Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006430 | sp|Q9LE16|BRX11_ARATH | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006410 | Msa0006430 | 0.833339 | 5.645131e-56 | -8.615850e-47 |
| Msa0006430 | Msa0006440 | 0.851600 | 7.985635e-61 | -8.615850e-47 |
| Msa0006430 | Msa0055050 | 0.811013 | 8.658051e-51 | -8.615850e-47 |
| Msa0006430 | Msa0510420 | 0.802363 | 5.812007e-49 | -8.615850e-47 |
| Msa0006430 | Msa1117560 | 0.840681 | 7.508853e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006430 | MtrunA17_Chr1g0149671 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| Msa0006430 | MtrunA17_Chr7g0242911 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006430 | AT3G15460.1 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| Msa0006430 | AT1G52930.1 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 99 sgRNAs with CRISPR-Local
Find 428 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATCCAATTAAAATATT+TGG | 0.145514 | 1_1:-9308658 | Msa0006430:CDS |
| TTTCTCTTCCCCATGTTATT+TGG | 0.215344 | 1_1:+9311991 | None:intergenic |
| AAAATATTTGGTGGCAGTTT+TGG | 0.230031 | 1_1:-9308646 | Msa0006430:CDS |
| ATCGCCGGCTATGGAGATTT+TGG | 0.262035 | 1_1:+9314700 | None:intergenic |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 1_1:-9309723 | Msa0006430:CDS |
| GCTCTAGGCGTATTGTTTAC+AGG | 0.279178 | 1_1:-9311792 | Msa0006430:intron |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 1_1:-9310391 | Msa0006430:CDS |
| ATATGTTCAATTGGAGATAT+AGG | 0.312402 | 1_1:-9308212 | Msa0006430:three_prime_UTR |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 1_1:-9311911 | Msa0006430:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 1_1:+9309710 | None:intergenic |
| TGGTTTGGCGACACGTATAA+TGG | 0.332505 | 1_1:+9308601 | None:intergenic |
| GCTGAAGGAGATGCTGTTAC+AGG | 0.334058 | 1_1:-9310296 | Msa0006430:intron |
| CTTACTGGGAACCACCTAAA+AGG | 0.340476 | 1_1:-9310376 | Msa0006430:CDS |
| AAACACAAACCTGGTAATTT+CGG | 0.347713 | 1_1:+9309698 | None:intergenic |
| TGAGAATGAAGTTGAAGTTA+AGG | 0.350478 | 1_1:-9311866 | Msa0006430:CDS |
| TCTTCGGTTGTTACCTGGTT+TGG | 0.354472 | 1_1:+9308586 | None:intergenic |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 1_1:+9311829 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 1_1:-9311840 | Msa0006430:CDS |
| GGAAAGGCTTGGCCTTTCTA+TGG | 0.363818 | 1_1:+9309767 | None:intergenic |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 1_1:-9311259 | Msa0006430:CDS |
| GTCGGCAGTCCATTCTTCAT+AGG | 0.381731 | 1_1:-9308261 | Msa0006430:three_prime_UTR |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 1_1:+9311916 | None:intergenic |
| AATTTAACAGACGGGCCGTT+GGG | 0.387269 | 1_1:+9310616 | None:intergenic |
| CACATATCTGCGAACTCGTC+AGG | 0.394150 | 1_1:+9308373 | None:intergenic |
| AATTGCTTTATATGTTCAAT+TGG | 0.400358 | 1_1:-9308221 | Msa0006430:three_prime_UTR |
| CCGACATTTGATGTTGAACT+TGG | 0.401652 | 1_1:-9311286 | Msa0006430:CDS |
| AGCTTTGCAGAAGAAGAAAA+AGG | 0.403828 | 1_1:-9308467 | Msa0006430:CDS |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 1_1:-9311821 | Msa0006430:CDS |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 1_1:-9311950 | Msa0006430:CDS |
| GGCTGGAACGTTTGCAAAGA+AGG | 0.416450 | 1_1:-9308446 | Msa0006430:CDS |
| TTGGCCTTTCTATGGTCCTT+CGG | 0.429083 | 1_1:+9309775 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 1_1:+9311200 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 1_1:+9311896 | None:intergenic |
| TCGGCAGTCCATTCTTCATA+GGG | 0.457995 | 1_1:-9308260 | Msa0006430:three_prime_UTR |
| GCATGAGATGGCCAATCCTC+TGG | 0.459429 | 1_1:-9308398 | Msa0006430:CDS |
| ATCATAGTATCATAGTTTGA+TGG | 0.462877 | 1_1:+9308167 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 1_1:-9310651 | Msa0006430:CDS |
| TGGAAAACGGAAAGCAAAGA+AGG | 0.473715 | 1_1:+9314733 | None:intergenic |
| GGTTGAATCGAAAGAAACTA+AGG | 0.485204 | 1_1:-9311229 | Msa0006430:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.486922 | 1_1:+9310346 | None:intergenic |
| CTCGTCAGGTTCCAGAGGAT+TGG | 0.494627 | 1_1:+9308387 | None:intergenic |
| AATCCAATTAAAATATTTGG+TGG | 0.497076 | 1_1:-9308655 | Msa0006430:CDS |
| TGGTGGCGATGAATGGAAAA+CGG | 0.505884 | 1_1:+9314720 | None:intergenic |
| TGATTTGTAGCCAAATAACA+TGG | 0.511138 | 1_1:-9312001 | Msa0006430:intron |
| AGGTTGATAATCGCCGGCTA+TGG | 0.512620 | 1_1:+9314691 | None:intergenic |
| ATTGCAGAGGAAGGAGGTGA+AGG | 0.516014 | 1_1:+9314671 | None:intergenic |
| AAATTTAACAGACGGGCCGT+TGG | 0.517299 | 1_1:+9310615 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 1_1:-9309707 | Msa0006430:intron |
| ATTATACGTGTCGCCAAACC+AGG | 0.521192 | 1_1:-9308599 | Msa0006430:intron |
| ATGGATTCTCATATAAAGTC+GGG | 0.523055 | 1_1:+9308620 | None:intergenic |
| GAAGTTGAAGTTAAGGAGAA+TGG | 0.527506 | 1_1:-9311859 | Msa0006430:CDS |
| CACTTTATATTCGACACGAA+TGG | 0.528618 | 1_1:-9308293 | Msa0006430:three_prime_UTR |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 1_1:+9311897 | None:intergenic |
| TATATAGTACAAGGCAGGGT+AGG | 0.531962 | 1_1:+9308067 | None:intergenic |
| TCATAGTATCATAGTTTGAT+GGG | 0.532574 | 1_1:+9308168 | None:intergenic |
| TGATAAAATGACATTGATTG+AGG | 0.544457 | 1_1:-9308782 | Msa0006430:intron |
| ATGAAAATGTCAAAAGAGGA+CGG | 0.546674 | 1_1:+9310350 | None:intergenic |
| CTGACGAGTTCGCAGATATG+TGG | 0.547350 | 1_1:-9308372 | Msa0006430:CDS |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 1_1:+9311907 | None:intergenic |
| AATGGATTCTCATATAAAGT+CGG | 0.552929 | 1_1:+9308619 | None:intergenic |
| GTGGGAAAATTTAATTGCCG+TGG | 0.554020 | 1_1:+9307931 | None:intergenic |
| TGGAGGAATTGAAGCTTACT+GGG | 0.555656 | 1_1:-9310390 | Msa0006430:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 1_1:-9311977 | Msa0006430:CDS |
| GCCACCAAAATCTCCATAGC+CGG | 0.562885 | 1_1:-9314704 | Msa0006430:five_prime_UTR |
| ACCTAGGTGATTGCAGAGGA+AGG | 0.568891 | 1_1:+9314662 | None:intergenic |
| AGGTGAAGGTTGATAATCGC+CGG | 0.568917 | 1_1:+9314685 | None:intergenic |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 1_1:-9310647 | Msa0006430:CDS |
| TGAAAATGTCAAAAGAGGAC+GGG | 0.576450 | 1_1:+9310351 | None:intergenic |
| ATTTAACAGACGGGCCGTTG+GGG | 0.581078 | 1_1:+9310617 | None:intergenic |
