Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055580 | XP_003588667.1 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.83e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055580 | sp|Q6NQH9|CID6_ARATH | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.50e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055580 | G7I5S9 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 8.73e-132 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007220 | Msa0055580 | 0.974530 | 2.559396e-138 | -8.615850e-47 |
| Msa0055580 | Msa0055640 | 0.877620 | 5.430800e-69 | -8.615850e-47 |
| Msa0055580 | Msa0196670 | 0.800908 | 1.155959e-48 | -8.615850e-47 |
| Msa0055580 | Msa0276100 | 0.804318 | 2.287990e-49 | -8.615850e-47 |
| Msa0055580 | Msa1062040 | 0.803819 | 2.905880e-49 | -8.615850e-47 |
| Msa0055580 | Msa1107200 | 0.815743 | 7.904737e-52 | -8.615850e-47 |
| Msa0055580 | Msa1150780 | 0.828617 | 8.137639e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055580 | MtrunA17_Chr1g0148571 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.68e-135 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055580 | AT5G25540.1 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0055580 | AT5G25540.3 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0055580 | AT5G11440.1 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0055580 | AT5G11440.2 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0055580 | AT5G25540.2 | 37.956 | 137 | 71 | 3 | 2 | 136 | 1 | 125 | 7.20e-18 | 76.3 |
Find 65 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGATTTGGAATATCTT+AGG | 0.249147 | 1_2:-10673561 | Msa0055580:CDS |
| GCAGAATCAGCTGGCATAAC+AGG | 0.299732 | 1_2:+10672312 | None:intergenic |
| CACCTAAAGTAAAACTTTCC+TGG | 0.300180 | 1_2:+10672156 | None:intergenic |
| GTACCTTGGTGAGCAACTTT+GGG | 0.318523 | 1_2:-10671886 | Msa0055580:three_prime_UTR |
| ATCAATTCACCATTCACATT+TGG | 0.324125 | 1_2:+10672223 | None:intergenic |
| GAAGATTCCAAGGACTATAA+TGG | 0.336500 | 1_2:-10673754 | Msa0055580:CDS |
| TGAAGAGCTTGATATTGATT+TGG | 0.356150 | 1_2:-10673572 | Msa0055580:CDS |
| TGTACCTTGGTGAGCAACTT+TGG | 0.360623 | 1_2:-10671887 | Msa0055580:three_prime_UTR |
| TTGCTACACACAATTGGTTT+TGG | 0.365984 | 1_2:-10672200 | Msa0055580:three_prime_UTR |
| TCTAACATTAGTGTCCCTTT+TGG | 0.366851 | 1_2:+10673789 | None:intergenic |
| CTTCCAGAGTCGCTGGATAT+TGG | 0.369329 | 1_2:-10672348 | Msa0055580:CDS |
| TATCTTAGGATGACATTTCC+TGG | 0.384113 | 1_2:-10673547 | Msa0055580:CDS |
| TTTCAATTGTATGAATTTGA+AGG | 0.416754 | 1_2:-10672013 | Msa0055580:three_prime_UTR |
| ATTGATTTGCTACACACAAT+TGG | 0.422783 | 1_2:-10672206 | Msa0055580:three_prime_UTR |
| AAGATTCCAAGGACTATAAT+GGG | 0.425801 | 1_2:-10673753 | Msa0055580:CDS |
