AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006440 MtrunA17_Chr1g0149661 96.965 1186 27 2 1 1180 1 1183 0.0 2356
Msa0006440 MtrunA17_Chr7g0242931 96.319 163 6 0 1018 1180 1 163 8.36e-104 324
Msa0006440 MtrunA17_Chr7g0242921 98.374 123 2 0 793 915 4 126 6.83e-77 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006440 AT5G11040.1 72.856 1201 285 7 1 1178 1 1183 0.0 1771

Find 343 sgRNAs with CRISPR-Local

Find 681 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCTTCTTGATATTATT+TGG 0.142689 1_1:-9328548 None:intergenic
TCTCTATCAATTCTTGTTTC+AGG 0.164099 1_1:-9330075 None:intergenic
CCTCCAAGACTGAATCTTTC+TGG 0.194082 1_1:-9326648 None:intergenic
TTGTCCTTTCTGACCCTTTC+CGG 0.200181 1_1:+9328864 Msa0006440:CDS
TCAAAAGTGATTACCTTATC+TGG 0.214772 1_1:+9328722 Msa0006440:CDS
CAATGATATCATAACATTTA+AGG 0.228038 1_1:-9330957 None:intergenic
GATGAGTGAAAGGGGATTTC+TGG 0.228067 1_1:-9322903 None:intergenic
CAAGAGCTTGTTTGGATTGT+TGG 0.242503 1_1:+9328566 Msa0006440:CDS
TGATGGGCAACTTGCATCTT+TGG 0.245776 1_1:-9329227 None:intergenic
TGGTGTGGAGAGGGAGGAGG+AGG 0.261929 1_1:-9322843 None:intergenic
TATATTTGCAGCAAGAAAAT+AGG 0.266225 1_1:+9327620 Msa0006440:CDS
GAACCTTGTATCTAGGATTA+AGG 0.266419 1_1:+9330257 Msa0006440:CDS
GATTGTCAACCTCTTTAAAT+AGG 0.275718 1_1:-9328817 None:intergenic
ATGAGTATCCTTCGATAAAA+AGG 0.281491 1_1:-9330157 None:intergenic
AATTAGCAAGGTTCCTTTGC+AGG 0.285948 1_1:+9326939 Msa0006440:CDS
CCCAGTAAATACCTTATAAA+AGG 0.291744 1_1:-9328254 None:intergenic
TCAAGAAGCAAGAGCTTGTT+TGG 0.301373 1_1:+9328558 Msa0006440:CDS
GGTTGACTGGGGATTACTTC+TGG 0.316520 1_1:+9324755 Msa0006440:CDS
ACAGATACATTCTTCAACTT+TGG 0.316860 1_1:-9328899 None:intergenic
GATTTGTCCGATTGGGATTA+CGG 0.317235 1_1:-9322791 None:intergenic
ATGTGCAAGCACGGAACTTT+TGG 0.317662 1_1:-9330475 None:intergenic
GAGGTTGACAATCTGCTTCT+TGG 0.317861 1_1:+9328827 Msa0006440:CDS
GGGCAGTGTTTGTGCCTTGC+TGG 0.328611 1_1:+9324795 Msa0006440:CDS
TGGGTGGGTTCTGCTCCTTC+AGG 0.330924 1_1:+9328491 Msa0006440:CDS
GAGCCTTCTATGCTTACTTC+TGG 0.330957 1_1:-9322751 None:intergenic
CGATTGGGATTACGGCGATT+TGG 0.336614 1_1:-9322783 None:intergenic
CCCTTTCACTCATCAACCTT+GGG 0.336759 1_1:+9322912 Msa0006440:CDS
CTGCCAGATCCATTGACATT+TGG 0.341429 1_1:+9330372 Msa0006440:CDS
AGCTTCAAGTTCAAAAGTTA+TGG 0.342226 1_1:-9326909 None:intergenic
AATTAGTGCAATGCAAGTTT+TGG 0.343520 1_1:+9327651 Msa0006440:CDS
GCTTCTTCACAGAAGGGAAT+TGG 0.344096 1_1:+9327957 Msa0006440:intron
AGGTTGACAATCTGCTTCTT+GGG 0.344226 1_1:+9328828 Msa0006440:CDS
ACTTCTGCTCCAGGCTTTAG+AGG 0.346228 1_1:-9329139 None:intergenic
GTGGGGCCAGTTACAATTCC+TGG 0.348650 1_1:+9328758 Msa0006440:CDS
GTGCTTCAAGCAGAATCTTC+TGG 0.351663 1_1:+9324121 Msa0006440:CDS
CTGCTTCTTGGGGCCGCACA+AGG 0.353156 1_1:+9328839 Msa0006440:CDS
AACTATTCTCAAGACGCCTT+TGG 0.355364 1_1:+9324144 Msa0006440:CDS
CTAAAATGTGTAGATTTCAT+TGG 0.356215 1_1:+9330984 Msa0006440:three_prime_UTR
GGATGGTGTGGAGAGGGAGG+AGG 0.358454 1_1:-9322846 None:intergenic
AATATGTAATTACAGAATCT+TGG 0.359621 1_1:-9329090 None:intergenic
GGGTGCATCGTTCATTGTTT+TGG 0.360616 1_1:+9328779 Msa0006440:CDS
CCATATCACCTTCGTGTCCT+TGG 0.364148 1_1:+9330913 Msa0006440:CDS
TTGTATCCTTTGTGTTATTA+CGG 0.365309 1_1:-9330524 None:intergenic
GAAATATGTGCCTGCTCAAT+TGG 0.367411 1_1:-9329052 None:intergenic
TATGCTTACTTCTGGTTCCA+TGG 0.373034 1_1:-9322743 None:intergenic
CGGAAAACTCTTGCTGTTGT+TGG 0.374126 1_1:+9323009 Msa0006440:CDS
TGTGACTTTGCGAGCCTGGC+AGG 0.384242 1_1:+9329171 Msa0006440:CDS
TCCCTGTGACTTTGCGAGCC+TGG 0.385006 1_1:+9329167 Msa0006440:CDS
TGCCCAGCAGGAGTTATTAG+AGG 0.387649 1_1:-9328155 None:intergenic
TTAGAACTTGGCAGGTTGAC+TGG 0.390020 1_1:+9324742 Msa0006440:CDS
GTCAGTACCTGAGAATCATT+AGG 0.390027 1_1:-9323141 None:intergenic
GCATCAAGAACCTTGTATCT+AGG 0.391477 1_1:+9330250 Msa0006440:CDS
ACTCATCAACCTTGGGATTC+CGG 0.391628 1_1:+9322919 Msa0006440:CDS
AGTAGCTGCTTCGTTGCTAA+TGG 0.391799 1_1:+9324084 Msa0006440:CDS
AGAGAGGGATGGTGTGGAGA+GGG 0.393478 1_1:-9322852 None:intergenic
AATCAACGTCTCTGTCAAAC+TGG 0.398645 1_1:+9329993 Msa0006440:CDS
ATTGAAATAGCTCGTTTGTA+TGG 0.404662 1_1:+9327544 Msa0006440:CDS
ATGATGCAAATGACATCCTT+CGG 0.406458 1_1:+9330839 Msa0006440:CDS
GCGGCGCTACTCCTAGTCCC+TGG 0.407772 1_1:+9322968 Msa0006440:CDS
ATAACTCCTGCTGGGCAAAA+TGG 0.407856 1_1:+9328161 Msa0006440:CDS
CTGGTATGCTGGTGCATTGG+AGG 0.411810 1_1:+9324774 Msa0006440:CDS
CCAAGGACACGAAGGTGATA+TGG 0.412809 1_1:-9330913 None:intergenic
TTTCTGGTGTTCGGTGTAGA+AGG 0.415171 1_1:-9322887 None:intergenic
GAATTTGAAGCGGAGGGAAC+CGG 0.416629 1_1:-9322938 None:intergenic
CTTGATGCAAGCATTGAGTT+CGG 0.417286 1_1:-9330235 None:intergenic
GATTGGTGATTACTGCTTGC+TGG 0.418376 1_1:+9324678 Msa0006440:CDS
TCTCATTGTTTGAGTCTCAA+TGG 0.418502 1_1:+9328024 Msa0006440:CDS
TATCTAGGATTAAGGTTCAA+TGG 0.422699 1_1:+9330265 Msa0006440:CDS
TTTGGATCTCCTTTACTGAA+TGG 0.426418 1_1:-9328530 None:intergenic
GGACAATCATTTAGCTGATC+AGG 0.428176 1_1:+9330032 Msa0006440:CDS
GAACCAGAAGTAAGCATAGA+AGG 0.431743 1_1:+9322748 Msa0006440:CDS
ATCCTTCTTCGCTTGTTGAT+CGG 0.432135 1_1:+9323103 Msa0006440:CDS
AGGAGTTATTAGAGGATAGT+AGG 0.433187 1_1:-9328147 None:intergenic
GAGGGATGGTGTGGAGAGGG+AGG 0.433746 1_1:-9322849 None:intergenic
GCTTCAAGTTCAAAAGTTAT+GGG 0.435968 1_1:-9326908 None:intergenic
TGTTCATTGTCCTTCTTCGT+TGG 0.436041 1_1:+9323035 Msa0006440:CDS
TTCTTATAAATTGGGACGTA+GGG 0.436323 1_1:+9322645 Msa0006440:five_prime_UTR
CTACCAGGGGATACAGCGTT+TGG 0.436996 1_1:-9329712 None:intergenic
ATGCACCCAGGAATTGTAAC+TGG 0.438031 1_1:-9328764 None:intergenic
TTTCTCTTAATACAACCATC+TGG 0.441510 1_1:-9328055 None:intergenic
GCGAGTAGTGTATACTCTCC+TGG 0.443030 1_1:-9330802 None:intergenic
TAATGAGCATTAGCATCAAC+AGG 0.443400 1_1:-9324709 None:intergenic
CACTCGGGACGCAATAGCTC+TGG 0.443783 1_1:+9330288 Msa0006440:CDS
TGCCTGCATTTCCTTGTCCC+AGG 0.444036 1_1:+9330784 Msa0006440:CDS
CATATCACCTTCGTGTCCTT+GGG 0.444898 1_1:+9330914 Msa0006440:CDS
ACATCCTTCGGGCTCGTGCT+AGG 0.445240 1_1:+9330851 Msa0006440:CDS
GGTCCACAGAACAGTTGATT+TGG 0.445826 1_1:-9330607 None:intergenic
GAAGGCTCAGCTGCTTTCAA+TGG 0.446313 1_1:+9329786 Msa0006440:CDS
AAGCCAAATGTCAATGGATC+TGG 0.450498 1_1:-9330375 None:intergenic
TCACATGTTGTTGGAGGTGA+TGG 0.451055 1_1:+9328962 Msa0006440:CDS
CTCAATCAACAGGCGAGAGC+TGG 0.452261 1_1:+9327438 Msa0006440:intron
TATCCTCTAATAACTCCTGC+TGG 0.452837 1_1:+9328152 Msa0006440:CDS
ATGGTTTCAGATTGACCGTA+TGG 0.453665 1_1:+9326624 Msa0006440:intron
CCCCTTTCACTCATCAACCT+TGG 0.454492 1_1:+9322911 Msa0006440:CDS
GGTGATTACTGCTTGCTGGC+AGG 0.454639 1_1:+9324682 Msa0006440:CDS
GTGTGGAATGCAGGTTATCA+AGG 0.455128 1_1:+9324621 Msa0006440:intron
ATTTCAAATACAACATCAGT+TGG 0.456769 1_1:-9329973 None:intergenic
CTACTGCATTAGAACTTGGC+AGG 0.458193 1_1:+9324734 Msa0006440:CDS
GAGAGAGGGATGGTGTGGAG+AGG 0.458259 1_1:-9322853 None:intergenic
ATATATCTGTCCGTGCATTC+AGG 0.460003 1_1:+9328653 Msa0006440:CDS
GGGACAACAAGGCGTCTACC+AGG 0.460309 1_1:-9329727 None:intergenic
TGATGCAAATGACATCCTTC+GGG 0.461950 1_1:+9330840 Msa0006440:CDS
GGGGATTACTTCTGGTATGC+TGG 0.464148 1_1:+9324763 Msa0006440:CDS
GTGGTGGGATTTGTCCGATT+GGG 0.465220 1_1:-9322798 None:intergenic
TACTGAACACCTATTTAAAG+AGG 0.466112 1_1:+9328808 Msa0006440:CDS
TACATGCGGGAATGCTCCTT+GGG 0.466197 1_1:+9331032 Msa0006440:three_prime_UTR
TTACATGCGGGAATGCTCCT+TGG 0.466200 1_1:+9331031 Msa0006440:three_prime_UTR
AAAAGAAAGCGGCTTTCCTC+TGG 0.467812 1_1:-9327579 None:intergenic
TGCCAGGCTCGCAAAGTCAC+AGG 0.470335 1_1:-9329169 None:intergenic
GCTGCACTCCATGCAGTAAG+AGG 0.471222 1_1:-9328107 None:intergenic
GCTCGTTTGTATGGTAGTCT+TGG 0.472390 1_1:+9327553 Msa0006440:CDS
TCCCGTCCACCCAACACAAA+TGG 0.473371 1_1:+9328433 Msa0006440:CDS
TTATTCACATCGTCCAACTT+AGG 0.473819 1_1:-9329838 None:intergenic
TCAGTACCTGAGAATCATTA+GGG 0.475155 1_1:-9323140 None:intergenic
GAAAGGGGATTTCTGGTGTT+CGG 0.475787 1_1:-9322896 None:intergenic
AAATATCAAGGATGCTATCC+AGG 0.476891 1_1:+9330317 Msa0006440:CDS
TAACAATGTCCATTTGTGTT+GGG 0.477618 1_1:-9328442 None:intergenic
TAGTCGCGGAGGAGTGGTGG+TGG 0.479581 1_1:-9322814 None:intergenic
GGATCAGATAAACCTGATGA+TGG 0.481993 1_1:+9327978 Msa0006440:CDS
CAGGCACATATTTCACTCTC+CGG 0.482438 1_1:+9329061 Msa0006440:CDS
TAGTGAAAATCTTCCTAAGT+TGG 0.483087 1_1:+9329825 Msa0006440:CDS
AGAGCTGGCCAAGGAGGTGG+TGG 0.483178 1_1:+9327453 Msa0006440:CDS
GCGAGAGCTGGCCAAGGAGG+TGG 0.483372 1_1:+9327450 Msa0006440:CDS
TAGAACTTGGCAGGTTGACT+GGG 0.483445 1_1:+9324743 Msa0006440:CDS
CTTCTGGTATGCTGGTGCAT+TGG 0.484130 1_1:+9324771 Msa0006440:CDS
TCCATTTGTGTTGGGTGGAC+GGG 0.486188 1_1:-9328434 None:intergenic
TCTGACCCTTTCCGGTGTTG+TGG 0.487155 1_1:+9328872 Msa0006440:CDS
AGCTTGAAGCCAAATGTCAA+TGG 0.491076 1_1:-9330381 None:intergenic
TATTCTACTGCATTAGAACT+TGG 0.491972 1_1:+9324730 Msa0006440:CDS
GTCTGCCACACCAACCTGCC+AGG 0.491985 1_1:-9329185 None:intergenic
TGAAAATCTTCCCAGGGACT+AGG 0.493935 1_1:-9322979 None:intergenic
GAGATCCACAACACCGGAAA+GGG 0.494540 1_1:-9328877 None:intergenic
TCTCACCTCCCTCTAAAGCC+TGG 0.499750 1_1:+9329130 Msa0006440:CDS
GGTGGTGGGATTTGTCCGAT+TGG 0.500251 1_1:-9322799 None:intergenic
GGTGTGGAGAGGGAGGAGGA+GGG 0.500921 1_1:-9322842 None:intergenic
TGCTTCTTGGGGCCGCACAA+GGG 0.501706 1_1:+9328840 Msa0006440:CDS
TAGATCCTTTCAGAGGAAGC+TGG 0.501791 1_1:+9329917 Msa0006440:CDS
GATTGTTGGAGAGCCGATCC+AGG 0.503397 1_1:+9328580 Msa0006440:CDS
TTCGCCTTCGTACAAAATGA+TGG 0.503615 1_1:-9328987 None:intergenic
CACCGATCAACAAGCGAAGA+AGG 0.503827 1_1:-9323105 None:intergenic
CATCCTTCGGGCTCGTGCTA+GGG 0.504649 1_1:+9330852 Msa0006440:CDS
CCAGAAAGATTCAGTCTTGG+AGG 0.504741 1_1:+9326648 Msa0006440:CDS
CTCCGCTTCAAATTCGTACT+CGG 0.505345 1_1:+9322946 Msa0006440:CDS
TAACAACTCCACCACCTCCT+TGG 0.507827 1_1:-9327461 None:intergenic
TAAATACCTTATAAAAGGTA+AGG 0.508239 1_1:-9328249 None:intergenic
CTGCTCTCTGCAGTTCGTGC+CGG 0.511210 1_1:+9328080 Msa0006440:CDS
ATTTACACGCCATTCAGTAA+AGG 0.511869 1_1:+9328521 Msa0006440:CDS
GCTGGGGAAAACTGTGTAGA+TGG 0.512642 1_1:+9330582 Msa0006440:CDS
TTTCAACGGTAATTTCGCTC+AGG 0.512778 1_1:-9330729 None:intergenic
TGAGTTAACATGTCCTCCAT+TGG 0.513603 1_1:-9329866 None:intergenic
