Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006770 | XP_003588760.1 | 97.200 | 250 | 5 | 1 | 1 | 250 | 27 | 274 | 2.12e-171 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006770 | sp|O48781|SPX2_ARATH | 56.223 | 233 | 95 | 2 | 21 | 250 | 45 | 273 | 8.87e-79 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006770 | Msa0100960 | 0.905772 | 3.015810e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006770 | MtrunA17_Chr1g0149301 | 97.200 | 250 | 5 | 1 | 1 | 250 | 27 | 274 | 1.95e-175 | 483 |
| Msa0006770 | MtrunA17_Chr4g0063731 | 57.261 | 241 | 96 | 3 | 11 | 249 | 37 | 272 | 2.07e-86 | 258 |
| Msa0006770 | MtrunA17_Chr3g0137851 | 59.149 | 235 | 69 | 4 | 1 | 233 | 27 | 236 | 6.57e-81 | 243 |
| Msa0006770 | MtrunA17_Chr4g0012631 | 45.794 | 214 | 76 | 5 | 42 | 242 | 55 | 241 | 1.21e-49 | 163 |
| Msa0006770 | MtrunA17_Chr8g0372781 | 40.465 | 215 | 107 | 3 | 43 | 244 | 66 | 272 | 2.06e-43 | 149 |
| Msa0006770 | MtrunA17_Chr7g0231141 | 43.056 | 72 | 40 | 1 | 109 | 180 | 5 | 75 | 2.71e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006770 | AT2G26660.1 | 56.223 | 233 | 95 | 2 | 21 | 250 | 45 | 273 | 9.02e-80 | 242 |
| Msa0006770 | AT5G20150.1 | 54.321 | 243 | 79 | 4 | 1 | 243 | 27 | 237 | 7.05e-75 | 228 |
| Msa0006770 | AT2G45130.1 | 43.541 | 209 | 85 | 5 | 43 | 243 | 42 | 225 | 3.45e-46 | 154 |
| Msa0006770 | AT5G15330.1 | 40.367 | 218 | 107 | 4 | 43 | 250 | 85 | 289 | 1.12e-45 | 155 |
| Msa0006770 | AT5G15330.2 | 40.367 | 218 | 107 | 4 | 43 | 250 | 154 | 358 | 4.37e-45 | 155 |
Find 46 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATGTTCTCCATATTT+TGG | 0.132016 | 1_1:-9784434 | None:intergenic |
| GTTGAAATTGAGAAATTTAA+TGG | 0.239620 | 1_1:+9781769 | Msa0006770:CDS |
| TTCAAGACATCTTGGATAAA+AGG | 0.255878 | 1_1:-9784210 | None:intergenic |
| TGGATCTCGGAAAGTTCTTT+TGG | 0.256770 | 1_1:-9784414 | None:intergenic |
| TTCTTCGAAACGGCGTCGTT+TGG | 0.281601 | 1_1:+9781681 | Msa0006770:CDS |
| AGATACTCTGAAAGAGATTA+GGG | 0.311299 | 1_1:+9784479 | Msa0006770:CDS |
| GAAGAAGAATCAATCTCTTT+AGG | 0.317856 | 1_1:-9781655 | None:intergenic |
| ACTTTCCGAGATCCAAAATA+TGG | 0.335799 | 1_1:+9784422 | Msa0006770:CDS |
| TTGCCCTAGAGGCCCACTTT+TGG | 0.363906 | 1_1:-9784307 | None:intergenic |
| TAGATACTCTGAAAGAGATT+AGG | 0.367448 | 1_1:+9784478 | Msa0006770:CDS |
| GACAGTAGGGAGGGAAATAG+TGG | 0.390036 | 1_1:+9783149 | Msa0006770:CDS |
| CTGGGCCAAGAGTTCTGATA+TGG | 0.418354 | 1_1:+9783119 | Msa0006770:CDS |
| AAGAAGAATATGTTATCAAA+TGG | 0.435300 | 1_1:+9781809 | Msa0006770:CDS |
| AATTGCAAGACAAAGTTGCC+TGG | 0.440049 | 1_1:+9783100 | Msa0006770:CDS |
| AAGAAATATGATAAGCGAAC+TGG | 0.447869 | 1_1:+9784171 | Msa0006770:CDS |
| GAAACGGCGTCGTTTGGATG+AGG | 0.475372 | 1_1:+9781687 | Msa0006770:CDS |
| CAACTCCATATCAGAACTCT+TGG | 0.480256 | 1_1:-9783124 | None:intergenic |
