Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007220 | sp|Q6NQH9|CID6_ARATH | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.50e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007220 | Msa0055580 | 0.974530 | 2.559396e-138 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007220 | MtrunA17_Chr1g0148571 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.68e-135 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007220 | AT5G25540.1 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0007220 | AT5G25540.3 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0007220 | AT5G11440.1 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0007220 | AT5G11440.2 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0007220 | AT5G25540.2 | 37.956 | 137 | 71 | 3 | 2 | 136 | 1 | 125 | 7.20e-18 | 76.3 |
Find 65 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGATTTGGAATATCTT+AGG | 0.249147 | 1_1:-10343367 | Msa0007220:CDS |
| GCAGAATCAGCTGGCATAAC+AGG | 0.299732 | 1_1:+10342118 | None:intergenic |
| CACCTAAAGTAAAACTTTCC+TGG | 0.300180 | 1_1:+10341962 | None:intergenic |
| GTACCTTGGTGAGCAACTTT+GGG | 0.318523 | 1_1:-10341692 | Msa0007220:three_prime_UTR |
| ATCAATTCACCATTCACATT+TGG | 0.324125 | 1_1:+10342029 | None:intergenic |
| GAAGATTCCAAGGACTATAA+TGG | 0.336500 | 1_1:-10343560 | Msa0007220:CDS |
| TGAAGAGCTTGATATTGATT+TGG | 0.356150 | 1_1:-10343378 | Msa0007220:CDS |
| TGTACCTTGGTGAGCAACTT+TGG | 0.360623 | 1_1:-10341693 | Msa0007220:three_prime_UTR |
| TTGCTACACACAATTGGTTT+TGG | 0.365984 | 1_1:-10342006 | Msa0007220:three_prime_UTR |
| TCTAACATTAGTGTCCCTTT+TGG | 0.366851 | 1_1:+10343595 | None:intergenic |
| CTTCCAGAGTCGCTGGATAT+TGG | 0.369329 | 1_1:-10342154 | Msa0007220:CDS |
| TATCTTAGGATGACATTTCC+TGG | 0.384113 | 1_1:-10343353 | Msa0007220:CDS |
| TTTCAATTGTATGAATTTGA+AGG | 0.416754 | 1_1:-10341819 | Msa0007220:three_prime_UTR |
| ATTGATTTGCTACACACAAT+TGG | 0.422783 | 1_1:-10342012 | Msa0007220:three_prime_UTR |
| AAGATTCCAAGGACTATAAT+GGG | 0.425801 | 1_1:-10343559 | Msa0007220:CDS |
| TGCTCACCAAGGTACAATTC+AGG | 0.425971 | 1_1:+10341700 | None:intergenic |
| GCTGACAGAGAATCAGTATA+TGG | 0.429347 | 1_1:-10343402 | Msa0007220:CDS |
| GACAAGTTGCACATCATTTG+TGG | 0.436093 | 1_1:+10343508 | None:intergenic |
| TTTCTCTATCTGCTTCGCTT+TGG | 0.436888 | 1_1:-10344254 | Msa0007220:intron |
| TACAGTCCCATTATAGTCCT+TGG | 0.442789 | 1_1:+10343553 | None:intergenic |
| GGAACGTACGCAGCTGCATA+TGG | 0.448700 | 1_1:+10343623 | None:intergenic |
| CGTACGTTCCTATGGCCAAA+AGG | 0.452015 | 1_1:-10343610 | Msa0007220:CDS |
| CAATGTAAACAGTGGTGACT+TGG | 0.452279 | 1_1:-10343300 | Msa0007220:CDS |