TACCTTATAAAAGGTAAGGC+GGG 0.513806 1_1:-9328245 None:intergenic
AGATCCTTTCAGAGGAAGCT+GGG 0.514227 1_1:+9329918 Msa0006440:CDS
CTCTGGAGAGTTAAATATCA+AGG 0.515060 1_1:+9330305 Msa0006440:CDS
CTGAATGGCGTGTAAATGAA+AGG 0.515796 1_1:-9328515 None:intergenic
TTGTGTTGGGTGGACGGGAA+AGG 0.516631 1_1:-9328429 None:intergenic
CCTGCAAAACACAAATCTGC+AGG 0.517169 1_1:-9329750 None:intergenic
GTCCATTTGTGTTGGGTGGA+CGG 0.520439 1_1:-9328435 None:intergenic
CTCCTGGGACAAGGAAATGC+AGG 0.522068 1_1:-9330786 None:intergenic
CTGAATCTTTCTGGCCCATA+CGG 0.522318 1_1:-9326639 None:intergenic
GATTACGGCGATTTGGATTG+TGG 0.523429 1_1:-9322776 None:intergenic
AGGAGCTGATGGCGGAGAGA+GGG 0.524010 1_1:-9322867 None:intergenic
CGGCGCTACTCCTAGTCCCT+GGG 0.524039 1_1:+9322969 Msa0006440:CDS
TCCCAAGGTTGATGAGTGAA+AGG 0.524266 1_1:-9322913 None:intergenic
GTGCAGCGGCACGACTACTT+AGG 0.524396 1_1:+9328123 Msa0006440:CDS
ATTACATGCAGAGATGTAGC+TGG 0.525604 1_1:+9330564 Msa0006440:CDS
GCGTAGTGTATCAATAGTGA+TGG 0.526963 1_1:-9329244 None:intergenic
CCATGCAGTAAGAGGATCTC+CGG 0.527019 1_1:-9328099 None:intergenic
GGTAAAAGGCTTATGCTCAC+AGG 0.527206 1_1:-9328692 None:intergenic
AATGATTGATTTGCTGAAGT+GGG 0.529185 1_1:-9330756 None:intergenic
GATCAGGATGGTACAGAATA+CGG 0.531825 1_1:+9330048 Msa0006440:CDS
GGATCGGCACAACGAGTCCC+TGG 0.532322 1_1:-9328224 None:intergenic
TCGTGATGTGTGGATAAGTC+TGG 0.534628 1_1:+9329012 Msa0006440:CDS
CACATTATGAATAGAATGAT+CGG 0.534933 1_1:-9327719 None:intergenic
ATCAAAATTTCCTGAATGCA+CGG 0.536547 1_1:-9328663 None:intergenic
CTTCAAGTTCAAAAGTTATG+GGG 0.536977 1_1:-9326907 None:intergenic
TGGGGCCAGTTACAATTCCT+GGG 0.537460 1_1:+9328759 Msa0006440:CDS
CCCAAGGTTGATGAGTGAAA+GGG 0.539368 1_1:-9322912 None:intergenic
CAAACAATGAGACAACTGAT+TGG 0.539844 1_1:-9328013 None:intergenic
GGGAATGTAACTTCTGCTCC+AGG 0.541889 1_1:-9329148 None:intergenic
TCGAAGGATACTCATACAGA+TGG 0.542641 1_1:+9330165 Msa0006440:CDS
TTGCCAGTTCCACTAAAACC+TGG 0.543519 1_1:-9328598 None:intergenic
GATCCAAACGCTGTATCCCC+TGG 0.543677 1_1:+9329709 Msa0006440:CDS
TCATGTTCAAAGTAGATCAT+CGG 0.543789 1_1:+9327693 Msa0006440:CDS
GAGTAGTAGTCGCGGAGGAG+TGG 0.543919 1_1:-9322820 None:intergenic
AAGCTACTTTGAAATTAGCA+AGG 0.545319 1_1:+9326927 Msa0006440:CDS
ATGCGATTGAAAATCTTCCC+AGG 0.546465 1_1:-9322986 None:intergenic
TATAAAAGGTAAGGCGGGAT+CGG 0.548365 1_1:-9328240 None:intergenic
GAATGATTGATTTGCTGAAG+TGG 0.548618 1_1:-9330757 None:intergenic
AGGCACATATTTCACTCTCC+GGG 0.549285 1_1:+9329062 Msa0006440:CDS
AACACCGGAAAGGGTCAGAA+AGG 0.549561 1_1:-9328868 None:intergenic
TGGTATGCTGGTGCATTGGA+GGG 0.550907 1_1:+9324775 Msa0006440:CDS
GGGAGTATATTTATATATGC+CGG 0.551740 1_1:+9322665 Msa0006440:five_prime_UTR
GGCGGTACTACAGAAATACT+TGG 0.553673 1_1:-9328923 None:intergenic
TGTGTGATCGCCGGAGTGGT+TGG 0.555157 1_1:-9322720 None:intergenic
TCTAACGTTGCACGATCCGC+AGG 0.555461 1_1:-9324034 None:intergenic
TGAATGGCGTGTAAATGAAA+GGG 0.555801 1_1:-9328514 None:intergenic
GTTCCATGGTGTGTGATCGC+CGG 0.557580 1_1:-9322729 None:intergenic
ACCCACCAGTCTTCTCTAGC+AGG 0.557700 1_1:-9328473 None:intergenic
TTGCTGATATCACATGTTGT+TGG 0.557933 1_1:+9328953 Msa0006440:CDS
TTTCTTATAAATTGGGACGT+AGG 0.558198 1_1:+9322644 Msa0006440:five_prime_UTR
CCGGAGATCCTCTTACTGCA+TGG 0.559260 1_1:+9328099 Msa0006440:CDS
TTACGGACCACAACTACCAT+TGG 0.559356 1_1:-9330507 None:intergenic
GAACCTTAATCCTAGATACA+AGG 0.559635 1_1:-9330260 None:intergenic
GATACTCATACAGATGGGAT+TGG 0.561442 1_1:+9330171 Msa0006440:CDS
AGGCACAGTTCCAATTGAGC+AGG 0.561990 1_1:+9329042 Msa0006440:CDS
CAATGTCCATTTGTGTTGGG+TGG 0.562440 1_1:-9328439 None:intergenic
TGATGTTGGAATGCCAGATA+AGG 0.562794 1_1:-9328735 None:intergenic
AGTCCCCAGCTTCCTCTGAA+AGG 0.562873 1_1:-9329922 None:intergenic
TCATTAAGATCCAACGAAGA+AGG 0.564032 1_1:-9323045 None:intergenic
TGCAAAACACAAATCTGCAG+GGG 0.564163 1_1:-9329748 None:intergenic
AAATCAACTGTTCTGTGGAC+CGG 0.564661 1_1:+9330609 Msa0006440:CDS
AGCAAAGAACGTACCTGCAA+AGG 0.566187 1_1:-9326952 None:intergenic
CTTCTGCTCCAGGCTTTAGA+GGG 0.566672 1_1:-9329138 None:intergenic
TGTGATATCAGCAATGGAAG+TGG 0.566866 1_1:-9328944 None:intergenic
TTAACAATGTCCATTTGTGT+TGG 0.569477 1_1:-9328443 None:intergenic
ACTCATACAGATGGGATTGG+TGG 0.569643 1_1:+9330174 Msa0006440:CDS
TGATAGAGATTGCTCAGCAA+GGG 0.570950 1_1:+9330089 Msa0006440:CDS
GGGCGTGCTCAGAAGACGAT+TGG 0.572358 1_1:+9324661 Msa0006440:CDS
GGACAACAAGGCGTCTACCA+GGG 0.572617 1_1:-9329726 None:intergenic
ATCCTCTAATAACTCCTGCT+GGG 0.573143 1_1:+9328153 Msa0006440:CDS
GCTAGAGAAGACTGGTGGGT+GGG 0.573445 1_1:+9328476 Msa0006440:CDS
GAGGATGGAAGTAAGAGAGG+TGG 0.574559 1_1:+9323992 Msa0006440:intron
CTGCTCCAGGCTTTAGAGGG+AGG 0.574626 1_1:-9329135 None:intergenic
TTACATGCAGAGATGTAGCT+GGG 0.574945 1_1:+9330565 Msa0006440:CDS
GATGTGAATAATAGTTCCAA+TGG 0.575519 1_1:+9329850 Msa0006440:CDS
TAGTAGTCGCGGAGGAGTGG+TGG 0.575604 1_1:-9322817 None:intergenic
CACATGTTGTTGGAGGTGAT+GGG 0.575704 1_1:+9328963 Msa0006440:CDS
GGGCCAGAAAGATTCAGTCT+TGG 0.576047 1_1:+9326645 Msa0006440:CDS
TTTAGCACCATCTGCAGCTG+TGG 0.576583 1_1:-9327485 None:intergenic
CAAATCGCCGTAATCCCAAT+CGG 0.577281 1_1:+9322784 Msa0006440:CDS
CGAGTAGTGTATACTCTCCT+GGG 0.578301 1_1:-9330801 None:intergenic
CTGATGTCTGTAGAGCAGCC+TGG 0.579675 1_1:-9330335 None:intergenic
AGTTCCACTAAAACCTGGAT+CGG 0.581203 1_1:-9328593 None:intergenic
CAGGCGAGAGCTGGCCAAGG+AGG 0.584702 1_1:+9327447 Msa0006440:intron
CATACAGATGGGATTGGTGG+AGG 0.584945 1_1:+9330177 Msa0006440:CDS
GCGAGCCTGGCAGGTTGGTG+TGG 0.585158 1_1:+9329180 Msa0006440:CDS
ACTTTGCGAGCCTGGCAGGT+TGG 0.586169 1_1:+9329175 Msa0006440:CDS
TGGTTTCAGATTGACCGTAT+GGG 0.586641 1_1:+9326625 Msa0006440:intron
TTTGCAGCAAGAAAATAGGC+TGG 0.586704 1_1:+9327624 Msa0006440:CDS
GATCAGATAAACCTGATGAT+GGG 0.586907 1_1:+9327979 Msa0006440:CDS
GTAATCCTGCTAGAGAAGAC+TGG 0.586982 1_1:+9328468 Msa0006440:CDS
GTAACTGGCCCCACTGATGT+TGG 0.587676 1_1:-9328749 None:intergenic
GGTTCAACTAGAAGAGCCCA+AGG 0.587863 1_1:-9331048 None:intergenic
TCGTCTGAGAGGCTACCACC+AGG 0.588338 1_1:+9328206 Msa0006440:CDS
CTGATATCACATGTTGTTGG+AGG 0.590200 1_1:+9328956 Msa0006440:CDS
GGTTGACAATCTGCTTCTTG+GGG 0.590336 1_1:+9328829 Msa0006440:CDS
AAGGAGCTGATGGCGGAGAG+AGG 0.590669 1_1:-9322868 None:intergenic
TTCGGTGTAGAAGGAGCTGA+TGG 0.592213 1_1:-9322878 None:intergenic
TTGATAGAGATTGCTCAGCA+AGG 0.593642 1_1:+9330088 Msa0006440:CDS
GTGTAAATGAAAGGGCCTGA+AGG 0.593793 1_1:-9328506 None:intergenic
TCTTAATACAACCATCTGGA+TGG 0.595104 1_1:-9328051 None:intergenic
GGTAATTTAAAATGCTCAAG+AGG 0.595211 1_1:-9330120 None:intergenic
GCTAATGGAGTTTGAGAAGT+GGG 0.596073 1_1:+9324099 Msa0006440:CDS
ATCTGGCATTCCAACATCAG+TGG 0.596723 1_1:+9328739 Msa0006440:CDS
CTTTCTCTCACTGTACTCAC+CGG 0.596874 1_1:-9322684 None:intergenic
TCTGGCATTCCAACATCAGT+GGG 0.597965 1_1:+9328740 Msa0006440:CDS
TTCAAGTTCAAAAGTTATGG+GGG 0.599554 1_1:-9326906 None:intergenic
GATTAAGGTTCAATGGCACT+CGG 0.600095 1_1:+9330272 Msa0006440:CDS
GGAGATCCACAACACCGGAA+AGG 0.601760 1_1:-9328878 None:intergenic
GTGTATACTCTCCTGGGACA+AGG 0.602418 1_1:-9330795 None:intergenic
CAACAGGCGAGAGCTGGCCA+AGG 0.602617 1_1:+9327444 Msa0006440:intron
ATGATTGATTTGCTGAAGTG+GGG 0.602966 1_1:-9330755 None:intergenic
CGTAGTGTATCAATAGTGAT+GGG 0.603034 1_1:-9329243 None:intergenic
TGTCACTTCATGTGCAAGCA+CGG 0.603329 1_1:-9330484 None:intergenic
CGAAGGATACTCATACAGAT+GGG 0.603853 1_1:+9330166 Msa0006440:CDS
CTGCAAAACACAAATCTGCA+GGG 0.604143 1_1:-9329749 None:intergenic
AGCTAGTCTCAGCTCAGAGG+AGG 0.605220 1_1:+9324174 Msa0006440:CDS
ATCCTGCTAGAGAAGACTGG+TGG 0.605317 1_1:+9328471 Msa0006440:CDS
CGAGTACGAATTTGAAGCGG+AGG 0.605922 1_1:-9322945 None:intergenic
AACGTTGCACGATCCGCAGG+TGG 0.606245 1_1:-9324031 None:intergenic
TGGATAAGTCTGGCTAATGC+AGG 0.606485 1_1:+9329022 Msa0006440:CDS
TGATTGATTTGCTGAAGTGG+GGG 0.606665 1_1:-9330754 None:intergenic
AATTTGTTCATGTATTCCCA+AGG 0.609780 1_1:-9330930 None:intergenic
TCCTGCTAGAGAAGACTGGT+GGG 0.609943 1_1:+9328472 Msa0006440:CDS
GATGCAGTTAAGTTACATGC+GGG 0.609996 1_1:+9331019 Msa0006440:three_prime_UTR
TTTGAAGTTATTTCCACCTG+CGG 0.611955 1_1:+9324018 Msa0006440:CDS
ATACCTTATAAAAGGTAAGG+CGG 0.612834 1_1:-9328246 None:intergenic
CCAAGGTTGATGAGTGAAAG+GGG 0.612894 1_1:-9322911 None:intergenic
CTCTTAAATCAAAGCCACAC+GGG 0.613079 1_1:-9328622 None:intergenic
TGCGATTGAAAATCTTCCCA+GGG 0.613211 1_1:-9322985 None:intergenic
AGAAAGGACAAGCCCTTGTG+CGG 0.613219 1_1:-9328852 None:intergenic
GTGAAAATAGATCCTTTCAG+AGG 0.613251 1_1:+9329910 Msa0006440:CDS
ACAACATGTGATATCAGCAA+TGG 0.613811 1_1:-9328950 None:intergenic
ATTAAGGTTCAATGGCACTC+GGG 0.614513 1_1:+9330273 Msa0006440:CDS
TTGCCCTAGCACGAGCCCGA+AGG 0.614923 1_1:-9330855 None:intergenic
AGTCGCGGAGGAGTGGTGGT+GGG 0.614993 1_1:-9322813 None:intergenic
TACAGCGTTTGGATCTTCAG+AGG 0.615727 1_1:-9329701 None:intergenic
GTACCAAATCAACTGTTCTG+TGG 0.615923 1_1:+9330604 Msa0006440:CDS
TGCTCTACAGACATCAGTCA+TGG 0.616999 1_1:+9330341 Msa0006440:CDS
GCCAGGCTCGCAAAGTCACA+GGG 0.617864 1_1:-9329168 None:intergenic
TTGTTAACCACAGCTGCAGA+TGG 0.620167 1_1:+9327478 Msa0006440:CDS
GTGAATAATAGTTCCAATGG+AGG 0.620898 1_1:+9329853 Msa0006440:CDS
CACTTTCGAATTCGTCTGAG+AGG 0.621141 1_1:+9328195 Msa0006440:CDS
CGGAGGGAACCGGAATCCCA+AGG 0.623091 1_1:-9322928 None:intergenic
GATTGATTTGCTGAAGTGGG+GGG 0.623100 1_1:-9330753 None:intergenic
TCAAGCTAGTCTCAGCTCAG+AGG 0.624717 1_1:+9324171 Msa0006440:CDS
TGGCGGAGAGAGGGATGGTG+TGG 0.630242 1_1:-9322858 None:intergenic
GCTGATGGCGGAGAGAGGGA+TGG 0.631938 1_1:-9322863 None:intergenic
AAGGCGAAATTCGTGATGTG+TGG 0.633725 1_1:+9329002 Msa0006440:CDS
GACAACAAGGCGTCTACCAG+GGG 0.638196 1_1:-9329725 None:intergenic
TGCTAGAGAAGACTGGTGGG+TGG 0.640194 1_1:+9328475 Msa0006440:CDS
GGAGGGAGTAGTAGTCGCGG+AGG 0.640489 1_1:-9322825 None:intergenic
CGCCGAGTACGAATTTGAAG+CGG 0.641107 1_1:-9322948 None:intergenic
CTCATCATAGTACAATTCAG+AGG 0.641887 1_1:-9331069 None:intergenic
TGATGCAGTTAAGTTACATG+CGG 0.647146 1_1:+9331018 Msa0006440:three_prime_UTR
AGAACTTGGCAGGTTGACTG+GGG 0.647954 1_1:+9324744 Msa0006440:CDS
ACATGTTGTTGGAGGTGATG+GGG 0.650111 1_1:+9328964 Msa0006440:CDS
