Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147460 | XP_003589515.1 | 98.505 | 535 | 6 | 1 | 1 | 533 | 1 | 535 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147460 | sp|B6ETT4|SYT2_ARATH | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147460 | G7I7R4 | 98.505 | 535 | 6 | 1 | 1 | 533 | 1 | 535 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004200 | Msa0147460 | 0.901937 | 1.614801e-78 | -8.615850e-47 |
| Msa0147460 | Msa0336650 | 0.800078 | 1.706367e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147460 | MtrunA17_Chr1g0156811 | 98.505 | 535 | 6 | 1 | 1 | 533 | 1 | 535 | 0.0 | 1073 |
| Msa0147460 | MtrunA17_Chr1g0199571 | 52.477 | 545 | 244 | 6 | 1 | 532 | 1 | 543 | 0.0 | 560 |
| Msa0147460 | MtrunA17_Chr4g0037111 | 77.044 | 318 | 71 | 1 | 18 | 333 | 18 | 335 | 0.0 | 523 |
| Msa0147460 | MtrunA17_Chr4g0037121 | 68.878 | 196 | 57 | 2 | 340 | 532 | 1 | 195 | 6.39e-95 | 287 |
| Msa0147460 | MtrunA17_Chr4g0064531 | 31.380 | 529 | 316 | 14 | 40 | 530 | 38 | 557 | 1.43e-72 | 241 |
| Msa0147460 | MtrunA17_Chr7g0246311 | 32.945 | 343 | 217 | 7 | 59 | 393 | 58 | 395 | 8.90e-57 | 197 |
| Msa0147460 | MtrunA17_Chr3g0137471 | 28.957 | 556 | 293 | 18 | 53 | 530 | 51 | 582 | 1.30e-55 | 196 |
| Msa0147460 | MtrunA17_Chr8g0351231 | 31.707 | 410 | 249 | 13 | 1 | 393 | 1 | 396 | 1.02e-51 | 184 |
| Msa0147460 | MtrunA17_Chr4g0037181 | 55.856 | 111 | 41 | 2 | 340 | 447 | 1 | 106 | 1.90e-31 | 119 |
| Msa0147460 | MtrunA17_Chr7g0249671 | 61.250 | 80 | 29 | 2 | 451 | 529 | 2 | 80 | 1.49e-20 | 85.9 |
| Msa0147460 | MtrunA17_Chr2g0313621 | 26.871 | 294 | 183 | 12 | 67 | 334 | 72 | 359 | 8.22e-18 | 87.0 |
| Msa0147460 | MtrunA17_Chr6g0478401 | 41.573 | 89 | 47 | 3 | 253 | 341 | 13 | 96 | 3.55e-13 | 68.2 |
| Msa0147460 | MtrunA17_Chr6g0484401 | 20.345 | 521 | 333 | 23 | 69 | 529 | 97 | 595 | 8.77e-12 | 68.2 |
| Msa0147460 | MtrunA17_Chr3g0111361 | 40.449 | 89 | 48 | 3 | 253 | 341 | 1 | 84 | 3.34e-11 | 62.0 |
| Msa0147460 | MtrunA17_Chr2g0280981 | 38.824 | 85 | 47 | 3 | 257 | 341 | 4 | 83 | 9.05e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147460 | AT1G20080.2 | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Msa0147460 | AT1G20080.3 | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Msa0147460 | AT1G20080.4 | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Msa0147460 | AT1G20080.1 | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Msa0147460 | AT1G20080.5 | 71.508 | 537 | 146 | 3 | 1 | 532 | 1 | 535 | 0.0 | 819 |
| Msa0147460 | AT2G20990.1 | 69.388 | 539 | 158 | 3 | 1 | 532 | 1 | 539 | 0.0 | 785 |
| Msa0147460 | AT2G20990.3 | 64.818 | 577 | 158 | 3 | 1 | 532 | 1 | 577 | 0.0 | 771 |
| Msa0147460 | AT2G20990.2 | 66.430 | 563 | 158 | 4 | 1 | 532 | 1 | 563 | 0.0 | 771 |
| Msa0147460 | AT5G04220.2 | 51.852 | 540 | 251 | 7 | 1 | 532 | 1 | 539 | 0.0 | 549 |
| Msa0147460 | AT5G04220.3 | 53.766 | 478 | 212 | 7 | 63 | 532 | 1 | 477 | 3.10e-180 | 516 |
| Msa0147460 | AT2G21010.1 | 61.628 | 258 | 94 | 2 | 276 | 532 | 1 | 254 | 5.23e-112 | 333 |
| Msa0147460 | AT5G04220.1 | 50.479 | 313 | 148 | 6 | 226 | 532 | 6 | 317 | 1.39e-97 | 298 |
| Msa0147460 | AT1G05500.1 | 30.605 | 562 | 337 | 14 | 11 | 530 | 1 | 551 | 8.61e-78 | 255 |
| Msa0147460 | AT1G05500.2 | 32.134 | 417 | 241 | 11 | 146 | 530 | 1 | 407 | 7.44e-56 | 193 |
| Msa0147460 | AT3G61050.2 | 32.394 | 355 | 227 | 7 | 60 | 406 | 59 | 408 | 1.02e-52 | 187 |
| Msa0147460 | AT3G61050.1 | 32.394 | 355 | 227 | 7 | 60 | 406 | 59 | 408 | 1.02e-52 | 187 |
| Msa0147460 | AT2G21040.1 | 62.069 | 87 | 33 | 0 | 399 | 485 | 2 | 88 | 1.58e-34 | 131 |
| Msa0147460 | AT3G60950.1 | 26.351 | 296 | 168 | 9 | 73 | 364 | 41 | 290 | 3.25e-19 | 91.7 |
| Msa0147460 | AT3G14590.2 | 27.027 | 296 | 182 | 12 | 67 | 334 | 68 | 357 | 3.88e-16 | 82.0 |
| Msa0147460 | AT3G14590.1 | 27.027 | 296 | 182 | 12 | 67 | 334 | 23 | 312 | 4.29e-16 | 82.0 |
| Msa0147460 | AT3G14590.3 | 27.027 | 296 | 182 | 12 | 67 | 334 | 37 | 326 | 4.36e-16 | 82.0 |
| Msa0147460 | AT1G53590.1 | 26.441 | 295 | 184 | 12 | 67 | 334 | 68 | 356 | 5.15e-15 | 78.6 |
| Msa0147460 | AT1G48590.4 | 42.105 | 95 | 49 | 4 | 247 | 341 | 1 | 89 | 2.76e-14 | 71.2 |
| Msa0147460 | AT1G48590.1 | 42.105 | 95 | 49 | 4 | 247 | 341 | 1 | 89 | 2.76e-14 | 71.2 |
| Msa0147460 | AT1G48590.2 | 42.105 | 95 | 49 | 4 | 247 | 341 | 32 | 120 | 3.72e-14 | 72.0 |
| Msa0147460 | AT2G01540.1 | 40.909 | 88 | 47 | 3 | 254 | 341 | 3 | 85 | 2.01e-12 | 66.2 |
| Msa0147460 | AT3G14590.5 | 26.199 | 271 | 168 | 11 | 92 | 334 | 5 | 271 | 6.23e-12 | 68.6 |
| Msa0147460 | AT3G19830.1 | 21.023 | 352 | 240 | 13 | 71 | 393 | 204 | 546 | 1.02e-11 | 68.2 |
| Msa0147460 | AT3G19830.3 | 21.023 | 352 | 240 | 13 | 71 | 393 | 204 | 546 | 1.02e-11 | 68.2 |
| Msa0147460 | AT3G19830.2 | 21.023 | 352 | 240 | 13 | 71 | 393 | 204 | 546 | 1.02e-11 | 68.2 |