| TCCTCTGCATAGCGAGACTT+TGG | 0.481859 | 1_1:+9784536 | Msa0006770:CDS |
| TCCCCAAAAGTGGGCCTCTA+GGG | 0.484147 | 1_1:+9784304 | Msa0006770:CDS |
| ATGGCTGGTTCAAGACATCT+TGG | 0.485857 | 1_1:-9784218 | None:intergenic |
| CTTAGTTTCATTTGCAGTCG+TGG | 0.487315 | 1_1:-9784373 | None:intergenic |
| CACGACTGCAAATGAAACTA+AGG | 0.499694 | 1_1:+9784374 | Msa0006770:CDS |
| TTCCCCAAAAGTGGGCCTCT+AGG | 0.501128 | 1_1:+9784303 | Msa0006770:CDS |
| GGAGTTGATGACAGTAGGGA+GGG | 0.527766 | 1_1:+9783140 | Msa0006770:CDS |
| GCATAGCGAGACTTTGGTAG+AGG | 0.537663 | 1_1:+9784542 | Msa0006770:CDS |
| GATATGGAGTTGATGACAGT+AGG | 0.558831 | 1_1:+9783135 | Msa0006770:CDS |
| AGAATATGTTATCAAATGGA+AGG | 0.560145 | 1_1:+9781813 | Msa0006770:CDS |
| TGAAGGAGAGGTTACGAAAG+AGG | 0.561251 | 1_1:+9781720 | Msa0006770:CDS |
| CATATCAGAACTCTTGGCCC+AGG | 0.567662 | 1_1:-9783118 | None:intergenic |
| GATGAGGATGGTGGTGCTGA+AGG | 0.568091 | 1_1:+9781703 | Msa0006770:CDS |
| AGCGAACTGGTGCACTACTT+CGG | 0.569835 | 1_1:+9784184 | Msa0006770:CDS |
| TGGAGTTGATGACAGTAGGG+AGG | 0.576482 | 1_1:+9783139 | Msa0006770:CDS |
| ATTGCAAGACAAAGTTGCCT+GGG | 0.577637 | 1_1:+9783101 | Msa0006770:CDS |
| ATATGGAGTTGATGACAGTA+GGG | 0.604313 | 1_1:+9783136 | Msa0006770:CDS |
| GTTGATAAGGATTGCCCTAG+AGG | 0.607707 | 1_1:-9784318 | None:intergenic |
| CGGCGTCGTTTGGATGAGGA+TGG | 0.613998 | 1_1:+9781691 | Msa0006770:CDS |
| GCAATCCTTATCAACTAGTG+AGG | 0.617605 | 1_1:+9784326 | Msa0006770:CDS |
| ACCAAAGTCTCGCTATGCAG+AGG | 0.618997 | 1_1:-9784537 | None:intergenic |
| AAAGTCTCGCTATGCAGAGG+AGG | 0.622270 | 1_1:-9784534 | None:intergenic |
| TGTGCTTAACAAGCTTGTGA+AGG | 0.649462 | 1_1:+9784254 | Msa0006770:CDS |
| TATAGTGCACTTAACTACAC+AGG | 0.649872 | 1_1:+9783204 | Msa0006770:CDS |
| ACTCTGAAAGAGATTAGGGG+TGG | 0.655189 | 1_1:+9784483 | Msa0006770:CDS |
| CGTCGTTTGGATGAGGATGG+TGG | 0.657509 | 1_1:+9781694 | Msa0006770:CDS |
| GGATGGTGGTGCTGAAGGAG+AGG | 0.662335 | 1_1:+9781708 | Msa0006770:CDS |
| CAAGCTTGTGAAGGAGTGTG+AGG | 0.691985 | 1_1:+9784263 | Msa0006770:CDS |
| GATACTCTGAAAGAGATTAG+GGG | 0.722491 | 1_1:+9784480 | Msa0006770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTGTTGTAATA+TGG | + | chr1_1:9781875-9781894 | Msa0006770:intron | 10.0% |
| !!! | ATATTTTTTTTTTTACTAGT+AGG | - | chr1_1:9782756-9782775 | None:intergenic | 10.0% |
| !!! | TTTTTAACTTTAATCGATTA+TGG | + | chr1_1:9781840-9781859 | Msa0006770:intron | 15.0% |
| !! | TTCTCATATTATAAATGATA+GGG | - | chr1_1:9783408-9783427 | None:intergenic | 15.0% |
| !! | TAAACACAATATAATTAGAT+AGG | + | chr1_1:9784018-9784037 | Msa0006770:intron | 15.0% |
| !! | GTTGAAATTGAGAAATTTAA+TGG | + | chr1_1:9781769-9781788 | Msa0006770:CDS | 20.0% |
| !! | AAGAAGAATATGTTATCAAA+TGG | + | chr1_1:9781809-9781828 | Msa0006770:CDS | 20.0% |
| !! | ATTTGACAAAACTATAATCT+TGG | - | chr1_1:9781956-9781975 | None:intergenic | 20.0% |