| AACGCTCAAAGGCTCTCTCC+GGG | 0.456586 | 1_1:-10343479 | Msa0007220:CDS |
| GAACGCTCAAAGGCTCTCTC+CGG | 0.458973 | 1_1:-10343480 | Msa0007220:CDS |
| ACATCATTTGTGGTATATTG+AGG | 0.475780 | 1_1:+10343518 | None:intergenic |
| TCACCAATATCCAGCGACTC+TGG | 0.486657 | 1_1:+10342151 | None:intergenic |
| TGCAGCTGCGTACGTTCCTA+TGG | 0.491027 | 1_1:-10343618 | Msa0007220:CDS |
| AGGACTATAATGGGACTGTA+TGG | 0.501746 | 1_1:-10343550 | Msa0007220:CDS |
| AAGGCCAGTGAAAACAAAGT+TGG | 0.509045 | 1_1:-10341800 | Msa0007220:three_prime_UTR |
| TTTAAGATTATACCTCAAGT+TGG | 0.519886 | 1_1:+10343255 | None:intergenic |
| TGGAAGTCTTCCAGAGTCGC+TGG | 0.520324 | 1_1:-10342161 | Msa0007220:CDS |
| AAACAAAAGAATGCAACAGC+TGG | 0.520914 | 1_1:-10342088 | Msa0007220:CDS |
| TACCTTGGTGAGCAACTTTG+GGG | 0.523031 | 1_1:-10341691 | Msa0007220:three_prime_UTR |
| CAAGTGATGAGATGAAGTAC+TGG | 0.526656 | 1_1:+10342063 | None:intergenic |
| AATTGATTTCCAAATGTGAA+TGG | 0.529082 | 1_1:-10342038 | Msa0007220:three_prime_UTR |
| GAAAAGTAAGAGCTCGAAGC+AGG | 0.531344 | 1_1:+10343446 | None:intergenic |
| TTTGATGAAGCAGAATCAGC+TGG | 0.536524 | 1_1:+10342109 | None:intergenic |
| TTAGGAAGAACAAGACAAGA+AGG | 0.539994 | 1_1:-10343703 | Msa0007220:intron |
| AAGGGAAAACCACCTTCACT+TGG | 0.548208 | 1_1:+10341749 | None:intergenic |
| TTTCCCTTGGGATAGATAGG+TGG | 0.551341 | 1_1:-10341734 | Msa0007220:three_prime_UTR |
| TTACTGCCTGAATTGTACCT+TGG | 0.554744 | 1_1:-10341706 | Msa0007220:three_prime_UTR |
| AGTAAGAGCTCGAAGCAGGC+TGG | 0.559139 | 1_1:+10343450 | None:intergenic |
| GTACGTTCCTATGGCCAAAA+GGG | 0.559981 | 1_1:-10343609 | Msa0007220:CDS |
| GGATTCAAAGAAGACTTTCG+CGG | 0.573737 | 1_1:+10343644 | None:intergenic |
| GATGATGCTGTTGACGCTCA+TGG | 0.575449 | 1_1:-10342181 | Msa0007220:CDS |
| TTGTCGAGAAGAACGCTCAA+AGG | 0.582696 | 1_1:-10343490 | Msa0007220:CDS |
| TTGAGAGCGATCTGATCGAA+AGG | 0.592377 | 1_1:+10344297 | None:intergenic |
| TTACATTGTAGACATCTACA+AGG | 0.595095 | 1_1:+10343315 | None:intergenic |
| CAAGCCACCTATCTATCCCA+AGG | 0.606070 | 1_1:+10341730 | None:intergenic |
| TAGGAAGAACAAGACAAGAA+GGG | 0.606483 | 1_1:-10343702 | Msa0007220:five_prime_UTR |
| AATACATATCCAAGTGAAGG+TGG | 0.607758 | 1_1:-10341758 | Msa0007220:three_prime_UTR |
| AGCAAAACAAGACACGGCTG+AGG | 0.610759 | 1_1:+10341903 | None:intergenic |
| TCATTTGTGGTATATTGAGG+AGG | 0.614473 | 1_1:+10343521 | None:intergenic |
| TTATGTGACAGAAGATTCCA+AGG | 0.616516 | 1_1:-10343570 | Msa0007220:CDS |
| GTCAGCTGTGCCACACTCTG+TGG | 0.634116 | 1_1:+10343419 | None:intergenic |
| GATATAAATAGTGTAAAACC+AGG | 0.659196 | 1_1:-10341980 | Msa0007220:three_prime_UTR |
