Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007500 | XP_013465755.1 | 95.518 | 357 | 13 | 3 | 1 | 356 | 1 | 355 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007500 | sp|Q6MEG4|RSMH_PARUW | 44.318 | 264 | 132 | 4 | 77 | 340 | 6 | 254 | 1.26e-68 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007500 | A0A072VDX8 | 95.518 | 357 | 13 | 3 | 1 | 356 | 1 | 355 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007460 | Msa0007500 | 0.899086 | 2.807108e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007500 | MtrunA17_Chr1g0148351 | 95.518 | 357 | 13 | 3 | 1 | 356 | 1 | 355 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007500 | AT5G10910.1 | 63.259 | 313 | 104 | 5 | 46 | 356 | 66 | 369 | 1.40e-127 | 373 |
Find 112 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATGTCTTCTGCTTTA+AGG | 0.094672 | 1_1:+10759105 | None:intergenic |
| ACATTTCTTAATATAATTAA+AGG | 0.204441 | 1_1:-10757858 | Msa0007500:CDS |
| CAGAAGACATATTAAATTCT+TGG | 0.206992 | 1_1:-10759097 | Msa0007500:CDS |
| TTTCTTGGTCTTTGTGATTC+TGG | 0.209292 | 1_1:+10761188 | None:intergenic |
| TATCTTTGCTTTAGAAATTA+TGG | 0.213735 | 1_1:-10757561 | Msa0007500:three_prime_UTR |
| GAACAAACAAGTACACAAAA+TGG | 0.249164 | 1_1:-10761319 | Msa0007500:exon |
| GGCCGTATCCTAAGGGATTA+TGG | 0.262340 | 1_1:-10759059 | Msa0007500:CDS |
| ATCCCGCATCAGTTCAGTTT+TGG | 0.280708 | 1_1:-10760005 | Msa0007500:CDS |
| AGGATGTGGTGAATGAGTTT+AGG | 0.329203 | 1_1:+10761255 | None:intergenic |
| TCTTTCGTTGATTGTACTCT+TGG | 0.335075 | 1_1:-10761009 | Msa0007500:CDS |
| GCACTCCACTACTGACTTGC+TGG | 0.347460 | 1_1:-10758973 | Msa0007500:CDS |
| TTCCTTGGCAAGTGCTGCTT+CGG | 0.352948 | 1_1:+10761164 | None:intergenic |
| CTCATTCAGCGTGTGACTCC+TGG | 0.359723 | 1_1:-10758948 | Msa0007500:CDS |
| AGAGTTGCAATAGTGATCTT+AGG | 0.361703 | 1_1:-10757813 | Msa0007500:CDS |
| GTTACTACCACAGTGAGTTT+AGG | 0.366864 | 1_1:-10761346 | Msa0007500:five_prime_UTR |
| CACATCAAATCTGTGCTTAG+AGG | 0.369280 | 1_1:-10759932 | Msa0007500:CDS |
| TGTCATATCCTTTCACAGTT+TGG | 0.376437 | 1_1:-10757901 | Msa0007500:CDS |
| GATGACCTACCTTTCATTCC+AGG | 0.384669 | 1_1:+10758930 | None:intergenic |
| TGTTATGCTTTCTGAAGTAT+TGG | 0.385927 | 1_1:-10761058 | Msa0007500:CDS |
| ATACGGCCCACTTCAGTATC+TGG | 0.387830 | 1_1:+10759074 | None:intergenic |