| TGCTCACCAAGGTACAATTC+AGG | 0.425971 | 1_2:+10671894 | None:intergenic |
| GCTGACAGAGAATCAGTATA+TGG | 0.429347 | 1_2:-10673596 | Msa0055580:CDS |
| GACAAGTTGCACATCATTTG+TGG | 0.436093 | 1_2:+10673702 | None:intergenic |
| TTTCTCTATCTGCTTCGCTT+TGG | 0.436888 | 1_2:-10674448 | Msa0055580:intron |
| TACAGTCCCATTATAGTCCT+TGG | 0.442789 | 1_2:+10673747 | None:intergenic |
| GGAACGTACGCAGCTGCATA+TGG | 0.448700 | 1_2:+10673817 | None:intergenic |
| CGTACGTTCCTATGGCCAAA+AGG | 0.452015 | 1_2:-10673804 | Msa0055580:CDS |
| CAATGTAAACAGTGGTGACT+TGG | 0.452279 | 1_2:-10673494 | Msa0055580:CDS |
| AACGCTCAAAGGCTCTCTCC+GGG | 0.456586 | 1_2:-10673673 | Msa0055580:CDS |
| GAACGCTCAAAGGCTCTCTC+CGG | 0.458973 | 1_2:-10673674 | Msa0055580:CDS |
| ACATCATTTGTGGTATATTG+AGG | 0.475780 | 1_2:+10673712 | None:intergenic |
| TCACCAATATCCAGCGACTC+TGG | 0.486657 | 1_2:+10672345 | None:intergenic |
| TGCAGCTGCGTACGTTCCTA+TGG | 0.491027 | 1_2:-10673812 | Msa0055580:CDS |
| AGGACTATAATGGGACTGTA+TGG | 0.501746 | 1_2:-10673744 | Msa0055580:CDS |
| AAGGCCAGTGAAAACAAAGT+TGG | 0.509045 | 1_2:-10671994 | Msa0055580:three_prime_UTR |
| TTTAAGATTATACCTCAAGT+TGG | 0.519886 | 1_2:+10673449 | None:intergenic |
| TGGAAGTCTTCCAGAGTCGC+TGG | 0.520324 | 1_2:-10672355 | Msa0055580:CDS |
| AAACAAAAGAATGCAACAGC+TGG | 0.520914 | 1_2:-10672282 | Msa0055580:CDS |
| TACCTTGGTGAGCAACTTTG+GGG | 0.523031 | 1_2:-10671885 | Msa0055580:three_prime_UTR |
| CAAGTGATGAGATGAAGTAC+TGG | 0.526656 | 1_2:+10672257 | None:intergenic |
| AATTGATTTCCAAATGTGAA+TGG | 0.529082 | 1_2:-10672232 | Msa0055580:three_prime_UTR |
| GAAAAGTAAGAGCTCGAAGC+AGG | 0.531344 | 1_2:+10673640 | None:intergenic |
| TTTGATGAAGCAGAATCAGC+TGG | 0.536524 | 1_2:+10672303 | None:intergenic |
| TTAGGAAGAACAAGACAAGA+AGG | 0.539994 | 1_2:-10673897 | Msa0055580:intron |
| AAGGGAAAACCACCTTCACT+TGG | 0.548208 | 1_2:+10671943 | None:intergenic |
| TTTCCCTTGGGATAGATAGG+TGG | 0.551341 | 1_2:-10671928 | Msa0055580:three_prime_UTR |
| TTACTGCCTGAATTGTACCT+TGG | 0.554744 | 1_2:-10671900 | Msa0055580:three_prime_UTR |
| AGTAAGAGCTCGAAGCAGGC+TGG | 0.559139 | 1_2:+10673644 | None:intergenic |
| GTACGTTCCTATGGCCAAAA+GGG | 0.559981 | 1_2:-10673803 | Msa0055580:CDS |
| GGATTCAAAGAAGACTTTCG+CGG | 0.573737 | 1_2:+10673838 | None:intergenic |
| GATGATGCTGTTGACGCTCA+TGG | 0.575449 | 1_2:-10672375 | Msa0055580:CDS |
| TTGTCGAGAAGAACGCTCAA+AGG | 0.582696 | 1_2:-10673684 | Msa0055580:CDS |
| TTGAGAGCGATCTGATCGAA+AGG | 0.592377 | 1_2:+10674491 | None:intergenic |
| TTACATTGTAGACATCTACA+AGG | 0.595095 | 1_2:+10673509 | None:intergenic |
| CAAGCCACCTATCTATCCCA+AGG | 0.606070 | 1_2:+10671924 | None:intergenic |