| AAGCCACCTATCTATCCCAA+GGG | 0.661101 | 1_1:+10341731 | None:intergenic |
| TGAGATGCTAAGCCAACTTG+AGG | 0.661491 | 1_1:-10343267 | Msa0007220:intron |
| TACATTGTAGACATCTACAA+GGG | 0.670208 | 1_1:+10343316 | None:intergenic |
| AGGGACTCATCAGATATACC+AGG | 0.671666 | 1_1:+10343335 | None:intergenic |
| AACCCCAAAGTTGCTCACCA+AGG | 0.672047 | 1_1:+10341689 | None:intergenic |
| ACGCTCAAAGGCTCTCTCCG+GGG | 0.694097 | 1_1:-10343478 | Msa0007220:CDS |
| ATATTAAGCAAAACAAGACA+CGG | 0.699341 | 1_1:+10341897 | None:intergenic |
| GATGTCTACAATGTAAACAG+TGG | 0.761880 | 1_1:-10343308 | Msa0007220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTGATTTTCTT+AGG | - | chr1_1:10342222-10342241 | Msa0007220:intron | 10.0% |
| !! | AAAGTTATAATCTTTGTAAA+TGG | - | chr1_1:10342056-10342075 | Msa0007220:exon | 15.0% |
| !! | AAGTTATAATCTTTGTAAAT+GGG | - | chr1_1:10342057-10342076 | Msa0007220:exon | 15.0% |
| !!! | TTTTGCATATATGAATTTTT+TGG | - | chr1_1:10342128-10342147 | Msa0007220:CDS | 15.0% |
| !!! | ATCTTAAAATTATTAGCTTT+TGG | - | chr1_1:10342703-10342722 | Msa0007220:intron | 15.0% |
| !!! | TCTTAAAATTATTAGCTTTT+GGG | - | chr1_1:10342704-10342723 | Msa0007220:intron | 15.0% |
| !! | AAATATAATTGTAACTATCA+AGG | - | chr1_1:10342987-10343006 | Msa0007220:intron | 15.0% |
| !! | ATATAAATATCAAGACAATA+TGG | + | chr1_1:10343250-10343269 | None:intergenic | 15.0% |
| !!! | TACTGTTTTGTTTGATTTAA+TGG | - | chr1_1:10341841-10341860 | Msa0007220:three_prime_UTR | 20.0% |
| !!! | ATTTTTGTTTATCTTGATCT+TGG | - | chr1_1:10341927-10341946 | Msa0007220:three_prime_UTR | 20.0% |
| !!! | ATTTTTTGGTTTTGAATCTT+TGG | - | chr1_1:10342142-10342161 | Msa0007220:CDS | 20.0% |
| !!! | ATATTGATTTGGAATATCTT+AGG | - | chr1_1:10342576-10342595 | Msa0007220:intron | 20.0% |
| !! | TGATTGGAATATATGAAAAA+AGG | + | chr1_1:10342755-10342774 | None:intergenic | 20.0% |
| !! | TTATATTTATAAATCCCGAA+TGG | + | chr1_1:10342975-10342994 | None:intergenic | 20.0% |
| !! | TTATATATGCAGATGAAAAT+AGG | - | chr1_1:10343505-10343524 | Msa0007220:CDS | 20.0% |
| !! | AAAAACAAACTCTCAAAAAT+TGG | + | chr1_1:10343727-10343746 | None:intergenic | 20.0% |
| !! | TTTCAATTGTATGAATTTGA+AGG | - | chr1_1:10344124-10344143 | Msa0007220:intron | 20.0% |
| ! | TAAAATAACAGCGATTTGAA+GGG | + | chr1_1:10341727-10341746 | None:intergenic | 25.0% |
| ! | ATAAAATAACAGCGATTTGA+AGG | + | chr1_1:10341728-10341747 | None:intergenic | 25.0% |
| ! | TTGATCTTGGAAATGTTTAA+AGG | - | chr1_1:10341940-10341959 | Msa0007220:three_prime_UTR | 25.0% |
| ! | TGATCTTGGAAATGTTTAAA+GGG | - | chr1_1:10341941-10341960 | Msa0007220:three_prime_UTR | 25.0% |