| AATACTTCAGAAAGCATAAC+AGG | 0.389337 | 1_1:+10761060 | None:intergenic |
| GTCTATTGATGGCATCTTGA+TGG | 0.389523 | 1_1:-10759882 | Msa0007500:CDS |
| ATTATGGGGAAGAGACTAAT+TGG | 0.397445 | 1_1:-10759043 | Msa0007500:CDS |
| CAAGTAATGCCTGGATCAAA+TGG | 0.400903 | 1_1:-10757748 | Msa0007500:three_prime_UTR |
| GAAGTAGAAGTGCAAAGCTC+AGG | 0.404929 | 1_1:-10757666 | Msa0007500:three_prime_UTR |
| TCTTCTTCTGACGGAGTAAT+CGG | 0.411260 | 1_1:+10757706 | None:intergenic |
| GAAAGAAGATAAGGAACAAT+TGG | 0.414138 | 1_1:+10761026 | None:intergenic |
| GTGGTGAATGAGTTTAGGTT+TGG | 0.421810 | 1_1:+10761260 | None:intergenic |
| TGAAAGTGTTTACTGTGTTA+AGG | 0.437606 | 1_1:-10759964 | Msa0007500:CDS |
| AACGGGCGAGGAGCACTTAG+AGG | 0.438530 | 1_1:-10759909 | Msa0007500:CDS |
| TTAGAGGATCCGTCTATTGA+TGG | 0.440253 | 1_1:-10759893 | Msa0007500:CDS |
| GATTGTACTCTTGGTGCTGC+TGG | 0.441916 | 1_1:-10761000 | Msa0007500:CDS |
| AAATCTGTGCTTAGAGGAAC+GGG | 0.443278 | 1_1:-10759926 | Msa0007500:CDS |
| GCCGTATCCTAAGGGATTAT+GGG | 0.446424 | 1_1:-10759058 | Msa0007500:CDS |
| AAGAAGGAGAAGAGAGGATG+TGG | 0.451279 | 1_1:+10761241 | None:intergenic |
| TACCACAGTGAGTTTAGGTC+TGG | 0.451776 | 1_1:-10761341 | Msa0007500:five_prime_UTR |
| AGATTCATAAGAATGCTGTT+TGG | 0.456202 | 1_1:-10757625 | Msa0007500:three_prime_UTR |
| TGAATGAAATAGGTGATTAG+AGG | 0.456382 | 1_1:-10760091 | Msa0007500:intron |
| TGATGGCATCTTGATGGACC+TGG | 0.458496 | 1_1:-10759876 | Msa0007500:CDS |
| TCTCTTCCCCATAATCCCTT+AGG | 0.464888 | 1_1:+10759051 | None:intergenic |
| TCATAAATATATACAACATA+AGG | 0.466028 | 1_1:-10757417 | Msa0007500:intron |
| ATTGTCCAAGCTCGTTTAGA+AGG | 0.469453 | 1_1:-10759002 | Msa0007500:CDS |
| ACACTGTAACAGGGGAAGAC+AGG | 0.470655 | 1_1:-10758048 | Msa0007500:intron |
| CTGAAGTGGGCCGTATCCTA+AGG | 0.471585 | 1_1:-10759067 | Msa0007500:CDS |
| CCAACAAAATACTTCAGCTC+TGG | 0.471925 | 1_1:+10760064 | None:intergenic |
| CATATCCTTTCACAGTTTGG+AGG | 0.473506 | 1_1:-10757898 | Msa0007500:CDS |
| GAGGATCCATGCGCATATCA+AGG | 0.478591 | 1_1:+10759603 | None:intergenic |
| AACAAACAAGTACACAAAAT+GGG | 0.481063 | 1_1:-10761318 | Msa0007500:exon |
| TGATATGCGCATGGATCCTC+AGG | 0.481378 | 1_1:-10759600 | Msa0007500:intron |
| AGAATAATTCCATTTGATCC+AGG | 0.483518 | 1_1:+10757739 | None:intergenic |
| CCTGGGCATGTCATCTATGC+AGG | 0.484557 | 1_1:-10759858 | Msa0007500:intron |