| TAGGAAGAACAAGACAAGAA+GGG | 0.606483 | 1_2:-10673896 | Msa0055580:five_prime_UTR |
| AATACATATCCAAGTGAAGG+TGG | 0.607758 | 1_2:-10671952 | Msa0055580:three_prime_UTR |
| AGCAAAACAAGACACGGCTG+AGG | 0.610759 | 1_2:+10672097 | None:intergenic |
| TCATTTGTGGTATATTGAGG+AGG | 0.614473 | 1_2:+10673715 | None:intergenic |
| TTATGTGACAGAAGATTCCA+AGG | 0.616516 | 1_2:-10673764 | Msa0055580:CDS |
| GTCAGCTGTGCCACACTCTG+TGG | 0.634116 | 1_2:+10673613 | None:intergenic |
| GATATAAATAGTGTAAAACC+AGG | 0.659196 | 1_2:-10672174 | Msa0055580:three_prime_UTR |
| AAGCCACCTATCTATCCCAA+GGG | 0.661101 | 1_2:+10671925 | None:intergenic |
| TGAGATGCTAAGCCAACTTG+AGG | 0.661491 | 1_2:-10673461 | Msa0055580:intron |
| TACATTGTAGACATCTACAA+GGG | 0.670208 | 1_2:+10673510 | None:intergenic |
| AGGGACTCATCAGATATACC+AGG | 0.671666 | 1_2:+10673529 | None:intergenic |
| AACCCCAAAGTTGCTCACCA+AGG | 0.672047 | 1_2:+10671883 | None:intergenic |
| ACGCTCAAAGGCTCTCTCCG+GGG | 0.694097 | 1_2:-10673672 | Msa0055580:CDS |
| ATATTAAGCAAAACAAGACA+CGG | 0.699341 | 1_2:+10672091 | None:intergenic |
| GATGTCTACAATGTAAACAG+TGG | 0.761880 | 1_2:-10673502 | Msa0055580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTGATTTTCTT+AGG | - | chr1_2:10672416-10672435 | Msa0055580:intron | 10.0% |
| !! | AAAGTTATAATCTTTGTAAA+TGG | - | chr1_2:10672250-10672269 | Msa0055580:exon | 15.0% |
| !! | AAGTTATAATCTTTGTAAAT+GGG | - | chr1_2:10672251-10672270 | Msa0055580:exon | 15.0% |
| !!! | TTTTGCATATATGAATTTTT+TGG | - | chr1_2:10672322-10672341 | Msa0055580:CDS | 15.0% |
| !!! | ATCTTAAAATTATTAGCTTT+TGG | - | chr1_2:10672897-10672916 | Msa0055580:intron | 15.0% |
| !!! | TCTTAAAATTATTAGCTTTT+GGG | - | chr1_2:10672898-10672917 | Msa0055580:intron | 15.0% |
| !! | AAATATAATTGTAACTATCA+AGG | - | chr1_2:10673181-10673200 | Msa0055580:intron | 15.0% |
| !! | ATATAAATATCAAGACAATA+TGG | + | chr1_2:10673444-10673463 | None:intergenic | 15.0% |
| !!! | TACTGTTTTGTTTGATTTAA+TGG | - | chr1_2:10672035-10672054 | Msa0055580:three_prime_UTR | 20.0% |
| !!! | ATTTTTGTTTATCTTGATCT+TGG | - | chr1_2:10672121-10672140 | Msa0055580:three_prime_UTR | 20.0% |
| !!! | ATTTTTTGGTTTTGAATCTT+TGG | - | chr1_2:10672336-10672355 | Msa0055580:CDS | 20.0% |
| !!! | ATATTGATTTGGAATATCTT+AGG | - | chr1_2:10672770-10672789 | Msa0055580:intron | 20.0% |
| !! | TGATTGGAATATATGAAAAA+AGG | + | chr1_2:10672949-10672968 | None:intergenic | 20.0% |
| !! | TTATATTTATAAATCCCGAA+TGG | + | chr1_2:10673169-10673188 | None:intergenic | 20.0% |
| !! | TTATATATGCAGATGAAAAT+AGG | - | chr1_2:10673699-10673718 | Msa0055580:CDS | 20.0% |
| !! | AAAAACAAACTCTCAAAAAT+TGG | + | chr1_2:10673921-10673940 | None:intergenic | 20.0% |
| !! | TTTCAATTGTATGAATTTGA+AGG | - | chr1_2:10674318-10674337 | Msa0055580:intron | 20.0% |
