG | + | chr1_1:6658525-6658544 | Msa0004200:CDS | 45.0% | |
| AGGGCCATGAAAAAACCAGT+TGG | + | chr1_1:6658652-6658671 | Msa0004200:intron | 45.0% | |
| GTTTGGAAAGGCTGAGAAGA+TGG | + | chr1_1:6659230-6659249 | Msa0004200:intron | 45.0% | |
| AGAAGACACAGAAAAGGCTC+CGG | + | chr1_1:6659425-6659444 | Msa0004200:CDS | 45.0% | |
| AAAAGCAAACCACCACTAGC+AGG | - | chr1_1:6659459-6659478 | None:intergenic | 45.0% | |
| GCGGCTTATATTTAAAGGCG+AGG | + | chr1_1:6659536-6659555 | Msa0004200:CDS | 45.0% | |
| AGGCGAGGAAAGAAAAACCA+AGG | + | chr1_1:6659551-6659570 | Msa0004200:CDS | 45.0% | |
| AACTTGCCGCACAAGTAAAC+TGG | - | chr1_1:6659820-6659839 | None:intergenic | 45.0% | |
| ATCAAATTCATTGCCGCGTC+CGG | + | chr1_1:6659901-6659920 | Msa0004200:intron | 45.0% | |
| !! | AAACTCTAAAACACCGGACG+CGG | - | chr1_1:6659917-6659936 | None:intergenic | 45.0% |
| TGGCAATTGTGCAGCATGTA+AGG | + | chr1_1:6659983-6660002 | Msa0004200:intron | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | - | chr1_1:6660626-6660645 | None:intergenic | 45.0% | |
| TGGATTGCGAGCAACAGTTC+AGG | + | chr1_1:6657718-6657737 | Msa0004200:CDS | 50.0% | |
| TTTGTGGCCTAAGGCCTTAC+AGG | + | chr1_1:6658513-6658532 | Msa0004200:CDS | 50.0% | |
| CCACGTGACTTCTCATTCTC+AGG | - | chr1_1:6659345-6659364 | None:intergenic | 50.0% | |
| CCTGAGAATGAGAAGTCACG+TGG | + | chr1_1:6659342-6659361 | Msa0004200:CDS | 50.0% | |
| GTCACGTGGAGAGCTTATTG+TGG | + | chr1_1:6659356-6659375 | Msa0004200:CDS | 50.0% | |
| ACCACACAAATCCGTTTGCG+CGG | + | chr1_1:6659517-6659536 | Msa0004200:CDS | 50.0% | |
| ATGCAGCAGGCCTAACTTTG+AGG | - | chr1_1:6660103-6660122 | None:intergenic | 50.0% | |
| GTGTTACCTTTGGATGCAGC+AGG | - | chr1_1:6660116-6660135 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | - | chr1_1:6660630-6660649 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | + | chr1_1:6660627-6660646 | Msa0004200:intron | 50.0% | |
| GACACAGAAAAGGCTCCGGA+AGG | + | chr1_1:6659429-6659448 | Msa0004200:CDS | 55.0% | |
| CCACTAGCAGGTGTTCCTTC+CGG | - | chr1_1:6659447-6659466 | None:intergenic | 55.0% | |
| GAAGGAACACCTGCTAGTGG+TGG | + | chr1_1:6659447-6659466 | Msa0004200:CDS | 55.0% | |
| GTTAGGCCTGCTGCATCCAA+AGG | + | chr1_1:6660107-6660126 | Msa0004200:CDS | 55.0% | |
| CCGGAAGGAACACCTGCTAG+TGG | + | chr1_1:6659444-6659463 | Msa0004200:CDS | 60.0% | |
| ! | GCCGCGCAAACGGATTTGTG+TGG | - | chr1_1:6659521-6659540 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6656446 | 6660858 | 6656446 | ID=Msa0004200;Name=Msa0004200 |
| chr1_1 | mRNA | 6656446 | 6660858 | 6656446 | ID=Msa0004200-mRNA-1;Parent=Msa0004200;Name=Msa0004200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=211|1|1|1|0.91|0.84|13|438|535 |
| chr1_1 | exon | 6656446 | 6656767 | 6656446 | ID=Msa0004200-mRNA-1:exon:2245;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6657056 | 6657154 | 6657056 | ID=Msa0004200-mRNA-1:exon:2246;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6657251 | 6657301 | 6657251 | ID=Msa0004200-mRNA-1:exon:2247;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6657400 | 6657523 | 6657400 | ID=Msa0004200-mRNA-1:exon:2248;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6657621 | 6657739 | 6657621 | ID=Msa0004200-mRNA-1:exon:2249;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6657924 | 6658025 | 6657924 | ID=Msa0004200-mRNA-1:exon:2250;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6658116 | 6658190 | 6658116 | ID=Msa0004200-mRNA-1:exon:2251;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6658481 | 6658557 | 6658481 | ID=Msa0004200-mRNA-1:exon:2252;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6658654 | 6658900 | 6658654 | ID=Msa0004200-mRNA-1:exon:2253;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6659231 | 6659572 | 6659231 | ID=Msa0004200-mRNA-1:exon:2254;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6659997 | 6660128 | 6659997 | ID=Msa0004200-mRNA-1:exon:2255;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6660210 | 6660614 | 6660210 | ID=Msa0004200-mRNA-1:exon:2256;Parent=Msa0004200-mRNA-1 |
| chr1_1 | exon | 6660697 | 6660858 | 6660697 | ID=Msa0004200-mRNA-1:exon:2257;Parent=Msa0004200-mRNA-1 |
| chr1_1 | five_prime_UTR | 6656446 | 6656656 | 6656446 | ID=Msa0004200-mRNA-1:five_prime_utr;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6656657 | 6656767 | 6656657 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6657056 | 6657154 | 6657056 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6657251 | 6657301 | 6657251 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6657400 | 6657523 | 6657400 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6657621 | 6657739 | 6657621 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6657924 | 6658025 | 6657924 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6658116 | 6658190 | 6658116 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6658481 | 6658557 | 6658481 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6658654 | 6658900 | 6658654 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6659231 | 6659572 | 6659231 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6659997 | 6660128 | 6659997 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | CDS | 6660210 | 6660338 | 6660210 | ID=Msa0004200-mRNA-1:cds;Parent=Msa0004200-mRNA-1 |
| chr1_1 | three_prime_UTR | 6660339 | 6660614 | 6660339 | ID=Msa0004200-mRNA-1:three_prime_utr;Parent=Msa0004200-mRNA-1 |
| chr1_1 | three_prime_UTR | 6660697 | 6660858 | 6660697 | ID=Msa0004200-mRNA-1:three_prime_utr;Parent=Msa0004200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