| AAAATATATAGTACAAGGCA+GGG | 0.585375 | 1_1:+9308063 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 1_1:-9308410 | Msa0006430:CDS |
| AACACCGAAGGACCATAGAA+AGG | 0.600443 | 1_1:-9309779 | Msa0006430:CDS |
| AACATGGTCATGGAAAGGCT+TGG | 0.604292 | 1_1:+9309756 | None:intergenic |
| GATTTGTAGCCAAATAACAT+GGG | 0.607660 | 1_1:-9312000 | Msa0006430:intron |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 1_1:-9311965 | Msa0006430:CDS |
| TGCATACTGGAAATTGCTGA+AGG | 0.612381 | 1_1:-9310311 | Msa0006430:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 1_1:-9308429 | Msa0006430:CDS |
| TACATGTTTAGGTTGGTCCA+CGG | 0.617665 | 1_1:-9308687 | Msa0006430:intron |
| TGGATGGCAAAATGCCCCAA+CGG | 0.618112 | 1_1:-9310631 | Msa0006430:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 1_1:+9308820 | None:intergenic |
| GTTGAATCGAAAGAAACTAA+GGG | 0.624547 | 1_1:-9311228 | Msa0006430:CDS |
| CTGCTTTCCAGTGCACACAA+TGG | 0.626669 | 1_1:-9310410 | Msa0006430:intron |
| GGAAAACGGAAAGCAAAGAA+GGG | 0.627545 | 1_1:+9314734 | None:intergenic |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 1_1:+9308670 | None:intergenic |
| CTTTCCAGTGCACACAATGG+AGG | 0.635931 | 1_1:-9310407 | Msa0006430:intron |
| ATTTCTATGATATTATTGTG+AGG | 0.636282 | 1_1:+9308019 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 1_1:-9308426 | Msa0006430:CDS |
| GCGAACTCGTCAGGTTCCAG+AGG | 0.642544 | 1_1:+9308382 | None:intergenic |
| CCAAGTTCAACATCAAATGT+CGG | 0.645758 | 1_1:+9311286 | None:intergenic |
| ATTTGTAGCCAAATAACATG+GGG | 0.646994 | 1_1:-9311999 | Msa0006430:intron |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.659681 | 1_1:-9310671 | Msa0006430:intron |
| CGGCAGTCCATTCTTCATAG+GGG | 0.663940 | 1_1:-9308259 | Msa0006430:three_prime_UTR |
| TCCTTCCTCTGCAATCACCT+AGG | 0.668735 | 1_1:-9314663 | Msa0006430:intron |
| CCAGATATTTGAAACACCGA+AGG | 0.677611 | 1_1:-9309791 | Msa0006430:intron |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 1_1:+9311203 | None:intergenic |
| TAGGTGATTGCAGAGGAAGG+AGG | 0.689100 | 1_1:+9314665 | None:intergenic |
| AGGTACCTAGGTGATTGCAG+AGG | 0.693878 | 1_1:+9314658 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 1_1:-9311921 | Msa0006430:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 1_1:-9308811 | Msa0006430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTAGGATTTTAAT+TGG | - | chr1_1:9308716-9308735 | Msa0006430:intron | 10.0% |
| !! | TTATTTAGTAACTTATAATT+AGG | + | chr1_1:9309293-9309312 | None:intergenic | 10.0% |
| !! | ATAAGTTACTAAATAATTAT+AGG | - | chr1_1:9309297-9309316 | Msa0006430:intron | 10.0% |
| !!! | ATGTTATTTTGAACAAAAAA+TGG | - | chr1_1:9308178-9308197 | Msa0006430:three_prime_UTR | 15.0% |
| !! | TTAAGATAACATATATAAAC+AGG | + | chr1_1:9310170-9310189 | None:intergenic | 15.0% |
| !! | GTGAATAAAAATTAAACTTT+GGG | + | chr1_1:9310471-9310490 | None:intergenic | 15.0% |
| !! | AGTGAATAAAAATTAAACTT+TGG | + | chr1_1:9310472-9310491 | None:intergenic | 15.0% |
| !! | AAATACAGCAAAATATATTT+GGG | + | chr1_1:9310916-9310935 | None:intergenic | 15.0% |
| !! | CATTATTTATATTTATCTAC+TGG | + | chr1_1:9311218-9311237 | None:intergenic | 15.0% |
| !!! | AGTTTATTAGTTTTTGAATA+TGG | - | chr1_1:9311333-9311352 | Msa0006430:intron | 15.0% |
| !!! | TATTATTTTTTATGACATCA+AGG | - | chr1_1:9311522-9311541 | Msa0006430:intron | 15.0% |
| !! | AATACTATATAATCATAACA+AGG | + | chr1_1:9312142-9312161 | None:intergenic | 15.0% |
| !! | TTATGATTATATAGTATTCT+AGG | - | chr1_1:9312144-9312163 | Msa0006430:intron | 15.0% |
| !! | AATTTAAATTGAGTAGAATT+TGG | - | chr1_1:9312667-9312686 | Msa0006430:intron | 15.0% |
| !! | ATTTAAATTGAGTAGAATTT+GGG | - | chr1_1:9312668-9312687 | Msa0006430:intron | 15.0% |
| !! | ATAATAATAATAGTATCATG+TGG | + | chr1_1:9313456-9313475 | None:intergenic | 15.0% |
| !! | TTGAATCCAATTAAAATATT+TGG | - | chr1_1:9314010-9314029 | Msa0006430:intron | 15.0% |
| !!! | CATTCAATCATATTTTAATA+TGG | + | chr1_1:9314700-9314719 | None:intergenic | 15.0% |
| !!! | TATATGTAAATATTTTACCA+CGG | - | chr1_1:9314720-9314739 | Msa0006430:five_prime_UTR | 15.0% |
| !! | AATATTTGGACTGTTTATAA+TGG | - | chr1_1:9308401-9308420 | Msa0006430:CDS | 20.0% |
| !! | CTATCAAGCATTAAATTTAA+TGG | + | chr1_1:9308570-9308589 | None:intergenic | 20.0% |
| !! | TAAATTTAATGCTTGATAGA+TGG | - | chr1_1:9308571-9308590 | Msa0006430:intron | 20.0% |
| !!! | ATCTGAAATTTAGTTAGTTT+AGG | - | chr1_1:9308663-9308682 | Msa0006430:CDS | 20.0% |
| !! | GTCTAGTAAAGAATTTAATT+AGG | - | chr1_1:9308705-9308724 | Msa0006430:intron | 20.0% |
| !! | TTAATTGGTTGCAATAAAAA+AGG | - | chr1_1:9308731-9308750 | Msa0006430:intron | 20.0% |
| !! | GATTAGGAAAAAAAGTAAAA+AGG | - | chr1_1:9308753-9308772 | Msa0006430:intron | 20.0% |
| !! | GAAAGCAATTATTAATTGAT+TGG | - | chr1_1:9308848-9308867 | Msa0006430:intron | 20.0% |
| !!! | AGTTATTGATTGATTATGAA+AGG | + | chr1_1:9309214-9309233 | None:intergenic | 20.0% |
| !! | TTACTAAATAATTATAGGAC+TGG | - | chr1_1:9309302-9309321 | Msa0006430:intron | 20.0% |
| !! | TCTATACTAAATCATGTATA+TGG | - | chr1_1:9309734-9309753 | Msa0006430:CDS | 20.0% |
| !! | CTATACTAAATCATGTATAT+GGG | - | chr1_1:9309735-9309754 | Msa0006430:CDS | 20.0% |
| !!! | TATGTAAATTTCATGTCTTT+TGG | - | chr1_1:9310092-9310111 | Msa0006430:intron | 20.0% |
| !! | ATATGTTATCTTAATCATCA+TGG | - | chr1_1:9310176-9310195 | Msa0006430:intron | 20.0% |
| !!! | TTAAATCTTATCTTTTTCCA+TGG | + | chr1_1:9310274-9310293 | None:intergenic | 20.0% |
| !! | TTTGAGAACTTATGAAAATA+AGG | - | chr1_1:9310339-9310358 | Msa0006430:CDS | 20.0% |
| !! | TAACTGATAGAACATTAAAA+AGG | + | chr1_1:9310565-9310584 | None:intergenic | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | + | chr1_1:9310917-9310936 | None:intergenic | 20.0% |
| !! | CAGATTAAATTAATGTCAAA+TGG | - | chr1_1:9311062-9311081 | Msa0006430:intron | 20.0% |
| !! | ATTGATCATAAACTTATTAC+AGG | - | chr1_1:9311357-9311376 | Msa0006430:intron | 20.0% |
| !! | GAAAATTCATTGTTTGTTTA+TGG | - | chr1_1:9311604-9311623 | Msa0006430:intron | 20.0% |
| !!! | CGACACTTTAAAATTTAAAA+TGG | + | chr1_1:9311787-9311806 | None:intergenic | 20.0% |
| !! | ATACATAGAAAAACCAATTT+GGG | + | chr1_1:9311836-9311855 | None:intergenic | 20.0% |
| !! | AATACATAGAAAAACCAATT+TGG | + | chr1_1:9311837-9311856 | None:intergenic | 20.0% |