| ! | TAAAATAACAGCGATTTGAA+GGG | + | chr1_2:10671921-10671940 | None:intergenic | 25.0% |
| ! | ATAAAATAACAGCGATTTGA+AGG | + | chr1_2:10671922-10671941 | None:intergenic | 25.0% |
| ! | TTGATCTTGGAAATGTTTAA+AGG | - | chr1_2:10672134-10672153 | Msa0055580:three_prime_UTR | 25.0% |
| ! | TGATCTTGGAAATGTTTAAA+GGG | - | chr1_2:10672135-10672154 | Msa0055580:three_prime_UTR | 25.0% |
| ! | AAGTTCTTGATATGATTTCA+TGG | - | chr1_2:10672225-10672244 | Msa0055580:three_prime_UTR | 25.0% |
| ! | AAAAATCAATAGCTAAAGCA+TGG | + | chr1_2:10672306-10672325 | None:intergenic | 25.0% |
| !! | TTTAAGATTATACCTCAAGT+TGG | + | chr1_2:10672885-10672904 | None:intergenic | 25.0% |
| ! | AATAAGAAGTTATCATCTTG+TGG | - | chr1_2:10673351-10673370 | Msa0055580:intron | 25.0% |
| !!! | ACATGTTCAGTTTTTGTTTT+AGG | - | chr1_2:10673594-10673613 | Msa0055580:CDS | 25.0% |
| !! | CTGATTTGAATCTAGTATAT+AGG | - | chr1_2:10673646-10673665 | Msa0055580:CDS | 25.0% |
| ! | TACTCTCATAATCATGTTAA+TGG | - | chr1_2:10673865-10673884 | Msa0055580:exon | 25.0% |
| !! | AATTGATTTCCAAATGTGAA+TGG | - | chr1_2:10674099-10674118 | Msa0055580:intron | 25.0% |
| ! | GATATAAATAGTGTAAAACC+AGG | - | chr1_2:10674157-10674176 | Msa0055580:intron | 25.0% |
| ! | ATATTAAGCAAAACAAGACA+CGG | + | chr1_2:10674243-10674262 | None:intergenic | 25.0% |
| !! | TATTTTTCTTCTAACTCGTT+TGG | + | chr1_2:10674363-10674382 | None:intergenic | 25.0% |
| ! | AAAAATACATATCCAAGTGA+AGG | - | chr1_2:10674376-10674395 | Msa0055580:intron | 25.0% |
| !!! | TTCTTTTCAGTTTTGTTTGA+TGG | - | chr1_2:10674507-10674526 | Msa0055580:five_prime_UTR | 25.0% |
| AGATCGCTCTCAAAAAATTA+GGG | - | chr1_2:10671850-10671869 | Msa0055580:three_prime_UTR | 30.0% | |
| GATCTTGGAAATGTTTAAAG+GGG | - | chr1_2:10672136-10672155 | Msa0055580:three_prime_UTR | 30.0% | |
| ATCTTGGAAATGTTTAAAGG+GGG | - | chr1_2:10672137-10672156 | Msa0055580:three_prime_UTR | 30.0% | |
| AAGATTCCAAGGACTATAAT+GGG | - | chr1_2:10672578-10672597 | Msa0055580:intron | 30.0% | |
| ACATCATTTGTGGTATATTG+AGG | + | chr1_2:10672622-10672641 | None:intergenic | 30.0% | |
| ! | TGAAGAGCTTGATATTGATT+TGG | - | chr1_2:10672759-10672778 | Msa0055580:intron | 30.0% |
| TACATTGTAGACATCTACAA+GGG | + | chr1_2:10672824-10672843 | None:intergenic | 30.0% | |
| TTACATTGTAGACATCTACA+AGG | + | chr1_2:10672825-10672844 | None:intergenic | 30.0% | |
| ATTACAGTCACTTAACTGAT+TGG | + | chr1_2:10672965-10672984 | None:intergenic | 30.0% | |
| GACTGTAATTGTAACTATCA+AGG | - | chr1_2:10672976-10672995 | Msa0055580:intron | 30.0% | |
| ! | TTCGATTTGACTGGAAAATT+TGG | - | chr1_2:10673017-10673036 | Msa0055580:intron | 30.0% |
| TTTGACTGGAAAATTTGGTT+AGG | - | chr1_2:10673022-10673041 | Msa0055580:intron | 30.0% | |