| ! | AAGTTCTTGATATGATTTCA+TGG | - | chr1_1:10342031-10342050 | Msa0007220:three_prime_UTR | 25.0% |
| ! | AAAAATCAATAGCTAAAGCA+TGG | + | chr1_1:10342112-10342131 | None:intergenic | 25.0% |
| !! | TTTAAGATTATACCTCAAGT+TGG | + | chr1_1:10342691-10342710 | None:intergenic | 25.0% |
| ! | AATAAGAAGTTATCATCTTG+TGG | - | chr1_1:10343157-10343176 | Msa0007220:intron | 25.0% |
| !!! | ACATGTTCAGTTTTTGTTTT+AGG | - | chr1_1:10343400-10343419 | Msa0007220:CDS | 25.0% |
| !! | CTGATTTGAATCTAGTATAT+AGG | - | chr1_1:10343452-10343471 | Msa0007220:CDS | 25.0% |
| ! | TACTCTCATAATCATGTTAA+TGG | - | chr1_1:10343671-10343690 | Msa0007220:exon | 25.0% |
| !! | AATTGATTTCCAAATGTGAA+TGG | - | chr1_1:10343905-10343924 | Msa0007220:intron | 25.0% |
| ! | GATATAAATAGTGTAAAACC+AGG | - | chr1_1:10343963-10343982 | Msa0007220:intron | 25.0% |
| ! | ATATTAAGCAAAACAAGACA+CGG | + | chr1_1:10344049-10344068 | None:intergenic | 25.0% |
| !! | TATTTTTCTTCTAACTCGTT+TGG | + | chr1_1:10344169-10344188 | None:intergenic | 25.0% |
| ! | AAAAATACATATCCAAGTGA+AGG | - | chr1_1:10344182-10344201 | Msa0007220:intron | 25.0% |
| !!! | TTCTTTTCAGTTTTGTTTGA+TGG | - | chr1_1:10344313-10344332 | Msa0007220:five_prime_UTR | 25.0% |
| AGATCGCTCTCAAAAAATTA+GGG | - | chr1_1:10341656-10341675 | Msa0007220:three_prime_UTR | 30.0% | |
| GATCTTGGAAATGTTTAAAG+GGG | - | chr1_1:10341942-10341961 | Msa0007220:three_prime_UTR | 30.0% | |
| ATCTTGGAAATGTTTAAAGG+GGG | - | chr1_1:10341943-10341962 | Msa0007220:three_prime_UTR | 30.0% | |
| AAGATTCCAAGGACTATAAT+GGG | - | chr1_1:10342384-10342403 | Msa0007220:intron | 30.0% | |
| ACATCATTTGTGGTATATTG+AGG | + | chr1_1:10342428-10342447 | None:intergenic | 30.0% | |
| ! | TGAAGAGCTTGATATTGATT+TGG | - | chr1_1:10342565-10342584 | Msa0007220:intron | 30.0% |
| TACATTGTAGACATCTACAA+GGG | + | chr1_1:10342630-10342649 | None:intergenic | 30.0% | |
| TTACATTGTAGACATCTACA+AGG | + | chr1_1:10342631-10342650 | None:intergenic | 30.0% | |
| ATTACAGTCACTTAACTGAT+TGG | + | chr1_1:10342771-10342790 | None:intergenic | 30.0% | |
| GACTGTAATTGTAACTATCA+AGG | - | chr1_1:10342782-10342801 | Msa0007220:intron | 30.0% | |
| ! | TTCGATTTGACTGGAAAATT+TGG | - | chr1_1:10342823-10342842 | Msa0007220:intron | 30.0% |
| TTTGACTGGAAAATTTGGTT+AGG | - | chr1_1:10342828-10342847 | Msa0007220:intron | 30.0% | |
| ATAAAAGTCACTGAACTGAT+TGG | + | chr1_1:10342872-10342891 | None:intergenic | 30.0% | |
| ! | TCAGTTCAGTGACTTTTATT+CGG | - | chr1_1:10342873-10342892 | Msa0007220:intron | 30.0% |
| CATAATTTCCAGTCAATTTG+TGG | + | chr1_1:10343030-10343049 | None:intergenic | 30.0% | |
| CACAAATTGACTGGAAATTA+TGG | - | chr1_1:10343028-10343047 | Msa0007220:intron | 30.0% | |