| !!! | ATCCAATGTATGATTATTTT+TGG | + | chr1_1:9782184-9782203 | Msa0006770:intron | 20.0% |
| !! | ATCTTAAATATCAATGAATG+TGG | + | chr1_1:9782347-9782366 | Msa0006770:intron | 20.0% |
| !! | TAAAATTATACGTATTGAGA+TGG | - | chr1_1:9782662-9782681 | None:intergenic | 20.0% |
| !! | GTTCTCATATTATAAATGAT+AGG | - | chr1_1:9783409-9783428 | None:intergenic | 20.0% |
| !! | ATGAAGTTATAAGAAAATCA+TGG | + | chr1_1:9783561-9783580 | Msa0006770:intron | 20.0% |
| !! | TATAATTAGATAGGAAAACT+AGG | + | chr1_1:9784027-9784046 | Msa0006770:intron | 20.0% |
| !! | ATAATTAGATAGGAAAACTA+GGG | + | chr1_1:9784028-9784047 | Msa0006770:intron | 20.0% |
| !! | AAGAGGTTAATGATTTTCTT+AGG | + | chr1_1:9781737-9781756 | Msa0006770:CDS | 25.0% |
| !!! | TAATGATTTTCTTAGGTTGT+TGG | + | chr1_1:9781744-9781763 | Msa0006770:CDS | 25.0% |
| ! | AGAATATGTTATCAAATGGA+AGG | + | chr1_1:9781813-9781832 | Msa0006770:CDS | 25.0% |
| ! | CTCAAATTATTAACATGTGT+CGG | - | chr1_1:9782045-9782064 | None:intergenic | 25.0% |
| ! | ACAATTTAGATCAGAATTGT+GGG | + | chr1_1:9782111-9782130 | Msa0006770:intron | 25.0% |
| ! | AAGCATCATAGATTATGAAA+TGG | - | chr1_1:9782159-9782178 | None:intergenic | 25.0% |
| ! | CTCCAAAAATAATCATACAT+TGG | - | chr1_1:9782189-9782208 | None:intergenic | 25.0% |
| ! | CAAAAACTTCAACAAAATCA+CGG | - | chr1_1:9782242-9782261 | None:intergenic | 25.0% |
| ! | AGAATGTATGAATCTTAACA+TGG | + | chr1_1:9782390-9782409 | Msa0006770:intron | 25.0% |
| ! | GAATGTATGAATCTTAACAT+GGG | + | chr1_1:9782391-9782410 | Msa0006770:intron | 25.0% |
| !! | CATATATTGTAATTCTGGAA+AGG | + | chr1_1:9782464-9782483 | Msa0006770:intron | 25.0% |
| !! | AATACGTATAATTTTACCAC+CGG | + | chr1_1:9782666-9782685 | Msa0006770:intron | 25.0% |
| ! | TACAATATACTTTGCAAATG+AGG | - | chr1_1:9783326-9783345 | None:intergenic | 25.0% |
| !!! | GTTTTAGGGGTATTAATTAA+TGG | + | chr1_1:9783509-9783528 | Msa0006770:intron | 25.0% |
| !! | ACCATATTTTGCAAATAAGA+TGG | + | chr1_1:9783620-9783639 | Msa0006770:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr1_1:9783823-9783842 | Msa0006770:intron | 25.0% |
| !! | TGAAAATGTTCTCCATATTT+TGG | - | chr1_1:9784437-9784456 | None:intergenic | 25.0% |
| GAAGAAGAATCAATCTCTTT+AGG | - | chr1_1:9781658-9781677 | None:intergenic | 30.0% | |
| CACAATTTAGATCAGAATTG+TGG | + | chr1_1:9782110-9782129 | Msa0006770:intron | 30.0% | |
| TTGAGTTTGAAGAAATCAAG+TGG | + | chr1_1:9782214-9782233 | Msa0006770:intron | 30.0% | |
| ! | TGAAGTTTTTGCTACAATCA+CGG | + | chr1_1:9782251-9782270 | Msa0006770:intron | 30.0% |
| !! | ATGCAGTTAGTGGATTAAAT+AGG | + | chr1_1:9782315-9782334 | Msa0006770:intron | 30.0% |
| !! | TGCAGTTAGTGGATTAAATA+GGG | + | chr1_1:9782316-9782335 | Msa0006770:intron | 30.0% |
| GTCAGCATATATTGTAATTC+TGG | + | chr1_1:9782459-9782478 | Msa0006770:intron | 30.0% | |