| ATAAAAGTCACTGAACTGAT+TGG | + | chr1_2:10673066-10673085 | None:intergenic | 30.0% | |
| ! | TCAGTTCAGTGACTTTTATT+CGG | - | chr1_2:10673067-10673086 | Msa0055580:intron | 30.0% |
| CATAATTTCCAGTCAATTTG+TGG | + | chr1_2:10673224-10673243 | None:intergenic | 30.0% | |
| CACAAATTGACTGGAAATTA+TGG | - | chr1_2:10673222-10673241 | Msa0055580:intron | 30.0% | |
| ATTGACTGGAAATTATGGTT+AGG | - | chr1_2:10673227-10673246 | Msa0055580:intron | 30.0% | |
| TTAGGATGTGTAGTTAAATG+TGG | - | chr1_2:10673245-10673264 | Msa0055580:intron | 30.0% | |
| AAACAAACATACCAGGAAAT+GGG | + | chr1_2:10673481-10673500 | None:intergenic | 30.0% | |
| AAAACAAACATACCAGGAAA+TGG | + | chr1_2:10673482-10673501 | None:intergenic | 30.0% | |
| AGTCTTAAAACAAACATACC+AGG | + | chr1_2:10673488-10673507 | None:intergenic | 30.0% | |
| !!! | GGTATGTTTGTTTTAAGACT+TGG | - | chr1_2:10673488-10673507 | Msa0055580:CDS | 30.0% |
| !!! | TTTAAGACTTGGTGTTTTTC+TGG | - | chr1_2:10673499-10673518 | Msa0055580:CDS | 30.0% |
| !!! | TGTTCAGTTTTTGTTTTAGG+TGG | - | chr1_2:10673597-10673616 | Msa0055580:CDS | 30.0% |
| ! | ACTTCTTTGCTGATTAATGT+TGG | - | chr1_2:10673746-10673765 | Msa0055580:CDS | 30.0% |
| ATCAATTCACCATTCACATT+TGG | + | chr1_2:10674111-10674130 | None:intergenic | 30.0% | |
| !! | ATTGATTTGCTACACACAAT+TGG | - | chr1_2:10674125-10674144 | Msa0055580:intron | 30.0% |
| ! | AACCAGGAAAGTTTTACTTT+AGG | - | chr1_2:10674173-10674192 | Msa0055580:intron | 30.0% |
| !!! | GTGTCTTGTTTTGCTTAATA+TGG | - | chr1_2:10674242-10674261 | Msa0055580:intron | 30.0% |
| ! | ATGTTCTCTTTTTGATGAGT+TGG | - | chr1_2:10674271-10674290 | Msa0055580:intron | 30.0% |
| CAGATCGCTCTCAAAAAATT+AGG | - | chr1_2:10671849-10671868 | Msa0055580:three_prime_UTR | 35.0% | |
| AATCAATAGCTAAAGCATGG+TGG | + | chr1_2:10672303-10672322 | None:intergenic | 35.0% | |
| TTAGGAAGAACAAGACAAGA+AGG | - | chr1_2:10672434-10672453 | Msa0055580:intron | 35.0% | |
| TAGGAAGAACAAGACAAGAA+GGG | - | chr1_2:10672435-10672454 | Msa0055580:intron | 35.0% | |
| ! | TCTAACATTAGTGTCCCTTT+TGG | + | chr1_2:10672545-10672564 | None:intergenic | 35.0% |
| TTATGTGACAGAAGATTCCA+AGG | - | chr1_2:10672567-10672586 | Msa0055580:intron | 35.0% | |
| GAAGATTCCAAGGACTATAA+TGG | - | chr1_2:10672577-10672596 | Msa0055580:intron | 35.0% | |
| TCATTTGTGGTATATTGAGG+AGG | + | chr1_2:10672619-10672638 | None:intergenic | 35.0% | |
| TATCTTAGGATGACATTTCC+TGG | - | chr1_2:10672784-10672803 | Msa0055580:intron | 35.0% | |
| GATGTCTACAATGTAAACAG+TGG | - | chr1_2:10672829-10672848 | Msa0055580:intron | 35.0% | |
| ! | ATCATATGCTTCGATTTGAC+TGG | - | chr1_2:10673008-10673027 | Msa0055580:intron | 35.0% |
| CTGGAAAATTTGGTTAGGTT+AGG | - | chr1_2:10673027-10673046 | Msa0055580:intron | 35.0% | |