| Msa0147460 | AT3G19830.4 | 21.023 | 352 | 240 | 13 | 71 | 393 | 204 | 546 | 1.02e-11 | 68.2 |
| Msa0147460 | AT3G17980.1 | 39.130 | 92 | 51 | 3 | 250 | 341 | 10 | 96 | 2.29e-11 | 63.2 |
| Msa0147460 | AT1G73580.1 | 41.667 | 96 | 51 | 3 | 253 | 348 | 4 | 94 | 2.44e-11 | 62.8 |
Find 120 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCAAACATAAAATCTTAT+TGG | 0.176557 | 1_4:+7399937 | None:intergenic |
| TTTATCCATAAGGGTATTTC+TGG | 0.176766 | 1_4:+7403561 | None:intergenic |
| TACTGACCAATCATTCATTA+TGG | 0.189172 | 1_4:+7400432 | None:intergenic |
| GATAACTCATCATCCTTAAA+AGG | 0.195494 | 1_4:+7401372 | None:intergenic |
| TTGCAGCCACATGTTGATTT+TGG | 0.196155 | 1_4:-7402641 | Msa0147460:intron |
| CTTCAACATCTTCAGCTTCA+TGG | 0.205719 | 1_4:+7401277 | None:intergenic |
| TGTCTATTCCTGGTCTTTAC+AGG | 0.225371 | 1_4:-7402592 | Msa0147460:CDS |
| TTTGCGCGGCTTATATTTAA+AGG | 0.251485 | 1_4:-7401234 | Msa0147460:CDS |
| GGAATTTGTTCAGCAATAAT+AGG | 0.273016 | 1_4:+7403253 | None:intergenic |
| TTAAACTCTTCATTCCATTC+TGG | 0.286995 | 1_4:+7401948 | None:intergenic |
| TTTGTGGCCTAAGGCCTTAC+AGG | 0.290174 | 1_4:-7402252 | Msa0147460:CDS |
| AGTACTACTCTGGTTTAGTT+TGG | 0.301538 | 1_4:-7404043 | Msa0147460:five_prime_UTR |
| GCTTAGAAAGAAAGATATAA+TGG | 0.304229 | 1_4:-7402057 | Msa0147460:CDS |
| TGATGAAAAGGAATTGATTA+TGG | 0.312221 | 1_4:-7403046 | Msa0147460:CDS |
| TTTCTTGTTTGCAGCTTGAT+TGG | 0.313508 | 1_4:-7403452 | Msa0147460:intron |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 1_4:+7402997 | None:intergenic |
| GGATCCTACATTTACTCCTT+TGG | 0.316311 | 1_4:-7403619 | Msa0147460:CDS |
| TGCTTCCAGAAATACCCTTA+TGG | 0.317531 | 1_4:-7403566 | Msa0147460:CDS |
| CCACTAGCAGGTGTTCCTTC+TGG | 0.318290 | 1_4:+7401321 | None:intergenic |
| GTGCATACCTTGTTCAAATA+AGG | 0.318440 | 1_4:+7403402 | None:intergenic |
| CATGAGAGACACGTAAATAT+TGG | 0.325285 | 1_4:+7402754 | None:intergenic |
| TAATGCTTAATGTTTATGAT+TGG | 0.327754 | 1_4:-7401893 | Msa0147460:CDS |
| ATGATTGGTCAGTAGTAAAT+AGG | 0.332208 | 1_4:-7400423 | Msa0147460:three_prime_UTR |
| AATTTAAGAGTAAGTAGTTT+TGG | 0.333174 | 1_4:+7401471 | None:intergenic |
| GGCCTTACAGGTGCAAATAA+TGG | 0.335538 | 1_4:-7402240 | Msa0147460:CDS |
| GCGCATAATGTTGAAGCCTT+TGG | 0.341358 | 1_4:-7402798 | Msa0147460:CDS |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.351491 | 1_4:-7402988 | Msa0147460:CDS |
| TTCTCATTCTCAGGATCATT+AGG | 0.353471 | 1_4:+7401432 | None:intergenic |
| ATATGAGACAGTGTACTATT+TGG | 0.354241 | 1_4:-7400024 | Msa0147460:three_prime_UTR |
| TTATGGAATTATCAATGAAA+TGG | 0.362011 | 1_4:-7403029 | Msa0147460:CDS |
| ACTGACCAATCATTCATTAT+GGG | 0.371685 | 1_4:+7400433 | None:intergenic |
| TTGAGTTTAAGTTTCACATA+AGG | 0.380151 | 1_4:+7402023 | None:intergenic |
| AACATAAAGTCTCTCATTGA+TGG | 0.380639 | 1_4:+7400704 | None:intergenic |
| TGAGTTTAAGTTTCACATAA+GGG | 0.381669 | 1_4:+7402024 | None:intergenic |
| TAACATACACGGTCATAATC+TGG | 0.388897 | 1_4:+7403534 | None:intergenic |
| TGGCAATTGTGCAGCATGTA+AGG | 0.397069 | 1_4:-7400782 | Msa0147460:intron |
| ATGCATGTAACATGGAAGTT+TGG | 0.400839 | 1_4:-7400376 | Msa0147460:three_prime_UTR |
| TGAAATGTTTCACCCCATCT+TGG | 0.402322 | 1_4:+7400747 | None:intergenic |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 1_4:-7402288 | Msa0147460:intron |
| TGCATAATATATGTAAGATC+CGG | 0.404476 | 1_4:+7400171 | None:intergenic |
| ACTTCACTTGGATTGTTGAT+TGG | 0.408025 | 1_4:-7403894 | Msa0147460:CDS |
| GCAGATGCAATGTCTATTCC+TGG | 0.408163 | 1_4:-7402602 | Msa0147460:CDS |
| AATGCTTAATGTTTATGATT+GGG | 0.413882 | 1_4:-7401892 | Msa0147460:CDS |
| ATCCATTATTTGCACCTGTA+AGG | 0.414927 | 1_4:+7402238 | None:intergenic |
| CTTAGAAAGAAAGATATAAT+GGG | 0.420642 | 1_4:-7402056 | Msa0147460:CDS |
| CAACTTCAATATCAATGTCT+AGG | 0.423562 | 1_4:+7403967 | None:intergenic |
| ATGCAGCAGGCCTAACTTTG+AGG | 0.430649 | 1_4:+7400665 | None:intergenic |
| TAATGTTTATGATTGGGAAC+AGG | 0.431633 | 1_4:-7401886 | Msa0147460:intron |
| GTTTGGAAAGGCTGAGAAGA+TGG | 0.433941 | 1_4:-7401535 | Msa0147460:CDS |
| CCACGTGACTTCTCATTCTC+AGG | 0.435478 | 1_4:+7401423 | None:intergenic |
| TGAATTTGAAGAACTTAACT+TGG | 0.437517 | 1_4:-7403209 | Msa0147460:CDS |
| TGGTTTGCGAGCAACAGTTC+AGG | 0.437684 | 1_4:-7402968 | Msa0147460:intron |
| GTGTTACCTTTGGATGCAGC+AGG | 0.438661 | 1_4:+7400652 | None:intergenic |
| GAATTATCAATGAAATGGGC+TGG | 0.454207 | 1_4:-7403024 | Msa0147460:CDS |
| TTCACATGAAGAATTCCAAC+TGG | 0.456262 | 1_4:+7402098 | None:intergenic |
| AGTGTATAGCACTGATGAAA+AGG | 0.456613 | 1_4:-7403058 | Msa0147460:CDS |
| AGTTTCTTTCATATCAAAAG+TGG | 0.460270 | 1_4:+7404013 | None:intergenic |
| TTTGGTGTAAGCTCTTTCAA+TGG | 0.460667 | 1_4:+7401498 | None:intergenic |
| TTAAATATAAGCCGCGCAAA+CGG | 0.466177 | 1_4:+7401237 | None:intergenic |
| CTATATATACCTTGAAAAGT+TGG | 0.467929 | 1_4:+7403175 | None:intergenic |