| AACTTATCCTCGAAGTAAAA+TGG | + | chr1_1:9782572-9782591 | Msa0006770:intron | 30.0% | |
| ! | TAATAGTCCATTTTACTTCG+AGG | - | chr1_1:9782582-9782601 | None:intergenic | 30.0% |
| ! | ATACGTATAATTTTACCACC+GGG | + | chr1_1:9782667-9782686 | Msa0006770:intron | 30.0% |
| CTTGTCTGTGTTGTAAATTT+CGG | + | chr1_1:9782714-9782733 | Msa0006770:intron | 30.0% | |
| ACTCGGCTAAAATACATTTA+CGG | - | chr1_1:9782794-9782813 | None:intergenic | 30.0% | |
| ACATATGGCGATATAAAAGT+TGG | - | chr1_1:9782955-9782974 | None:intergenic | 30.0% | |
| TAAGAAGTCGTTCTTAGAAA+TGG | - | chr1_1:9783065-9783084 | None:intergenic | 30.0% | |
| AATGATAATTCAGTCCTTAG+AGG | - | chr1_1:9783452-9783471 | None:intergenic | 30.0% | |
| ! | TGCAAATGAGTTACAGTTTT+AGG | + | chr1_1:9783494-9783513 | Msa0006770:intron | 30.0% |
| ! | GCAAATGAGTTACAGTTTTA+GGG | + | chr1_1:9783495-9783514 | Msa0006770:intron | 30.0% |
| !! | CAAATGAGTTACAGTTTTAG+GGG | + | chr1_1:9783496-9783515 | Msa0006770:intron | 30.0% |
| ! | GCCATCTTATTTGCAAAATA+TGG | - | chr1_1:9783624-9783643 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr1_1:9783819-9783838 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | chr1_1:9783858-9783877 | Msa0006770:intron | 30.0% |
| AGCCATTAGAAAAGATTTAG+AGG | - | chr1_1:9783863-9783882 | None:intergenic | 30.0% | |
| ! | TTTTCTAATGGCTTCTCTAA+TGG | + | chr1_1:9783870-9783889 | Msa0006770:intron | 30.0% |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr1_1:9783938-9783957 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | + | chr1_1:9783939-9783958 | Msa0006770:intron | 30.0% | |
| AAGAAATATGATAAGCGAAC+TGG | + | chr1_1:9784171-9784190 | Msa0006770:CDS | 30.0% | |
| TTCAAGACATCTTGGATAAA+AGG | - | chr1_1:9784213-9784232 | None:intergenic | 30.0% | |
| ! | AAAAACCTCACTAGTTGATA+AGG | - | chr1_1:9784334-9784353 | None:intergenic | 30.0% |
| ! | TAGATACTCTGAAAGAGATT+AGG | + | chr1_1:9784478-9784497 | Msa0006770:CDS | 30.0% |
| ! | AGATACTCTGAAAGAGATTA+GGG | + | chr1_1:9784479-9784498 | Msa0006770:CDS | 30.0% |
| CTTCTTCTTCTTCTTCGAAA+CGG | + | chr1_1:9781671-9781690 | Msa0006770:CDS | 35.0% | |
| !! | TGATTTTCTTAGGTTGTTGG+AGG | + | chr1_1:9781747-9781766 | Msa0006770:CDS | 35.0% |
| AAATCCAATCATGCAGTTAG+TGG | + | chr1_1:9782305-9782324 | Msa0006770:intron | 35.0% | |
| TAATCCACTAACTGCATGAT+TGG | - | chr1_1:9782312-9782331 | None:intergenic | 35.0% | |
| !! | GCAGTTAGTGGATTAAATAG+GGG | + | chr1_1:9782317-9782336 | Msa0006770:intron | 35.0% |
| TATCAATGAATGTGGAACAG+AGG | + | chr1_1:9782355-9782374 | Msa0006770:intron | 35.0% | |
| ATCAATGAATGTGGAACAGA+GGG | + | chr1_1:9782356-9782375 | Msa0006770:intron | 35.0% | |
| TGCTGACAATTGACAAAGAA+AGG | - | chr1_1:9782446-9782465 | None:intergenic | 35.0% | |
| ! | TGAGCAATCTTTTCTGATCT+TGG | + | chr1_1:9782511-9782530 | Msa0006770:intron | 35.0% |