| ! | CAGTTCAGTGACTTTTATTC+GGG | - | chr1_2:10673068-10673087 | Msa0055580:intron | 35.0% |
| TGACTAGACTCTCATACATA+TGG | + | chr1_2:10673145-10673164 | None:intergenic | 35.0% | |
| ATCATATGCCACAAATTGAC+TGG | - | chr1_2:10673213-10673232 | Msa0055580:intron | 35.0% | |
| ! | GAAAAGAGTATACACAGGAA+GGG | + | chr1_2:10673295-10673314 | None:intergenic | 35.0% |
| TGTCATCTGAAGATAGTCTT+CGG | + | chr1_2:10673323-10673342 | None:intergenic | 35.0% | |
| AGACTATCTTCAGATGACAT+TGG | - | chr1_2:10673324-10673343 | Msa0055580:intron | 35.0% | |
| ! | AACCACAAAGCATTACACAT+GGG | + | chr1_2:10673545-10673564 | None:intergenic | 35.0% |
| !!! | CAGTTTTTGTTTTAGGTGGA+AGG | - | chr1_2:10673601-10673620 | Msa0055580:CDS | 35.0% |
| TTTGCGTAGAGAGAAAACTT+TGG | - | chr1_2:10673837-10673856 | Msa0055580:CDS | 35.0% | |
| AAACAAAAGAATGCAACAGC+TGG | - | chr1_2:10674049-10674068 | Msa0055580:intron | 35.0% | |
| !! | TTGCTACACACAATTGGTTT+TGG | - | chr1_2:10674131-10674150 | Msa0055580:intron | 35.0% |
| !!! | TACACACAATTGGTTTTGGT+TGG | - | chr1_2:10674135-10674154 | Msa0055580:intron | 35.0% |
| CACCTAAAGTAAAACTTTCC+TGG | + | chr1_2:10674178-10674197 | None:intergenic | 35.0% | |
| AATACATATCCAAGTGAAGG+TGG | - | chr1_2:10674379-10674398 | Msa0055580:intron | 35.0% | |
| TTTCTCTATCTGCTTCGCTT+TGG | - | chr1_2:10671883-10671902 | Msa0055580:three_prime_UTR | 40.0% | |
| GGATTCAAAGAAGACTTTCG+CGG | + | chr1_2:10672496-10672515 | None:intergenic | 40.0% | |
| TACAGTCCCATTATAGTCCT+TGG | + | chr1_2:10672587-10672606 | None:intergenic | 40.0% | |
| ! | AGGACTATAATGGGACTGTA+TGG | - | chr1_2:10672587-10672606 | Msa0055580:intron | 40.0% |
| GACAAGTTGCACATCATTTG+TGG | + | chr1_2:10672632-10672651 | None:intergenic | 40.0% | |
| GCTGACAGAGAATCAGTATA+TGG | - | chr1_2:10672735-10672754 | Msa0055580:intron | 40.0% | |
| CAATGTAAACAGTGGTGACT+TGG | - | chr1_2:10672837-10672856 | Msa0055580:intron | 40.0% | |
| TGAGAGTCTAGTCAACCATT+CGG | - | chr1_2:10673151-10673170 | Msa0055580:intron | 40.0% | |
| ! | GGAAAAGAGTATACACAGGA+AGG | + | chr1_2:10673296-10673315 | None:intergenic | 40.0% |
| ! | GAACGGAAAAGAGTATACAC+AGG | + | chr1_2:10673300-10673319 | None:intergenic | 40.0% |
| GTCATCTGAAGATAGTCTTC+GGG | + | chr1_2:10673322-10673341 | None:intergenic | 40.0% | |
| TTGTGGTTGTTGAATCTCAC+AGG | - | chr1_2:10673368-10673387 | Msa0055580:intron | 40.0% | |
| TGTGGTTGTTGAATCTCACA+GGG | - | chr1_2:10673369-10673388 | Msa0055580:intron | 40.0% | |
| ! | TTTTGTGCATTCCCATTTCC+TGG | - | chr1_2:10673467-10673486 | Msa0055580:CDS | 40.0% |
| TTCCCATGTGTAATGCTTTG+TGG | - | chr1_2:10673540-10673559 | Msa0055580:CDS | 40.0% | |
| ! | GAACCACAAAGCATTACACA+TGG | + | chr1_2:10673546-10673565 | None:intergenic | 40.0% |