| CATGAAGCTGAAGATGTTGA+AGG | 0.474251 | 1_4:-7401276 | Msa0147460:CDS |
| TTTGGAATTGGAACTTCACT+TGG | 0.478660 | 1_4:-7403906 | Msa0147460:CDS |
| GGTGTCGGGGATTCGAACCC+CGG | 0.479584 | 1_4:-7400190 | Msa0147460:three_prime_UTR |
| TTACGTGTCTCTCATGGAAA+AGG | 0.487256 | 1_4:-7402747 | Msa0147460:intron |
| AAACTGAATAAATCAATGCT+TGG | 0.488339 | 1_4:-7400061 | Msa0147460:three_prime_UTR |
| ATAAATTTGTTGAGTGTATG+TGG | 0.489433 | 1_4:-7403425 | Msa0147460:CDS |
| GCATAATATATGTAAGATCC+GGG | 0.490827 | 1_4:+7400172 | None:intergenic |
| TATGGAATTATCAATGAAAT+GGG | 0.501349 | 1_4:-7403028 | Msa0147460:CDS |
| TCAGGAAACTCTTGGATATG+TGG | 0.502591 | 1_4:-7400559 | Msa0147460:intron |
| AGAACCCCATAATGAATGAT+TGG | 0.503884 | 1_4:-7400438 | Msa0147460:exon |
| AACTTCAATATCAATGTCTA+GGG | 0.503960 | 1_4:+7403968 | None:intergenic |
| ACATAAAGTCTCTCATTGAT+GGG | 0.508044 | 1_4:+7400705 | None:intergenic |
| ACTTAGTTAGTACTAGTAGT+AGG | 0.508370 | 1_4:-7403993 | Msa0147460:five_prime_UTR |
| ATAAGTGCATCCTCAAAGTT+AGG | 0.515045 | 1_4:-7400675 | Msa0147460:CDS |
| ATTTGCACCTGTAAGGCCTT+AGG | 0.516595 | 1_4:+7402245 | None:intergenic |
| CAATATTTACGTGTCTCTCA+TGG | 0.518490 | 1_4:-7402753 | Msa0147460:CDS |
| AATTATCAATGAAATGGGCT+GGG | 0.534000 | 1_4:-7403023 | Msa0147460:CDS |
| GAATTCAGAAGACACGGAAA+AGG | 0.534799 | 1_4:-7401346 | Msa0147460:CDS |
| AACATTTCAATTTACGCTAG+AGG | 0.535589 | 1_4:-7400733 | Msa0147460:CDS |
| AACAATGATACATACTGTGA+TGG | 0.538427 | 1_4:+7402215 | None:intergenic |
| AGATTCAAATTGAGCTTCAG+TGG | 0.538926 | 1_4:-7400461 | Msa0147460:CDS |
| CTTTCAATCAATAGATGTCA+AGG | 0.552952 | 1_4:-7403853 | Msa0147460:intron |
| ACAAGAACTTGAATCCAGAA+TGG | 0.555590 | 1_4:-7401962 | Msa0147460:CDS |
| TTTGGAAAGGCTGAGAAGAT+GGG | 0.557070 | 1_4:-7401534 | Msa0147460:CDS |
| TTGGCGAAACAAGGAAAACT+AGG | 0.559504 | 1_4:+7402773 | None:intergenic |
| TTAGCTTCTTGCTCAACCAA+AGG | 0.569279 | 1_4:+7403603 | None:intergenic |
| AAAAGCAAACCACCACTAGC+AGG | 0.570645 | 1_4:+7401309 | None:intergenic |
| TCAACCAAAGGAGTAAATGT+AGG | 0.571099 | 1_4:+7403615 | None:intergenic |
| TATATACCTTGAAAAGTTGG+TGG | 0.574416 | 1_4:+7403178 | None:intergenic |
| GGTGGTTAACTAGTTTGGAA+AGG | 0.576754 | 1_4:-7401547 | Msa0147460:intron |
| GAATTTGAAGAACTTAACTT+GGG | 0.579840 | 1_4:-7403208 | Msa0147460:CDS |
| CAAGGAAAACTAGGAACCAA+AGG | 0.582613 | 1_4:+7402782 | None:intergenic |
| CTGACCAATCATTCATTATG+GGG | 0.585607 | 1_4:+7400434 | None:intergenic |
| GTTAGGCCTGCTGCATCCAA+AGG | 0.591098 | 1_4:-7400658 | Msa0147460:intron |
| CCACACAAGAAGTACTACTC+TGG | 0.593938 | 1_4:-7404053 | Msa0147460:five_prime_UTR |
| CCAGAGTAGTACTTCTTGTG+TGG | 0.597948 | 1_4:+7404053 | None:intergenic |
| GTCACGTGGAGAGCTTATTG+TGG | 0.600730 | 1_4:-7401409 | Msa0147460:CDS |
| ATCTAAGAATTCAGAAGACA+CGG | 0.602831 | 1_4:-7401352 | Msa0147460:CDS |
| TTTAATCCAAAATCAACATG+TGG | 0.608108 | 1_4:+7402635 | None:intergenic |
| TGCATATTACAAACTTACAA+TGG | 0.609671 | 1_4:+7400394 | None:intergenic |
| GACACGGAAAAGGCTCCAGA+AGG | 0.610551 | 1_4:-7401336 | Msa0147460:CDS |
| ACGTAAATATTGGCGAAACA+AGG | 0.611735 | 1_4:+7402764 | None:intergenic |
| ACCACACAAATCCGTTTGCG+CGG | 0.615343 | 1_4:-7401248 | Msa0147460:CDS |
| CATAAAGTCTCTCATTGATG+GGG | 0.616421 | 1_4:+7400706 | None:intergenic |
| ATAAAGTCTCTCATTGATGG+GGG | 0.628586 | 1_4:+7400707 | None:intergenic |
| CCAGAAGGAACACCTGCTAG+TGG | 0.628666 | 1_4:-7401321 | Msa0147460:CDS |
| TTTGTAATATGCATGTAACA+TGG | 0.629618 | 1_4:-7400384 | Msa0147460:three_prime_UTR |
| GCGGCTTATATTTAAAGGCG+AGG | 0.630495 | 1_4:-7401229 | Msa0147460:CDS |
| AGAAAGAAAGATATAATGGG+AGG | 0.645260 | 1_4:-7402053 | Msa0147460:CDS |
| TATGTGGCCTTATTTGAACA+AGG | 0.651291 | 1_4:-7403409 | Msa0147460:intron |
| CCTGAGAATGAGAAGTCACG+TGG | 0.651349 | 1_4:-7401423 | Msa0147460:CDS |
| GAAGGAACACCTGCTAGTGG+TGG | 0.652449 | 1_4:-7401318 | Msa0147460:CDS |
| TTGGTCAGTAGTAAATAGGA+TGG | 0.653068 | 1_4:-7400419 | Msa0147460:three_prime_UTR |
| ATGGAATGAAGAGTTTAATG+TGG | 0.658297 | 1_4:-7401943 | Msa0147460:CDS |
| TGGACAATCCTGTAAAGACC+AGG | 0.661769 | 1_4:+7402584 | None:intergenic |
| GCCGCGCAAACGGATTTGTG+TGG | 0.677878 | 1_4:+7401247 | None:intergenic |
| CATAATATATGTAAGATCCG+GGG | 0.679733 | 1_4:+7400173 | None:intergenic |
| AAAGGCTTCAACATTATGCG+CGG | 0.685990 | 1_4:+7402800 | None:intergenic |
| TAAAGTCTCTCATTGATGGG+GGG | 0.690358 | 1_4:+7400708 | None:intergenic |
| AAATTAGAAAAGAAAAGACA+AGG | 0.696021 | 1_4:+7404104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTCAAAATTTTAT+TGG | - | chr1_4:7400710-7400729 | Msa0147460:CDS | 10.0% |
| !! | TATAACATAACATTATAATT+AGG | - | chr1_4:7401907-7401926 | Msa0147460:CDS | 10.0% |
| !! | AAGAATAATAATAACATACA+CGG | + | chr1_4:7400562-7400581 | None:intergenic | 15.0% |
| !! | TCAAATATAAACAAAAAAAG+CGG | - | chr1_4:7401150-7401169 | Msa0147460:intron | 15.0% |