| ! | GAGCAATCTTTTCTGATCTT+GGG | + | chr1_1:9782512-9782531 | Msa0006770:intron | 35.0% |
| ! | TACGTATAATTTTACCACCG+GGG | + | chr1_1:9782668-9782687 | Msa0006770:intron | 35.0% |
| CGAAATTTACAACACAGACA+AGG | - | chr1_1:9782716-9782735 | None:intergenic | 35.0% | |
| CTTCCAGTCATAAAATCACT+CGG | - | chr1_1:9782811-9782830 | None:intergenic | 35.0% | |
| AGGTGAAAATTGCAGACATA+TGG | - | chr1_1:9782915-9782934 | None:intergenic | 35.0% | |
| AGGTGAAAATTGCAGACATA+TGG | - | chr1_1:9782915-9782934 | None:intergenic | 35.0% | |
| TCTTAGAAATGGAATACGCT+AGG | - | chr1_1:9783054-9783073 | None:intergenic | 35.0% | |
| !! | ACTTCTTATGTTTGCTATGC+AGG | + | chr1_1:9783077-9783096 | Msa0006770:intron | 35.0% |
| !! | ATATGGAGTTGATGACAGTA+GGG | + | chr1_1:9783136-9783155 | Msa0006770:CDS | 35.0% |
| !!! | AGGGAAATAGTGGATTTTCA+TGG | + | chr1_1:9783159-9783178 | Msa0006770:CDS | 35.0% |
| TATAGTGCACTTAACTACAC+AGG | + | chr1_1:9783204-9783223 | Msa0006770:CDS | 35.0% | |
| CAGCTTAAAATTCATGCACA+GGG | - | chr1_1:9783244-9783263 | None:intergenic | 35.0% | |
| TCAGCTTAAAATTCATGCAC+AGG | - | chr1_1:9783245-9783264 | None:intergenic | 35.0% | |
| ! | ACAGATTCTTTTTGCCTCAT+AGG | + | chr1_1:9783264-9783283 | Msa0006770:intron | 35.0% |
| CCATATGTTACTATCCTATG+AGG | - | chr1_1:9783281-9783300 | None:intergenic | 35.0% | |
| CCTCATAGGATAGTAACATA+TGG | + | chr1_1:9783278-9783297 | Msa0006770:intron | 35.0% | |
| TCATATGCTCAACTTAAACG+CGG | - | chr1_1:9783349-9783368 | None:intergenic | 35.0% | |
| GAACCAATGAGAAATGAGTT+TGG | + | chr1_1:9783425-9783444 | Msa0006770:intron | 35.0% | |
| TTGCATTTCTAAACTGAGTC+AGG | + | chr1_1:9783671-9783690 | Msa0006770:intron | 35.0% | |
| TGCATTTCTAAACTGAGTCA+GGG | + | chr1_1:9783672-9783691 | Msa0006770:intron | 35.0% | |
| ! | GCTTCTCTAATGGTTTTCTT+AGG | + | chr1_1:9783880-9783899 | Msa0006770:intron | 35.0% |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_1:9783935-9783954 | None:intergenic | 35.0% | |
| ! | TCTTCTTGTTTGTCAGTAGA+TGG | + | chr1_1:9783972-9783991 | Msa0006770:intron | 35.0% |
| ! | CTTCTTGTTTGTCAGTAGAT+GGG | + | chr1_1:9783973-9783992 | Msa0006770:intron | 35.0% |
| GGTGCATAAAATCAAGTGAA+TGG | + | chr1_1:9783994-9784013 | Msa0006770:intron | 35.0% | |
| GAAAGATGACTTCTTTGACT+AGG | + | chr1_1:9784068-9784087 | Msa0006770:intron | 35.0% | |
| ATGACTTCTTTGACTAGGTT+GGG | + | chr1_1:9784073-9784092 | Msa0006770:intron | 35.0% | |
| !!! | AGCACATCGATTTTGAAGAA+TGG | - | chr1_1:9784240-9784259 | None:intergenic | 35.0% |
| ! | AGCATTATTTTCCCCAAAAG+TGG | + | chr1_1:9784294-9784313 | Msa0006770:CDS | 35.0% |
| ! | GCATTATTTTCCCCAAAAGT+GGG | + | chr1_1:9784295-9784314 | Msa0006770:CDS | 35.0% |
| ! | ATCAACTAGTGAGGTTTTTG+AGG | + | chr1_1:9784335-9784354 | Msa0006770:CDS | 35.0% |
| ACTTTCCGAGATCCAAAATA+TGG | + | chr1_1:9784422-9784441 | Msa0006770:CDS | 35.0% | |