| !!! | CAGTTTACTTATTTTAAATC+TGG | - | chr1_1:9311861-9311880 | Msa0006430:CDS | 20.0% |
| !! | TAACTAAAAATTTAACAGAC+GGG | + | chr1_1:9312063-9312082 | None:intergenic | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | + | chr1_1:9312064-9312083 | None:intergenic | 20.0% |
| !! | TATAATCATAACAAGGAAAT+TGG | + | chr1_1:9312135-9312154 | None:intergenic | 20.0% |
| !! | TAAAAAATAGAATTCAGAAC+TGG | + | chr1_1:9312179-9312198 | None:intergenic | 20.0% |
| !! | TAAAAGAGAAACTAGTAAAA+TGG | + | chr1_1:9312232-9312251 | None:intergenic | 20.0% |
| !! | AAGTCTATAAATGTTATGTT+TGG | - | chr1_1:9312627-9312646 | Msa0006430:intron | 20.0% |
| !!! | TATAATTATGCCAATTGTTT+TGG | - | chr1_1:9313132-9313151 | Msa0006430:intron | 20.0% |
| !! | TTCACTCAATTCAAAAATTA+TGG | + | chr1_1:9313162-9313181 | None:intergenic | 20.0% |
| !!! | TCATGATATCATATTTCTAT+TGG | + | chr1_1:9313320-9313339 | None:intergenic | 20.0% |
| !!! | GTAATATGATTGTTTTACTA+TGG | - | chr1_1:9313396-9313415 | Msa0006430:intron | 20.0% |
| !! | AATCCAATTAAAATATTTGG+TGG | - | chr1_1:9314013-9314032 | Msa0006430:intron | 20.0% |
| !! | ACTCAAAAATAACTACATAT+TGG | - | chr1_1:9314142-9314161 | Msa0006430:intron | 20.0% |
| !!! | TTCTTAATTTTAGAGAAAAG+AGG | + | chr1_1:9314346-9314365 | None:intergenic | 20.0% |
| !!! | CTTTTCTCTAAAATTAAGAA+TGG | - | chr1_1:9314346-9314365 | Msa0006430:intron | 20.0% |
| !! | AATTGCTTTATATGTTCAAT+TGG | - | chr1_1:9314447-9314466 | Msa0006430:intron | 20.0% |
| !!! | TTTCTTTACTATTGTTTTTC+TGG | - | chr1_1:9314569-9314588 | Msa0006430:intron | 20.0% |
| !! | TAGCAAAAATATATAGTACA+AGG | + | chr1_1:9314613-9314632 | None:intergenic | 20.0% |
| !! | ATTTCTATGATATTATTGTG+AGG | + | chr1_1:9314652-9314671 | None:intergenic | 20.0% |
| ! | TCTTAACTGAAGAAATCAAA+TGG | - | chr1_1:9308143-9308162 | Msa0006430:intron | 25.0% |
| ! | CTTAACTGAAGAAATCAAAT+GGG | - | chr1_1:9308144-9308163 | Msa0006430:intron | 25.0% |
| !!! | CATATTCTCTGTTCATTTTT+TGG | + | chr1_1:9308377-9308396 | None:intergenic | 25.0% |
| ! | AGAGAATATGTCGTAATATT+TGG | - | chr1_1:9308387-9308406 | Msa0006430:CDS | 25.0% |
| ! | TAATGGAATTCTTATTCTTG+TGG | - | chr1_1:9308418-9308437 | Msa0006430:CDS | 25.0% |
| ! | AATGGAATTCTTATTCTTGT+GGG | - | chr1_1:9308419-9308438 | Msa0006430:CDS | 25.0% |
| ! | AGATGTCCTAAATTATATGT+GGG | + | chr1_1:9308647-9308666 | None:intergenic | 25.0% |
| !! | TTAGTTTAGGTTTCTGATTA+AGG | - | chr1_1:9308676-9308695 | Msa0006430:CDS | 25.0% |
| !! | TAGTTTAGGTTTCTGATTAA+GGG | - | chr1_1:9308677-9308696 | Msa0006430:CDS | 25.0% |
| !!! | CTTTTCATTGATTACACTTA+AGG | + | chr1_1:9308892-9308911 | None:intergenic | 25.0% |
| ! | AAGTGTAATCAATGAAAAGT+TGG | - | chr1_1:9308893-9308912 | Msa0006430:intron | 25.0% |
| ! | AGTGTAATCAATGAAAAGTT+GGG | - | chr1_1:9308894-9308913 | Msa0006430:intron | 25.0% |
| ! | TATTAGAATGCACTATGTAT+AGG | + | chr1_1:9309036-9309055 | None:intergenic | 25.0% |
| ! | TACATAGTGCATTCTAATAT+AGG | - | chr1_1:9309037-9309056 | Msa0006430:intron | 25.0% |
| ! | ATTGATTGATTATGAAAGGA+AGG | + | chr1_1:9309210-9309229 | None:intergenic | 25.0% |
| ! | TACAAGATGGTAATTAGTAT+AGG | + | chr1_1:9309371-9309390 | None:intergenic | 25.0% |
| ! | ATACTAATTACCATCTTGTA+AGG | - | chr1_1:9309371-9309390 | Msa0006430:intron | 25.0% |
| ! | TCATTTATTCAACTTCAACT+TGG | + | chr1_1:9309418-9309437 | None:intergenic | 25.0% |
| ! | TTTACTAAATGATGATTCCA+CGG | - | chr1_1:9309708-9309727 | Msa0006430:CDS | 25.0% |
| !!! | AATTTTGTTTATCACTCTCT+GGG | + | chr1_1:9309929-9309948 | None:intergenic | 25.0% |
| !!! | TAATTTTGTTTATCACTCTC+TGG | + | chr1_1:9309930-9309949 | None:intergenic | 25.0% |
| ! | GTAATAACTCTTTACACTAA+CGG | - | chr1_1:9310600-9310619 | Msa0006430:intron | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | + | chr1_1:9310908-9310927 | None:intergenic | 25.0% |
| !!! | GAGTTTGGATTTGTTTATTT+TGG | - | chr1_1:9310956-9310975 | Msa0006430:intron | 25.0% |
| ! | AACAACTTAACTAAGTTGTT+AGG | + | chr1_1:9310991-9311010 | None:intergenic | 25.0% |
| !! | AGTTAAGTTGTTATGTTGTA+AGG | - | chr1_1:9310999-9311018 | Msa0006430:intron | 25.0% |
| !! | GTTAAGTTGTTATGTTGTAA+GGG | - | chr1_1:9311000-9311019 | Msa0006430:intron | 25.0% |
| ! | GTTGTATTCATAAACTATCT+TGG | - | chr1_1:9311103-9311122 | Msa0006430:intron | 25.0% |
| ! | AGGAAACTGAAAATAGTTTA+TGG | - | chr1_1:9311137-9311156 | Msa0006430:intron | 25.0% |
| ! | AACTAATAAACTGCAATAAC+AGG | + | chr1_1:9311325-9311344 | None:intergenic | 25.0% |
| !!! | TTCTTCGTGTTTATTTTTTG+AGG | - | chr1_1:9311499-9311518 | Msa0006430:intron | 25.0% |
| ! | CTAATGCAAAATGTTATTGT+TGG | - | chr1_1:9311683-9311702 | Msa0006430:intron | 25.0% |
| ! | TCTATTCTATTTGTGACATT+TGG | - | chr1_1:9311947-9311966 | Msa0006430:CDS | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | - | chr1_1:9312067-9312086 | Msa0006430:intron | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | + | chr1_1:9312325-9312344 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | - | chr1_1:9312344-9312363 | Msa0006430:intron | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | - | chr1_1:9312423-9312442 | Msa0006430:intron | 25.0% |
| ! | TCAATAAAACCATCTTAGTT+TGG | - | chr1_1:9312451-9312470 | Msa0006430:intron | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | - | chr1_1:9312740-9312759 | Msa0006430:intron | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | - | chr1_1:9312741-9312760 | Msa0006430:intron | 25.0% |
| ! | CAATTGAGAAAACAAAAACA+TGG | + | chr1_1:9312931-9312950 | None:intergenic | 25.0% |
| ! | TTGCAAAGGATCTAAATAAT+TGG | - | chr1_1:9312997-9313016 | Msa0006430:intron | 25.0% |
| !!! | GTTGATAGTATATAAGGTTT+TGG | + | chr1_1:9313370-9313389 | None:intergenic | 25.0% |
| !!! | TTCTTCGTTGATAGTATATA+AGG | + | chr1_1:9313376-9313395 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACTATGGTTACA+TGG | - | chr1_1:9313404-9313423 | Msa0006430:intron | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | - | chr1_1:9313642-9313661 | Msa0006430:intron | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | + | chr1_1:9313649-9313668 | None:intergenic | 25.0% |