TGCATCATCGATCACTGCTG+CGG 0.650676 1_1:-9330824 None:intergenic
GGAGGAGGGAGTAGTAGTCG+CGG 0.651516 1_1:-9322828 None:intergenic
GAAGGTGATATGGTGGTCCA+CGG 0.653228 1_1:-9330903 None:intergenic
TCAATGGAGTACCATCCAGA+TGG 0.655057 1_1:+9328040 Msa0006440:CDS
GATCCTTTCAGAGGAAGCTG+GGG 0.657023 1_1:+9329919 Msa0006440:CDS
AGACTAGCTTGAGAATCCAA+AGG 0.658315 1_1:-9324160 None:intergenic
ACTCCGGCGATCACACACCA+TGG 0.660032 1_1:+9322726 Msa0006440:exon
TGCTAATGGAGTTTGAGAAG+TGG 0.661306 1_1:+9324098 Msa0006440:CDS
AACCTGCCTCGAAAAGAAAG+CGG 0.664642 1_1:-9327590 None:intergenic
AAACAATGAACGATGCACCC+AGG 0.668346 1_1:-9328776 None:intergenic
ACTCTTAAATCAAAGCCACA+CGG 0.672459 1_1:-9328623 None:intergenic
CGCTTCAAATTCGTACTCGG+CGG 0.673401 1_1:+9322949 Msa0006440:CDS
AATCATTTAGCTGATCAGGA+TGG 0.677549 1_1:+9330036 Msa0006440:CDS
AAGTAACTAACCAACCACTC+CGG 0.678200 1_1:+9322710 Msa0006440:five_prime_UTR
GATATCAGCAATGGAAGTGG+CGG 0.679420 1_1:-9328941 None:intergenic
ACTTTGGAGATCCACAACAC+CGG 0.679528 1_1:-9328883 None:intergenic
GTGGAACTGGCAAACCCGTG+TGG 0.682034 1_1:+9328608 Msa0006440:CDS
ATGGTAGTCTTGGATACCAG+AGG 0.684438 1_1:+9327563 Msa0006440:CDS
AGGACACGAAGGTGATATGG+TGG 0.687570 1_1:-9330910 None:intergenic
AGTGACACCAATGGTAGTTG+TGG 0.687814 1_1:+9330500 Msa0006440:CDS
GGTGTAGAAGGAGCTGATGG+CGG 0.692050 1_1:-9322875 None:intergenic
TACATGCAGAGATGTAGCTG+GGG 0.693099 1_1:+9330566 Msa0006440:CDS
CGTCTGAGAGGCTACCACCA+GGG 0.694310 1_1:+9328207 Msa0006440:CDS
GCAAAACACAAATCTGCAGG+GGG 0.694387 1_1:-9329747 None:intergenic
ATGTATTCCCAAGGACACGA+AGG 0.694899 1_1:-9330921 None:intergenic
TGTGGTCCGTAATAACACAA+AGG 0.699660 1_1:+9330518 Msa0006440:CDS
GAGTACGAATTTGAAGCGGA+GGG 0.701036 1_1:-9322944 None:intergenic
ATGGTGTGTGATCGCCGGAG+TGG 0.702099 1_1:-9322724 None:intergenic
TCACTATTGATACACTACGC+CGG 0.717932 1_1:+9329247 Msa0006440:CDS
TCTTACTGCATGGAGTGCAG+CGG 0.723951 1_1:+9328109 Msa0006440:CDS
TGGCAGACGCTGATAATACG+AGG 0.731086 1_1:+9329200 Msa0006440:CDS
TGCACATGAAGTGACACCAA+TGG 0.732958 1_1:+9330491 Msa0006440:CDS
TCGGCACAACGAGTCCCTGG+TGG 0.742650 1_1:-9328221 None:intergenic
ACTGGAGAACAACAGTAACG+AGG 0.752836 1_1:+9330011 Msa0006440:CDS
AGTCACAAGATAATACTCAG+CGG 0.774464 1_1:+9326716 Msa0006440:CDS
CTGGCATTCCAACATCAGTG+GGG 0.781755 1_1:+9328741 Msa0006440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTGTTTTCTTAATA+AGG + chr1_1:9322609-9322628 Msa0006440:five_prime_UTR 10.0%
!!! TATTTTTGTTTTCTTAATAA+GGG + chr1_1:9322610-9322629 Msa0006440:five_prime_UTR 10.0%
!! TTAAAATTAGAAACATTATT+AGG + chr1_1:9323280-9323299 Msa0006440:intron 10.0%
!!! TTTATTTCTTTTCATTTTTA+TGG + chr1_1:9326605-9326624 Msa0006440:intron 10.0%
!!! TTAAATTACATTTTTATAAC+TGG - chr1_1:9327931-9327950 None:intergenic 10.0%
!!! AAAATAATTAAATTGTTTCT+TGG - chr1_1:9328398-9328417 None:intergenic 10.0%
!!! AAACAATTTAATTATTTTCA+GGG + chr1_1:9328400-9328419 Msa0006440:intron 10.0%
!!! CATTTTTTTTGAACTATTTT+TGG + chr1_1:9323163-9323182 Msa0006440:intron 15.0%
!! AATATATATTCTTTCAATCA+AGG + chr1_1:9323650-9323669 Msa0006440:intron 15.0%
!!! TGTTTTTTATTTTTATATCG+TGG + chr1_1:9324237-9324256 Msa0006440:intron 15.0%
!!! AATTATTTTATCTTCTGTTA+TGG - chr1_1:9324392-9324411 None:intergenic 15.0%
!!! ATTCAATTTTAAATCAAACT+CGG - chr1_1:9324855-9324874 None:intergenic 15.0%
!!! TATGAATTTTTAAATTTGGT+AGG - chr1_1:9325641-9325660 None:intergenic 15.0%
!! AGCACATTAAATAAATTATA+TGG + chr1_1:9325753-9325772 Msa0006440:intron 15.0%
!! ATTAAATAAATTATATGGTG+TGG + chr1_1:9325758-9325777 Msa0006440:intron 15.0%
!! AGAACAGTAAATAAATTATA+TGG + chr1_1:9325782-9325801 Msa0006440:intron 15.0%
!! AGAATTAAAAGAATAGAAAT+TGG - chr1_1:9326856-9326875 None:intergenic 15.0%
!!! TATTATTTGAAAACCAATTT+TGG + chr1_1:9327406-9327425 Msa0006440:intron 15.0%
!! ACATAAAATAGTTATACATA+AGG - chr1_1:9327772-9327791 None:intergenic 15.0%
!!! TGTATAACTATTTTATGTAT+TGG + chr1_1:9327774-9327793 Msa0006440:intron 15.0%
!!! GAAACAATTTAATTATTTTC+AGG + chr1_1:9328399-9328418 Msa0006440:intron 15.0%
!! TAATTAATTTCCCTAAGAAA+TGG + chr1_1:9323186-9323205 Msa0006440:intron 20.0%
!!! ATAAGAAACATTTCCTTTTT+TGG - chr1_1:9323214-9323233 None:intergenic 20.0%
!!! TTTTTATTTTTATATCGTGG+TGG + chr1_1:9324240-9324259 Msa0006440:intron 20.0%
!!! ATGATTTGGATTTTGATTTT+TGG + chr1_1:9324274-9324293 Msa0006440:intron 20.0%
!! AATAAGCTTAAAACAACTTA+TGG + chr1_1:9324465-9324484 Msa0006440:intron 20.0%
!! ACAATAATAGTTAAAGATTG+TGG + chr1_1:9324894-9324913 Msa0006440:intron 20.0%
!! ATAAAAACTTCTCTTCATTA+TGG + chr1_1:9324985-9325004 Msa0006440:intron 20.0%
!! TAAAAACTTCTCTTCATTAT+GGG + chr1_1:9324986-9325005 Msa0006440:intron 20.0%
!!! TTAGTTTTGCATTTTGAAAA+TGG + chr1_1:9325277-9325296 Msa0006440:intron 20.0%
!! AGTAAATAAATTATATGGTG+TGG + chr1_1:9325787-9325806 Msa0006440:intron 20.0%
!! ATAAATAATTAACCTGATAG+AGG + chr1_1:9325910-9325929 Msa0006440:intron 20.0%
!! TAAATAATTAACCTGATAGA+GGG + chr1_1:9325911-9325930 Msa0006440:intron 20.0%
!! AAAACCACTATCAATAATTA+GGG - chr1_1:9326006-9326025 None:intergenic 20.0%
!! TAAAACCACTATCAATAATT+AGG - chr1_1:9326007-9326026 None:intergenic 20.0%
!!! ATTATTGATAGTGGTTTTAT+TGG + chr1_1:9326008-9326027 Msa0006440:intron 20.0%
!!! AAAGATTTTCAGTAATCAAT+GGG + chr1_1:9326031-9326050 Msa0006440:intron 20.0%
!! ATAAATTGAATCAATAACCA+AGG - chr1_1:9326413-9326432 None:intergenic 20.0%
!!! TTATTTCTATAAATTGAGAG+TGG + chr1_1:9326478-9326497 Msa0006440:intron 20.0%
!!! TATTTCTATAAATTGAGAGT+GGG + chr1_1:9326479-9326498 Msa0006440:intron 20.0%
!! TAGATTGAGTAATATAACTA+GGG - chr1_1:9326809-9326828 None:intergenic 20.0%
!! ATAGATTGAGTAATATAACT+AGG - chr1_1:9326810-9326829 None:intergenic 20.0%
!! TAAATACCTTATAAAAGGTA+AGG - chr1_1:9328252-9328271 None:intergenic 20.0%
!!! AAGTTTTTCAAATGCTAATT+TGG + chr1_1:9328344-9328363 Msa0006440:intron 20.0%
!!! TTGGTCAATTACATTAATTT+TGG + chr1_1:9328363-9328382 Msa0006440:intron 20.0%
!! AATATGTAATTACAGAATCT+TGG - chr1_1:9329093-9329112 None:intergenic 20.0%
!! AAAATATTTAGATCCACAAA+AGG - chr1_1:9329358-9329377 None:intergenic 20.0%
!! AAACATGGAAAAATTGAAAA+GGG - chr1_1:9329411-9329430 None:intergenic 20.0%
!! ATATTTCAACTATTTACGAT+GGG - chr1_1:9329487-9329506 None:intergenic 20.0%
!! CAACAAAAATTGAATATTAC+CGG - chr1_1:9330631-9330650 None:intergenic 20.0%
!! CAATGATATCATAACATTTA+AGG - chr1_1:9330960-9330979 None:intergenic 20.0%
!! AGGTGTGTTTTCTTATAAAT+TGG + chr1_1:9322636-9322655 Msa0006440:five_prime_UTR 25.0%
!! GGTGTGTTTTCTTATAAATT+GGG + chr1_1:9322637-9322656 Msa0006440:five_prime_UTR 25.0%
!!! TTTTTTGGATCCATTTCTTA+GGG - chr1_1:9323199-9323218 None:intergenic 25.0%
! AAACATTATTAGGTTCTCTT+TGG + chr1_1:9323290-9323309 Msa0006440:intron 25.0%
! GTAGTTGATTGAATATGTAA+TGG + chr1_1:9323577-9323596 Msa0006440:intron 25.0%
! TTGATTGAATATGTAATGGT+AGG + chr1_1:9323581-9323600 Msa0006440:intron 25.0%
! ATAACTAAAATACACCCATT+TGG - chr1_1:9323792-9323811 None:intergenic 25.0%
! ATAAGCTCATGAAAAAAAGA+CGG + chr1_1:9323841-9323860 Msa0006440:intron 25.0%
! TTTAGTGTTATATTTGGGTA+AGG - chr1_1:9325238-9325257 None:intergenic 25.0%
! CAGTGTTTAGTGTTATATTT+GGG - chr1_1:9325243-9325262 None:intergenic 25.0%
!!! TTTTGCATTTTGAAAATGGA+GGG + chr1_1:9325281-9325300 Msa0006440:intron 25.0%
!! AGGATAAAGATTTTAGACAT+TGG - chr1_1:9325482-9325501 None:intergenic 25.0%
!! GTTTTTACTCAAGAATTCAA+GGG + chr1_1:9325589-9325608 Msa0006440:intron 25.0%
! GAATTGAGTGCTATAAATAT+GGG + chr1_1:9325933-9325952 Msa0006440:intron 25.0%
! TATAAATATGGGAATTGCAT+TGG + chr1_1:9325944-9325963 Msa0006440:intron 25.0%
! ATTTCCCTAATTATTGATAG+TGG + chr1_1:9325999-9326018 Msa0006440:intron 25.0%
!! GAAAGATTTTCAGTAATCAA+TGG + chr1_1:9326030-9326049 Msa0006440:intron 25.0%
!!! AAACGTTTTTTTGCGAATAA+AGG - chr1_1:9326120-9326139 None:intergenic 25.0%
!!! AAAAACGTTTTGAATGAATC+CGG + chr1_1:9326130-9326149 Msa0006440:intron 25.0%
!! TCAATTTATAGACAGTTTTC+TGG + chr1_1:9326424-9326443 Msa0006440:intron 25.0%
! TTGAATTACGTATTCACAAT+GGG - chr1_1:9327013-9327032 None:intergenic 25.0%
! ATTGAATTACGTATTCACAA+TGG - chr1_1:9327014-9327033 None:intergenic 25.0%
! ATTCAAGATGATAGAGATTT+GGG - chr1_1:9327179-9327198 None:intergenic 25.0%
! TATTCAAGATGATAGAGATT+TGG - chr1_1:9327180-9327199 None:intergenic 25.0%
! GTGAAATGCAAAATTCATAA+TGG - chr1_1:9327219-9327238 None:intergenic 25.0%
!!! TATACTAGTTTGTTATCAAG+AGG + chr1_1:9327349-9327368 Msa0006440:intron 25.0%
!! TTTGTTATCAAGAGGAATTT+AGG + chr1_1:9327357-9327376 Msa0006440:intron 25.0%
! TATATTTGCAGCAAGAAAAT+AGG + chr1_1:9327620-9327639 Msa0006440:CDS 25.0%
! CACATTATGAATAGAATGAT+CGG - chr1_1:9327722-9327741 None:intergenic 25.0%
!!! TATACATAAGGAGTTTTGAT+GGG - chr1_1:9327760-9327779 None:intergenic 25.0%
!!! TTATACATAAGGAGTTTTGA+TGG - chr1_1:9327761-9327780 None:intergenic 25.0%
!!! ACCTTTTATAAGGTATTTAC+TGG + chr1_1:9328253-9328272 Msa0006440:intron 25.0%
!!! CCTTTTATAAGGTATTTACT+GGG + chr1_1:9328254-9328273 Msa0006440:intron 25.0%
!! TTGAAAAACTTGACTTGAAA+GGG - chr1_1:9328335-9328354 None:intergenic 25.0%
!! TTTGAAAAACTTGACTTGAA+AGG - chr1_1:9328336-9328355 None:intergenic 25.0%
! TCTTGCTTCTTGATATTATT+TGG - chr1_1:9328551-9328570 None:intergenic 25.0%
!!! CTTTTGAAGAATTTGGTAAA+AGG - chr1_1:9328709-9328728 None:intergenic 25.0%
!!! GTAATCACTTTTGAAGAATT+TGG - chr1_1:9328716-9328735 None:intergenic 25.0%
! AACATGGAAAAATTGAAAAG+GGG - chr1_1:9329410-9329429 None:intergenic 25.0%
! GAAACATGGAAAAATTGAAA+AGG - chr1_1:9329412-9329431 None:intergenic 25.0%
! CATATTTCAACTATTTACGA+TGG - chr1_1:9329488-9329507 None:intergenic 25.0%
! TAGTTGAAATATGTTTGACA+AGG + chr1_1:9329495-9329514 Msa0006440:intron 25.0%
!!! GCATTTATTGATTTGTCATT+TGG + chr1_1:9329576-9329595 Msa0006440:intron 25.0%
!!! TTTATTGATTTGTCATTTGG+TGG + chr1_1:9329579-9329598 Msa0006440:intron 25.0%
!! TGTGCTTTTCTTTTTATATC+TGG + chr1_1:9329637-9329656 Msa0006440:intron 25.0%
!! TCTTTTTATATCTGGTACTA+AGG + chr1_1:9329645-9329664 Msa0006440:intron 25.0%
! ATTTCAAATACAACATCAGT+TGG - chr1_1:9329976-9329995 None:intergenic 25.0%
! TAAAAAGGAATCATCAAGAA+CGG - chr1_1:9330145-9330164 None:intergenic 25.0%
!! TTGTATCCTTTGTGTTATTA+CGG - chr1_1:9330527-9330546 None:intergenic 25.0%