| !! | GTTCTCCATATTTTGGATCT+CGG | - | chr1_1:9784430-9784449 | None:intergenic | 35.0% |
| ! | GATACTCTGAAAGAGATTAG+GGG | + | chr1_1:9784480-9784499 | Msa0006770:CDS | 35.0% |
| TCAATGAATGTGGAACAGAG+GGG | + | chr1_1:9782357-9782376 | Msa0006770:intron | 40.0% | |
| ! | TCTTTTCTGATCTTGGGAGT+TGG | + | chr1_1:9782518-9782537 | Msa0006770:intron | 40.0% |
| ! | CTTTTCTGATCTTGGGAGTT+GGG | + | chr1_1:9782519-9782538 | Msa0006770:intron | 40.0% |
| ! | TAGCCGAGTGATTTTATGAC+TGG | + | chr1_1:9782805-9782824 | Msa0006770:intron | 40.0% |
| TGGTGTAACAATGCAGAACA+AGG | - | chr1_1:9782990-9783009 | None:intergenic | 40.0% | |
| TCTCTGTGACATGGAAAAGT+TGG | - | chr1_1:9783010-9783029 | None:intergenic | 40.0% | |
| AATTGCAAGACAAAGTTGCC+TGG | + | chr1_1:9783100-9783119 | Msa0006770:CDS | 40.0% | |
| ATTGCAAGACAAAGTTGCCT+GGG | + | chr1_1:9783101-9783120 | Msa0006770:CDS | 40.0% | |
| CAACTCCATATCAGAACTCT+TGG | - | chr1_1:9783127-9783146 | None:intergenic | 40.0% | |
| !! | GATATGGAGTTGATGACAGT+AGG | + | chr1_1:9783135-9783154 | Msa0006770:CDS | 40.0% |
| !! | AGTGGATTTTCATGGAGAGA+TGG | + | chr1_1:9783167-9783186 | Msa0006770:CDS | 40.0% |
| GGTCCAAACTCATTTCTCAT+TGG | - | chr1_1:9783431-9783450 | None:intergenic | 40.0% | |
| GAAATGAGTTTGGACCTCTA+AGG | + | chr1_1:9783435-9783454 | Msa0006770:intron | 40.0% | |
| CAATGAGCTGGATCCAAATA+TGG | - | chr1_1:9783839-9783858 | None:intergenic | 40.0% | |
| AGATTTAGAGGTCAATGAGC+TGG | - | chr1_1:9783851-9783870 | None:intergenic | 40.0% | |
| ! | TTCCTCTACCTCTTTTAACC+TGG | + | chr1_1:9783905-9783924 | Msa0006770:intron | 40.0% |
| TCTTCTTACAACGGCATCTA+CGG | + | chr1_1:9783948-9783967 | Msa0006770:intron | 40.0% | |
| ATAGGAAAACTAGGGTGTGT+AGG | + | chr1_1:9784036-9784055 | Msa0006770:intron | 40.0% | |
| GATGACTTCTTTGACTAGGT+TGG | + | chr1_1:9784072-9784091 | Msa0006770:intron | 40.0% | |
| !!! | CATCGATTTTGAAGAATGGC+TGG | - | chr1_1:9784236-9784255 | None:intergenic | 40.0% |
| TGTGCTTAACAAGCTTGTGA+AGG | + | chr1_1:9784254-9784273 | Msa0006770:CDS | 40.0% | |
| GCAATCCTTATCAACTAGTG+AGG | + | chr1_1:9784326-9784345 | Msa0006770:CDS | 40.0% | |
| CTTAGTTTCATTTGCAGTCG+TGG | - | chr1_1:9784376-9784395 | None:intergenic | 40.0% | |
| CACGACTGCAAATGAAACTA+AGG | + | chr1_1:9784374-9784393 | Msa0006770:CDS | 40.0% | |
| ! | GGATCTCGGAAAGTTCTTTT+GGG | - | chr1_1:9784416-9784435 | None:intergenic | 40.0% |
| ! | TGGATCTCGGAAAGTTCTTT+TGG | - | chr1_1:9784417-9784436 | None:intergenic | 40.0% |
| TGAAGGAGAGGTTACGAAAG+AGG | + | chr1_1:9781720-9781739 | Msa0006770:CDS | 45.0% | |
| CAATGAATGTGGAACAGAGG+GGG | + | chr1_1:9782358-9782377 | Msa0006770:intron | 45.0% | |
| TGGTGTGACTATGCAGAACA+AGG | - | chr1_1:9782935-9782954 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_1:9783769-9783788 | Msa0006770:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_1:9783770-9783789 | Msa0006770:intron | 45.0% |