| !!! | TAAACAATGCTATTTTATGC+TGG | - | chr1_1:9313697-9313716 | Msa0006430:intron | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | + | chr1_1:9313886-9313905 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | - | chr1_1:9313886-9313905 | Msa0006430:intron | 25.0% |
| !! | ACATCAGTTAAACGAATTTT+AGG | + | chr1_1:9313953-9313972 | None:intergenic | 25.0% |
| !! | AATGGATTCTCATATAAAGT+CGG | + | chr1_1:9314052-9314071 | None:intergenic | 25.0% |
| !!! | TTAATTTTAGAGAAAAGAGG+CGG | + | chr1_1:9314343-9314362 | None:intergenic | 25.0% |
| ! | ATATGTTCAATTGGAGATAT+AGG | - | chr1_1:9314456-9314475 | Msa0006430:intron | 25.0% |
| ! | TCATAGTATCATAGTTTGAT+GGG | + | chr1_1:9314503-9314522 | None:intergenic | 25.0% |
| ! | ATCATAGTATCATAGTTTGA+TGG | + | chr1_1:9314504-9314523 | None:intergenic | 25.0% |
| ! | AAAATATATAGTACAAGGCA+GGG | + | chr1_1:9314608-9314627 | None:intergenic | 25.0% |
| ! | AAAAATATATAGTACAAGGC+AGG | + | chr1_1:9314609-9314628 | None:intergenic | 25.0% |
| ATAAGAGAGAAAACAGATGT+CGG | + | chr1_1:9308044-9308063 | None:intergenic | 30.0% | |
| ATACATACATACAGTAACAG+CGG | + | chr1_1:9308111-9308130 | None:intergenic | 30.0% | |
| ! | GGCAAATTTTTGTAGCTAAA+TGG | - | chr1_1:9308199-9308218 | Msa0006430:three_prime_UTR | 30.0% |
| ACATTAGATAAAACCCTGTT+TGG | - | chr1_1:9308242-9308261 | Msa0006430:three_prime_UTR | 30.0% | |
| CATTAGATAAAACCCTGTTT+GGG | - | chr1_1:9308243-9308262 | Msa0006430:three_prime_UTR | 30.0% | |
| ATGGAATTCTTATTCTTGTG+GGG | - | chr1_1:9308420-9308439 | Msa0006430:CDS | 30.0% | |
| TCCTAAATTATATGTGGGTT+GGG | + | chr1_1:9308642-9308661 | None:intergenic | 30.0% | |
| CAGATGTCCTAAATTATATG+TGG | + | chr1_1:9308648-9308667 | None:intergenic | 30.0% | |
| GGTTGCAATAAAAAAGGATT+AGG | - | chr1_1:9308737-9308756 | Msa0006430:intron | 30.0% | |
| GTGTAATCAATGAAAAGTTG+GGG | - | chr1_1:9308895-9308914 | Msa0006430:intron | 30.0% | |
| AGAAAGAAAGTCCAAATAGT+TGG | - | chr1_1:9308971-9308990 | Msa0006430:intron | 30.0% | |
| !!! | GTTAGTTTTCTCCAACTATT+TGG | + | chr1_1:9308985-9309004 | None:intergenic | 30.0% |
| TAGTTGGAGAAAACTAACTA+AGG | - | chr1_1:9308987-9309006 | Msa0006430:intron | 30.0% | |
| !!! | TAGGATAGATCTGTTTTTGA+AGG | + | chr1_1:9309017-9309036 | None:intergenic | 30.0% |
| ATTGATTATGAAAGGAAGGA+AGG | + | chr1_1:9309206-9309225 | None:intergenic | 30.0% | |
| ACAACATGTACACTAGAAAA+GGG | + | chr1_1:9309258-9309277 | None:intergenic | 30.0% | |
| ! | CGAATTGTCTTTTGGTAAAA+TGG | + | chr1_1:9309487-9309506 | None:intergenic | 30.0% |
| ! | CCAATTGTCTTTTGGTAAAA+TGG | + | chr1_1:9309579-9309598 | None:intergenic | 30.0% |
| ! | CCATTTTACCAAAAGACAAT+TGG | - | chr1_1:9309484-9309503 | Msa0006430:intron | 30.0% |
| TACCAAAAGACAATTGGTTA+AGG | - | chr1_1:9309582-9309601 | Msa0006430:intron | 30.0% | |
| GGAATCATCATTTAGTAAAG+AGG | + | chr1_1:9309707-9309726 | None:intergenic | 30.0% | |
| ACTAAATCATGTATATGGGA+TGG | - | chr1_1:9309739-9309758 | Msa0006430:CDS | 30.0% | |
| ! | GAGAAAGTGTAGGAAAATAA+AGG | - | chr1_1:9309879-9309898 | Msa0006430:intron | 30.0% |
| GTGTAGGAAAATAAAGGAAA+AGG | - | chr1_1:9309885-9309904 | Msa0006430:intron | 30.0% | |
| TTCTACAATCATGACATAAG+TGG | + | chr1_1:9309982-9310001 | None:intergenic | 30.0% | |
| ! | AATTTCATGTCTTTTGGTAG+TGG | - | chr1_1:9310098-9310117 | Msa0006430:intron | 30.0% |
| !! | ATTTCATGTCTTTTGGTAGT+GGG | - | chr1_1:9310099-9310118 | Msa0006430:intron | 30.0% |
| TGATGTCTGATTGAACTTAT+TGG | - | chr1_1:9310201-9310220 | Msa0006430:intron | 30.0% | |
| AAATTAAACTTTGGGTCGTT+TGG | + | chr1_1:9310463-9310482 | None:intergenic | 30.0% | |
| ! | TGATTTGTAGCCAAATAACA+TGG | - | chr1_1:9310667-9310686 | Msa0006430:intron | 30.0% |
| GATTTGTAGCCAAATAACAT+GGG | - | chr1_1:9310668-9310687 | Msa0006430:intron | 30.0% | |
| ATTTGTAGCCAAATAACATG+GGG | - | chr1_1:9310669-9310688 | Msa0006430:intron | 30.0% | |
| TGAGAATGAAGTTGAAGTTA+AGG | - | chr1_1:9310802-9310821 | Msa0006430:intron | 30.0% | |
| AAACTATCTTGGAGAACTTA+TGG | - | chr1_1:9311114-9311133 | Msa0006430:intron | 30.0% | |
| ! | TTGTTATCCTTTTTGCAATG+AGG | + | chr1_1:9311419-9311438 | None:intergenic | 30.0% |
| TCATTGCAAAAAGGATAACA+AGG | - | chr1_1:9311418-9311437 | Msa0006430:intron | 30.0% | |
| GTTGAATCGAAAGAAACTAA+GGG | - | chr1_1:9311440-9311459 | Msa0006430:intron | 30.0% | |
| !!! | ATCTCTTTCCTTTTTTGTGA+TGG | - | chr1_1:9311721-9311740 | Msa0006430:intron | 30.0% |
| ATAGAAAAACCAATTTGGGA+GGG | + | chr1_1:9311832-9311851 | None:intergenic | 30.0% | |
| ! | TTTTCCATTTAATCTCGAGT+TGG | - | chr1_1:9311898-9311917 | Msa0006430:CDS | 30.0% |
| AAAAGATCTTTATCTCTGGA+TGG | - | chr1_1:9312021-9312040 | Msa0006430:intron | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | + | chr1_1:9312089-9312108 | None:intergenic | 30.0% | |
| !! | CTCATCTGTTTGTTATCTTA+AGG | - | chr1_1:9312097-9312116 | Msa0006430:intron | 30.0% |
| ATGAAAATGTCAAAAGAGGA+CGG | + | chr1_1:9312321-9312340 | None:intergenic | 30.0% | |
| ! | ATAAAACCATCTTAGTTTGG+TGG | - | chr1_1:9312454-9312473 | Msa0006430:intron | 30.0% |
| TTATAGACTTCTCAAGTCAA+CGG | + | chr1_1:9312617-9312636 | None:intergenic | 30.0% | |
| !! | TTCACAATTTTCTCTGGTTT+TGG | - | chr1_1:9312708-9312727 | Msa0006430:intron | 30.0% |
| CCTATTCAAATACATAACTC+AGG | + | chr1_1:9312742-9312761 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | - | chr1_1:9312739-9312758 | Msa0006430:intron | 30.0% | |
| !!! | GTGCTTTTTTCTTTCTTTCT+TGG | - | chr1_1:9312790-9312809 | Msa0006430:intron | 30.0% |
| AGAAAACAAAAACATGGTCA+TGG | + | chr1_1:9312925-9312944 | None:intergenic | 30.0% | |
| !! | CAATTGTTGATGACCATATA+TGG | - | chr1_1:9312945-9312964 | Msa0006430:intron | 30.0% |
| AAACACAAACCTGGTAATTT+CGG | + | chr1_1:9312973-9312992 | None:intergenic | 30.0% | |
| ! | GTTTGTGTTTTCATTTGCAA+AGG | - | chr1_1:9312983-9313002 | Msa0006430:intron | 30.0% |
| GTTTAAACTTCAAAATCCGT+TGG | - | chr1_1:9313054-9313073 | Msa0006430:intron | 30.0% | |
| TGTTGAAAACAACAAACCAA+CGG | + | chr1_1:9313073-9313092 | None:intergenic | 30.0% | |
| TTATGGCTAACCAAAACAAT+TGG | + | chr1_1:9313145-9313164 | None:intergenic | 30.0% | |
| ! | AACATTGCTGATGGATAAAT+TGG | - | chr1_1:9313219-9313238 | Msa0006430:intron | 30.0% |
| ! | ACATTGCTGATGGATAAATT+GGG | - | chr1_1:9313220-9313239 | Msa0006430:intron | 30.0% |
| ! | GTTGACTTATGCAAAGAAAA+TGG | - | chr1_1:9313578-9313597 | Msa0006430:intron | 30.0% |