| ATTGACTGGAAATTATGGTT+AGG | - | chr1_1:10343033-10343052 | Msa0007220:intron | 30.0% | |
| TTAGGATGTGTAGTTAAATG+TGG | - | chr1_1:10343051-10343070 | Msa0007220:intron | 30.0% | |
| AAACAAACATACCAGGAAAT+GGG | + | chr1_1:10343287-10343306 | None:intergenic | 30.0% | |
| AAAACAAACATACCAGGAAA+TGG | + | chr1_1:10343288-10343307 | None:intergenic | 30.0% | |
| AGTCTTAAAACAAACATACC+AGG | + | chr1_1:10343294-10343313 | None:intergenic | 30.0% | |
| !!! | GGTATGTTTGTTTTAAGACT+TGG | - | chr1_1:10343294-10343313 | Msa0007220:CDS | 30.0% |
| !!! | TTTAAGACTTGGTGTTTTTC+TGG | - | chr1_1:10343305-10343324 | Msa0007220:CDS | 30.0% |
| !!! | TGTTCAGTTTTTGTTTTAGG+TGG | - | chr1_1:10343403-10343422 | Msa0007220:CDS | 30.0% |
| ! | ACTTCTTTGCTGATTAATGT+TGG | - | chr1_1:10343552-10343571 | Msa0007220:CDS | 30.0% |
| ATCAATTCACCATTCACATT+TGG | + | chr1_1:10343917-10343936 | None:intergenic | 30.0% | |
| !! | ATTGATTTGCTACACACAAT+TGG | - | chr1_1:10343931-10343950 | Msa0007220:intron | 30.0% |
| ! | AACCAGGAAAGTTTTACTTT+AGG | - | chr1_1:10343979-10343998 | Msa0007220:intron | 30.0% |
| !!! | GTGTCTTGTTTTGCTTAATA+TGG | - | chr1_1:10344048-10344067 | Msa0007220:intron | 30.0% |
| ! | ATGTTCTCTTTTTGATGAGT+TGG | - | chr1_1:10344077-10344096 | Msa0007220:intron | 30.0% |
| CAGATCGCTCTCAAAAAATT+AGG | - | chr1_1:10341655-10341674 | Msa0007220:three_prime_UTR | 35.0% | |
| AATCAATAGCTAAAGCATGG+TGG | + | chr1_1:10342109-10342128 | None:intergenic | 35.0% | |
| TTAGGAAGAACAAGACAAGA+AGG | - | chr1_1:10342240-10342259 | Msa0007220:intron | 35.0% | |
| TAGGAAGAACAAGACAAGAA+GGG | - | chr1_1:10342241-10342260 | Msa0007220:intron | 35.0% | |
| ! | TCTAACATTAGTGTCCCTTT+TGG | + | chr1_1:10342351-10342370 | None:intergenic | 35.0% |
| TTATGTGACAGAAGATTCCA+AGG | - | chr1_1:10342373-10342392 | Msa0007220:intron | 35.0% | |
| GAAGATTCCAAGGACTATAA+TGG | - | chr1_1:10342383-10342402 | Msa0007220:intron | 35.0% | |
| TCATTTGTGGTATATTGAGG+AGG | + | chr1_1:10342425-10342444 | None:intergenic | 35.0% | |
| TATCTTAGGATGACATTTCC+TGG | - | chr1_1:10342590-10342609 | Msa0007220:intron | 35.0% | |
| GATGTCTACAATGTAAACAG+TGG | - | chr1_1:10342635-10342654 | Msa0007220:intron | 35.0% | |
| ! | ATCATATGCTTCGATTTGAC+TGG | - | chr1_1:10342814-10342833 | Msa0007220:intron | 35.0% |
| CTGGAAAATTTGGTTAGGTT+AGG | - | chr1_1:10342833-10342852 | Msa0007220:intron | 35.0% | |
| ! | CAGTTCAGTGACTTTTATTC+GGG | - | chr1_1:10342874-10342893 | Msa0007220:intron | 35.0% |
| TGACTAGACTCTCATACATA+TGG | + | chr1_1:10342951-10342970 | None:intergenic | 35.0% | |