| !! | TTATGTTATAAACTCATAAA+GGG | + | chr1_4:7401897-7401916 | None:intergenic | 15.0% |
| !!! | TCAAAATTTTTAAAAAGTTG+AGG | - | chr1_4:7402360-7402379 | Msa0147460:intron | 15.0% |
| !!! | CAAAATTTTTAAAAAGTTGA+GGG | - | chr1_4:7402361-7402380 | Msa0147460:intron | 15.0% |
| !!! | AAAATTTTTAAAAAGTTGAG+GGG | - | chr1_4:7402362-7402381 | Msa0147460:intron | 15.0% |
| !! | TAATATATAGAAGAATTAGA+TGG | + | chr1_4:7402942-7402961 | None:intergenic | 15.0% |
| !! | TAAAGTAAGTATAGATTAAA+AGG | + | chr1_4:7403193-7403212 | None:intergenic | 15.0% |
| !!! | TTCCAAATCATAATTTTTTT+TGG | - | chr1_4:7403871-7403890 | Msa0147460:CDS | 15.0% |
| !! | AAATTAGAAAAGAAAAGACA+AGG | + | chr1_4:7399981-7400000 | None:intergenic | 20.0% |
| !!! | AACTATACTACTTTTTTAGA+GGG | + | chr1_4:7400597-7400616 | None:intergenic | 20.0% |
| !!! | AAACTATACTACTTTTTTAG+AGG | + | chr1_4:7400598-7400617 | None:intergenic | 20.0% |
| !! | GTTGATCCAAATATATAATA+TGG | - | chr1_4:7400988-7401007 | Msa0147460:intron | 20.0% |
| !! | TTATGGAATTATCAATGAAA+TGG | - | chr1_4:7401053-7401072 | Msa0147460:intron | 20.0% |
| !! | TATGGAATTATCAATGAAAT+GGG | - | chr1_4:7401054-7401073 | Msa0147460:intron | 20.0% |
| !!! | TTTTTGTTTATATTTGAGTC+CGG | + | chr1_4:7401147-7401166 | None:intergenic | 20.0% |
| !!! | TTCATTTTCTGTTGTTAAAA+AGG | + | chr1_4:7401204-7401223 | None:intergenic | 20.0% |
| !! | CAAGAATAATATTAATGACA+TGG | + | chr1_4:7401550-7401569 | None:intergenic | 20.0% |
| !!! | TTTAGCGATATTTTTCAAAT+CGG | - | chr1_4:7401666-7401685 | Msa0147460:intron | 20.0% |
| !! | GTTATGTTATAAACTCATAA+AGG | + | chr1_4:7401898-7401917 | None:intergenic | 20.0% |
| !! | TAATTAGGTGTTAATTAGAT+TGG | - | chr1_4:7401922-7401941 | Msa0147460:CDS | 20.0% |
| !! | CTTAGAAAGAAAGATATAAT+GGG | - | chr1_4:7402026-7402045 | Msa0147460:CDS | 20.0% |
| !! | TAATGCTTAATGTTTATGAT+TGG | - | chr1_4:7402189-7402208 | Msa0147460:intron | 20.0% |
| !! | AATGCTTAATGTTTATGATT+GGG | - | chr1_4:7402190-7402209 | Msa0147460:intron | 20.0% |
| !!! | AAAACATTTAAAATCTCTTC+TGG | + | chr1_4:7402331-7402350 | None:intergenic | 20.0% |
| !!! | GAAGAGATTTTAAATGTTTT+TGG | - | chr1_4:7402331-7402350 | Msa0147460:intron | 20.0% |
| !!! | AATTTAAGAGTAAGTAGTTT+TGG | + | chr1_4:7402614-7402633 | None:intergenic | 20.0% |
| !! | TTAATCTATACTTACTTTAG+AGG | - | chr1_4:7403194-7403213 | Msa0147460:CDS | 20.0% |
| !!! | ATACATAGTTTTATGTCTTA+TGG | - | chr1_4:7403466-7403485 | Msa0147460:intron | 20.0% |
| !!! | AATTTGAATCTTTCCATTTT+TGG | + | chr1_4:7403612-7403631 | None:intergenic | 20.0% |
| !! | TACTCATGAAAAAAGATAAA+AGG | - | chr1_4:7403791-7403810 | Msa0147460:intron | 20.0% |
| !! | CACCAAAAAAAATTATGATT+TGG | + | chr1_4:7403876-7403895 | None:intergenic | 20.0% |
| !!! | ATCATAATTTTTTTTGGTGT+CGG | - | chr1_4:7403877-7403896 | Msa0147460:CDS | 20.0% |
| !! | TAATTTAATATGAAAACTCC+AGG | - | chr1_4:7403978-7403997 | Msa0147460:five_prime_UTR | 20.0% |
| !! | AATTTAATATGAAAACTCCA+GGG | - | chr1_4:7403979-7403998 | Msa0147460:five_prime_UTR | 20.0% |
| ! | AGTTTCTTTCATATCAAAAG+TGG | + | chr1_4:7400072-7400091 | None:intergenic | 25.0% |
| ! | AACTTCAATATCAATGTCTA+GGG | + | chr1_4:7400117-7400136 | None:intergenic | 25.0% |
| !!! | AGTACTATAGCTAGTTTTTT+AGG | - | chr1_4:7400152-7400171 | Msa0147460:intron | 25.0% |
| !!! | ATAGCTAGTTTTTTAGGATT+TGG | - | chr1_4:7400158-7400177 | Msa0147460:intron | 25.0% |
| !!! | AGTTTTTTAGGATTTGGAAT+TGG | - | chr1_4:7400164-7400183 | Msa0147460:intron | 25.0% |
| ! | TAAAGTTGTGATCTGTTAAA+AGG | - | chr1_4:7400314-7400333 | Msa0147460:three_prime_UTR | 25.0% |
| !!! | TCTGGATTTTTTATCCATAA+GGG | + | chr1_4:7400533-7400552 | None:intergenic | 25.0% |
| !!! | ATCTGGATTTTTTATCCATA+AGG | + | chr1_4:7400534-7400553 | None:intergenic | 25.0% |
| !!! | ATAAATTTGTTGAGTGTATG+TGG | - | chr1_4:7400657-7400676 | Msa0147460:intron | 25.0% |
| !! | ACTGAATCAATTTTGTACTT+TGG | + | chr1_4:7400853-7400872 | None:intergenic | 25.0% |
| ! | TGAATTTGAAGAACTTAACT+TGG | - | chr1_4:7400873-7400892 | Msa0147460:intron | 25.0% |
| ! | GAATTTGAAGAACTTAACTT+GGG | - | chr1_4:7400874-7400893 | Msa0147460:intron | 25.0% |
| ! | CTATATATACCTTGAAAAGT+TGG | + | chr1_4:7400910-7400929 | None:intergenic | 25.0% |
| ! | CTGCAACCATATTATATATT+TGG | + | chr1_4:7400997-7401016 | None:intergenic | 25.0% |
| ! | CAAATATATAATATGGTTGC+AGG | - | chr1_4:7400995-7401014 | Msa0147460:intron | 25.0% |
| ! | TGATGAAAAGGAATTGATTA+TGG | - | chr1_4:7401036-7401055 | Msa0147460:intron | 25.0% |
| ! | TTAACTGCAACTATAATGTT+AGG | + | chr1_4:7401088-7401107 | None:intergenic | 25.0% |
| ! | AAAAGTCTTTAAATGATTGC+AGG | - | chr1_4:7401233-7401252 | Msa0147460:CDS | 25.0% |
| ! | TTTAATCCAAAATCAACATG+TGG | + | chr1_4:7401450-7401469 | None:intergenic | 25.0% |
| !! | GATTTTGGATTAAAACTACT+TGG | - | chr1_4:7401456-7401475 | Msa0147460:CDS | 25.0% |