| TCTGCATGAGAATAAAAATG+TGG | + | chr1_1:9313820-9313839 | None:intergenic | 30.0% | |
| !!! | CTGCCACCAAATATTTTAAT+TGG | + | chr1_1:9314019-9314038 | None:intergenic | 30.0% |
| !! | AAAATATTTGGTGGCAGTTT+TGG | - | chr1_1:9314022-9314041 | Msa0006430:intron | 30.0% |
| ATGGATTCTCATATAAAGTC+GGG | + | chr1_1:9314051-9314070 | None:intergenic | 30.0% | |
| GGATCTACAACAACATAAAA+AGG | + | chr1_1:9314180-9314199 | None:intergenic | 30.0% | |
| TAAGAGAGAAAACAGATGTC+GGG | + | chr1_1:9308043-9308062 | None:intergenic | 35.0% | |
| ATAAGCAGTTTACCCAAACA+GGG | + | chr1_1:9308258-9308277 | None:intergenic | 35.0% | |
| AATAAGCAGTTTACCCAAAC+AGG | + | chr1_1:9308259-9308278 | None:intergenic | 35.0% | |
| ATGGCCAGTTAATGTATCTA+TGG | - | chr1_1:9308457-9308476 | Msa0006430:CDS | 35.0% | |
| CCAACCATAGATACATTAAC+TGG | + | chr1_1:9308464-9308483 | None:intergenic | 35.0% | |
| CCAGTTAATGTATCTATGGT+TGG | - | chr1_1:9308461-9308480 | Msa0006430:CDS | 35.0% | |
| TACTCATCAGGCTAAACTTT+AGG | + | chr1_1:9308500-9308519 | None:intergenic | 35.0% | |
| AAACAACACAACTACTCATC+AGG | + | chr1_1:9308512-9308531 | None:intergenic | 35.0% | |
| GTTACTGGATACATTTGGAT+TGG | + | chr1_1:9308535-9308554 | None:intergenic | 35.0% | |
| CCTTTGTTACTGGATACATT+TGG | + | chr1_1:9308540-9308559 | None:intergenic | 35.0% | |
| CCAAATGTATCCAGTAACAA+AGG | - | chr1_1:9308537-9308556 | Msa0006430:intron | 35.0% | |
| ! | GAACTCTGGAGAATATTTCA+AGG | - | chr1_1:9308597-9308616 | Msa0006430:intron | 35.0% |
| GTCCTAAATTATATGTGGGT+TGG | + | chr1_1:9308643-9308662 | None:intergenic | 35.0% | |
| TATAACTTGGACTTAAGTCG+TGG | + | chr1_1:9308931-9308950 | None:intergenic | 35.0% | |
| TGGAGAAAACTAACTAAGGA+AGG | - | chr1_1:9308991-9309010 | Msa0006430:intron | 35.0% | |
| GAAACAGGTAAAGAGATAGA+GGG | + | chr1_1:9309095-9309114 | None:intergenic | 35.0% | |
| TGAAACAGGTAAAGAGATAG+AGG | + | chr1_1:9309096-9309115 | None:intergenic | 35.0% | |
| TGAGGAATGTGAATACAAGA+TGG | - | chr1_1:9309136-9309155 | Msa0006430:intron | 35.0% | |
| GACAACATGTACACTAGAAA+AGG | + | chr1_1:9309259-9309278 | None:intergenic | 35.0% | |
| ATTCAACTTCAACTTGGCAA+TGG | + | chr1_1:9309412-9309431 | None:intergenic | 35.0% | |
| AAGCAGAAGCTAGAAGATTA+AGG | + | chr1_1:9309451-9309470 | None:intergenic | 35.0% | |
| !! | TTAATCTTCTAGCTTCTGCT+TGG | - | chr1_1:9309450-9309469 | Msa0006430:intron | 35.0% |
| ACCAAAAGACAATTCGTTCA+AGG | - | chr1_1:9309491-9309510 | Msa0006430:intron | 35.0% | |
| AAGCAGAAGATAGGAGATTA+AGG | + | chr1_1:9309543-9309562 | None:intergenic | 35.0% | |
| TTAATCTCCTATCTTCTGCT+TGG | - | chr1_1:9309542-9309561 | Msa0006430:intron | 35.0% | |
| TAGAATTCCAAGCAGAAGAT+AGG | + | chr1_1:9309552-9309571 | None:intergenic | 35.0% | |
| ! | TGCCTTAACCAATTGTCTTT+TGG | + | chr1_1:9309587-9309606 | None:intergenic | 35.0% |
| TGATTTAGTATAGAGAACCG+TGG | + | chr1_1:9309728-9309747 | None:intergenic | 35.0% | |
| !!! | TTTCATGTCTTTTGGTAGTG+GGG | - | chr1_1:9310100-9310119 | Msa0006430:intron | 35.0% |
| ! | CAATGTGTAAGCTATTTCCA+TGG | - | chr1_1:9310254-9310273 | Msa0006430:intron | 35.0% |
| CTTATGAATACATCAGAAGC+TGG | - | chr1_1:9310371-9310390 | Msa0006430:CDS | 35.0% | |
| ! | AAGTTTCTGTGAGACTGTTT+TGG | + | chr1_1:9310410-9310429 | None:intergenic | 35.0% |
| CTTCAAAAGTCACACATGAT+TGG | + | chr1_1:9310522-9310541 | None:intergenic | 35.0% | |
| TTTCTCTTCCCCATGTTATT+TGG | + | chr1_1:9310680-9310699 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTAAGGAGAA+TGG | - | chr1_1:9310809-9310828 | Msa0006430:intron | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | + | chr1_1:9310842-9310861 | None:intergenic | 35.0% | |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | - | chr1_1:9310847-9310866 | Msa0006430:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | - | chr1_1:9310861-9310880 | Msa0006430:intron | 35.0% |
| !!! | GTTTGTGCTTGTTTTGAGTT+TGG | - | chr1_1:9310941-9310960 | Msa0006430:intron | 35.0% |
| TAAACACTTGTGAGACTGTT+TGG | + | chr1_1:9311193-9311212 | None:intergenic | 35.0% | |
| ! | GTTCTTTTACTGCACACAAA+GGG | + | chr1_1:9311254-9311273 | None:intergenic | 35.0% |
| ! | AGTTCTTTTACTGCACACAA+AGG | + | chr1_1:9311255-9311274 | None:intergenic | 35.0% |
| CCAAGTTCAACATCAAATGT+CGG | + | chr1_1:9311385-9311404 | None:intergenic | 35.0% | |
| GGTTGAATCGAAAGAAACTA+AGG | - | chr1_1:9311439-9311458 | Msa0006430:intron | 35.0% | |
| GATGTGATCCATCACAAAAA+AGG | + | chr1_1:9311732-9311751 | None:intergenic | 35.0% | |
| TAGAAAAACCAATTTGGGAG+GGG | + | chr1_1:9311831-9311850 | None:intergenic | 35.0% | |
| CATAGAAAAACCAATTTGGG+AGG | + | chr1_1:9311833-9311852 | None:intergenic | 35.0% | |
| AACTCCAACTCGAGATTAAA+TGG | + | chr1_1:9311905-9311924 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | - | chr1_1:9312017-9312036 | Msa0006430:intron | 35.0% | |
| AGAAACTAGTAAAATGGCCT+CGG | + | chr1_1:9312226-9312245 | None:intergenic | 35.0% | |
| TGAAAATGTCAAAAGAGGAC+GGG | + | chr1_1:9312320-9312339 | None:intergenic | 35.0% | |
| ! | TACTCTTCTATGCACTGTTT+TGG | - | chr1_1:9312408-9312427 | Msa0006430:intron | 35.0% |
| TGTGAACAGGAATAAATGCT+TGG | + | chr1_1:9312694-9312713 | None:intergenic | 35.0% | |
| ! | TTCCTGTTCACAATTTTCTC+TGG | - | chr1_1:9312702-9312721 | Msa0006430:intron | 35.0% |
| AACCAGAGAAAATTGTGAAC+AGG | + | chr1_1:9312707-9312726 | None:intergenic | 35.0% | |
| ACAAAAACATGGTCATGGAA+AGG | + | chr1_1:9312920-9312939 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | + | chr1_1:9312961-9312980 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | - | chr1_1:9312961-9312980 | Msa0006430:intron | 35.0% | |
| TGCAAATGAAAACACAAACC+TGG | + | chr1_1:9312982-9313001 | None:intergenic | 35.0% | |
| AAAAATAAGCGCGAGAATCT+TGG | - | chr1_1:9313108-9313127 | Msa0006430:intron | 35.0% | |
| AGCAATGTTAGCAAAGAAAG+GGG | + | chr1_1:9313208-9313227 | None:intergenic | 35.0% | |
| CAGCAATGTTAGCAAAGAAA+GGG | + | chr1_1:9313209-9313228 | None:intergenic | 35.0% | |
| TCAGCAATGTTAGCAAAGAA+AGG | + | chr1_1:9313210-9313229 | None:intergenic | 35.0% | |
| TTCTTTGCTAACATTGCTGA+TGG | - | chr1_1:9313210-9313229 | Msa0006430:intron | 35.0% | |
| GCATATCTTAAACACCATGA+CGG | - | chr1_1:9313541-9313560 | Msa0006430:intron | 35.0% | |