!!! CCTGAAAAAAGAATTGATTT+TGG - chr1_1:9330706-9330725 None:intergenic 25.0%
!!! CCAAAATCAATTCTTTTTTC+AGG + chr1_1:9330703-9330722 Msa0006440:intron 25.0%
! CTAAAATGTGTAGATTTCAT+TGG + chr1_1:9330984-9331003 Msa0006440:three_prime_UTR 25.0%
! TGTTTTCTTAATAAGGGTGA+AGG + chr1_1:9322616-9322635 Msa0006440:five_prime_UTR 30.0%
TTTCTTATAAATTGGGACGT+AGG + chr1_1:9322644-9322663 Msa0006440:five_prime_UTR 30.0%
TTCTTATAAATTGGGACGTA+GGG + chr1_1:9322645-9322664 Msa0006440:five_prime_UTR 30.0%
! GGGAGTATATTTATATATGC+CGG + chr1_1:9322665-9322684 Msa0006440:five_prime_UTR 30.0%
!!! CTTTTTTGGATCCATTTCTT+AGG - chr1_1:9323200-9323219 None:intergenic 30.0%
CTAAGAAATGGATCCAAAAA+AGG + chr1_1:9323198-9323217 Msa0006440:intron 30.0%
! TATCAGCTAGCTTATCAATA+AGG - chr1_1:9323343-9323362 None:intergenic 30.0%
AAAAATTCCGAACTTGAATC+TGG + chr1_1:9323461-9323480 Msa0006440:intron 30.0%
AAAATTCCGAACTTGAATCT+GGG + chr1_1:9323462-9323481 Msa0006440:intron 30.0%
GTAATGGTAGGTAAAATTAG+TGG + chr1_1:9323593-9323612 Msa0006440:intron 30.0%
ATGACTAAAAAAGACTCGTT+TGG - chr1_1:9323870-9323889 None:intergenic 30.0%
! TGTCAATCAGATATGCTTTT+AGG + chr1_1:9323932-9323951 Msa0006440:intron 30.0%
!!! TTGTTTTTTGTTGTAGCTTG+AGG + chr1_1:9323973-9323992 Msa0006440:intron 30.0%
!! TGGTGTTATGAATCATGATT+TGG + chr1_1:9324260-9324279 Msa0006440:intron 30.0%
!! ATTTTTAGAAGCTCTCCAAA+TGG - chr1_1:9324448-9324467 None:intergenic 30.0%
CAACTTATAGAAACACCTTA+TGG - chr1_1:9324496-9324515 None:intergenic 30.0%
TAAGAATTTGAGAGACTGTT+TGG - chr1_1:9324521-9324540 None:intergenic 30.0%
TCAAATAAGCCAATTCAAAC+AGG + chr1_1:9324557-9324576 Msa0006440:intron 30.0%
TCAAATTGAACTTTGCAACA+AGG - chr1_1:9324583-9324602 None:intergenic 30.0%
TATTCTACTGCATTAGAACT+TGG + chr1_1:9324730-9324749 Msa0006440:CDS 30.0%
! AATGAAAGCATGAAAAGAAG+AGG - chr1_1:9324832-9324851 None:intergenic 30.0%
! TTTTCCTCTATTGTCAAATG+TGG + chr1_1:9325077-9325096 Msa0006440:intron 30.0%
AAAACCACATTTGACAATAG+AGG - chr1_1:9325084-9325103 None:intergenic 30.0%
TTAGTAAATATCCAGATCTG+TGG + chr1_1:9325102-9325121 Msa0006440:intron 30.0%
GCAGTGTTTAGTGTTATATT+TGG - chr1_1:9325244-9325263 None:intergenic 30.0%
!! GTTTTGCATTTTGAAAATGG+AGG + chr1_1:9325280-9325299 Msa0006440:intron 30.0%
!! TTTGCATTTTGAAAATGGAG+GGG + chr1_1:9325282-9325301 Msa0006440:intron 30.0%
AGACACATAAAAAACCACTA+CGG - chr1_1:9325322-9325341 None:intergenic 30.0%
!! ACTAGAGTATCGACAATTTA+AGG + chr1_1:9325454-9325473 Msa0006440:intron 30.0%
TTAATTGGAGCACAAATTAG+AGG - chr1_1:9325502-9325521 None:intergenic 30.0%
GGAAAGATGATATGTTCATA+CGG + chr1_1:9325544-9325563 Msa0006440:intron 30.0%
! CGTTTTTACTCAAGAATTCA+AGG + chr1_1:9325588-9325607 Msa0006440:intron 30.0%
GGGTTGAATATAAAATAGAG+TGG + chr1_1:9325833-9325852 Msa0006440:intron 30.0%
ATTGTAGTATGCAGAACTAA+TGG + chr1_1:9325873-9325892 Msa0006440:intron 30.0%
TTGTAGTATGCAGAACTAAT+GGG + chr1_1:9325874-9325893 Msa0006440:intron 30.0%
GGAATTGAGTGCTATAAATA+TGG + chr1_1:9325932-9325951 Msa0006440:intron 30.0%
! ACTCTTCTAATTCTCTGAAA+CGG - chr1_1:9326075-9326094 None:intergenic 30.0%
!! AAAACGTTTTGAATGAATCC+GGG + chr1_1:9326131-9326150 Msa0006440:intron 30.0%
! TTCATTTTACAGGACAATCA+TGG - chr1_1:9326553-9326572 None:intergenic 30.0%
! TTCAAGTTCAAAAGTTATGG+GGG - chr1_1:9326909-9326928 None:intergenic 30.0%
! CTTCAAGTTCAAAAGTTATG+GGG - chr1_1:9326910-9326929 None:intergenic 30.0%
! GCTTCAAGTTCAAAAGTTAT+GGG - chr1_1:9326911-9326930 None:intergenic 30.0%
! AGCTTCAAGTTCAAAAGTTA+TGG - chr1_1:9326912-9326931 None:intergenic 30.0%
!! AAGCTACTTTGAAATTAGCA+AGG + chr1_1:9326927-9326946 Msa0006440:CDS 30.0%
AGTAGAGAATTTAAGTGACT+TGG - chr1_1:9327110-9327129 None:intergenic 30.0%
TGAGAGAATTTAGCCAAAAT+TGG - chr1_1:9327422-9327441 None:intergenic 30.0%
ATTGAAATAGCTCGTTTGTA+TGG + chr1_1:9327544-9327563 Msa0006440:CDS 30.0%
! AATTAGTGCAATGCAAGTTT+TGG + chr1_1:9327651-9327670 Msa0006440:CDS 30.0%
! TTGAACATGATAAGCTTTTG+TGG - chr1_1:9327683-9327702 None:intergenic 30.0%
TCATGTTCAAAGTAGATCAT+CGG + chr1_1:9327693-9327712 Msa0006440:CDS 30.0%
!! GCTTATCTCTTATTTGCTTT+TGG + chr1_1:9327874-9327893 Msa0006440:intron 30.0%
! TGATATATTTTCCCATCATC+AGG - chr1_1:9327993-9328012 None:intergenic 30.0%
TTTCTCTTAATACAACCATC+TGG - chr1_1:9328058-9328077 None:intergenic 30.0%
ATACCTTATAAAAGGTAAGG+CGG - chr1_1:9328249-9328268 None:intergenic 30.0%
CCCAGTAAATACCTTATAAA+AGG - chr1_1:9328257-9328276 None:intergenic 30.0%
TAACAATGTCCATTTGTGTT+GGG - chr1_1:9328445-9328464 None:intergenic 30.0%
TTAACAATGTCCATTTGTGT+TGG - chr1_1:9328446-9328465 None:intergenic 30.0%
ATCAAAATTTCCTGAATGCA+CGG - chr1_1:9328666-9328685 None:intergenic 30.0%
TCAAAAGTGATTACCTTATC+TGG + chr1_1:9328722-9328741 Msa0006440:CDS 30.0%
TACTGAACACCTATTTAAAG+AGG + chr1_1:9328808-9328827 Msa0006440:CDS 30.0%
GATTGTCAACCTCTTTAAAT+AGG - chr1_1:9328820-9328839 None:intergenic 30.0%
ACAGATACATTCTTCAACTT+TGG - chr1_1:9328902-9328921 None:intergenic 30.0%
TCTGAATGTATTCCAATGTA+AGG - chr1_1:9329329-9329348 None:intergenic 30.0%
! ATTCAGATCAAAACCTTTTG+TGG + chr1_1:9329342-9329361 Msa0006440:intron 30.0%
ACATGGAAAAATTGAAAAGG+GGG - chr1_1:9329409-9329428 None:intergenic 30.0%
AATGACACTGATCTAACAAA+AGG - chr1_1:9329442-9329461 None:intergenic 30.0%
TAGTGAAAATCTTCCTAAGT+TGG + chr1_1:9329825-9329844 Msa0006440:CDS 30.0%
GATGTGAATAATAGTTCCAA+TGG + chr1_1:9329850-9329869 Msa0006440:CDS 30.0%
TGTTAACTCAGAGTCAAAAA+TGG + chr1_1:9329879-9329898 Msa0006440:CDS 30.0%
! TCTCTATCAATTCTTGTTTC+AGG - chr1_1:9330078-9330097 None:intergenic 30.0%
! GGTAATTTAAAATGCTCAAG+AGG - chr1_1:9330123-9330142 None:intergenic 30.0%
AAAAAGGAATCATCAAGAAC+GGG - chr1_1:9330144-9330163 None:intergenic 30.0%
! TGATGATTCCTTTTTATCGA+AGG + chr1_1:9330149-9330168 Msa0006440:CDS 30.0%
ATGAGTATCCTTCGATAAAA+AGG - chr1_1:9330160-9330179 None:intergenic 30.0%
! TATCTAGGATTAAGGTTCAA+TGG + chr1_1:9330265-9330284 Msa0006440:CDS 30.0%
! TTTTTGTTGCTCTCTGTAAT+TGG + chr1_1:9330642-9330661 Msa0006440:intron 30.0%
GTAATTGGTATGCATTCATA+TGG + chr1_1:9330657-9330676 Msa0006440:intron 30.0%
!! AATGATTGATTTGCTGAAGT+GGG - chr1_1:9330759-9330778 None:intergenic 30.0%
! AATTTGTTCATGTATTCCCA+AGG - chr1_1:9330933-9330952 None:intergenic 30.0%
TCATTAAGATCCAACGAAGA+AGG - chr1_1:9323048-9323067 None:intergenic 35.0%
! GTTTTACCCTAATGATTCTC+AGG + chr1_1:9323134-9323153 Msa0006440:CDS 35.0%
TCAGTACCTGAGAATCATTA+GGG - chr1_1:9323143-9323162 None:intergenic 35.0%
GATAGCCAATAGGAAAGAAA+AGG + chr1_1:9323359-9323378 Msa0006440:intron 35.0%
AATCAACTACCTTATTCGCT+AGG - chr1_1:9323567-9323586 None:intergenic 35.0%
ATAAACTGCTGAGAAGATGA+CGG + chr1_1:9323763-9323782 Msa0006440:intron 35.0%
!! TTTTTGTTGTAGCTTGAGGA+TGG + chr1_1:9323977-9323996 Msa0006440:intron 35.0%
! TTTGAAGTTATTTCCACCTG+CGG + chr1_1:9324018-9324037 Msa0006440:CDS 35.0%
!!! GATTTTTGGTTTCGTGTTCT+TGG + chr1_1:9324288-9324307 Msa0006440:intron 35.0%
!! AGCTGTTTTCATAAGCCATT+TGG + chr1_1:9324430-9324449 Msa0006440:intron 35.0%
TATAGAAACACCTTATGGCA+TGG - chr1_1:9324491-9324510 None:intergenic 35.0%
! TGATCTTTTGTGTGTTTGTG+TGG + chr1_1:9324604-9324623 Msa0006440:intron 35.0%
AGGTTATCAAGGCCAAAAAA+CGG + chr1_1:9324632-9324651 Msa0006440:intron 35.0%
TAATGAGCATTAGCATCAAC+AGG - chr1_1:9324712-9324731 None:intergenic 35.0%
AGGAAAAAAAGATACCAGCA+AGG - chr1_1:9324812-9324831 None:intergenic 35.0%
! GTTAAAGATTGTGGACTGTA+TGG + chr1_1:9324903-9324922 Msa0006440:intron 35.0%
AATGAAAAACACAACGCATG+CGG - chr1_1:9324938-9324957 None:intergenic 35.0%
! GTTGTGTTTTTCATTGGAAC+CGG + chr1_1:9324943-9324962 Msa0006440:intron 35.0%
TTTGGATGCAATCAGAGATA+GGG - chr1_1:9325021-9325040 None:intergenic 35.0%
TGGTTACTCACAATCAAGAT+TGG + chr1_1:9325127-9325146 Msa0006440:intron 35.0%
! GGGTAAGGATTTTACAATTG+TGG - chr1_1:9325223-9325242 None:intergenic 35.0%
GCTCCAATTAAGCTAGATTT+CGG + chr1_1:9325511-9325530 Msa0006440:intron 35.0%
! GAACCGAAATCTAGCTTAAT+TGG - chr1_1:9325517-9325536 None:intergenic 35.0%
CTAGATTTCGGTTCTTAGAA+GGG + chr1_1:9325523-9325542 Msa0006440:intron 35.0%
AGAACAGAACAAAGGGAAAA+GGG + chr1_1:9325813-9325832 Msa0006440:intron 35.0%
TGTAGTATGCAGAACTAATG+GGG + chr1_1:9325875-9325894 Msa0006440:intron 35.0%
! ATATGGGAATTGCATTGGTA+AGG + chr1_1:9325949-9325968 Msa0006440:intron 35.0%
TGGTAAGGTTCCATGATTTA+TGG + chr1_1:9325964-9325983 Msa0006440:intron 35.0%
GGTAAGGTTCCATGATTTAT+GGG + chr1_1:9325965-9325984 Msa0006440:intron 35.0%
TCCATGATTTATGGGTGTAT+TGG + chr1_1:9325973-9325992 Msa0006440:intron 35.0%
TCCAATACACCCATAAATCA+TGG - chr1_1:9325977-9325996 None:intergenic 35.0%
!! AAACGTTTTGAATGAATCCG+GGG + chr1_1:9326132-9326151 Msa0006440:intron 35.0%
! AGATTTGAGATCCAGAAATC+CGG - chr1_1:9326229-9326248 None:intergenic 35.0%
AGTCACAAGATAATACTCAG+CGG + chr1_1:9326716-9326735 Msa0006440:CDS 35.0%
GTCAAACAATAAGTAGTGTG+GGG - chr1_1:9327139-9327158 None:intergenic 35.0%
GGTCAAACAATAAGTAGTGT+GGG - chr1_1:9327140-9327159 None:intergenic 35.0%
AGGTCAAACAATAAGTAGTG+TGG - chr1_1:9327141-9327160 None:intergenic 35.0%
ACACTACTTATTGTTTGACC+TGG + chr1_1:9327140-9327159 Msa0006440:intron 35.0%
CACTACTTATTGTTTGACCT+GGG + chr1_1:9327141-9327160 Msa0006440:intron 35.0%
ATAGAGATTTGGGTACTATG+GGG - chr1_1:9327169-9327188 None:intergenic 35.0%
GATAGAGATTTGGGTACTAT+GGG - chr1_1:9327170-9327189 None:intergenic 35.0%
TGATAGAGATTTGGGTACTA+TGG - chr1_1:9327171-9327190 None:intergenic 35.0%
GCATCATTCAATTGAAATGC+TGG - chr1_1:9327255-9327274 None:intergenic 35.0%
TCCTGTTTACTCAAAACAGT+TGG + chr1_1:9327299-9327318 Msa0006440:intron 35.0%
!! ACCAACTGTTTTGAGTAAAC+AGG - chr1_1:9327303-9327322 None:intergenic 35.0%
GCTAAATTCTCTCAATCAAC+AGG + chr1_1:9327428-9327447 Msa0006440:intron 35.0%
GATCAGATAAACCTGATGAT+GGG + chr1_1:9327979-9327998 Msa0006440:CDS 35.0%
CAAACAATGAGACAACTGAT+TGG - chr1_1:9328016-9328035 None:intergenic 35.0%
TCTCATTGTTTGAGTCTCAA+TGG + chr1_1:9328024-9328043 Msa0006440:CDS 35.0%
TCTTAATACAACCATCTGGA+TGG - chr1_1:9328054-9328073 None:intergenic 35.0%
AGGAGTTATTAGAGGATAGT+AGG - chr1_1:9328150-9328169 None:intergenic 35.0%
TACCTTATAAAAGGTAAGGC+GGG - chr1_1:9328248-9328267 None:intergenic 35.0%