| ! | ATAGACCAAAATTGACAAAT+TGG | - | chr1_4:7401620-7401639 | Msa0147460:intron | 25.0% |
| ! | TCAGGAAATTATAAAAGATC+AGG | - | chr1_4:7401794-7401813 | Msa0147460:intron | 25.0% |
| !!! | TTAGATTGGCTAATTTTACT+TGG | - | chr1_4:7401936-7401955 | Msa0147460:CDS | 25.0% |
| !!! | TTTTACTTGGTTAATTTGTC+AGG | - | chr1_4:7401949-7401968 | Msa0147460:CDS | 25.0% |
| !!! | TTTACTTGGTTAATTTGTCA+GGG | - | chr1_4:7401950-7401969 | Msa0147460:CDS | 25.0% |
| ! | GCTTAGAAAGAAAGATATAA+TGG | - | chr1_4:7402025-7402044 | Msa0147460:CDS | 25.0% |
| !! | TGAGTTTAAGTTTCACATAA+GGG | + | chr1_4:7402061-7402080 | None:intergenic | 25.0% |
| !! | TTGAGTTTAAGTTTCACATA+AGG | + | chr1_4:7402062-7402081 | None:intergenic | 25.0% |
| ! | ATGCAAATTTAGACTAAAGT+TGG | - | chr1_4:7402235-7402254 | Msa0147460:CDS | 25.0% |
| !!! | GTGAATGTTTTGGTTAAAAA+TGG | - | chr1_4:7402303-7402322 | Msa0147460:intron | 25.0% |
| !! | AAGTTTTCAAAATTGCAAAC+TGG | + | chr1_4:7402388-7402407 | None:intergenic | 25.0% |
| !! | GAAATTTAAAATTTGCAGAC+TGG | + | chr1_4:7402418-7402437 | None:intergenic | 25.0% |
| ! | GCAATGAAATATAAATTGCT+TGG | + | chr1_4:7402467-7402486 | None:intergenic | 25.0% |
| ! | CATGCTTGAAAATATGTTAT+AGG | + | chr1_4:7402500-7402519 | None:intergenic | 25.0% |
| !! | AGTTATGTACAAACCTTTTA+AGG | - | chr1_4:7402697-7402716 | Msa0147460:intron | 25.0% |
| ! | GATCTGATAAAATAATACCT+TGG | + | chr1_4:7402888-7402907 | None:intergenic | 25.0% |
| ! | GAAAGTCAACAAATCATAAT+CGG | + | chr1_4:7402969-7402988 | None:intergenic | 25.0% |
| !! | TCTAAAATATGTAACTGCTT+TGG | - | chr1_4:7403082-7403101 | Msa0147460:intron | 25.0% |
| ! | AAAAGGAAGAAATCAATAGT+TGG | + | chr1_4:7403176-7403195 | None:intergenic | 25.0% |
| ! | AATGGTTAAATCTCATTGAA+AGG | + | chr1_4:7403274-7403293 | None:intergenic | 25.0% |
| !!! | GAGATTTAACCATTGTTTTA+TGG | - | chr1_4:7403280-7403299 | Msa0147460:CDS | 25.0% |
| !!! | TTAATACCTTGTTTTGAATC+AGG | - | chr1_4:7403505-7403524 | Msa0147460:intron | 25.0% |
| ! | TGCATATTACAAACTTACAA+TGG | + | chr1_4:7403691-7403710 | None:intergenic | 25.0% |
| ! | TTTGTAATATGCATGTAACA+TGG | - | chr1_4:7403698-7403717 | Msa0147460:intron | 25.0% |
| !!! | TTTTTTGTTGTTGGAAAATG+TGG | - | chr1_4:7403736-7403755 | Msa0147460:intron | 25.0% |
| !!! | TCATAATTTTTTTTGGTGTC+GGG | - | chr1_4:7403878-7403897 | Msa0147460:CDS | 25.0% |
| ! | TGCATAATATATGTAAGATC+CGG | + | chr1_4:7403914-7403933 | None:intergenic | 25.0% |
| ! | AAACTGAATAAATCAATGCT+TGG | - | chr1_4:7404021-7404040 | Msa0147460:five_prime_UTR | 25.0% |
| ! | TCGCAAACATAAAATCTTAT+TGG | + | chr1_4:7404148-7404167 | None:intergenic | 25.0% |
| ACTTAGTTAGTACTAGTAGT+AGG | - | chr1_4:7400089-7400108 | Msa0147460:intron | 30.0% | |
| CAACTTCAATATCAATGTCT+AGG | + | chr1_4:7400118-7400137 | None:intergenic | 30.0% | |
| CTTTCAATCAATAGATGTCA+AGG | - | chr1_4:7400229-7400248 | Msa0147460:three_prime_UTR | 30.0% | |
| TGCATGTTTGATATGATTTC+AGG | - | chr1_4:7400442-7400461 | Msa0147460:exon | 30.0% | |
| !! | TTTATCCATAAGGGTATTTC+TGG | + | chr1_4:7400524-7400543 | None:intergenic | 30.0% |
| ! | GGTTAGTAGTACAACTATTT+TGG | - | chr1_4:7400752-7400771 | Msa0147460:CDS | 30.0% |
| ! | GTTGAATGTTGTGTTGTTAT+AGG | - | chr1_4:7400774-7400793 | Msa0147460:intron | 30.0% |
| ! | GGAATTTGTTCAGCAATAAT+AGG | + | chr1_4:7400832-7400851 | None:intergenic | 30.0% |
| TATATACCTTGAAAAGTTGG+TGG | + | chr1_4:7400907-7400926 | None:intergenic | 30.0% | |
| ! | AATTATCAATGAAATGGGCT+GGG | - | chr1_4:7401059-7401078 | Msa0147460:intron | 30.0% |
| ! | ATAGTTGCAGTTAAAGCATT+TGG | - | chr1_4:7401094-7401113 | Msa0147460:intron | 30.0% |
| !! | TTAAAAAGGTGCATCGATTA+CGG | + | chr1_4:7401190-7401209 | None:intergenic | 30.0% |
| CATTTGTTCATCACAATGTT+AGG | + | chr1_4:7401386-7401405 | None:intergenic | 30.0% | |
| ATAGTACCTGATTTAGTGAT+CGG | - | chr1_4:7401594-7401613 | Msa0147460:intron | 30.0% | |
| TATAAACCGATCACTAAATC+AGG | + | chr1_4:7401603-7401622 | None:intergenic | 30.0% | |
| ! | AGTGACCAATTTGTCAATTT+TGG | + | chr1_4:7401628-7401647 | None:intergenic | 30.0% |
| AGGTTGCAAAAATGTATTTG+TGG | - | chr1_4:7401814-7401833 | Msa0147460:intron | 30.0% | |
| AAAAATGTATTTGTGGCCTA+AGG | - | chr1_4:7401821-7401840 | Msa0147460:intron | 30.0% | |
| AACAATGATACATACTGTGA+TGG | + | chr1_4:7401870-7401889 | None:intergenic | 30.0% | |
| !!! | AATTCCAACTGGTTTTTTCA+TGG | + | chr1_4:7401976-7401995 | None:intergenic | 30.0% |
| ! | AGAAAGAAAGATATAATGGG+AGG | - | chr1_4:7402029-7402048 | Msa0147460:CDS | 30.0% |
| TTAAACTCTTCATTCCATTC+TGG | + | chr1_4:7402137-7402156 | None:intergenic | 30.0% | |
| ATGGAATGAAGAGTTTAATG+TGG | - | chr1_4:7402139-7402158 | Msa0147460:intron | 30.0% | |
| !!! | AGCATTAAGTTTTGAGATTC+TGG | + | chr1_4:7402176-7402195 | None:intergenic | 30.0% |
| TAATGTTTATGATTGGGAAC+AGG | - | chr1_4:7402196-7402215 | Msa0147460:intron | 30.0% | |