| CATAAGTCAACAATCACATG+TGG | + | chr1_1:9313569-9313588 | None:intergenic | 35.0% | |
| TGCAAAGAAAATGGATCTTC+AGG | - | chr1_1:9313587-9313606 | Msa0006430:intron | 35.0% | |
| GCAAAGAAAATGGATCTTCA+GGG | - | chr1_1:9313588-9313607 | Msa0006430:intron | 35.0% | |
| !!! | ACTTGCATTTTTTGCGAATG+TGG | - | chr1_1:9313723-9313742 | Msa0006430:intron | 35.0% |
| AATTTGTCTGACTCATTGTG+AGG | + | chr1_1:9313851-9313870 | None:intergenic | 35.0% | |
| ! | TCATTTTATCAAGGCTTCCT+CGG | + | chr1_1:9313877-9313896 | None:intergenic | 35.0% |
| ATTGATTGAGGTGTGCAAAT+TGG | - | chr1_1:9313898-9313917 | Msa0006430:intron | 35.0% | |
| TGTGTGCAAACTACATGTTT+AGG | - | chr1_1:9313970-9313989 | Msa0006430:intron | 35.0% | |
| TGCAAACTACATGTTTAGGT+TGG | - | chr1_1:9313974-9313993 | Msa0006430:intron | 35.0% | |
| GTGTACATTGAGAACATCTT+CGG | + | chr1_1:9314101-9314120 | None:intergenic | 35.0% | |
| ! | TTTTCTTCTTCTGCAAAGCT+CGG | + | chr1_1:9314201-9314220 | None:intergenic | 35.0% |
| AGCTTTGCAGAAGAAGAAAA+AGG | - | chr1_1:9314201-9314220 | Msa0006430:intron | 35.0% | |
| CACTTTATATTCGACACGAA+TGG | - | chr1_1:9314375-9314394 | Msa0006430:intron | 35.0% | |
| AAAAAAGCCCCTATGAAGAA+TGG | + | chr1_1:9314419-9314438 | None:intergenic | 35.0% | |
| GGAAAACGGAAAGCAAAGAA+GGG | + | chr1_1:9307937-9307956 | None:intergenic | 40.0% | |
| TGGAAAACGGAAAGCAAAGA+AGG | + | chr1_1:9307938-9307957 | None:intergenic | 40.0% | |
| GCTTCAAACTTCGACTATGA+TGG | + | chr1_1:9308316-9308335 | None:intergenic | 40.0% | |
| TGGGGTGCATAATTGTTGAA+TGG | - | chr1_1:9308438-9308457 | Msa0006430:CDS | 40.0% | |
| TTGATAGATGGTCTGAACTC+TGG | - | chr1_1:9308583-9308602 | Msa0006430:intron | 40.0% | |
| GCCCAACCCACATATAATTT+AGG | - | chr1_1:9308638-9308657 | Msa0006430:CDS | 40.0% | |
| AGGTTTCTGATTAAGGGAAC+AGG | - | chr1_1:9308683-9308702 | Msa0006430:intron | 40.0% | |
| CATCAGACATGTCTACATCT+TGG | - | chr1_1:9308805-9308824 | Msa0006430:CDS | 40.0% | |
| TGGAGGCAGGTAATATAACT+TGG | + | chr1_1:9308944-9308963 | None:intergenic | 40.0% | |
| CTTTCTTTCTTGTTCGATGG+AGG | + | chr1_1:9308961-9308980 | None:intergenic | 40.0% | |
| GGACTTTCTTTCTTGTTCGA+TGG | + | chr1_1:9308964-9308983 | None:intergenic | 40.0% | |
| !! | CTCTTGTATCTCTCTGAAAC+AGG | + | chr1_1:9309110-9309129 | None:intergenic | 40.0% |
| GAGATACAAGAGTGAAGATG+AGG | - | chr1_1:9309118-9309137 | Msa0006430:intron | 40.0% | |
| AACGTGACATCCTTACAAGA+TGG | + | chr1_1:9309384-9309403 | None:intergenic | 40.0% | |
| ! | GCCTTGAACGAATTGTCTTT+TGG | + | chr1_1:9309495-9309514 | None:intergenic | 40.0% |
| AAAGACAATTCGTTCAAGGC+AGG | - | chr1_1:9309495-9309514 | Msa0006430:intron | 40.0% | |
| AAGACAATTCGTTCAAGGCA+GGG | - | chr1_1:9309496-9309515 | Msa0006430:intron | 40.0% | |
| ! | AATGGGCCTCACTGTATTTT+CGG | + | chr1_1:9309634-9309653 | None:intergenic | 40.0% |
| GGACTGTCGAATAACAAAAC+AGG | + | chr1_1:9309686-9309705 | None:intergenic | 40.0% | |
| ! | CTACTGCATTTTGAATGGCA+AGG | + | chr1_1:9309841-9309860 | None:intergenic | 40.0% |
| ! | AGCAGCTACTGCATTTTGAA+TGG | + | chr1_1:9309846-9309865 | None:intergenic | 40.0% |
| ! | TTTGATTGCGGAGAAAGTGT+AGG | - | chr1_1:9309869-9309888 | Msa0006430:intron | 40.0% |
| CTCTACCAGCTTTACAACAT+TGG | + | chr1_1:9310044-9310063 | None:intergenic | 40.0% | |
| GTTGTAAAGCTGGTAGAGTT+AGG | - | chr1_1:9310046-9310065 | Msa0006430:intron | 40.0% | |
| ! | GTAAGGGTAGGTATGGATTT+TGG | - | chr1_1:9310126-9310145 | Msa0006430:intron | 40.0% |
| AAACTTTGGGTCGTTTGGAT+TGG | + | chr1_1:9310458-9310477 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | - | chr1_1:9310691-9310710 | Msa0006430:intron | 40.0% | |
| ! | GGAGCAACATCTTCCTTTTT+GGG | + | chr1_1:9310734-9310753 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | + | chr1_1:9310735-9310754 | None:intergenic | 40.0% |
| CTTATCCTTCCATCCCAAAA+GGG | + | chr1_1:9310774-9310793 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | + | chr1_1:9310775-9310794 | None:intergenic | 40.0% | |
| CTATCTTGGAGAACTTATGG+AGG | - | chr1_1:9311117-9311136 | Msa0006430:intron | 40.0% | |
| CCGACATTTGATGTTGAACT+TGG | - | chr1_1:9311382-9311401 | Msa0006430:intron | 40.0% | |
| CTGAAATTCACATGCACAGA+AGG | + | chr1_1:9311990-9312009 | None:intergenic | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | - | chr1_1:9311997-9312016 | Msa0006430:intron | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | - | chr1_1:9312277-9312296 | Msa0006430:intron | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | - | chr1_1:9312278-9312297 | Msa0006430:intron | 40.0% | |
| TGCATACTGGAAATTGCTGA+AGG | - | chr1_1:9312357-9312376 | Msa0006430:intron | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | - | chr1_1:9312379-9312398 | Msa0006430:intron | 40.0% | |
| ! | AAAGCACCACCAAACTAAGA+TGG | + | chr1_1:9312463-9312482 | None:intergenic | 40.0% |
| !! | ATCTTAGTTTGGTGGTGCTT+TGG | - | chr1_1:9312462-9312481 | Msa0006430:intron | 40.0% |
| !! | TCTTAGTTTGGTGGTGCTTT+GGG | - | chr1_1:9312463-9312482 | Msa0006430:intron | 40.0% |
| TATGTATTTGAATAGGGGCG+TGG | - | chr1_1:9312746-9312765 | Msa0006430:intron | 40.0% | |
| !! | CCTTCGGTGTTTCAAATATC+TGG | + | chr1_1:9312880-9312899 | None:intergenic | 40.0% |
| ! | CCAGATATTTGAAACACCGA+AGG | - | chr1_1:9312877-9312896 | Msa0006430:intron | 40.0% |
| TACATCGTCTACACTTGTCT+AGG | - | chr1_1:9313487-9313506 | Msa0006430:intron | 40.0% | |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | + | chr1_1:9313875-9313894 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | + | chr1_1:9313876-9313895 | None:intergenic | 40.0% |
| !! | TACATGTTTAGGTTGGTCCA+CGG | - | chr1_1:9313981-9314000 | Msa0006430:intron | 40.0% |
| !! | ATATTTGGTGGCAGTTTTGG+AGG | - | chr1_1:9314025-9314044 | Msa0006430:intron | 40.0% |
| TTGCAGAAGAAGAAAAAGGC+TGG | - | chr1_1:9314205-9314224 | Msa0006430:intron | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | - | chr1_1:9314239-9314258 | Msa0006430:intron | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | - | chr1_1:9314258-9314277 | Msa0006430:intron | 40.0% | |
| ! | TCGACACGAATGGTGATTTT+TGG | - | chr1_1:9314385-9314404 | Msa0006430:intron | 40.0% |
| !!! | CACGAATGGTGATTTTTGGT+CGG | - | chr1_1:9314389-9314408 | Msa0006430:intron | 40.0% |