GAAGATGAAGGAATATGACT+TGG - chr1_1:9328313-9328332 None:intergenic 35.0%
TGAATGGCGTGTAAATGAAA+GGG - chr1_1:9328517-9328536 None:intergenic 35.0%
ATTTACACGCCATTCAGTAA+AGG + chr1_1:9328521-9328540 Msa0006440:CDS 35.0%
TTTGGATCTCCTTTACTGAA+TGG - chr1_1:9328533-9328552 None:intergenic 35.0%
ACTCTTAAATCAAAGCCACA+CGG - chr1_1:9328626-9328645 None:intergenic 35.0%
ACAACATGTGATATCAGCAA+TGG - chr1_1:9328953-9328972 None:intergenic 35.0%
TTGCTGATATCACATGTTGT+TGG + chr1_1:9328953-9328972 Msa0006440:CDS 35.0%
!! TACAGAATCTTGGTTTTTCC+CGG - chr1_1:9329083-9329102 None:intergenic 35.0%
CGTAGTGTATCAATAGTGAT+GGG - chr1_1:9329246-9329265 None:intergenic 35.0%
AATTTAGAAGTTCAGTCTGC+AGG + chr1_1:9329303-9329322 Msa0006440:intron 35.0%
! AGATTTTCACTAACATGAGC+AGG - chr1_1:9329817-9329836 None:intergenic 35.0%
TTATTCACATCGTCCAACTT+AGG - chr1_1:9329841-9329860 None:intergenic 35.0%
GTGAATAATAGTTCCAATGG+AGG + chr1_1:9329853-9329872 Msa0006440:CDS 35.0%
AGAGTCAAAAATGGACAGAT+TGG + chr1_1:9329888-9329907 Msa0006440:CDS 35.0%
GTGAAAATAGATCCTTTCAG+AGG + chr1_1:9329910-9329929 Msa0006440:CDS 35.0%
AATCATTTAGCTGATCAGGA+TGG + chr1_1:9330036-9330055 Msa0006440:CDS 35.0%
! GAACCTTGTATCTAGGATTA+AGG + chr1_1:9330257-9330276 Msa0006440:CDS 35.0%
GAACCTTAATCCTAGATACA+AGG - chr1_1:9330263-9330282 None:intergenic 35.0%
! CTCTGGAGAGTTAAATATCA+AGG + chr1_1:9330305-9330324 Msa0006440:CDS 35.0%
AAATATCAAGGATGCTATCC+AGG + chr1_1:9330317-9330336 Msa0006440:CDS 35.0%
!! ATGATTGATTTGCTGAAGTG+GGG - chr1_1:9330758-9330777 None:intergenic 35.0%
!! GAATGATTGATTTGCTGAAG+TGG - chr1_1:9330760-9330779 None:intergenic 35.0%
ATGATGCAAATGACATCCTT+CGG + chr1_1:9330839-9330858 Msa0006440:CDS 35.0%
TGATGCAGTTAAGTTACATG+CGG + chr1_1:9331018-9331037 Msa0006440:three_prime_UTR 35.0%
CTCATCATAGTACAATTCAG+AGG - chr1_1:9331072-9331091 None:intergenic 35.0%
AAGTAACTAACCAACCACTC+CGG + chr1_1:9322710-9322729 Msa0006440:five_prime_UTR 40.0%
!! TATGCTTACTTCTGGTTCCA+TGG - chr1_1:9322746-9322765 None:intergenic 40.0%
GAACCAGAAGTAAGCATAGA+AGG + chr1_1:9322748-9322767 Msa0006440:CDS 40.0%
GATTTGTCCGATTGGGATTA+CGG - chr1_1:9322794-9322813 None:intergenic 40.0%
TGCGATTGAAAATCTTCCCA+GGG - chr1_1:9322988-9323007 None:intergenic 40.0%
ATGCGATTGAAAATCTTCCC+AGG - chr1_1:9322989-9323008 None:intergenic 40.0%
! GGGAAGATTTTCAATCGCAT+CGG + chr1_1:9322989-9323008 Msa0006440:CDS 40.0%
TGTTCATTGTCCTTCTTCGT+TGG + chr1_1:9323035-9323054 Msa0006440:CDS 40.0%
! ATCCTTCTTCGCTTGTTGAT+CGG + chr1_1:9323103-9323122 Msa0006440:CDS 40.0%
GTCAGTACCTGAGAATCATT+AGG - chr1_1:9323144-9323163 None:intergenic 40.0%
TAAGCTAGCTGATAGCCAAT+AGG + chr1_1:9323349-9323368 Msa0006440:intron 40.0%
! TGCGTCCTTTTCTTTCCTAT+TGG - chr1_1:9323367-9323386 None:intergenic 40.0%
TCCCTGATTGAAGGTAATCT+CGG + chr1_1:9323540-9323559 Msa0006440:intron 40.0%
ACCGAGATTACCTTCAATCA+GGG - chr1_1:9323544-9323563 None:intergenic 40.0%
! AGAAGATGACGGTTACCAAA+TGG + chr1_1:9323774-9323793 Msa0006440:intron 40.0%
! GAAGATGACGGTTACCAAAT+GGG + chr1_1:9323775-9323794 Msa0006440:intron 40.0%
TGCTAATGGAGTTTGAGAAG+TGG + chr1_1:9324098-9324117 Msa0006440:CDS 40.0%
GCTAATGGAGTTTGAGAAGT+GGG + chr1_1:9324099-9324118 Msa0006440:CDS 40.0%
AACTATTCTCAAGACGCCTT+TGG + chr1_1:9324144-9324163 Msa0006440:CDS 40.0%
!! AGACTAGCTTGAGAATCCAA+AGG - chr1_1:9324163-9324182 None:intergenic 40.0%
!!! AGAGGAGGTGTTCATGTTTT+AGG + chr1_1:9324189-9324208 Msa0006440:intron 40.0%
! GCATGCGTTGTGTTTTTCAT+TGG + chr1_1:9324937-9324956 Msa0006440:intron 40.0%
CTTTGGATGCAATCAGAGAT+AGG - chr1_1:9325022-9325041 None:intergenic 40.0%
TTGCATCCAAAGTGTGTGTT+TGG + chr1_1:9325030-9325049 Msa0006440:intron 40.0%
TCCAAAGTGTGTGTTTGGTT+TGG + chr1_1:9325035-9325054 Msa0006440:intron 40.0%
TCCAAACCAAACACACACTT+TGG - chr1_1:9325039-9325058 None:intergenic 40.0%
!! GTGTGTTTGGTTTGGATTCA+TGG + chr1_1:9325043-9325062 Msa0006440:intron 40.0%
AAATATCCAGATCTGTGGTG+TGG + chr1_1:9325107-9325126 Msa0006440:intron 40.0%
!! TTGGTCTTGCTTGCAAACTT+TGG + chr1_1:9325146-9325165 Msa0006440:intron 40.0%
!! CACTAAACACTGCTTTTGTG+TGG + chr1_1:9325251-9325270 Msa0006440:intron 40.0%
GCTAGATTTCGGTTCTTAGA+AGG + chr1_1:9325522-9325541 Msa0006440:intron 40.0%
! AATTCAAGGGCATGAGGTTT+AGG + chr1_1:9325602-9325621 Msa0006440:intron 40.0%
TGTGGTTGAGAACAGAACAA+AGG + chr1_1:9325805-9325824 Msa0006440:intron 40.0%
GTGGTTGAGAACAGAACAAA+GGG + chr1_1:9325806-9325825 Msa0006440:intron 40.0%
GAGAACAGAACAAAGGGAAA+AGG + chr1_1:9325812-9325831 Msa0006440:intron 40.0%
GAGTGGCTATGAAAGAATGA+AGG + chr1_1:9325850-9325869 Msa0006440:intron 40.0%
GTAGTATGCAGAACTAATGG+GGG + chr1_1:9325876-9325895 Msa0006440:intron 40.0%
! TTGCTAAAGACTGGGTTTTC+GGG - chr1_1:9326169-9326188 None:intergenic 40.0%
! CTTGCTAAAGACTGGGTTTT+CGG - chr1_1:9326170-9326189 None:intergenic 40.0%
! CGTTTCACTTGCTAAAGACT+GGG - chr1_1:9326177-9326196 None:intergenic 40.0%
! GATTTGAGATCCAGAAATCC+GGG - chr1_1:9326228-9326247 None:intergenic 40.0%
!! CAAGAGCGTGTTCATTTTAC+AGG - chr1_1:9326563-9326582 None:intergenic 40.0%
ATGGTTTCAGATTGACCGTA+TGG + chr1_1:9326624-9326643 Msa0006440:intron 40.0%
TGGTTTCAGATTGACCGTAT+GGG + chr1_1:9326625-9326644 Msa0006440:intron 40.0%
CGGTTAATGAAGTCTCAAAC+CGG - chr1_1:9326753-9326772 None:intergenic 40.0%
GCAATAGGCATCAGAGAAAT+CGG - chr1_1:9326773-9326792 None:intergenic 40.0%
! GGAAAGCACAGTTAAGCAAT+AGG - chr1_1:9326788-9326807 None:intergenic 40.0%
AATTAGCAAGGTTCCTTTGC+AGG + chr1_1:9326939-9326958 Msa0006440:CDS 40.0%
!!! CCTTGATGGCTAGCTTTTTA+GGG - chr1_1:9327080-9327099 None:intergenic 40.0%
CCTAAAAAGCTAGCCATCAA+GGG + chr1_1:9327078-9327097 Msa0006440:intron 40.0%
CTAAAAAGCTAGCCATCAAG+GGG + chr1_1:9327079-9327098 Msa0006440:intron 40.0%
TAAAAAGCTAGCCATCAAGG+GGG + chr1_1:9327080-9327099 Msa0006440:intron 40.0%
CATCTTGAATACATGCACTG+TGG + chr1_1:9327189-9327208 Msa0006440:intron 40.0%
TTTGCAGCAAGAAAATAGGC+TGG + chr1_1:9327624-9327643 Msa0006440:CDS 40.0%
GGATCAGATAAACCTGATGA+TGG + chr1_1:9327978-9327997 Msa0006440:CDS 40.0%
TATCCTCTAATAACTCCTGC+TGG + chr1_1:9328152-9328171 Msa0006440:CDS 40.0%
ATCCTCTAATAACTCCTGCT+GGG + chr1_1:9328153-9328172 Msa0006440:CDS 40.0%
TATAAAAGGTAAGGCGGGAT+CGG - chr1_1:9328243-9328262 None:intergenic 40.0%
! ATCCCGCCTTACCTTTTATA+AGG + chr1_1:9328243-9328262 Msa0006440:CDS 40.0%
TGACTTGAAAGGGAAGATGA+AGG - chr1_1:9328325-9328344 None:intergenic 40.0%
CTGAATGGCGTGTAAATGAA+AGG - chr1_1:9328518-9328537 None:intergenic 40.0%
! TCAAGAAGCAAGAGCTTGTT+TGG + chr1_1:9328558-9328577 Msa0006440:CDS 40.0%
! CAAGAGCTTGTTTGGATTGT+TGG + chr1_1:9328566-9328585 Msa0006440:CDS 40.0%
AGTTCCACTAAAACCTGGAT+CGG - chr1_1:9328596-9328615 None:intergenic 40.0%
CTCTTAAATCAAAGCCACAC+GGG - chr1_1:9328625-9328644 None:intergenic 40.0%
ATATATCTGTCCGTGCATTC+AGG + chr1_1:9328653-9328672 Msa0006440:CDS 40.0%
TGATGTTGGAATGCCAGATA+AGG - chr1_1:9328738-9328757 None:intergenic 40.0%
AGGTTGACAATCTGCTTCTT+GGG + chr1_1:9328828-9328847 Msa0006440:CDS 40.0%
TGTGATATCAGCAATGGAAG+TGG - chr1_1:9328947-9328966 None:intergenic 40.0%
CTGATATCACATGTTGTTGG+AGG + chr1_1:9328956-9328975 Msa0006440:CDS 40.0%
TTCGCCTTCGTACAAAATGA+TGG - chr1_1:9328990-9329009 None:intergenic 40.0%
GAAATATGTGCCTGCTCAAT+TGG - chr1_1:9329055-9329074 None:intergenic 40.0%
GCGTAGTGTATCAATAGTGA+TGG - chr1_1:9329247-9329266 None:intergenic 40.0%
TCACTATTGATACACTACGC+CGG + chr1_1:9329247-9329266 Msa0006440:CDS 40.0%
TGATGTCTTGAAGACAGTAC+CGG - chr1_1:9329269-9329288 None:intergenic 40.0%
TGATCTAACAAAAGGAGGAG+AGG - chr1_1:9329434-9329453 None:intergenic 40.0%
GACACTGATCTAACAAAAGG+AGG - chr1_1:9329439-9329458 None:intergenic 40.0%
TCAACTATTTACGATGGGAC+AGG - chr1_1:9329482-9329501 None:intergenic 40.0%
CATAAGATGGGAGCTACATA+AGG - chr1_1:9329523-9329542 None:intergenic 40.0%
CTTATGTAGCTCCCATCTTA+TGG + chr1_1:9329521-9329540 Msa0006440:intron 40.0%
GCTCTTTCCACGTTTATTTC+AGG + chr1_1:9329667-9329686 Msa0006440:intron 40.0%
TGCAAAACACAAATCTGCAG+GGG - chr1_1:9329751-9329770 None:intergenic 40.0%
CTGCAAAACACAAATCTGCA+GGG - chr1_1:9329752-9329771 None:intergenic 40.0%
! CTGCAGATTTGTGTTTTGCA+GGG + chr1_1:9329751-9329770 Msa0006440:CDS 40.0%
TGAGTTAACATGTCCTCCAT+TGG - chr1_1:9329869-9329888 None:intergenic 40.0%
AATCAACGTCTCTGTCAAAC+TGG + chr1_1:9329993-9330012 Msa0006440:CDS 40.0%
GGACAATCATTTAGCTGATC+AGG + chr1_1:9330032-9330051 Msa0006440:CDS 40.0%
GATCAGGATGGTACAGAATA+CGG + chr1_1:9330048-9330067 Msa0006440:CDS 40.0%
TTGATAGAGATTGCTCAGCA+AGG + chr1_1:9330088-9330107 Msa0006440:CDS 40.0%
TGATAGAGATTGCTCAGCAA+GGG + chr1_1:9330089-9330108 Msa0006440:CDS 40.0%
TCGAAGGATACTCATACAGA+TGG + chr1_1:9330165-9330184 Msa0006440:CDS 40.0%
CGAAGGATACTCATACAGAT+GGG + chr1_1:9330166-9330185 Msa0006440:CDS 40.0%
GATACTCATACAGATGGGAT+TGG + chr1_1:9330171-9330190 Msa0006440:CDS 40.0%
! TTGCTGCTCTTTTCAGAGAA+TGG - chr1_1:9330213-9330232 None:intergenic 40.0%
!! CTTGATGCAAGCATTGAGTT+CGG - chr1_1:9330238-9330257 None:intergenic 40.0%
GCATCAAGAACCTTGTATCT+AGG + chr1_1:9330250-9330269 Msa0006440:CDS 40.0%
GATTAAGGTTCAATGGCACT+CGG + chr1_1:9330272-9330291 Msa0006440:CDS 40.0%
ATTAAGGTTCAATGGCACTC+GGG + chr1_1:9330273-9330292 Msa0006440:CDS 40.0%
AAGCCAAATGTCAATGGATC+TGG - chr1_1:9330378-9330397 None:intergenic 40.0%
AGCTTGAAGCCAAATGTCAA+TGG - chr1_1:9330384-9330403 None:intergenic 40.0%
TGTGGTCCGTAATAACACAA+AGG + chr1_1:9330518-9330537 Msa0006440:CDS 40.0%
ATTACATGCAGAGATGTAGC+TGG + chr1_1:9330564-9330583 Msa0006440:CDS 40.0%
TTACATGCAGAGATGTAGCT+GGG + chr1_1:9330565-9330584 Msa0006440:CDS 40.0%
GTACCAAATCAACTGTTCTG+TGG + chr1_1:9330604-9330623 Msa0006440:CDS 40.0%
AAATCAACTGTTCTGTGGAC+CGG + chr1_1:9330609-9330628 Msa0006440:CDS 40.0%
TTTCAACGGTAATTTCGCTC+AGG - chr1_1:9330732-9330751 None:intergenic 40.0%
!! TGATTGATTTGCTGAAGTGG+GGG - chr1_1:9330757-9330776 None:intergenic 40.0%
TGATGCAAATGACATCCTTC+GGG + chr1_1:9330840-9330859 Msa0006440:CDS 40.0%
GATGCAGTTAAGTTACATGC+GGG + chr1_1:9331019-9331038 Msa0006440:three_prime_UTR 40.0%
CTTTCTCTCACTGTACTCAC+CGG - chr1_1:9322687-9322706 None:intergenic 45.0%
GAGCCTTCTATGCTTACTTC+TGG - chr1_1:9322754-9322773 None:intergenic 45.0%