| TTGCTTGGTTAACATTCTAA+GGG | + | chr1_4:7402452-7402471 | None:intergenic | 30.0% | |
| ATTGCTTGGTTAACATTCTA+AGG | + | chr1_4:7402453-7402472 | None:intergenic | 30.0% | |
| ! | AGCATGTTACTTATTTCCTA+TGG | - | chr1_4:7402514-7402533 | Msa0147460:intron | 30.0% |
| ! | ATGTTACTTATTTCCTATGG+TGG | - | chr1_4:7402517-7402536 | Msa0147460:intron | 30.0% |
| !!! | GTAAGTAGTTTTGGTTCATT+TGG | + | chr1_4:7402605-7402624 | None:intergenic | 30.0% |
| GATAACTCATCATCCTTAAA+AGG | + | chr1_4:7402713-7402732 | None:intergenic | 30.0% | |
| ATCTAAGAATTCAGAAGACA+CGG | - | chr1_4:7402730-7402749 | Msa0147460:intron | 30.0% | |
| ACTTTCGATTTATTGCTATC+AGG | - | chr1_4:7402983-7403002 | Msa0147460:CDS | 30.0% | |
| ACTAAGAAATAGATGACAAG+TGG | + | chr1_4:7403014-7403033 | None:intergenic | 30.0% | |
| !! | TCAAACAAACTCTAAAACAC+CGG | + | chr1_4:7403240-7403259 | None:intergenic | 30.0% |
| GAAAAATAGAGATCCAAGAT+GGG | - | chr1_4:7403322-7403341 | Msa0147460:intron | 30.0% | |
| AAAAATAGAGATCCAAGATG+GGG | - | chr1_4:7403323-7403342 | Msa0147460:intron | 30.0% | |
| AACATTTCAATTTACGCTAG+AGG | - | chr1_4:7403349-7403368 | Msa0147460:intron | 30.0% | |
| ACATAAAGTCTCTCATTGAT+GGG | + | chr1_4:7403380-7403399 | None:intergenic | 30.0% | |
| AACATAAAGTCTCTCATTGA+TGG | + | chr1_4:7403381-7403400 | None:intergenic | 30.0% | |
| TTGATCTTTAGTGTTACCTT+TGG | + | chr1_4:7403443-7403462 | None:intergenic | 30.0% | |
| !! | CATCTTATTGACTCCAAAAA+TGG | - | chr1_4:7403596-7403615 | Msa0147460:CDS | 30.0% |
| ACTGACCAATCATTCATTAT+GGG | + | chr1_4:7403652-7403671 | None:intergenic | 30.0% | |
| TACTGACCAATCATTCATTA+TGG | + | chr1_4:7403653-7403672 | None:intergenic | 30.0% | |
| ! | ATGATTGGTCAGTAGTAAAT+AGG | - | chr1_4:7403659-7403678 | Msa0147460:intron | 30.0% |
| !!! | GGAGCTTTTTTTTTTGTTGT+TGG | - | chr1_4:7403727-7403746 | Msa0147460:intron | 30.0% |
| !!! | CATAATTTTTTTTGGTGTCG+GGG | - | chr1_4:7403879-7403898 | Msa0147460:CDS | 30.0% |
| CATAATATATGTAAGATCCG+GGG | + | chr1_4:7403912-7403931 | None:intergenic | 30.0% | |
| GCATAATATATGTAAGATCC+GGG | + | chr1_4:7403913-7403932 | None:intergenic | 30.0% | |
| ATATGAGACAGTGTACTATT+TGG | - | chr1_4:7404058-7404077 | Msa0147460:five_prime_UTR | 30.0% | |
| ! | AGTACTACTCTGGTTTAGTT+TGG | - | chr1_4:7400039-7400058 | Msa0147460:three_prime_UTR | 35.0% |
| ! | TTTGGAATTGGAACTTCACT+TGG | - | chr1_4:7400176-7400195 | Msa0147460:three_prime_UTR | 35.0% |
| ACTTCACTTGGATTGTTGAT+TGG | - | chr1_4:7400188-7400207 | Msa0147460:three_prime_UTR | 35.0% | |
| TCAACCAAAGGAGTAAATGT+AGG | + | chr1_4:7400470-7400489 | None:intergenic | 35.0% | |
| TAACATACACGGTCATAATC+TGG | + | chr1_4:7400551-7400570 | None:intergenic | 35.0% | |
| ! | TTTCTTGTTTGCAGCTTGAT+TGG | - | chr1_4:7400630-7400649 | Msa0147460:intron | 35.0% |
| !! | TATGTGGCCTTATTTGAACA+AGG | - | chr1_4:7400673-7400692 | Msa0147460:CDS | 35.0% |
| GTGCATACCTTGTTCAAATA+AGG | + | chr1_4:7400683-7400702 | None:intergenic | 35.0% | |
| ! | GGCATCTATGAGATTTTGTA+TGG | - | chr1_4:7400731-7400750 | Msa0147460:CDS | 35.0% |
| !! | AGTGTATAGCACTGATGAAA+AGG | - | chr1_4:7401024-7401043 | Msa0147460:intron | 35.0% |
| GAATTATCAATGAAATGGGC+TGG | - | chr1_4:7401058-7401077 | Msa0147460:intron | 35.0% | |
| AAAAAAGCGGCCATATTTAG+CGG | - | chr1_4:7401163-7401182 | Msa0147460:intron | 35.0% | |
| ACGTAAATATTGGCGAAACA+AGG | + | chr1_4:7401321-7401340 | None:intergenic | 35.0% | |
| CATGAGAGACACGTAAATAT+TGG | + | chr1_4:7401331-7401350 | None:intergenic | 35.0% | |
| CAATATTTACGTGTCTCTCA+TGG | - | chr1_4:7401329-7401348 | Msa0147460:CDS | 35.0% | |
| TAGCTATAGTATATGCTACC+TGG | + | chr1_4:7401521-7401540 | None:intergenic | 35.0% | |
| !! | ATATCCTCTCACTTGTTTTC+AGG | - | chr1_4:7401776-7401795 | Msa0147460:intron | 35.0% |
| ATTTCCTGAAAACAAGTGAG+AGG | + | chr1_4:7401783-7401802 | None:intergenic | 35.0% | |
| ATCCATTATTTGCACCTGTA+AGG | + | chr1_4:7401847-7401866 | None:intergenic | 35.0% | |
| TTCACATGAAGAATTCCAAC+TGG | + | chr1_4:7401987-7402006 | None:intergenic | 35.0% | |
| ACAAGAACTTGAATCCAGAA+TGG | - | chr1_4:7402120-7402139 | Msa0147460:intron | 35.0% | |
| TTGGATGTAAGATTATCAGC+AGG | - | chr1_4:7402254-7402273 | Msa0147460:CDS | 35.0% | |
| !!! | GGAAACTTTTAGAGTGTGTT+TGG | - | chr1_4:7402275-7402294 | Msa0147460:CDS | 35.0% |
| !!! | ACTTTTAGAGTGTGTTTGGA+TGG | - | chr1_4:7402279-7402298 | Msa0147460:CDS | 35.0% |
| ! | TAACATTCTAAGGGTGTGTT+TGG | + | chr1_4:7402443-7402462 | None:intergenic | 35.0% |
| ! | TTTGGTGTAAGCTCTTTCAA+TGG | + | chr1_4:7402587-7402606 | None:intergenic | 35.0% |
| TTCTCATTCTCAGGATCATT+AGG | + | chr1_4:7402653-7402672 | None:intergenic | 35.0% | |
| TTAAATATAAGCCGCGCAAA+CGG | + | chr1_4:7402848-7402867 | None:intergenic | 35.0% | |
| TTTGCGCGGCTTATATTTAA+AGG | - | chr1_4:7402848-7402867 | Msa0147460:intron | 35.0% | |
| ! | TAACTGCTTTGGATCATTGA+TGG | - | chr1_4:7403093-7403112 | Msa0147460:intron | 35.0% |