| ATCATATGCCACAAATTGAC+TGG | - | chr1_1:10343019-10343038 | Msa0007220:intron | 35.0% | |
| ! | GAAAAGAGTATACACAGGAA+GGG | + | chr1_1:10343101-10343120 | None:intergenic | 35.0% |
| TGTCATCTGAAGATAGTCTT+CGG | + | chr1_1:10343129-10343148 | None:intergenic | 35.0% | |
| AGACTATCTTCAGATGACAT+TGG | - | chr1_1:10343130-10343149 | Msa0007220:intron | 35.0% | |
| ! | AACCACAAAGCATTACACAT+GGG | + | chr1_1:10343351-10343370 | None:intergenic | 35.0% |
| !!! | CAGTTTTTGTTTTAGGTGGA+AGG | - | chr1_1:10343407-10343426 | Msa0007220:CDS | 35.0% |
| TTTGCGTAGAGAGAAAACTT+TGG | - | chr1_1:10343643-10343662 | Msa0007220:CDS | 35.0% | |
| AAACAAAAGAATGCAACAGC+TGG | - | chr1_1:10343855-10343874 | Msa0007220:intron | 35.0% | |
| !! | TTGCTACACACAATTGGTTT+TGG | - | chr1_1:10343937-10343956 | Msa0007220:intron | 35.0% |
| !!! | TACACACAATTGGTTTTGGT+TGG | - | chr1_1:10343941-10343960 | Msa0007220:intron | 35.0% |
| CACCTAAAGTAAAACTTTCC+TGG | + | chr1_1:10343984-10344003 | None:intergenic | 35.0% | |
| AATACATATCCAAGTGAAGG+TGG | - | chr1_1:10344185-10344204 | Msa0007220:intron | 35.0% | |
| TTTCTCTATCTGCTTCGCTT+TGG | - | chr1_1:10341689-10341708 | Msa0007220:three_prime_UTR | 40.0% | |
| GGATTCAAAGAAGACTTTCG+CGG | + | chr1_1:10342302-10342321 | None:intergenic | 40.0% | |
| TACAGTCCCATTATAGTCCT+TGG | + | chr1_1:10342393-10342412 | None:intergenic | 40.0% | |
| ! | AGGACTATAATGGGACTGTA+TGG | - | chr1_1:10342393-10342412 | Msa0007220:intron | 40.0% |
| GACAAGTTGCACATCATTTG+TGG | + | chr1_1:10342438-10342457 | None:intergenic | 40.0% | |
| GCTGACAGAGAATCAGTATA+TGG | - | chr1_1:10342541-10342560 | Msa0007220:intron | 40.0% | |
| CAATGTAAACAGTGGTGACT+TGG | - | chr1_1:10342643-10342662 | Msa0007220:intron | 40.0% | |
| TGAGAGTCTAGTCAACCATT+CGG | - | chr1_1:10342957-10342976 | Msa0007220:intron | 40.0% | |
| ! | GGAAAAGAGTATACACAGGA+AGG | + | chr1_1:10343102-10343121 | None:intergenic | 40.0% |
| ! | GAACGGAAAAGAGTATACAC+AGG | + | chr1_1:10343106-10343125 | None:intergenic | 40.0% |
| GTCATCTGAAGATAGTCTTC+GGG | + | chr1_1:10343128-10343147 | None:intergenic | 40.0% | |
| TTGTGGTTGTTGAATCTCAC+AGG | - | chr1_1:10343174-10343193 | Msa0007220:intron | 40.0% | |
| TGTGGTTGTTGAATCTCACA+GGG | - | chr1_1:10343175-10343194 | Msa0007220:intron | 40.0% | |
| ! | TTTTGTGCATTCCCATTTCC+TGG | - | chr1_1:10343273-10343292 | Msa0007220:CDS | 40.0% |
| TTCCCATGTGTAATGCTTTG+TGG | - | chr1_1:10343346-10343365 | Msa0007220:CDS | 40.0% | |
| ! | GAACCACAAAGCATTACACA+TGG | + | chr1_1:10343352-10343371 | None:intergenic | 40.0% |
| TTTGATGAAGCAGAATCAGC+TGG | + | chr1_1:10343837-10343856 | None:intergenic | 40.0% | |