| AGCCAGGTTAAAAGAGGTAG+AGG | - | chr1_1:9783910-9783929 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr1_1:9783949-9783968 | Msa0006770:intron | 45.0% | |
| TCTTCTCTCATTCTGTGTGC+AGG | + | chr1_1:9784132-9784151 | Msa0006770:intron | 45.0% | |
| TCTCATTCTGTGTGCAGGTT+TGG | + | chr1_1:9784137-9784156 | Msa0006770:intron | 45.0% | |
| ! | ATGGCTGGTTCAAGACATCT+TGG | - | chr1_1:9784221-9784240 | None:intergenic | 45.0% |
| ! | GTTGATAAGGATTGCCCTAG+AGG | - | chr1_1:9784321-9784340 | None:intergenic | 45.0% |
| !!! | CGGAAAGTTCTTTTGGGACA+TGG | - | chr1_1:9784410-9784429 | None:intergenic | 45.0% |
| ! | ACTCTGAAAGAGATTAGGGG+TGG | + | chr1_1:9784483-9784502 | Msa0006770:CDS | 45.0% |
| TTCTTCGAAACGGCGTCGTT+TGG | + | chr1_1:9781681-9781700 | Msa0006770:CDS | 50.0% | |
| CATGGGTCGTTGTTTGCTCT+TGG | + | chr1_1:9782408-9782427 | Msa0006770:intron | 50.0% | |
| ATCTTGGGAGTTGGGACTGT+TGG | + | chr1_1:9782527-9782546 | Msa0006770:intron | 50.0% | |
| !! | CAACACAGACAAGGAGCATC+AGG | - | chr1_1:9782707-9782726 | None:intergenic | 50.0% |
| AGACGTGACTCCTTGAGATG+TGG | + | chr1_1:9783027-9783046 | Msa0006770:intron | 50.0% | |
| TACGCTAGGTCCACATCTCA+AGG | - | chr1_1:9783040-9783059 | None:intergenic | 50.0% | |
| CATATCAGAACTCTTGGCCC+AGG | - | chr1_1:9783121-9783140 | None:intergenic | 50.0% | |
| ! | CTGGGCCAAGAGTTCTGATA+TGG | + | chr1_1:9783119-9783138 | Msa0006770:CDS | 50.0% |
| !! | TGGAGTTGATGACAGTAGGG+AGG | + | chr1_1:9783139-9783158 | Msa0006770:CDS | 50.0% |
| !! | GGAGTTGATGACAGTAGGGA+GGG | + | chr1_1:9783140-9783159 | Msa0006770:CDS | 50.0% |
| GACAGTAGGGAGGGAAATAG+TGG | + | chr1_1:9783149-9783168 | Msa0006770:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_1:9783771-9783790 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_1:9783768-9783787 | Msa0006770:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_1:9783774-9783793 | Msa0006770:intron | 50.0% | |
| GAGGAGAGCCAGGTTAAAAG+AGG | - | chr1_1:9783916-9783935 | None:intergenic | 50.0% | |
| AGATCAAATGGAGGAGAGCC+AGG | - | chr1_1:9783926-9783945 | None:intergenic | 50.0% | |
| ACTAGGGTGTGTAGGACAGT+AGG | + | chr1_1:9784044-9784063 | Msa0006770:intron | 50.0% | |
| AGCGAACTGGTGCACTACTT+CGG | + | chr1_1:9784184-9784203 | Msa0006770:CDS | 50.0% | |
| ! | CAAGCTTGTGAAGGAGTGTG+AGG | + | chr1_1:9784263-9784282 | Msa0006770:CDS | 50.0% |
| AAAGTCTCGCTATGCAGAGG+AGG | - | chr1_1:9784537-9784556 | None:intergenic | 50.0% | |
| TCCTCTGCATAGCGAGACTT+TGG | + | chr1_1:9784536-9784555 | Msa0006770:CDS | 50.0% | |
| ACCAAAGTCTCGCTATGCAG+AGG | - | chr1_1:9784540-9784559 | None:intergenic | 50.0% | |
| GCATAGCGAGACTTTGGTAG+AGG | + | chr1_1:9784542-9784561 | Msa0006770:CDS | 50.0% | |
| GAAACGGCGTCGTTTGGATG+AGG | + | chr1_1:9781687-9781706 | Msa0006770:CDS | 55.0% | |
| CGTCGTTTGGATGAGGATGG+TGG | + | chr1_1:9781694-9781713 | Msa0006770:CDS | 55.0% | |