| GCACAATTGCCATAAAACAA+TGG | + | chr1_4:7403292-7403311 | None:intergenic | 35.0% | |
| GGAAAAATAGAGATCCAAGA+TGG | - | chr1_4:7403321-7403340 | Msa0147460:intron | 35.0% | |
| ATAAAGTCTCTCATTGATGG+GGG | + | chr1_4:7403378-7403397 | None:intergenic | 35.0% | |
| CATAAAGTCTCTCATTGATG+GGG | + | chr1_4:7403379-7403398 | None:intergenic | 35.0% | |
| ATAAGTGCATCCTCAAAGTT+AGG | - | chr1_4:7403407-7403426 | Msa0147460:intron | 35.0% | |
| GAGTTTCCTGATTCAAAACA+AGG | + | chr1_4:7403514-7403533 | None:intergenic | 35.0% | |
| !! | GTTTTGAATCAGGAAACTCT+TGG | - | chr1_4:7403515-7403534 | Msa0147460:intron | 35.0% |
| AGATTCAAATTGAGCTTCAG+TGG | - | chr1_4:7403621-7403640 | Msa0147460:CDS | 35.0% | |
| AGAACCCCATAATGAATGAT+TGG | - | chr1_4:7403644-7403663 | Msa0147460:intron | 35.0% | |
| CTGACCAATCATTCATTATG+GGG | + | chr1_4:7403651-7403670 | None:intergenic | 35.0% | |
| TTGGTCAGTAGTAAATAGGA+TGG | - | chr1_4:7403663-7403682 | Msa0147460:intron | 35.0% | |
| ATGCATGTAACATGGAAGTT+TGG | - | chr1_4:7403706-7403725 | Msa0147460:intron | 35.0% | |
| ! | AAACTCCAGGGTCAAATTTT+AGG | - | chr1_4:7403991-7404010 | Msa0147460:five_prime_UTR | 35.0% |
| TTTCTCCTAAAATTTGACCC+TGG | + | chr1_4:7403999-7404018 | None:intergenic | 35.0% | |
| GGATCCTACATTTACTCCTT+TGG | - | chr1_4:7400463-7400482 | Msa0147460:CDS | 40.0% | |
| TTAGCTTCTTGCTCAACCAA+AGG | + | chr1_4:7400482-7400501 | None:intergenic | 40.0% | |
| TGCTTCCAGAAATACCCTTA+TGG | - | chr1_4:7400516-7400535 | Msa0147460:CDS | 40.0% | |
| CAACAGTTCAGGTATTTCTC+CGG | - | chr1_4:7401125-7401144 | Msa0147460:intron | 40.0% | |
| AAAGGCTTCAACATTATGCG+CGG | + | chr1_4:7401285-7401304 | None:intergenic | 40.0% | |
| CAAGGAAAACTAGGAACCAA+AGG | + | chr1_4:7401303-7401322 | None:intergenic | 40.0% | |
| TTGGCGAAACAAGGAAAACT+AGG | + | chr1_4:7401312-7401331 | None:intergenic | 40.0% | |
| TTACGTGTCTCTCATGGAAA+AGG | - | chr1_4:7401335-7401354 | Msa0147460:CDS | 40.0% | |
| !!! | TTGCAGCCACATGTTGATTT+TGG | - | chr1_4:7401441-7401460 | Msa0147460:CDS | 40.0% |
| ! | TGTCTATTCCTGGTCTTTAC+AGG | - | chr1_4:7401490-7401509 | Msa0147460:CDS | 40.0% |
| ! | TTTGGATGGCGTGAATGTTT+TGG | - | chr1_4:7402293-7402312 | Msa0147460:intron | 40.0% |
| CCAAACTAGTTAACCACCAT+AGG | + | chr1_4:7402533-7402552 | None:intergenic | 40.0% | |
| CCTATGGTGGTTAACTAGTT+TGG | - | chr1_4:7402530-7402549 | Msa0147460:intron | 40.0% | |
| ! | GGTGGTTAACTAGTTTGGAA+AGG | - | chr1_4:7402535-7402554 | Msa0147460:intron | 40.0% |
| TTTGGAAAGGCTGAGAAGAT+GGG | - | chr1_4:7402548-7402567 | Msa0147460:intron | 40.0% | |
| GAATTCAGAAGACACGGAAA+AGG | - | chr1_4:7402736-7402755 | Msa0147460:intron | 40.0% | |
| CTTCAACATCTTCAGCTTCA+TGG | + | chr1_4:7402808-7402827 | None:intergenic | 40.0% | |
| CATGAAGCTGAAGATGTTGA+AGG | - | chr1_4:7402806-7402825 | Msa0147460:CDS | 40.0% | |
| AACTTGTCGCACAAGTAAAC+TGG | + | chr1_4:7403137-7403156 | None:intergenic | 40.0% | |
| TGAAATGTTTCACCCCATCT+TGG | + | chr1_4:7403338-7403357 | None:intergenic | 40.0% | |
| TAAAGTCTCTCATTGATGGG+GGG | + | chr1_4:7403377-7403396 | None:intergenic | 40.0% | |
| TCAGGAAACTCTTGGATATG+TGG | - | chr1_4:7403523-7403542 | Msa0147460:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | + | chr1_4:7403941-7403960 | None:intergenic | 40.0% |
| CCAGAGTAGTACTTCTTGTG+TGG | + | chr1_4:7400032-7400051 | None:intergenic | 45.0% | |
| !! | CCACACAAGAAGTACTACTC+TGG | - | chr1_4:7400029-7400048 | Msa0147460:three_prime_UTR | 45.0% |
| ! | TCTCTGCCACCAACTTTTCA+AGG | - | chr1_4:7400898-7400917 | Msa0147460:intron | 45.0% |
| CGATTACGGTCCGCTAAATA+TGG | + | chr1_4:7401176-7401195 | None:intergenic | 45.0% | |
| GCGCATAATGTTGAAGCCTT+TGG | - | chr1_4:7401284-7401303 | Msa0147460:CDS | 45.0% | |
| GCAGATGCAATGTCTATTCC+TGG | - | chr1_4:7401480-7401499 | Msa0147460:CDS | 45.0% | |
| TGGACAATCCTGTAAAGACC+AGG | + | chr1_4:7401501-7401520 | None:intergenic | 45.0% | |
| TGGTCTTTACAGGATTGTCC+AGG | - | chr1_4:7401500-7401519 | Msa0147460:CDS | 45.0% | |
| ATTTGCACCTGTAAGGCCTT+AGG | + | chr1_4:7401840-7401859 | None:intergenic | 45.0% | |
| GGCCTTACAGGTGCAAATAA+TGG | - | chr1_4:7401842-7401861 | Msa0147460:intron | 45.0% | |
| AGGGCCATGAAAAAACCAGT+TGG | - | chr1_4:7401969-7401988 | Msa0147460:CDS | 45.0% | |
| GTTTGGAAAGGCTGAGAAGA+TGG | - | chr1_4:7402547-7402566 | Msa0147460:intron | 45.0% | |
| AAAAGCAAACCACCACTAGC+AGG | + | chr1_4:7402776-7402795 | None:intergenic | 45.0% | |
| GCGGCTTATATTTAAAGGCG+AGG | - | chr1_4:7402853-7402872 | Msa0147460:intron | 45.0% | |
| AGGCGAGGAAAGAAAAACCA+AGG | - | chr1_4:7402868-7402887 | Msa0147460:intron | 45.0% | |
| ATCAAATTCATTGCCGCGTC+CGG | - | chr1_4:7403218-7403237 | Msa0147460:CDS | 45.0% | |
| !! | AAACTCTAAAACACCGGACG+CGG | + | chr1_4:7403234-7403253 | None:intergenic | 45.0% |