| CAAGTGATGAGATGAAGTAC+TGG | + | chr1_1:10343883-10343902 | None:intergenic | 40.0% | |
| AAGGCCAGTGAAAACAAAGT+TGG | - | chr1_1:10344143-10344162 | Msa0007220:intron | 40.0% | |
| !!! | TTGGCCAACTTTGTTTTCAC+TGG | + | chr1_1:10344150-10344169 | None:intergenic | 40.0% |
| TTACTGCCTGAATTGTACCT+TGG | - | chr1_1:10344237-10344256 | Msa0007220:intron | 40.0% | |
| !!! | TGATGGTGTTTTGATGCTGA+TGG | - | chr1_1:10344330-10344349 | Msa0007220:five_prime_UTR | 40.0% |
| TTGAGAGCGATCTGATCGAA+AGG | + | chr1_1:10341649-10341668 | None:intergenic | 45.0% | |
| GTACGTTCCTATGGCCAAAA+GGG | - | chr1_1:10342334-10342353 | Msa0007220:intron | 45.0% | |
| ! | TTAGTGTCCCTTTTGGCCAT+AGG | + | chr1_1:10342344-10342363 | None:intergenic | 45.0% |
| TTGTCGAGAAGAACGCTCAA+AGG | - | chr1_1:10342453-10342472 | Msa0007220:intron | 45.0% | |
| GAAAAGTAAGAGCTCGAAGC+AGG | + | chr1_1:10342500-10342519 | None:intergenic | 45.0% | |
| ! | CTTTTCATCACCACAGAGTG+TGG | - | chr1_1:10342514-10342533 | Msa0007220:intron | 45.0% |
| AGGGACTCATCAGATATACC+AGG | + | chr1_1:10342611-10342630 | None:intergenic | 45.0% | |
| TGAGATGCTAAGCCAACTTG+AGG | - | chr1_1:10342676-10342695 | Msa0007220:intron | 45.0% | |
| GAGAGTCTAGTCAACCATTC+GGG | - | chr1_1:10342958-10342977 | Msa0007220:intron | 45.0% | |
| CTGAAGATAGTCTTCGGGAA+CGG | + | chr1_1:10343123-10343142 | None:intergenic | 45.0% | |
| TTGGTCGTTCATTCAGTTGC+TGG | - | chr1_1:10343571-10343590 | Msa0007220:CDS | 45.0% | |
| AAGGGAAAACCACCTTCACT+TGG | + | chr1_1:10344197-10344216 | None:intergenic | 45.0% | |
| ! | AAGTGAAGGTGGTTTTCCCT+TGG | - | chr1_1:10344196-10344215 | Msa0007220:intron | 45.0% |
| ! | AGTGAAGGTGGTTTTCCCTT+GGG | - | chr1_1:10344197-10344216 | Msa0007220:intron | 45.0% |
| ! | GGTTTTCCCTTGGGATAGAT+AGG | - | chr1_1:10344206-10344225 | Msa0007220:intron | 45.0% |
| TTTCCCTTGGGATAGATAGG+TGG | - | chr1_1:10344209-10344228 | Msa0007220:intron | 45.0% | |
| AAGCCACCTATCTATCCCAA+GGG | + | chr1_1:10344215-10344234 | None:intergenic | 45.0% | |
| TGCTCACCAAGGTACAATTC+AGG | + | chr1_1:10344246-10344265 | None:intergenic | 45.0% | |
| TGTACCTTGGTGAGCAACTT+TGG | - | chr1_1:10344250-10344269 | Msa0007220:intron | 45.0% | |
| GTACCTTGGTGAGCAACTTT+GGG | - | chr1_1:10344251-10344270 | Msa0007220:intron | 45.0% | |
| TACCTTGGTGAGCAACTTTG+GGG | - | chr1_1:10344252-10344271 | Msa0007220:intron | 45.0% | |
| CGTACGTTCCTATGGCCAAA+AGG | - | chr1_1:10342333-10342352 | Msa0007220:intron | 50.0% | |
| TGTTGAATCTCACAGGGTGC+TGG | - | chr1_1:10343181-10343200 | Msa0007220:intron | 50.0% | |
| GATGATGCTGTTGACGCTCA+TGG | - | chr1_1:10343762-10343781 | Msa0007220:intron | 50.0% | |