| TTTGATGAAGCAGAATCAGC+TGG | + | chr1_2:10674031-10674050 | None:intergenic | 40.0% | |
| CAAGTGATGAGATGAAGTAC+TGG | + | chr1_2:10674077-10674096 | None:intergenic | 40.0% | |
| AAGGCCAGTGAAAACAAAGT+TGG | - | chr1_2:10674337-10674356 | Msa0055580:intron | 40.0% | |
| !!! | TTGGCCAACTTTGTTTTCAC+TGG | + | chr1_2:10674344-10674363 | None:intergenic | 40.0% |
| TTACTGCCTGAATTGTACCT+TGG | - | chr1_2:10674431-10674450 | Msa0055580:intron | 40.0% | |
| !!! | TGATGGTGTTTTGATGCTGA+TGG | - | chr1_2:10674524-10674543 | Msa0055580:five_prime_UTR | 40.0% |
| TTGAGAGCGATCTGATCGAA+AGG | + | chr1_2:10671843-10671862 | None:intergenic | 45.0% | |
| GTACGTTCCTATGGCCAAAA+GGG | - | chr1_2:10672528-10672547 | Msa0055580:intron | 45.0% | |
| ! | TTAGTGTCCCTTTTGGCCAT+AGG | + | chr1_2:10672538-10672557 | None:intergenic | 45.0% |
| TTGTCGAGAAGAACGCTCAA+AGG | - | chr1_2:10672647-10672666 | Msa0055580:intron | 45.0% | |
| GAAAAGTAAGAGCTCGAAGC+AGG | + | chr1_2:10672694-10672713 | None:intergenic | 45.0% | |
| ! | CTTTTCATCACCACAGAGTG+TGG | - | chr1_2:10672708-10672727 | Msa0055580:intron | 45.0% |
| AGGGACTCATCAGATATACC+AGG | + | chr1_2:10672805-10672824 | None:intergenic | 45.0% | |
| TGAGATGCTAAGCCAACTTG+AGG | - | chr1_2:10672870-10672889 | Msa0055580:intron | 45.0% | |
| GAGAGTCTAGTCAACCATTC+GGG | - | chr1_2:10673152-10673171 | Msa0055580:intron | 45.0% | |
| CTGAAGATAGTCTTCGGGAA+CGG | + | chr1_2:10673317-10673336 | None:intergenic | 45.0% | |
| TTGGTCGTTCATTCAGTTGC+TGG | - | chr1_2:10673765-10673784 | Msa0055580:CDS | 45.0% | |
| AAGGGAAAACCACCTTCACT+TGG | + | chr1_2:10674391-10674410 | None:intergenic | 45.0% | |
| ! | AAGTGAAGGTGGTTTTCCCT+TGG | - | chr1_2:10674390-10674409 | Msa0055580:intron | 45.0% |
| ! | AGTGAAGGTGGTTTTCCCTT+GGG | - | chr1_2:10674391-10674410 | Msa0055580:intron | 45.0% |
| ! | GGTTTTCCCTTGGGATAGAT+AGG | - | chr1_2:10674400-10674419 | Msa0055580:intron | 45.0% |
| TTTCCCTTGGGATAGATAGG+TGG | - | chr1_2:10674403-10674422 | Msa0055580:intron | 45.0% | |
| AAGCCACCTATCTATCCCAA+GGG | + | chr1_2:10674409-10674428 | None:intergenic | 45.0% | |
| TGCTCACCAAGGTACAATTC+AGG | + | chr1_2:10674440-10674459 | None:intergenic | 45.0% | |
| TGTACCTTGGTGAGCAACTT+TGG | - | chr1_2:10674444-10674463 | Msa0055580:intron | 45.0% | |
| GTACCTTGGTGAGCAACTTT+GGG | - | chr1_2:10674445-10674464 | Msa0055580:intron | 45.0% | |
| TACCTTGGTGAGCAACTTTG+GGG | - | chr1_2:10674446-10674465 | Msa0055580:intron | 45.0% | |
| CGTACGTTCCTATGGCCAAA+AGG | - | chr1_2:10672527-10672546 | Msa0055580:intron | 50.0% | |
| TGTTGAATCTCACAGGGTGC+TGG | - | chr1_2:10673375-10673394 | Msa0055580:intron | 50.0% | |