! GATTACGGCGATTTGGATTG+TGG - chr1_1:9322779-9322798 None:intergenic 45.0%
CAAATCGCCGTAATCCCAAT+CGG + chr1_1:9322784-9322803 Msa0006440:CDS 45.0%
!! TTTCTGGTGTTCGGTGTAGA+AGG - chr1_1:9322890-9322909 None:intergenic 45.0%
!! GAAAGGGGATTTCTGGTGTT+CGG - chr1_1:9322899-9322918 None:intergenic 45.0%
GATGAGTGAAAGGGGATTTC+TGG - chr1_1:9322906-9322925 None:intergenic 45.0%
!! CCAAGGTTGATGAGTGAAAG+GGG - chr1_1:9322914-9322933 None:intergenic 45.0%
!! CCCAAGGTTGATGAGTGAAA+GGG - chr1_1:9322915-9322934 None:intergenic 45.0%
CCCTTTCACTCATCAACCTT+GGG + chr1_1:9322912-9322931 Msa0006440:CDS 45.0%
!! TCCCAAGGTTGATGAGTGAA+AGG - chr1_1:9322916-9322935 None:intergenic 45.0%
ACTCATCAACCTTGGGATTC+CGG + chr1_1:9322919-9322938 Msa0006440:CDS 45.0%
! GAGTACGAATTTGAAGCGGA+GGG - chr1_1:9322947-9322966 None:intergenic 45.0%
CTCCGCTTCAAATTCGTACT+CGG + chr1_1:9322946-9322965 Msa0006440:CDS 45.0%
TGAAAATCTTCCCAGGGACT+AGG - chr1_1:9322982-9323001 None:intergenic 45.0%
!! CGGAAAACTCTTGCTGTTGT+TGG + chr1_1:9323009-9323028 Msa0006440:CDS 45.0%
! GAATGGCCCAGATTCAAGTT+CGG - chr1_1:9323471-9323490 None:intergenic 45.0%
AGCTGTCCTACTTGATGGAA+TGG - chr1_1:9323488-9323507 None:intergenic 45.0%
TCAGTAGCTGTCCTACTTGA+TGG - chr1_1:9323493-9323512 None:intergenic 45.0%
GCACGCTAACTATGTGAATG+CGG + chr1_1:9323513-9323532 Msa0006440:intron 45.0%
GACCGAGATTACCTTCAATC+AGG - chr1_1:9323545-9323564 None:intergenic 45.0%
AATCTCGGTCCTAGCGAATA+AGG + chr1_1:9323555-9323574 Msa0006440:intron 45.0%
CTTGAGGATGGAAGTAAGAG+AGG + chr1_1:9323989-9324008 Msa0006440:intron 45.0%
AGTAGCTGCTTCGTTGCTAA+TGG + chr1_1:9324084-9324103 Msa0006440:CDS 45.0%
GTGCTTCAAGCAGAATCTTC+TGG + chr1_1:9324121-9324140 Msa0006440:CDS 45.0%
CAACTTATGGCCATGCCATA+AGG + chr1_1:9324478-9324497 Msa0006440:intron 45.0%
GCAACAAGGCCTGTTTGAAT+TGG - chr1_1:9324569-9324588 None:intergenic 45.0%
TGTGTGTTTGTGTGGAATGC+AGG + chr1_1:9324612-9324631 Msa0006440:intron 45.0%
GTGTGGAATGCAGGTTATCA+AGG + chr1_1:9324621-9324640 Msa0006440:intron 45.0%
AAGGCCAAAAAACGGAGACT+TGG + chr1_1:9324640-9324659 Msa0006440:CDS 45.0%
AGGCCAAAAAACGGAGACTT+GGG + chr1_1:9324641-9324660 Msa0006440:CDS 45.0%
! GATTGGTGATTACTGCTTGC+TGG + chr1_1:9324678-9324697 Msa0006440:CDS 45.0%
CTACTGCATTAGAACTTGGC+AGG + chr1_1:9324734-9324753 Msa0006440:CDS 45.0%
! TTAGAACTTGGCAGGTTGAC+TGG + chr1_1:9324742-9324761 Msa0006440:CDS 45.0%
! TAGAACTTGGCAGGTTGACT+GGG + chr1_1:9324743-9324762 Msa0006440:CDS 45.0%
! AGATTGTGGACTGTATGGCT+AGG + chr1_1:9324908-9324927 Msa0006440:intron 45.0%
GAACCGGTGAAGTAATGTGA+GGG + chr1_1:9324959-9324978 Msa0006440:intron 45.0%
GTACCCTCACATTACTTCAC+CGG - chr1_1:9324965-9324984 None:intergenic 45.0%
! CTCAAGAATTCAAGGGCATG+AGG + chr1_1:9325596-9325615 Msa0006440:intron 45.0%
AGCACTCAATTCCCTCTATC+AGG - chr1_1:9325925-9325944 None:intergenic 45.0%
!!! TAAAGACTGGGTTTTCGGGT+CGG - chr1_1:9326165-9326184 None:intergenic 45.0%
! GCGTTTCACTTGCTAAAGAC+TGG - chr1_1:9326178-9326197 None:intergenic 45.0%
TTAGCAAGTGAAACGCAGAC+CGG + chr1_1:9326182-9326201 Msa0006440:intron 45.0%
GGATCTCAAATCTGAATCGC+CGG + chr1_1:9326236-9326255 Msa0006440:intron 45.0%
TCGTTTGTACCGTACGATTC+CGG - chr1_1:9326258-9326277 None:intergenic 45.0%
! GAATCGGAAATTGGTGTTCG+CGG - chr1_1:9326308-9326327 None:intergenic 45.0%
CGAACACCAATTTCCGATTC+CGG + chr1_1:9326308-9326327 Msa0006440:intron 45.0%
!! GACAGTTTTCTGGCATTGCA+TGG + chr1_1:9326434-9326453 Msa0006440:intron 45.0%
! CTGAATCTTTCTGGCCCATA+CGG - chr1_1:9326642-9326661 None:intergenic 45.0%
CCTCCAAGACTGAATCTTTC+TGG - chr1_1:9326651-9326670 None:intergenic 45.0%
CCAGAAAGATTCAGTCTTGG+AGG + chr1_1:9326648-9326667 Msa0006440:CDS 45.0%
CTCAGCGGTAAGAAGTTATC+CGG + chr1_1:9326731-9326750 Msa0006440:intron 45.0%
AGCAAAGAACGTACCTGCAA+AGG - chr1_1:9326955-9326974 None:intergenic 45.0%
!!! GATGGCTAGCTTTTTAGGGA+GGG - chr1_1:9327076-9327095 None:intergenic 45.0%
!!! TGATGGCTAGCTTTTTAGGG+AGG - chr1_1:9327077-9327096 None:intergenic 45.0%
CCCTAAAAAGCTAGCCATCA+AGG + chr1_1:9327077-9327096 Msa0006440:intron 45.0%
!!! CCCTTGATGGCTAGCTTTTT+AGG - chr1_1:9327081-9327100 None:intergenic 45.0%
TTGTTAACCACAGCTGCAGA+TGG + chr1_1:9327478-9327497 Msa0006440:CDS 45.0%
GCTCGTTTGTATGGTAGTCT+TGG + chr1_1:9327553-9327572 Msa0006440:CDS 45.0%
AACCTGCCTCGAAAAGAAAG+CGG - chr1_1:9327593-9327612 None:intergenic 45.0%
AACCGTTGCTTCTTCACAGA+AGG + chr1_1:9327950-9327969 Msa0006440:intron 45.0%
ACCGTTGCTTCTTCACAGAA+GGG + chr1_1:9327951-9327970 Msa0006440:intron 45.0%
TCCCTTCTGTGAAGAAGCAA+CGG - chr1_1:9327955-9327974 None:intergenic 45.0%
GCTTCTTCACAGAAGGGAAT+TGG + chr1_1:9327957-9327976 Msa0006440:intron 45.0%
! TCAATGGAGTACCATCCAGA+TGG + chr1_1:9328040-9328059 Msa0006440:CDS 45.0%
ATAACTCCTGCTGGGCAAAA+TGG + chr1_1:9328161-9328180 Msa0006440:CDS 45.0%
CACTTTCGAATTCGTCTGAG+AGG + chr1_1:9328195-9328214 Msa0006440:CDS 45.0%
CAATGTCCATTTGTGTTGGG+TGG - chr1_1:9328442-9328461 None:intergenic 45.0%
GTAATCCTGCTAGAGAAGAC+TGG + chr1_1:9328468-9328487 Msa0006440:CDS 45.0%
GTGTAAATGAAAGGGCCTGA+AGG - chr1_1:9328509-9328528 None:intergenic 45.0%
!! GATCCAGGTTTTAGTGGAAC+TGG + chr1_1:9328595-9328614 Msa0006440:CDS 45.0%
TTGCCAGTTCCACTAAAACC+TGG - chr1_1:9328601-9328620 None:intergenic 45.0%
GGTAAAAGGCTTATGCTCAC+AGG - chr1_1:9328695-9328714 None:intergenic 45.0%
ATCTGGCATTCCAACATCAG+TGG + chr1_1:9328739-9328758 Msa0006440:CDS 45.0%
TCTGGCATTCCAACATCAGT+GGG + chr1_1:9328740-9328759 Msa0006440:CDS 45.0%
ATGCACCCAGGAATTGTAAC+TGG - chr1_1:9328767-9328786 None:intergenic 45.0%
AAACAATGAACGATGCACCC+AGG - chr1_1:9328779-9328798 None:intergenic 45.0%
! GGGTGCATCGTTCATTGTTT+TGG + chr1_1:9328779-9328798 Msa0006440:CDS 45.0%
GAGGTTGACAATCTGCTTCT+TGG + chr1_1:9328827-9328846 Msa0006440:CDS 45.0%
GGTTGACAATCTGCTTCTTG+GGG + chr1_1:9328829-9328848 Msa0006440:CDS 45.0%
TTGTCCTTTCTGACCCTTTC+CGG + chr1_1:9328864-9328883 Msa0006440:CDS 45.0%
! ACTTTGGAGATCCACAACAC+CGG - chr1_1:9328886-9328905 None:intergenic 45.0%
GGCGGTACTACAGAAATACT+TGG - chr1_1:9328926-9328945 None:intergenic 45.0%
GATATCAGCAATGGAAGTGG+CGG - chr1_1:9328944-9328963 None:intergenic 45.0%
TCACATGTTGTTGGAGGTGA+TGG + chr1_1:9328962-9328981 Msa0006440:CDS 45.0%
CACATGTTGTTGGAGGTGAT+GGG + chr1_1:9328963-9328982 Msa0006440:CDS 45.0%
ACATGTTGTTGGAGGTGATG+GGG + chr1_1:9328964-9328983 Msa0006440:CDS 45.0%
AAGGCGAAATTCGTGATGTG+TGG + chr1_1:9329002-9329021 Msa0006440:CDS 45.0%
TCGTGATGTGTGGATAAGTC+TGG + chr1_1:9329012-9329031 Msa0006440:CDS 45.0%
TGGATAAGTCTGGCTAATGC+AGG + chr1_1:9329022-9329041 Msa0006440:CDS 45.0%
CAGGCACATATTTCACTCTC+CGG + chr1_1:9329061-9329080 Msa0006440:CDS 45.0%
AGGCACATATTTCACTCTCC+GGG + chr1_1:9329062-9329081 Msa0006440:CDS 45.0%
! TGATGGGCAACTTGCATCTT+TGG - chr1_1:9329230-9329249 None:intergenic 45.0%
CAAAAGGAGGAGAGGAAACA+TGG - chr1_1:9329426-9329445 None:intergenic 45.0%
ATGCCAGTGTGCCATAAGAT+GGG - chr1_1:9329535-9329554 None:intergenic 45.0%
AATGCCAGTGTGCCATAAGA+TGG - chr1_1:9329536-9329555 None:intergenic 45.0%
CAGTGGACCTGAAATAAACG+TGG - chr1_1:9329677-9329696 None:intergenic 45.0%
! GGATCTTCAGAGGTTTTCAG+TGG - chr1_1:9329694-9329713 None:intergenic 45.0%
TACAGCGTTTGGATCTTCAG+AGG - chr1_1:9329704-9329723 None:intergenic 45.0%
GCAAAACACAAATCTGCAGG+GGG - chr1_1:9329750-9329769 None:intergenic 45.0%
CCTGCAAAACACAAATCTGC+AGG - chr1_1:9329753-9329772 None:intergenic 45.0%
! CCTGCAGATTTGTGTTTTGC+AGG + chr1_1:9329750-9329769 Msa0006440:CDS 45.0%
! GCAGGGTTTGTCTTTTGTGA+AGG + chr1_1:9329768-9329787 Msa0006440:CDS 45.0%
TAGATCCTTTCAGAGGAAGC+TGG + chr1_1:9329917-9329936 Msa0006440:CDS 45.0%
AGATCCTTTCAGAGGAAGCT+GGG + chr1_1:9329918-9329937 Msa0006440:CDS 45.0%
ACTGGAGAACAACAGTAACG+AGG + chr1_1:9330011-9330030 Msa0006440:CDS 45.0%
ACTCATACAGATGGGATTGG+TGG + chr1_1:9330174-9330193 Msa0006440:CDS 45.0%
TGCTCTACAGACATCAGTCA+TGG + chr1_1:9330341-9330360 Msa0006440:CDS 45.0%
CTGCCAGATCCATTGACATT+TGG + chr1_1:9330372-9330391 Msa0006440:CDS 45.0%
! ATGTGCAAGCACGGAACTTT+TGG - chr1_1:9330478-9330497 None:intergenic 45.0%
! TGTCACTTCATGTGCAAGCA+CGG - chr1_1:9330487-9330506 None:intergenic 45.0%
TGCACATGAAGTGACACCAA+TGG + chr1_1:9330491-9330510 Msa0006440:CDS 45.0%
AGTGACACCAATGGTAGTTG+TGG + chr1_1:9330500-9330519 Msa0006440:CDS 45.0%
TTACGGACCACAACTACCAT+TGG - chr1_1:9330510-9330529 None:intergenic 45.0%
TACATGCAGAGATGTAGCTG+GGG + chr1_1:9330566-9330585 Msa0006440:CDS 45.0%
GGTCCACAGAACAGTTGATT+TGG - chr1_1:9330610-9330629 None:intergenic 45.0%
!! GATTGATTTGCTGAAGTGGG+GGG - chr1_1:9330756-9330775 None:intergenic 45.0%
CGAGTAGTGTATACTCTCCT+GGG - chr1_1:9330804-9330823 None:intergenic 45.0%
TCCACGGCAAAAAATTGGCT+CGG - chr1_1:9330890-9330909 None:intergenic 45.0%
CATATCACCTTCGTGTCCTT+GGG + chr1_1:9330914-9330933 Msa0006440:CDS 45.0%
ATGTATTCCCAAGGACACGA+AGG - chr1_1:9330924-9330943 None:intergenic 45.0%
!! TTATAACATAAAAATTAAAT+CGG - chr1_1:9323443-9323462 None:intergenic 5.0%
!!! GTTTTTTTATTTTATTTTTT+TGG + chr1_1:9325372-9325391 Msa0006440:intron 5.0%
!!! TATATATGAATTTTTAAATT+TGG - chr1_1:9325645-9325664 None:intergenic 5.0%
!!! TTTTAAAATTTGTTTATTTT+TGG + chr1_1:9331099-9331118 Msa0006440:three_prime_UTR 5.0%
CGATTGGGATTACGGCGATT+TGG - chr1_1:9322786-9322805 None:intergenic 50.0%
! GTGGTGGGATTTGTCCGATT+GGG - chr1_1:9322801-9322820 None:intergenic 50.0%
! TTCGGTGTAGAAGGAGCTGA+TGG - chr1_1:9322881-9322900 None:intergenic 50.0%
CCCCTTTCACTCATCAACCT+TGG + chr1_1:9322911-9322930 Msa0006440:CDS 50.0%
! GAATTTGAAGCGGAGGGAAC+CGG - chr1_1:9322941-9322960 None:intergenic 50.0%
! CGAGTACGAATTTGAAGCGG+AGG - chr1_1:9322948-9322967 None:intergenic 50.0%
CGCCGAGTACGAATTTGAAG+CGG - chr1_1:9322951-9322970 None:intergenic 50.0%
CGCTTCAAATTCGTACTCGG+CGG + chr1_1:9322949-9322968 Msa0006440:CDS 50.0%
CACCGATCAACAAGCGAAGA+AGG - chr1_1:9323108-9323127 None:intergenic 50.0%
AGGACGCATTCGTGCAATGA+AGG + chr1_1:9323379-9323398 Msa0006440:intron 50.0%
TGCAATGAAGGCAGTGTGTC+TGG + chr1_1:9323391-9323410 Msa0006440:intron 50.0%
!! GCAGTGTGTCTGGTCTTGAT+CGG + chr1_1:9323401-9323420 Msa0006440:intron 50.0%
TCTGGGCCATTCCATCAAGT+AGG + chr1_1:9323479-9323498 Msa0006440:intron 50.0%