| ! | GATGAGGATGGTGGTGCTGA+AGG | + | chr1_1:9781703-9781722 | Msa0006770:CDS | 55.0% |
| GGGTCGTTGTTTGCTCTTGG+TGG | + | chr1_1:9782411-9782430 | Msa0006770:intron | 55.0% | |
| TTGGGAGTTGGGACTGTTGG+TGG | + | chr1_1:9782530-9782549 | Msa0006770:intron | 55.0% | |
| ! | GAGTTGGGACTGTTGGTGGA+AGG | + | chr1_1:9782534-9782553 | Msa0006770:intron | 55.0% |
| !! | ACAAGGAGCATCAGGCCCTT+GGG | - | chr1_1:9782699-9782718 | None:intergenic | 55.0% |
| GGAGTCACGTCTCTGTGACA+TGG | - | chr1_1:9783019-9783038 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_1:9783776-9783795 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_1:9783782-9783801 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_1:9783783-9783802 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_1:9783782-9783801 | Msa0006770:intron | 55.0% | |
| TTCCCCAAAAGTGGGCCTCT+AGG | + | chr1_1:9784303-9784322 | Msa0006770:CDS | 55.0% | |
| TCCCCAAAAGTGGGCCTCTA+GGG | + | chr1_1:9784304-9784323 | Msa0006770:CDS | 55.0% | |
| !! | TGCCCTAGAGGCCCACTTTT+GGG | - | chr1_1:9784309-9784328 | None:intergenic | 55.0% |
| ! | TTGCCCTAGAGGCCCACTTT+TGG | - | chr1_1:9784310-9784329 | None:intergenic | 55.0% |
| CGGCGTCGTTTGGATGAGGA+TGG | + | chr1_1:9781691-9781710 | Msa0006770:CDS | 60.0% | |
| ! | GGATGGTGGTGCTGAAGGAG+AGG | + | chr1_1:9781708-9781727 | Msa0006770:CDS | 60.0% |
| !! | GACAAGGAGCATCAGGCCCT+TGG | - | chr1_1:9782700-9782719 | None:intergenic | 60.0% |
| !! | GCCCTAGAGGCCCACTTTTG+GGG | - | chr1_1:9784308-9784327 | None:intergenic | 60.0% |
| TACCACCGGGGTCTAGCCCA+AGG | + | chr1_1:9782680-9782699 | Msa0006770:intron | 65.0% | |
| ACCACCGGGGTCTAGCCCAA+GGG | + | chr1_1:9782681-9782700 | Msa0006770:intron | 65.0% | |
| ! | CAGGCCCTTGGGCTAGACCC+CGG | - | chr1_1:9782688-9782707 | None:intergenic | 70.0% |
| ! | GCCCTTGGGCTAGACCCCGG+TGG | - | chr1_1:9782685-9782704 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 9781625 | 9784569 | 9781625 | ID=Msa0006770;Name=Msa0006770 |
| chr1_1 | mRNA | 9781625 | 9784569 | 9781625 | ID=Msa0006770-mRNA-1;Parent=Msa0006770;Name=Msa0006770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|250 |
| chr1_1 | exon | 9781625 | 9781834 | 9781625 | ID=Msa0006770-mRNA-1:exon:3458;Parent=Msa0006770-mRNA-1 |
| chr1_1 | exon | 9783099 | 9783225 | 9783099 | ID=Msa0006770-mRNA-1:exon:3459;Parent=Msa0006770-mRNA-1 |
| chr1_1 | exon | 9784154 | 9784569 | 9784154 | ID=Msa0006770-mRNA-1:exon:3460;Parent=Msa0006770-mRNA-1 |
| chr1_1 | CDS | 9781625 | 9781834 | 9781625 | ID=Msa0006770-mRNA-1:cds;Parent=Msa0006770-mRNA-1 |
| chr1_1 | CDS | 9783099 | 9783225 | 9783099 | ID=Msa0006770-mRNA-1:cds;Parent=Msa0006770-mRNA-1 |
| chr1_1 | CDS | 9784154 | 9784569 | 9784154 | ID=Msa0006770-mRNA-1:cds;Parent=Msa0006770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