| CTTCCAGAGTCGCTGGATAT+TGG | - | chr1_1:10343789-10343808 | Msa0007220:intron | 50.0% | |
| TCACCAATATCCAGCGACTC+TGG | + | chr1_1:10343795-10343814 | None:intergenic | 50.0% | |
| GCAGAATCAGCTGGCATAAC+AGG | + | chr1_1:10343828-10343847 | None:intergenic | 50.0% | |
| AGCAAAACAAGACACGGCTG+AGG | + | chr1_1:10344043-10344062 | None:intergenic | 50.0% | |
| CAAGCCACCTATCTATCCCA+AGG | + | chr1_1:10344216-10344235 | None:intergenic | 50.0% | |
| AACCCCAAAGTTGCTCACCA+AGG | + | chr1_1:10344257-10344276 | None:intergenic | 50.0% | |
| GGAACGTACGCAGCTGCATA+TGG | + | chr1_1:10342323-10342342 | None:intergenic | 55.0% | |
| TGCAGCTGCGTACGTTCCTA+TGG | - | chr1_1:10342325-10342344 | Msa0007220:intron | 55.0% | |
| GAACGCTCAAAGGCTCTCTC+CGG | - | chr1_1:10342463-10342482 | Msa0007220:intron | 55.0% | |
| AACGCTCAAAGGCTCTCTCC+GGG | - | chr1_1:10342464-10342483 | Msa0007220:intron | 55.0% | |
| !!! | GAAGCAGGCTGGTTTTTCCC+CGG | + | chr1_1:10342485-10342504 | None:intergenic | 55.0% |
| AGTAAGAGCTCGAAGCAGGC+TGG | + | chr1_1:10342496-10342515 | None:intergenic | 55.0% | |
| !! | AATCTCACAGGGTGCTGGCT+AGG | - | chr1_1:10343186-10343205 | Msa0007220:intron | 55.0% |
| TGGAAGTCTTCCAGAGTCGC+TGG | - | chr1_1:10343782-10343801 | Msa0007220:intron | 55.0% | |
| ACGCTCAAAGGCTCTCTCCG+GGG | - | chr1_1:10342465-10342484 | Msa0007220:intron | 60.0% | |
| GTCAGCTGTGCCACACTCTG+TGG | + | chr1_1:10342527-10342546 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10341606 | 10344359 | 10341606 | ID=Msa0007220;Name=Msa0007220 |
| chr1_1 | mRNA | 10341606 | 10344359 | 10341606 | ID=Msa0007220-mRNA-1;Parent=Msa0007220;Name=Msa0007220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|0.5|0.33|3|454|184 |
| chr1_1 | exon | 10341606 | 10342206 | 10341606 | ID=Msa0007220-mRNA-1:exon:3787;Parent=Msa0007220-mRNA-1 |
| chr1_1 | exon | 10343268 | 10343721 | 10343268 | ID=Msa0007220-mRNA-1:exon:3786;Parent=Msa0007220-mRNA-1 |
| chr1_1 | exon | 10344255 | 10344359 | 10344255 | ID=Msa0007220-mRNA-1:exon:3785;Parent=Msa0007220-mRNA-1 |
| chr1_1 | five_prime_UTR | 10344255 | 10344359 | 10344255 | ID=Msa0007220-mRNA-1:five_prime_utr;Parent=Msa0007220-mRNA-1 |
| chr1_1 | five_prime_UTR | 10343676 | 10343721 | 10343676 | ID=Msa0007220-mRNA-1:five_prime_utr;Parent=Msa0007220-mRNA-1 |
| chr1_1 | CDS | 10343268 | 10343675 | 10343268 | ID=Msa0007220-mRNA-1:cds;Parent=Msa0007220-mRNA-1 |
| chr1_1 | CDS | 10342060 | 10342206 | 10342060 | ID=Msa0007220-mRNA-1:cds;Parent=Msa0007220-mRNA-1 |
| chr1_1 | three_prime_UTR | 10341606 | 10342059 | 10341606 | ID=Msa0007220-mRNA-1:three_prime_utr;Parent=Msa0007220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