| GATGATGCTGTTGACGCTCA+TGG | - | chr1_2:10673956-10673975 | Msa0055580:intron | 50.0% | |
| CTTCCAGAGTCGCTGGATAT+TGG | - | chr1_2:10673983-10674002 | Msa0055580:intron | 50.0% | |
| TCACCAATATCCAGCGACTC+TGG | + | chr1_2:10673989-10674008 | None:intergenic | 50.0% | |
| GCAGAATCAGCTGGCATAAC+AGG | + | chr1_2:10674022-10674041 | None:intergenic | 50.0% | |
| AGCAAAACAAGACACGGCTG+AGG | + | chr1_2:10674237-10674256 | None:intergenic | 50.0% | |
| CAAGCCACCTATCTATCCCA+AGG | + | chr1_2:10674410-10674429 | None:intergenic | 50.0% | |
| AACCCCAAAGTTGCTCACCA+AGG | + | chr1_2:10674451-10674470 | None:intergenic | 50.0% | |
| GGAACGTACGCAGCTGCATA+TGG | + | chr1_2:10672517-10672536 | None:intergenic | 55.0% | |
| TGCAGCTGCGTACGTTCCTA+TGG | - | chr1_2:10672519-10672538 | Msa0055580:intron | 55.0% | |
| GAACGCTCAAAGGCTCTCTC+CGG | - | chr1_2:10672657-10672676 | Msa0055580:intron | 55.0% | |
| AACGCTCAAAGGCTCTCTCC+GGG | - | chr1_2:10672658-10672677 | Msa0055580:intron | 55.0% | |
| !!! | GAAGCAGGCTGGTTTTTCCC+CGG | + | chr1_2:10672679-10672698 | None:intergenic | 55.0% |
| AGTAAGAGCTCGAAGCAGGC+TGG | + | chr1_2:10672690-10672709 | None:intergenic | 55.0% | |
| !! | AATCTCACAGGGTGCTGGCT+AGG | - | chr1_2:10673380-10673399 | Msa0055580:intron | 55.0% |
| TGGAAGTCTTCCAGAGTCGC+TGG | - | chr1_2:10673976-10673995 | Msa0055580:intron | 55.0% | |
| ACGCTCAAAGGCTCTCTCCG+GGG | - | chr1_2:10672659-10672678 | Msa0055580:intron | 60.0% | |
| GTCAGCTGTGCCACACTCTG+TGG | + | chr1_2:10672721-10672740 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 10671800 | 10674553 | 10671800 | ID=Msa0055580;Name=Msa0055580 |
| chr1_2 | mRNA | 10671800 | 10674553 | 10671800 | ID=Msa0055580-mRNA-1;Parent=Msa0055580;Name=Msa0055580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|0.5|0.33|3|454|184 |
| chr1_2 | exon | 10671800 | 10672400 | 10671800 | ID=Msa0055580-mRNA-1:exon:4052;Parent=Msa0055580-mRNA-1 |
| chr1_2 | exon | 10673462 | 10673915 | 10673462 | ID=Msa0055580-mRNA-1:exon:4051;Parent=Msa0055580-mRNA-1 |
| chr1_2 | exon | 10674449 | 10674553 | 10674449 | ID=Msa0055580-mRNA-1:exon:4050;Parent=Msa0055580-mRNA-1 |
| chr1_2 | five_prime_UTR | 10674449 | 10674553 | 10674449 | ID=Msa0055580-mRNA-1:five_prime_utr;Parent=Msa0055580-mRNA-1 |
| chr1_2 | five_prime_UTR | 10673870 | 10673915 | 10673870 | ID=Msa0055580-mRNA-1:five_prime_utr;Parent=Msa0055580-mRNA-1 |
| chr1_2 | CDS | 10673462 | 10673869 | 10673462 | ID=Msa0055580-mRNA-1:cds;Parent=Msa0055580-mRNA-1 |
| chr1_2 | CDS | 10672254 | 10672400 | 10672254 | ID=Msa0055580-mRNA-1:cds;Parent=Msa0055580-mRNA-1 |
| chr1_2 | three_prime_UTR | 10671800 | 10672253 | 10671800 | ID=Msa0055580-mRNA-1:three_prime_utr;Parent=Msa0055580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