GAGGATGGAAGTAAGAGAGG+TGG + chr1_1:9323992-9324011 Msa0006440:intron 50.0%
! TCAAGCTAGTCTCAGCTCAG+AGG + chr1_1:9324171-9324190 Msa0006440:CDS 50.0%
TGGTTTCGTGTTCTTGGCTC+TGG + chr1_1:9324294-9324313 Msa0006440:intron 50.0%
!! TTCGTGTTCTTGGCTCTGGT+TGG + chr1_1:9324298-9324317 Msa0006440:intron 50.0%
!!! ACGCCCAAGTCTCCGTTTTT+TGG - chr1_1:9324647-9324666 None:intergenic 50.0%
! AGAACTTGGCAGGTTGACTG+GGG + chr1_1:9324744-9324763 Msa0006440:CDS 50.0%
GGTTGACTGGGGATTACTTC+TGG + chr1_1:9324755-9324774 Msa0006440:CDS 50.0%
GGGGATTACTTCTGGTATGC+TGG + chr1_1:9324763-9324782 Msa0006440:CDS 50.0%
CTTCTGGTATGCTGGTGCAT+TGG + chr1_1:9324771-9324790 Msa0006440:CDS 50.0%
TGGTATGCTGGTGCATTGGA+GGG + chr1_1:9324775-9324794 Msa0006440:CDS 50.0%
GGAACCGGTGAAGTAATGTG+AGG + chr1_1:9324958-9324977 Msa0006440:intron 50.0%
GAGTAACCACACCACAGATC+TGG - chr1_1:9325116-9325135 None:intergenic 50.0%
! TCAAGGGCATGAGGTTTAGG+CGG + chr1_1:9325605-9325624 Msa0006440:intron 50.0%
!!! AAAGACTGGGTTTTCGGGTC+GGG - chr1_1:9326164-9326183 None:intergenic 50.0%
TAGCAAGTGAAACGCAGACC+GGG + chr1_1:9326183-9326202 Msa0006440:intron 50.0%
ATCCAGAAATCCGGGTTCGT+GGG - chr1_1:9326220-9326239 None:intergenic 50.0%
TCTGAATCGCCGGAATCGTA+CGG + chr1_1:9326246-9326265 Msa0006440:intron 50.0%
! GGAAATTGGTGTTCGCGGTT+TGG - chr1_1:9326303-9326322 None:intergenic 50.0%
AAGTCGCCGGAATCGGAAAT+TGG - chr1_1:9326317-9326336 None:intergenic 50.0%
! TCCAACTACGAGTTGGATCG+CGG + chr1_1:9326378-9326397 Msa0006440:intron 50.0%
!! GATCGCGGTTTTGTCTACCT+TGG + chr1_1:9326393-9326412 Msa0006440:intron 50.0%
CAGTGCATGCTACATGGCAT+AGG + chr1_1:9326502-9326521 Msa0006440:intron 50.0%
GGGCCAGAAAGATTCAGTCT+TGG + chr1_1:9326645-9326664 Msa0006440:CDS 50.0%
TAACAACTCCACCACCTCCT+TGG - chr1_1:9327464-9327483 None:intergenic 50.0%
TTTAGCACCATCTGCAGCTG+TGG - chr1_1:9327488-9327507 None:intergenic 50.0%
CCATGCAGTAAGAGGATCTC+CGG - chr1_1:9328102-9328121 None:intergenic 50.0%
TCTTACTGCATGGAGTGCAG+CGG + chr1_1:9328109-9328128 Msa0006440:CDS 50.0%
TGCCCAGCAGGAGTTATTAG+AGG - chr1_1:9328158-9328177 None:intergenic 50.0%
TCCATTTGTGTTGGGTGGAC+GGG - chr1_1:9328437-9328456 None:intergenic 50.0%
GTCCATTTGTGTTGGGTGGA+CGG - chr1_1:9328438-9328457 None:intergenic 50.0%
ATCCTGCTAGAGAAGACTGG+TGG + chr1_1:9328471-9328490 Msa0006440:CDS 50.0%
TCCTGCTAGAGAAGACTGGT+GGG + chr1_1:9328472-9328491 Msa0006440:CDS 50.0%
!! AGAGCCGATCCAGGTTTTAG+TGG + chr1_1:9328589-9328608 Msa0006440:CDS 50.0%
CTGGCATTCCAACATCAGTG+GGG + chr1_1:9328741-9328760 Msa0006440:CDS 50.0%
TGGGGCCAGTTACAATTCCT+GGG + chr1_1:9328759-9328778 Msa0006440:CDS 50.0%
AGAAAGGACAAGCCCTTGTG+CGG - chr1_1:9328855-9328874 None:intergenic 50.0%
AACACCGGAAAGGGTCAGAA+AGG - chr1_1:9328871-9328890 None:intergenic 50.0%
GAGATCCACAACACCGGAAA+GGG - chr1_1:9328880-9328899 None:intergenic 50.0%
! GGGGCCATCATTTTGTACGA+AGG + chr1_1:9328983-9329002 Msa0006440:CDS 50.0%
AGGCACAGTTCCAATTGAGC+AGG + chr1_1:9329042-9329061 Msa0006440:CDS 50.0%
!! CTTCTGCTCCAGGCTTTAGA+GGG - chr1_1:9329141-9329160 None:intergenic 50.0%
! ACTTCTGCTCCAGGCTTTAG+AGG - chr1_1:9329142-9329161 None:intergenic 50.0%
GGGAATGTAACTTCTGCTCC+AGG - chr1_1:9329151-9329170 None:intergenic 50.0%
TGGCAGACGCTGATAATACG+AGG + chr1_1:9329200-9329219 Msa0006440:CDS 50.0%
TCAGTCTGCAGGCCTTACAT+TGG + chr1_1:9329314-9329333 Msa0006440:intron 50.0%
AAATCTGCAGGGGGACAACA+AGG - chr1_1:9329741-9329760 None:intergenic 50.0%
! GAAGGCTCAGCTGCTTTCAA+TGG + chr1_1:9329786-9329805 Msa0006440:CDS 50.0%
GATCCTTTCAGAGGAAGCTG+GGG + chr1_1:9329919-9329938 Msa0006440:CDS 50.0%
! CATACAGATGGGATTGGTGG+AGG + chr1_1:9330177-9330196 Msa0006440:CDS 50.0%
!! CTTTTGGAAGCAGGGGATTC+AGG - chr1_1:9330462-9330481 None:intergenic 50.0%
!! CACGGAACTTTTGGAAGCAG+GGG - chr1_1:9330469-9330488 None:intergenic 50.0%
!! GCACGGAACTTTTGGAAGCA+GGG - chr1_1:9330470-9330489 None:intergenic 50.0%
!! AGCACGGAACTTTTGGAAGC+AGG - chr1_1:9330471-9330490 None:intergenic 50.0%
GCTGGGGAAAACTGTGTAGA+TGG + chr1_1:9330582-9330601 Msa0006440:CDS 50.0%
CTGAAGTGGGGGGATTTCAA+CGG - chr1_1:9330746-9330765 None:intergenic 50.0%
GTGTATACTCTCCTGGGACA+AGG - chr1_1:9330798-9330817 None:intergenic 50.0%
GCGAGTAGTGTATACTCTCC+TGG - chr1_1:9330805-9330824 None:intergenic 50.0%
TGCATCATCGATCACTGCTG+CGG - chr1_1:9330827-9330846 None:intergenic 50.0%
GGTGGTCCACGGCAAAAAAT+TGG - chr1_1:9330895-9330914 None:intergenic 50.0%
GAAGGTGATATGGTGGTCCA+CGG - chr1_1:9330906-9330925 None:intergenic 50.0%
AGGACACGAAGGTGATATGG+TGG - chr1_1:9330913-9330932 None:intergenic 50.0%
CCAAGGACACGAAGGTGATA+TGG - chr1_1:9330916-9330935 None:intergenic 50.0%
CCATATCACCTTCGTGTCCT+TGG + chr1_1:9330913-9330932 Msa0006440:CDS 50.0%
TTACATGCGGGAATGCTCCT+TGG + chr1_1:9331031-9331050 Msa0006440:three_prime_UTR 50.0%
TACATGCGGGAATGCTCCTT+GGG + chr1_1:9331032-9331051 Msa0006440:three_prime_UTR 50.0%
GGTTCAACTAGAAGAGCCCA+AGG - chr1_1:9331051-9331070 None:intergenic 50.0%
GTTCCATGGTGTGTGATCGC+CGG - chr1_1:9322732-9322751 None:intergenic 55.0%
!! GGTGGTGGGATTTGTCCGAT+TGG - chr1_1:9322802-9322821 None:intergenic 55.0%
AGAGAGGGATGGTGTGGAGA+GGG - chr1_1:9322855-9322874 None:intergenic 55.0%
GGTGTAGAAGGAGCTGATGG+CGG - chr1_1:9322878-9322897 None:intergenic 55.0%
TGCGGCGTTTCCCTGATTGA+AGG + chr1_1:9323531-9323550 Msa0006440:intron 55.0%
TCTAACGTTGCACGATCCGC+AGG - chr1_1:9324037-9324056 None:intergenic 55.0%
! AGCTAGTCTCAGCTCAGAGG+AGG + chr1_1:9324174-9324193 Msa0006440:CDS 55.0%
! GGTGATTACTGCTTGCTGGC+AGG + chr1_1:9324682-9324701 Msa0006440:CDS 55.0%
CTGGTATGCTGGTGCATTGG+AGG + chr1_1:9324774-9324793 Msa0006440:CDS 55.0%
ATCGAGACATGCAGCCGTAG+TGG + chr1_1:9325305-9325324 Msa0006440:intron 55.0%
AGAAATCCGGGTTCGTGGGT+TGG - chr1_1:9326216-9326235 None:intergenic 55.0%
AACCCACGAACCCGGATTTC+TGG + chr1_1:9326215-9326234 Msa0006440:intron 55.0%
GATCCAGAAATCCGGGTTCG+TGG - chr1_1:9326221-9326240 None:intergenic 55.0%
TTCCGATTCCGGCGACTTTC+CGG + chr1_1:9326319-9326338 Msa0006440:intron 55.0%
GGGAGGTGAGATCGCAAACT+CGG + chr1_1:9326351-9326370 Msa0006440:intron 55.0%
CGGACGATCCAACTACGAGT+TGG + chr1_1:9326371-9326390 Msa0006440:intron 55.0%
ACCGCGATCCAACTCGTAGT+TGG - chr1_1:9326382-9326401 None:intergenic 55.0%
AGTGGGCAGTGCATGCTACA+TGG + chr1_1:9326496-9326515 Msa0006440:intron 55.0%
! GACTTGGTTCTCCCCCTTGA+TGG - chr1_1:9327094-9327113 None:intergenic 55.0%
CTCAATCAACAGGCGAGAGC+TGG + chr1_1:9327438-9327457 Msa0006440:intron 55.0%
!! AGCCGCTTTCTTTTCGAGGC+AGG + chr1_1:9327588-9327607 Msa0006440:CDS 55.0%
CCGGAGATCCTCTTACTGCA+TGG + chr1_1:9328099-9328118 Msa0006440:CDS 55.0%
GCTGCACTCCATGCAGTAAG+AGG - chr1_1:9328110-9328129 None:intergenic 55.0%
! GCAAGACCATTTTGCCCAGC+AGG - chr1_1:9328170-9328189 None:intergenic 55.0%
TTGTGTTGGGTGGACGGGAA+AGG - chr1_1:9328432-9328451 None:intergenic 55.0%
TCCCGTCCACCCAACACAAA+TGG + chr1_1:9328433-9328452 Msa0006440:CDS 55.0%
ACCCACCAGTCTTCTCTAGC+AGG - chr1_1:9328476-9328495 None:intergenic 55.0%
TGCTAGAGAAGACTGGTGGG+TGG + chr1_1:9328475-9328494 Msa0006440:CDS 55.0%
! GCTAGAGAAGACTGGTGGGT+GGG + chr1_1:9328476-9328495 Msa0006440:CDS 55.0%
GATTGTTGGAGAGCCGATCC+AGG + chr1_1:9328580-9328599 Msa0006440:CDS 55.0%
GTAACTGGCCCCACTGATGT+TGG - chr1_1:9328752-9328771 None:intergenic 55.0%
GTGGGGCCAGTTACAATTCC+TGG + chr1_1:9328758-9328777 Msa0006440:CDS 55.0%
! TCTGACCCTTTCCGGTGTTG+TGG + chr1_1:9328872-9328891 Msa0006440:CDS 55.0%
GGAGATCCACAACACCGGAA+AGG - chr1_1:9328881-9328900 None:intergenic 55.0%
!! TCTCACCTCCCTCTAAAGCC+TGG + chr1_1:9329130-9329149 Msa0006440:CDS 55.0%
GCTCCCATCTTATGGCACAC+TGG + chr1_1:9329529-9329548 Msa0006440:intron 55.0%
GTTTCATGTGCGCTGTGCTG+AGG + chr1_1:9329601-9329620 Msa0006440:intron 55.0%
GATCCAAACGCTGTATCCCC+TGG + chr1_1:9329709-9329728 Msa0006440:CDS 55.0%
CTACCAGGGGATACAGCGTT+TGG - chr1_1:9329715-9329734 None:intergenic 55.0%
! GACAACAAGGCGTCTACCAG+GGG - chr1_1:9329728-9329747 None:intergenic 55.0%
! GGACAACAAGGCGTCTACCA+GGG - chr1_1:9329729-9329748 None:intergenic 55.0%
AGTCCCCAGCTTCCTCTGAA+AGG - chr1_1:9329925-9329944 None:intergenic 55.0%
CTGATGTCTGTAGAGCAGCC+TGG - chr1_1:9330338-9330357 None:intergenic 55.0%
TGCCTGCATTTCCTTGTCCC+AGG + chr1_1:9330784-9330803 Msa0006440:CDS 55.0%
CTCCTGGGACAAGGAAATGC+AGG - chr1_1:9330789-9330808 None:intergenic 55.0%
!!! GCCGAGCCAATTTTTTGCCG+TGG + chr1_1:9330886-9330905 Msa0006440:CDS 55.0%
TGTGTGATCGCCGGAGTGGT+TGG - chr1_1:9322723-9322742 None:intergenic 60.0%
ATGGTGTGTGATCGCCGGAG+TGG - chr1_1:9322727-9322746 None:intergenic 60.0%
ACTCCGGCGATCACACACCA+TGG + chr1_1:9322726-9322745 Msa0006440:exon 60.0%
TAGTAGTCGCGGAGGAGTGG+TGG - chr1_1:9322820-9322839 None:intergenic 60.0%
GAGTAGTAGTCGCGGAGGAG+TGG - chr1_1:9322823-9322842 None:intergenic 60.0%
GGAGGAGGGAGTAGTAGTCG+CGG - chr1_1:9322831-9322850 None:intergenic 60.0%
GAGAGAGGGATGGTGTGGAG+AGG - chr1_1:9322856-9322875 None:intergenic 60.0%
!! AGGAGCTGATGGCGGAGAGA+GGG - chr1_1:9322870-9322889 None:intergenic 60.0%
!! AAGGAGCTGATGGCGGAGAG+AGG - chr1_1:9322871-9322890 None:intergenic 60.0%
AACGTTGCACGATCCGCAGG+TGG - chr1_1:9324034-9324053 None:intergenic 60.0%
GGGCGTGCTCAGAAGACGAT+TGG + chr1_1:9324661-9324680 Msa0006440:CDS 60.0%
GGGCAGTGTTTGTGCCTTGC+TGG + chr1_1:9324795-9324814 Msa0006440:CDS 60.0%
!! TCGTGGGTTGGTTCTCGACC+CGG - chr1_1:9326204-9326223 None:intergenic 60.0%
CGAGAACCAACCCACGAACC+CGG + chr1_1:9326207-9326226 Msa0006440:intron 60.0%
TGCCGGAAAGTCGCCGGAAT+CGG - chr1_1:9326324-9326343 None:intergenic 60.0%
ATTCCGGCGACTTTCCGGCA+CGG + chr1_1:9326324-9326343 Msa0006440:intron 60.0%
! TTGGGTACTATGGGGTGCCC+AGG - chr1_1:9327161-9327180 None:intergenic 60.0%
CTGCTCTCTGCAGTTCGTGC+CGG + chr1_1:9328080-9328099 Msa0006440:CDS 60.0%
GTGCAGCGGCACGACTACTT+AGG + chr1_1:9328123-9328142 Msa0006440:CDS 60.0%
TCGTCTGAGAGGCTACCACC+AGG + chr1_1:9328206-9328225 Msa0006440:CDS 60.0%
CGTCTGAGAGGCTACCACCA+GGG + chr1_1:9328207-9328226 Msa0006440:CDS 60.0%
! TGGGTGGGTTCTGCTCCTTC+AGG + chr1_1:9328491-9328510 Msa0006440:CDS 60.0%
GTGGAACTGGCAAACCCGTG+TGG + chr1_1:9328608-9328627 Msa0006440:CDS 60.0%
TGCTTCTTGGGGCCGCACAA+GGG + chr1_1:9328840-9328859 Msa0006440:CDS 60.0%