| TGGCAATTGTGCAGCATGTA+AGG | - | chr1_4:7403300-7403319 | Msa0147460:intron | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | + | chr1_4:7403942-7403961 | None:intergenic | 45.0% | |
| ! | TGGTTTGCGAGCAACAGTTC+AGG | - | chr1_4:7401114-7401133 | Msa0147460:intron | 50.0% |
| TTTGTGGCCTAAGGCCTTAC+AGG | - | chr1_4:7401830-7401849 | Msa0147460:intron | 50.0% | |
| CCACGTGACTTCTCATTCTC+AGG | + | chr1_4:7402662-7402681 | None:intergenic | 50.0% | |
| CCTGAGAATGAGAAGTCACG+TGG | - | chr1_4:7402659-7402678 | Msa0147460:intron | 50.0% | |
| GTCACGTGGAGAGCTTATTG+TGG | - | chr1_4:7402673-7402692 | Msa0147460:intron | 50.0% | |
| ACCACACAAATCCGTTTGCG+CGG | - | chr1_4:7402834-7402853 | Msa0147460:intron | 50.0% | |
| ATGCAGCAGGCCTAACTTTG+AGG | + | chr1_4:7403420-7403439 | None:intergenic | 50.0% | |
| GTGTTACCTTTGGATGCAGC+AGG | + | chr1_4:7403433-7403452 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | + | chr1_4:7403946-7403965 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | - | chr1_4:7403943-7403962 | Msa0147460:CDS | 50.0% | |
| GACACGGAAAAGGCTCCAGA+AGG | - | chr1_4:7402746-7402765 | Msa0147460:intron | 55.0% | |
| CCACTAGCAGGTGTTCCTTC+TGG | + | chr1_4:7402764-7402783 | None:intergenic | 55.0% | |
| CCAGAAGGAACACCTGCTAG+TGG | - | chr1_4:7402761-7402780 | Msa0147460:CDS | 55.0% | |
| GAAGGAACACCTGCTAGTGG+TGG | - | chr1_4:7402764-7402783 | Msa0147460:CDS | 55.0% | |
| GTTAGGCCTGCTGCATCCAA+AGG | - | chr1_4:7403424-7403443 | Msa0147460:CDS | 55.0% | |
| ! | GCCGCGCAAACGGATTTGTG+TGG | + | chr1_4:7402838-7402857 | None:intergenic | 60.0% |
| ! | GGTGTCGGGGATTCGAACCC+CGG | - | chr1_4:7403892-7403911 | Msa0147460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 7399928 | 7404176 | 7399928 | ID=Msa0147460;Name=Msa0147460 |
| chr1_4 | mRNA | 7399928 | 7404176 | 7399928 | ID=Msa0147460-mRNA-1;Parent=Msa0147460;Name=Msa0147460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=212|0.91|0.92|1|0.83|0.76|13|439|533 |
| chr1_4 | exon | 7399928 | 7400091 | 7399928 | ID=Msa0147460-mRNA-1:exon:3237;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7400174 | 7400577 | 7400174 | ID=Msa0147460-mRNA-1:exon:3236;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7400659 | 7400790 | 7400659 | ID=Msa0147460-mRNA-1:exon:3235;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7401215 | 7401556 | 7401215 | ID=Msa0147460-mRNA-1:exon:3234;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7401887 | 7402133 | 7401887 | ID=Msa0147460-mRNA-1:exon:3233;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7402230 | 7402306 | 7402230 | ID=Msa0147460-mRNA-1:exon:3232;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7402589 | 7402657 | 7402589 | ID=Msa0147460-mRNA-1:exon:3231;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7402748 | 7402849 | 7402748 | ID=Msa0147460-mRNA-1:exon:3230;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7402969 | 7403087 | 7402969 | ID=Msa0147460-mRNA-1:exon:3229;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7403185 | 7403308 | 7403185 | ID=Msa0147460-mRNA-1:exon:3228;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7403410 | 7403460 | 7403410 | ID=Msa0147460-mRNA-1:exon:3227;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7403542 | 7403640 | 7403542 | ID=Msa0147460-mRNA-1:exon:3226;Parent=Msa0147460-mRNA-1 |
| chr1_4 | exon | 7403854 | 7404176 | 7403854 | ID=Msa0147460-mRNA-1:exon:3225;Parent=Msa0147460-mRNA-1 |
| chr1_4 | five_prime_UTR | 7403965 | 7404176 | 7403965 | ID=Msa0147460-mRNA-1:five_prime_utr;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7403854 | 7403964 | 7403854 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7403542 | 7403640 | 7403542 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7403410 | 7403460 | 7403410 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7403185 | 7403308 | 7403185 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7402969 | 7403087 | 7402969 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7402748 | 7402849 | 7402748 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7402589 | 7402657 | 7402589 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7402230 | 7402306 | 7402230 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7401887 | 7402133 | 7401887 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7401215 | 7401556 | 7401215 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7400659 | 7400790 | 7400659 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | CDS | 7400449 | 7400577 | 7400449 | ID=Msa0147460-mRNA-1:cds;Parent=Msa0147460-mRNA-1 |
| chr1_4 | three_prime_UTR | 7400174 | 7400448 | 7400174 | ID=Msa0147460-mRNA-1:three_prime_utr;Parent=Msa0147460-mRNA-1 |
| chr1_4 | three_prime_UTR | 7399928 | 7400091 | 7399928 | ID=Msa0147460-mRNA-1:three_prime_utr;Parent=Msa0147460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