| TATATAGTACAAGGCAGGGT+AGG | + | chr1_1:9314604-9314623 | None:intergenic | 40.0% | |
| GTGGGAAAATTTAATTGCCG+TGG | + | chr1_1:9314740-9314759 | None:intergenic | 40.0% | |
| ! | TGGTGGCGATGAATGGAAAA+CGG | + | chr1_1:9307951-9307970 | None:intergenic | 45.0% |
| !!! | GAGATTTTGGTGGCGATGAA+TGG | + | chr1_1:9307958-9307977 | None:intergenic | 45.0% |
| !! | AGGTGAAGGTTGATAATCGC+CGG | + | chr1_1:9307986-9308005 | None:intergenic | 45.0% |
| AGAAAACAGATGTCGGGAGA+AGG | + | chr1_1:9308037-9308056 | None:intergenic | 45.0% | |
| CATACATACAGTAACAGCGG+TGG | + | chr1_1:9308108-9308127 | None:intergenic | 45.0% | |
| GTATCCAGTAACAAAGGACG+AGG | - | chr1_1:9308543-9308562 | Msa0006430:intron | 45.0% | |
| CAGACATGTCTACATCTTGG+TGG | - | chr1_1:9308808-9308827 | Msa0006430:CDS | 45.0% | |
| ! | ATGTCTACATCTTGGTGGCT+AGG | - | chr1_1:9308813-9308832 | Msa0006430:CDS | 45.0% |
| ! | TGTCTACATCTTGGTGGCTA+GGG | - | chr1_1:9308814-9308833 | Msa0006430:CDS | 45.0% |
| TACAAGATGGTACAGACTCC+TGG | - | chr1_1:9309149-9309168 | Msa0006430:intron | 45.0% | |
| CAGTTCACTCAAACACATCC+AGG | + | chr1_1:9309170-9309189 | None:intergenic | 45.0% | |
| CTGGATGTGTTTGAGTGAAC+TGG | - | chr1_1:9309168-9309187 | Msa0006430:intron | 45.0% | |
| ATGAAAGGAAGGAAGGCCTA+AGG | + | chr1_1:9309199-9309218 | None:intergenic | 45.0% | |
| AGGGAGACGAGAAGTTAGTA+AGG | + | chr1_1:9309239-9309258 | None:intergenic | 45.0% | |
| AATTGGTTAAGGCAGAGCTC+AGG | - | chr1_1:9309593-9309612 | Msa0006430:intron | 45.0% | |
| AGCTCAGGAAAGTGGAGATA+GGG | - | chr1_1:9309608-9309627 | Msa0006430:intron | 45.0% | |
| ATAGGGCCGAAAATACAGTG+AGG | - | chr1_1:9309625-9309644 | Msa0006430:intron | 45.0% | |
| ATACAGTGAGGCCCATTTGT+TGG | - | chr1_1:9309637-9309656 | Msa0006430:intron | 45.0% | |
| CTCCATCAAGGCCAACAAAT+GGG | + | chr1_1:9309651-9309670 | None:intergenic | 45.0% | |
| ACTCCATCAAGGCCAACAAA+TGG | + | chr1_1:9309652-9309671 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGATGGAGTTGAT+TGG | - | chr1_1:9309656-9309675 | Msa0006430:intron | 45.0% |
| AGGATCGAGAGTAAGATTGG+AGG | + | chr1_1:9309821-9309840 | None:intergenic | 45.0% | |
| GCAAGGATCGAGAGTAAGAT+TGG | + | chr1_1:9309824-9309843 | None:intergenic | 45.0% | |
| GTAGCTGCTGTGTTTGATTG+CGG | - | chr1_1:9309857-9309876 | Msa0006430:intron | 45.0% | |
| CTGAGCCAATGTTGTAAAGC+TGG | - | chr1_1:9310036-9310055 | Msa0006430:intron | 45.0% | |
| GTAAAGCTGGTAGAGTTAGG+TGG | - | chr1_1:9310049-9310068 | Msa0006430:intron | 45.0% | |
| !!! | TTTTGGTAGTGGGGTACGTA+AGG | - | chr1_1:9310109-9310128 | Msa0006430:intron | 45.0% |
| !! | TTTGGTAGTGGGGTACGTAA+GGG | - | chr1_1:9310110-9310129 | Msa0006430:intron | 45.0% |
| ATGGTGCTTCACCTGTATTC+AGG | - | chr1_1:9310828-9310847 | Msa0006430:intron | 45.0% | |
| ! | GCTCTAGGCGTATTGTTTAC+AGG | - | chr1_1:9310876-9310895 | Msa0006430:intron | 45.0% |
| GCTTCTGCCTCATTGCAAAA+AGG | - | chr1_1:9311409-9311428 | Msa0006430:intron | 45.0% | |
| CAATTTGGGAGGGGAAACAA+AGG | + | chr1_1:9311822-9311841 | None:intergenic | 45.0% | |
| ! | CTTTGTTTCCCCTCCCAAAT+TGG | - | chr1_1:9311820-9311839 | Msa0006430:CDS | 45.0% |
| GTGCATGTGAATTTCAGTGC+AGG | - | chr1_1:9311993-9312012 | Msa0006430:exon | 45.0% | |
| AATTTAACAGACGGGCCGTT+GGG | + | chr1_1:9312055-9312074 | None:intergenic | 45.0% | |
| AAATTTAACAGACGGGCCGT+TGG | + | chr1_1:9312056-9312075 | None:intergenic | 45.0% | |
| AATTCCTCCATTGTGTGCAC+TGG | + | chr1_1:9312268-9312287 | None:intergenic | 45.0% | |
| CTTACTGGGAACCACCTAAA+AGG | - | chr1_1:9312292-9312311 | Msa0006430:intron | 45.0% | |
| !! | CTTAGTTTGGTGGTGCTTTG+GGG | - | chr1_1:9312464-9312483 | Msa0006430:intron | 45.0% |
| !! | TTAGTTTGGTGGTGCTTTGG+GGG | - | chr1_1:9312465-9312484 | Msa0006430:intron | 45.0% |
| AACACCGAAGGACCATAGAA+AGG | - | chr1_1:9312889-9312908 | Msa0006430:intron | 45.0% | |
| ! | TTGGCCTTTCTATGGTCCTT+CGG | + | chr1_1:9312896-9312915 | None:intergenic | 45.0% |
| AACATGGTCATGGAAAGGCT+TGG | + | chr1_1:9312915-9312934 | None:intergenic | 45.0% | |
| AATCACATGTGGTACCGTCA+TGG | + | chr1_1:9313558-9313577 | None:intergenic | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | + | chr1_1:9314001-9314020 | None:intergenic | 45.0% | |
| ! | TGGTTTGGCGACACGTATAA+TGG | + | chr1_1:9314070-9314089 | None:intergenic | 45.0% |
| ATTATACGTGTCGCCAAACC+AGG | - | chr1_1:9314069-9314088 | Msa0006430:intron | 45.0% | |
| TCTTCGGTTGTTACCTGGTT+TGG | + | chr1_1:9314085-9314104 | None:intergenic | 45.0% | |
| GAACATCTTCGGTTGTTACC+TGG | + | chr1_1:9314090-9314109 | None:intergenic | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | - | chr1_1:9314242-9314261 | Msa0006430:intron | 45.0% | |
| TCGGCAGTCCATTCTTCATA+GGG | - | chr1_1:9314408-9314427 | Msa0006430:intron | 45.0% | |
| GCCACCAAAATCTCCATAGC+CGG | - | chr1_1:9307964-9307983 | Msa0006430:three_prime_UTR | 50.0% | |
| !! | ATCGCCGGCTATGGAGATTT+TGG | + | chr1_1:9307971-9307990 | None:intergenic | 50.0% |
| !! | AGGTTGATAATCGCCGGCTA+TGG | + | chr1_1:9307980-9307999 | None:intergenic | 50.0% |
| ATTGCAGAGGAAGGAGGTGA+AGG | + | chr1_1:9308000-9308019 | None:intergenic | 50.0% | |
| TAGGTGATTGCAGAGGAAGG+AGG | + | chr1_1:9308006-9308025 | None:intergenic | 50.0% | |
| TCCTTCCTCTGCAATCACCT+AGG | - | chr1_1:9308005-9308024 | Msa0006430:three_prime_UTR | 50.0% | |
| ACCTAGGTGATTGCAGAGGA+AGG | + | chr1_1:9308009-9308028 | None:intergenic | 50.0% | |
| AGGTACCTAGGTGATTGCAG+AGG | + | chr1_1:9308013-9308032 | None:intergenic | 50.0% | |
| AACAGATGTCGGGAGAAGGA+AGG | + | chr1_1:9308033-9308052 | None:intergenic | 50.0% | |
| GAGCAACACAAGCATGCAAG+AGG | + | chr1_1:9308080-9308099 | None:intergenic | 50.0% | |
| TGGTCCTCGTCCTTTGTTAC+TGG | + | chr1_1:9308550-9308569 | None:intergenic | 50.0% | |
| CAATGAAAAGTTGGGGACCG+AGG | - | chr1_1:9308902-9308921 | Msa0006430:intron | 50.0% | |
| GACTTAAGTCGTGGACTCCT+CGG | + | chr1_1:9308922-9308941 | None:intergenic | 50.0% | |
| CTTTCTTGTTCGATGGAGGC+AGG | + | chr1_1:9308957-9308976 | None:intergenic | 50.0% | |
| GAGTGAACTGGACTCACCTT+AGG | - | chr1_1:9309180-9309199 | Msa0006430:intron | 50.0% | |
| TAAGGCAGAGCTCAGGAAAG+TGG | - | chr1_1:9309600-9309619 | Msa0006430:intron | 50.0% | |
| GAGCTCAGGAAAGTGGAGAT+AGG | - | chr1_1:9309607-9309626 | Msa0006430:intron | 50.0% | |