!! CTGCTCCAGGCTTTAGAGGG+AGG - chr1_1:9329138-9329157 None:intergenic 60.0%
TCCCTGTGACTTTGCGAGCC+TGG + chr1_1:9329167-9329186 Msa0006440:CDS 60.0%
GCCAGGCTCGCAAAGTCACA+GGG - chr1_1:9329171-9329190 None:intergenic 60.0%
TGCCAGGCTCGCAAAGTCAC+AGG - chr1_1:9329172-9329191 None:intergenic 60.0%
TGTGACTTTGCGAGCCTGGC+AGG + chr1_1:9329171-9329190 Msa0006440:CDS 60.0%
ACTTTGCGAGCCTGGCAGGT+TGG + chr1_1:9329175-9329194 Msa0006440:CDS 60.0%
! GGGACAACAAGGCGTCTACC+AGG - chr1_1:9329730-9329749 None:intergenic 60.0%
CACTCGGGACGCAATAGCTC+TGG + chr1_1:9330288-9330307 Msa0006440:CDS 60.0%
ACATCCTTCGGGCTCGTGCT+AGG + chr1_1:9330851-9330870 Msa0006440:CDS 60.0%
CATCCTTCGGGCTCGTGCTA+GGG + chr1_1:9330852-9330871 Msa0006440:CDS 60.0%
AGTCGCGGAGGAGTGGTGGT+GGG - chr1_1:9322816-9322835 None:intergenic 65.0%
TAGTCGCGGAGGAGTGGTGG+TGG - chr1_1:9322817-9322836 None:intergenic 65.0%
GGAGGGAGTAGTAGTCGCGG+AGG - chr1_1:9322828-9322847 None:intergenic 65.0%
GGTGTGGAGAGGGAGGAGGA+GGG - chr1_1:9322845-9322864 None:intergenic 65.0%
TGGTGTGGAGAGGGAGGAGG+AGG - chr1_1:9322846-9322865 None:intergenic 65.0%
GGATGGTGTGGAGAGGGAGG+AGG - chr1_1:9322849-9322868 None:intergenic 65.0%
GAGGGATGGTGTGGAGAGGG+AGG - chr1_1:9322852-9322871 None:intergenic 65.0%
TGGCGGAGAGAGGGATGGTG+TGG - chr1_1:9322861-9322880 None:intergenic 65.0%
!! GCTGATGGCGGAGAGAGGGA+TGG - chr1_1:9322866-9322885 None:intergenic 65.0%
CGGAGGGAACCGGAATCCCA+AGG - chr1_1:9322931-9322950 None:intergenic 65.0%
CGGCGCTACTCCTAGTCCCT+GGG + chr1_1:9322969-9322988 Msa0006440:CDS 65.0%
TTCGGGTCGGGTCTTGACCC+CGG - chr1_1:9326152-9326171 None:intergenic 65.0%
TTGCCGTGCCGGAAAGTCGC+CGG - chr1_1:9326330-9326349 None:intergenic 65.0%
GCGACTTTCCGGCACGGCAA+GGG + chr1_1:9326330-9326349 Msa0006440:intron 65.0%
CGACTTTCCGGCACGGCAAG+GGG + chr1_1:9326331-9326350 Msa0006440:intron 65.0%
CAACAGGCGAGAGCTGGCCA+AGG + chr1_1:9327444-9327463 Msa0006440:intron 65.0%
AGAGCTGGCCAAGGAGGTGG+TGG + chr1_1:9327453-9327472 Msa0006440:CDS 65.0%
TCGGCACAACGAGTCCCTGG+TGG - chr1_1:9328224-9328243 None:intergenic 65.0%
GGATCGGCACAACGAGTCCC+TGG - chr1_1:9328227-9328246 None:intergenic 65.0%
CTGCTTCTTGGGGCCGCACA+AGG + chr1_1:9328839-9328858 Msa0006440:CDS 65.0%
GTCTGCCACACCAACCTGCC+AGG - chr1_1:9329188-9329207 None:intergenic 65.0%
TTGCCCTAGCACGAGCCCGA+AGG - chr1_1:9330858-9330877 None:intergenic 65.0%
GCGGCGCTACTCCTAGTCCC+TGG + chr1_1:9322968-9322987 Msa0006440:CDS 70.0%
GGCGACTTTCCGGCACGGCA+AGG + chr1_1:9326329-9326348 Msa0006440:intron 70.0%
CTTTCCGGCACGGCAAGGGG+AGG + chr1_1:9326334-9326353 Msa0006440:intron 70.0%
CTCACCTCCCCTTGCCGTGC+CGG - chr1_1:9326341-9326360 None:intergenic 70.0%
CAGGCGAGAGCTGGCCAAGG+AGG + chr1_1:9327447-9327466 Msa0006440:intron 70.0%
GCGAGAGCTGGCCAAGGAGG+TGG + chr1_1:9327450-9327469 Msa0006440:CDS 70.0%
!! GCGAGCCTGGCAGGTTGGTG+TGG + chr1_1:9329180-9329199 Msa0006440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9322585 9331156 9322585 ID=Msa0006440;Name=Msa0006440
chr1_1 mRNA 9322585 9331156 9322585 ID=Msa0006440-mRNA-1;Parent=Msa0006440;Name=Msa0006440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=160|0.88|0.9|1|1|1|10|211|1180
chr1_1 exon 9322585 9323155 9322585 ID=Msa0006440-mRNA-1:exon:3298;Parent=Msa0006440-mRNA-1
chr1_1 exon 9324007 9324195 9324007 ID=Msa0006440-mRNA-1:exon:3299;Parent=Msa0006440-mRNA-1
chr1_1 exon 9324634 9324816 9324634 ID=Msa0006440-mRNA-1:exon:3300;Parent=Msa0006440-mRNA-1
chr1_1 exon 9326634 9326737 9326634 ID=Msa0006440-mRNA-1:exon:3301;Parent=Msa0006440-mRNA-1
chr1_1 exon 9326901 9326960 9326901 ID=Msa0006440-mRNA-1:exon:3302;Parent=Msa0006440-mRNA-1
chr1_1 exon 9327450 9327738 9327450 ID=Msa0006440-mRNA-1:exon:3303;Parent=Msa0006440-mRNA-1
chr1_1 exon 9327969 9328264 9327969 ID=Msa0006440-mRNA-1:exon:3304;Parent=Msa0006440-mRNA-1
chr1_1 exon 9328421 9329268 9328421 ID=Msa0006440-mRNA-1:exon:3305;Parent=Msa0006440-mRNA-1
chr1_1 exon 9329689 9330630 9329689 ID=Msa0006440-mRNA-1:exon:3306;Parent=Msa0006440-mRNA-1
chr1_1 exon 9330725 9331156 9330725 ID=Msa0006440-mRNA-1:exon:3307;Parent=Msa0006440-mRNA-1
chr1_1 five_prime_UTR 9322585 9322744 9322585 ID=Msa0006440-mRNA-1:five_prime_utr;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9322745 9323155 9322745 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9324007 9324195 9324007 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9324634 9324816 9324634 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9326634 9326737 9326634 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9326901 9326960 9326901 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9327450 9327738 9327450 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9327969 9328264 9327969 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9328421 9329268 9328421 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9329689 9330630 9329689 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 CDS 9330725 9330945 9330725 ID=Msa0006440-mRNA-1:cds;Parent=Msa0006440-mRNA-1
chr1_1 three_prime_UTR 9330946 9331156 9330946 ID=Msa0006440-mRNA-1:three_prime_utr;Parent=Msa0006440-mRNA-1
Gene Sequence

>Msa0006440

ATGGAACCAGAAGTAAGCATAGAAGGCTCTTCCACAATCCAAATCGCCGTAATCCCAATCGGACAAATCCCACCACCACTCCTCCGCGACTACTACTCCCTCCTCCTCCCTCTCCACACCATCCCTCTCTCCGCCATCAGCTCCTTCTACACCGAACACCAGAAATCCCCTTTCACTCATCAACCTTGGGATTCCGGTTCCCTCCGCTTCAAATTCGTACTCGGCGGCGCTACTCCTAGTCCCTGGGAAGATTTTCAATCGCATCGGAAAACTCTTGCTGTTGTTGGCATTGTTCATTGTCCTTCTTCGTTGGATCTTAATGACGTTGTTGATCAGTTTGCAAGTTCGTGTAAATCTTATCCTTCTTCGCTTGTTGATCGGTGCTTTGCGTTTTACCCTAATGATTCTCAGAGAGGTGGAAATTTGAAGTTATTTCCACCTGCGGATCGTGCAACGTTAGAGTTTCATTTGAATACTATGATGCAAGAAGTAGCTGCTTCGTTGCTAATGGAGTTTGAGAAGTGGGTGCTTCAAGCAGAATCTTCTGGAACTATTCTCAAGACGCCTTTGGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTTATCAAGGCCAAAAAACGGAGACTTGGGCGTGCTCAGAAGACGATTGGTGATTACTGCTTGCTGGCAGGTTCTCCTGTTGATGCTAATGCTCATTATTCTACTGCATTAGAACTTGGCAGGTTGACTGGGGATTACTTCTGGTATGCTGGTGCATTGGAGGGCAGTGTTTGTGCCTTGCTGATTGACCGTATGGGCCAGAAAGATTCAGTCTTGGAGGATGAAGTTAGATATCGTTATAATAGTGTCATCTTGAATTACAAGAAGTCACAAGATAATACTCAGCGAGTTTCCCCCATAACTTTTGAACTTGAAGCTACTTTGAAATTAGCAAGGTTCCTTTGCAGGCGAGAGCTGGCCAAGGAGGTGGTGGAGTTGTTAACCACAGCTGCAGATGGTGCTAAATCTTTAATTGATGCAAGTGATAGACTCATATTATACATTGAAATAGCTCGTTTGTATGGTAGTCTTGGATACCAGAGGAAAGCCGCTTTCTTTTCGAGGCAGGTTGCTCAGTTATATTTGCAGCAAGAAAATAGGCTGGCTGCAATTAGTGCAATGCAAGTTTTGGCAATGACCACAAAAGCTTATCATGTTCAAAGTAGATCATCGGTTTCCGATCATTCTATTCATAATAAGGGAATTGGATCAGATAAACCTGATGATGGGAAAATATATCACCAATCAGTTGTCTCATTGTTTGAGTCTCAATGGAGTACCATCCAGATGGTTGTATTAAGAGAAATTCTGCTCTCTGCAGTTCGTGCCGGAGATCCTCTTACTGCATGGAGTGCAGCGGCACGACTACTTAGGTCCTACTATCCTCTAATAACTCCTGCTGGGCAAAATGGTCTTGCTAATGCACTTTCGAATTCGTCTGAGAGGCTACCACCAGGGACTCGTTGTGCCGATCCCGCCTTACCTTTTATAAGGGTGCATTCCTTTCCCGTCCACCCAACACAAATGGACATTGTTAAACGTAATCCTGCTAGAGAAGACTGGTGGGTGGGTTCTGCTCCTTCAGGCCCTTTCATTTACACGCCATTCAGTAAAGGAGATCCAAATAATATCAAGAAGCAAGAGCTTGTTTGGATTGTTGGAGAGCCGATCCAGGTTTTAGTGGAACTGGCAAACCCGTGTGGCTTTGATTTAAGAGTCGATAGCATATATCTGTCCGTGCATTCAGGAAATTTTGATGCTTTTCCTGTGAGCATAAGCCTTTTACCAAATTCTTCAAAAGTGATTACCTTATCTGGCATTCCAACATCAGTGGGGCCAGTTACAATTCCTGGGTGCATCGTTCATTGTTTTGGTGTTATTACTGAACACCTATTTAAAGAGGTTGACAATCTGCTTCTTGGGGCCGCACAAGGGCTTGTCCTTTCTGACCCTTTCCGGTGTTGTGGATCTCCAAAGTTGAAGAATGTATCTGTTCCAAGTATTTCTGTAGTACCGCCACTTCCATTGCTGATATCACATGTTGTTGGAGGTGATGGGGCCATCATTTTGTACGAAGGCGAAATTCGTGATGTGTGGATAAGTCTGGCTAATGCAGGCACAGTTCCAATTGAGCAGGCACATATTTCACTCTCCGGGAAAAACCAAGATTCTGTAATTACATATTCTTCTGAAACATTAAAATCTCACCTCCCTCTAAAGCCTGGAGCAGAAGTTACATTCCCTGTGACTTTGCGAGCCTGGCAGGTTGGTGTGGCAGACGCTGATAATACGAGGCACTCCAAAGATGCAAGTTGCCCATCACTATTGATACACTACGCCGGTCCACTGAAAACCTCTGAAGATCCAAACGCTGTATCCCCTGGTAGACGCCTTGTTGTCCCCCTGCAGATTTGTGTTTTGCAGGGTTTGTCTTTTGTGAAGGCTCAGCTGCTTTCAATGGAATTTCCTGCTCATGTTAGTGAAAATCTTCCTAAGTTGGACGATGTGAATAATAGTTCCAATGGAGGACATGTTAACTCAGAGTCAAAAATGGACAGATTGGTGAAAATAGATCCTTTCAGAGGAAGCTGGGGACTGCGTTTTCTTGAACTTGAGCTGTCTAATCCAACTGATGTTGTATTTGAAATCAACGTCTCTGTCAAACTGGAGAACAACAGTAACGAGGACAATCATTTAGCTGATCAGGATGGTACAGAATACGGCTATCCTGAAACAAGAATTGATAGAGATTGCTCAGCAAGGGTTCTTGTGCCTCTTGAGCATTTTAAATTACCCGTTCTTGATGATTCCTTTTTATCGAAGGATACTCATACAGATGGGATTGGTGGAGGAAGAAATTCACCATTCTCTGAAAAGAGCAGCAAAGCCGAACTCAATGCTTGCATCAAGAACCTTGTATCTAGGATTAAGGTTCAATGGCACTCGGGACGCAATAGCTCTGGAGAGTTAAATATCAAGGATGCTATCCAGGCTGCTCTACAGACATCAGTCATGGATGTATTGCTGCCAGATCCATTGACATTTGGCTTCAAGCTTGTTAGAGATGAATCTGATTCAGATAATCTTGATTCTGTTAAAGAATCTGATTTACCTGAATCCCCTGCTTCCAAAAGTTCCGTGCTTGCACATGAAGTGACACCAATGGTAGTTGTGGTCCGTAATAACACAAAGGATACAATCAAAATTAATCTTAACATTACATGCAGAGATGTAGCTGGGGAAAACTGTGTAGATGGTACCAAATCAACTGTTCTGTGGACCGGTGTCCTGAGCGAAATTACCGTTGAAATCCCCCCACTTCAGCAAATCAATCATTCTTTTTGCCTGCATTTCCTTGTCCCAGGAGAGTATACACTACTCGCCGCAGCAGTGATCGATGATGCAAATGACATCCTTCGGGCTCGTGCTAGGGCAACTTCAGCTGCCGAGCCAATTTTTTGCCGTGGACCACCATATCACCTTCGTGTCCTTGGGAATACATGA
Protein sequence

>Msa0006440

MEPEVSIEGSSTIQIAVIPIGQIPPPLLRDYYSLLLPLHTIPLSAISSFYTEHQKSPFTHQPWDSGSLRFKFVLGGATPSPWEDFQSHRKTLAVVGIVHCPSSLDLNDVVDQFASSCKSYPSSLVDRCFAFYPNDSQRGGNLKLFPPADRATLEFHLNTMMQEVAASLLMEFEKWVLQAESSGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELGRLTGDYFWYAGALEGSVCALLIDRMGQKDSVLEDEVRYRYNSVILNYKKSQDNTQRVSPITFELEATLKLARFLCRRELAKEVVELLTTAADGAKSLIDASDRLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSVSDHSIHNKGIGSDKPDDGKIYHQSVVSLFESQWSTIQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSSERLPPGTRCADPALPFIRVHSFPVHPTQMDIVKRNPAREDWWVGSAPSGPFIYTPFSKGDPNNIKKQELVWIVGEPIQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSISLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFKEVDNLLLGAAQGLVLSDPFRCCGSPKLKNVSVPSISVVPPLPLLISHVVGGDGAIILYEGEIRDVWISLANAGTVPIEQAHISLSGKNQDSVITYSSETLKSHLPLKPGAEVTFPVTLRAWQVGVADADNTRHSKDASCPSLLIHYAGPLKTSEDPNAVSPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHVSENLPKLDDVNNSSNGGHVNSESKMDRLVKIDPFRGSWGLRFLELELSNPTDVVFEINVSVKLENNSNEDNHLADQDGTEYGYPETRIDRDCSARVLVPLEHFKLPVLDDSFLSKDTHTDGIGGGRNSPFSEKSSKAELNACIKNLVSRIKVQWHSGRNSSGELNIKDAIQAALQTSVMDVLLPDPLTFGFKLVRDESDSDNLDSVKESDLPESPASKSSVLAHEVTPMVVVVRNNTKDTIKINLNITCRDVAGENCVDGTKSTVLWTGVLSEITVEIPPLQQINHSFCLHFLVPGEYTLLAAAVIDDANDILRARARATSAAEPIFCRGPPYHLRVLGNT*