| CCAGCCAATCAACTCCATCA+AGG | + | chr1_1:9309663-9309682 | None:intergenic | 50.0% | |
| ! | CCTTGATGGAGTTGATTGGC+TGG | - | chr1_1:9309660-9309679 | Msa0006430:intron | 50.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | - | chr1_1:9310703-9310722 | Msa0006430:intron | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | - | chr1_1:9310758-9310777 | Msa0006430:intron | 50.0% |
| ! | CTGCACACAAAGGGCTTGTT+TGG | + | chr1_1:9311245-9311264 | None:intergenic | 50.0% |
| CTCAACAAGCTCGTTCAAGG+TGG | + | chr1_1:9311468-9311487 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | + | chr1_1:9311471-9311490 | None:intergenic | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | - | chr1_1:9312037-9312056 | Msa0006430:intron | 50.0% | |
| ATTTAACAGACGGGCCGTTG+GGG | + | chr1_1:9312054-9312073 | None:intergenic | 50.0% | |
| ACTGTCTCTCTTTCTCTCCG+AGG | - | chr1_1:9312206-9312225 | Msa0006430:intron | 50.0% | |
| TGTGCACTGGAAAGCAGTGA+AGG | + | chr1_1:9312255-9312274 | None:intergenic | 50.0% | |
| CTGCTTTCCAGTGCACACAA+TGG | - | chr1_1:9312258-9312277 | Msa0006430:intron | 50.0% | |
| CTTTCCAGTGCACACAATGG+AGG | - | chr1_1:9312261-9312280 | Msa0006430:intron | 50.0% | |
| ! | AAAGAGGACGGGAGCCTTTT+AGG | + | chr1_1:9312309-9312328 | None:intergenic | 50.0% |
| GCTGAAGGAGATGCTGTTAC+AGG | - | chr1_1:9312372-9312391 | Msa0006430:intron | 50.0% | |
| ! | GGAAAGGCTTGGCCTTTCTA+TGG | + | chr1_1:9312904-9312923 | None:intergenic | 50.0% |
| GAGTCAGACAAATTACCCCG+AGG | - | chr1_1:9313857-9313876 | Msa0006430:intron | 50.0% | |
| GGCTGGAACGTTTGCAAAGA+AGG | - | chr1_1:9314222-9314241 | Msa0006430:intron | 50.0% | |
| CACATATCTGCGAACTCGTC+AGG | + | chr1_1:9314298-9314317 | None:intergenic | 50.0% | |
| CTGACGAGTTCGCAGATATG+TGG | - | chr1_1:9314296-9314315 | Msa0006430:intron | 50.0% | |
| GTCGGCAGTCCATTCTTCAT+AGG | - | chr1_1:9314407-9314426 | Msa0006430:intron | 50.0% | |
| CGGCAGTCCATTCTTCATAG+GGG | - | chr1_1:9314409-9314428 | Msa0006430:intron | 50.0% | |
| ! | GCCGGCTATGGAGATTTTGG+TGG | + | chr1_1:9307968-9307987 | None:intergenic | 55.0% |
| !! | TCGGGAGAAGGAAGGTACCT+AGG | + | chr1_1:9308025-9308044 | None:intergenic | 55.0% |
| ATTCGTTCAAGGCAGGGCTC+AGG | - | chr1_1:9309502-9309521 | Msa0006430:intron | 55.0% | |
| !! | GGCCCATTTGTTGGCCTTGA+TGG | - | chr1_1:9309646-9309665 | Msa0006430:intron | 55.0% |
| ! | GTAGTGGGGTACGTAAGGGT+AGG | - | chr1_1:9310114-9310133 | Msa0006430:intron | 55.0% |
| GGGGTACGTAAGGGTAGGTA+TGG | - | chr1_1:9310119-9310138 | Msa0006430:intron | 55.0% | |
| AGCTGTGGCTGTGCCCAAAA+AGG | - | chr1_1:9310718-9310737 | Msa0006430:intron | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | - | chr1_1:9310747-9310766 | Msa0006430:intron | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | - | chr1_1:9310757-9310776 | Msa0006430:intron | 55.0% |
| CATCCCAAAAGGGTCCTCAC+TGG | + | chr1_1:9310764-9310783 | None:intergenic | 55.0% | |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | - | chr1_1:9310762-9310781 | Msa0006430:intron | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | - | chr1_1:9310766-9310785 | Msa0006430:intron | 55.0% |
| GCATGAGATGGCCAATCCTC+TGG | - | chr1_1:9314270-9314289 | Msa0006430:intron | 55.0% | |
| CTCGTCAGGTTCCAGAGGAT+TGG | + | chr1_1:9314284-9314303 | None:intergenic | 55.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | + | chr1_1:9310755-9310774 | None:intergenic | 60.0% |
| ! | GAGGACGGGAGCCTTTTAGG+TGG | + | chr1_1:9312306-9312325 | None:intergenic | 60.0% |
| GCGAACTCGTCAGGTTCCAG+AGG | + | chr1_1:9314289-9314308 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 9307928 | 9314762 | 9307928 | ID=Msa0006430;Name=Msa0006430 |
| chr1_1 | mRNA | 9307928 | 9314762 | 9307928 | ID=Msa0006430-mRNA-1;Parent=Msa0006430;Name=Msa0006430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=108|1|1|1|0.77|0.7|10|403|319 |
| chr1_1 | exon | 9307928 | 9308112 | 9307928 | ID=Msa0006430-mRNA-1:exon:3324;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9308145 | 9308494 | 9308145 | ID=Msa0006430-mRNA-1:exon:3323;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9308600 | 9308698 | 9308600 | ID=Msa0006430-mRNA-1:exon:3322;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9308783 | 9308851 | 9308783 | ID=Msa0006430-mRNA-1:exon:3321;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9309708 | 9309809 | 9309708 | ID=Msa0006430-mRNA-1:exon:3320;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9310297 | 9310421 | 9310297 | ID=Msa0006430-mRNA-1:exon:3319;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9310602 | 9310680 | 9310602 | ID=Msa0006430-mRNA-1:exon:3318;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9311170 | 9311311 | 9311170 | ID=Msa0006430-mRNA-1:exon:3317;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9311793 | 9312013 | 9311793 | ID=Msa0006430-mRNA-1:exon:3316;Parent=Msa0006430-mRNA-1 |
| chr1_1 | exon | 9314664 | 9314762 | 9314664 | ID=Msa0006430-mRNA-1:exon:3315;Parent=Msa0006430-mRNA-1 |
| chr1_1 | five_prime_UTR | 9314664 | 9314762 | 9314664 | ID=Msa0006430-mRNA-1:five_prime_utr;Parent=Msa0006430-mRNA-1 |
| chr1_1 | five_prime_UTR | 9312005 | 9312013 | 9312005 | ID=Msa0006430-mRNA-1:five_prime_utr;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9311793 | 9312004 | 9311793 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9311170 | 9311311 | 9311170 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9310602 | 9310680 | 9310602 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9310297 | 9310421 | 9310297 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9309708 | 9309809 | 9309708 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9308783 | 9308851 | 9308783 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9308600 | 9308698 | 9308600 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | CDS | 9308363 | 9308494 | 9308363 | ID=Msa0006430-mRNA-1:cds;Parent=Msa0006430-mRNA-1 |
| chr1_1 | three_prime_UTR | 9308145 | 9308362 | 9308145 | ID=Msa0006430-mRNA-1:three_prime_utr;Parent=Msa0006430-mRNA-1 |
| chr1_1 | three_prime_UTR | 9307928 | 9308112 | 9307928 | ID=Msa0006430-mRNA-1:three_prime_utr;Parent=Msa0006430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