| AAGTTCTCCTCTTCTTCTGA+CGG | 0.491538 | 1_1:+10757697 | None:intergenic |
| GGGATGGATGTGGACCCTGT+GGG | 0.491622 | 1_1:-10760043 | Msa0007500:CDS |
| GAAATGAAGACATGGGAGAA+GGG | 0.498882 | 1_1:-10757836 | Msa0007500:CDS |
| CCCCATAATCCCTTAGGATA+CGG | 0.499959 | 1_1:+10759057 | None:intergenic |
| GGAAATGAAGACATGGGAGA+AGG | 0.500045 | 1_1:-10757837 | Msa0007500:CDS |
| ACTGTCTTGCATCTGGTGGA+AGG | 0.500980 | 1_1:-10757929 | Msa0007500:CDS |
| CAAAGAGGATTCAGTGTGCT+TGG | 0.501712 | 1_1:-10759635 | Msa0007500:CDS |
| ATCCACCTTCTAAACGAGCT+TGG | 0.511048 | 1_1:+10758997 | None:intergenic |
| TTTGACTGTCTTGCATCTGG+TGG | 0.515837 | 1_1:-10757933 | Msa0007500:CDS |
| AGGGTTCTGAGATTTGAAGA+AGG | 0.517857 | 1_1:+10761225 | None:intergenic |
| TTCTCAATGCTTGAAATACC+CGG | 0.521739 | 1_1:+10758006 | None:intergenic |
| AGCACACTGAATCCTCTTTG+AGG | 0.522390 | 1_1:+10759638 | None:intergenic |
| TCTGTCCTCCAAACTGTGAA+AGG | 0.522906 | 1_1:+10757893 | None:intergenic |
| TGGGATGGATGTGGACCCTG+TGG | 0.531423 | 1_1:-10760044 | Msa0007500:CDS |
| ACAATCAACGAAAGAAGATA+AGG | 0.534604 | 1_1:+10761017 | None:intergenic |
| TGGATAAGACAAGTAATGCC+TGG | 0.535917 | 1_1:-10757757 | Msa0007500:three_prime_UTR |
| TCTGGAAGAAGCGGTGGTGA+GGG | 0.537069 | 1_1:+10761206 | None:intergenic |
| ATGATAGAAACTAACATTGG+TGG | 0.548892 | 1_1:+10760972 | None:intergenic |
| GGATTCAGTGTGCTTGGTGA+TGG | 0.548903 | 1_1:-10759629 | Msa0007500:CDS |
| TTCTGGAAGAAGCGGTGGTG+AGG | 0.550767 | 1_1:+10761205 | None:intergenic |
| CACTGTAACAGGGGAAGACA+GGG | 0.551267 | 1_1:-10758047 | Msa0007500:intron |
| GATTACTCCGTCAGAAGAAG+AGG | 0.555773 | 1_1:-10757704 | Msa0007500:three_prime_UTR |
| CAAATCTGTGCTTAGAGGAA+CGG | 0.556750 | 1_1:-10759927 | Msa0007500:CDS |
| TGAGCCGTGTCACTCCCCAC+AGG | 0.557923 | 1_1:+10760028 | None:intergenic |
| CGTGTGACTCCTGGAATGAA+AGG | 0.560335 | 1_1:-10758939 | Msa0007500:CDS |
| TTATGGTCCCAATGTTTCAT+CGG | 0.563048 | 1_1:-10757544 | Msa0007500:three_prime_UTR |
| GTCCAAAACTGAACTGATGC+GGG | 0.565422 | 1_1:+10760003 | None:intergenic |
| AACCGAAGCAGCACTTGCCA+AGG | 0.567853 | 1_1:-10761166 | Msa0007500:CDS |
| AGGATCCATGCGCATATCAA+GGG | 0.568453 | 1_1:+10759604 | None:intergenic |
| GGATGGATGTGGACCCTGTG+GGG | 0.572979 | 1_1:-10760042 | Msa0007500:CDS |
| CACAGTAAACACTTTCACAC+TGG | 0.573467 | 1_1:+10759970 | None:intergenic |
| GAGATCCAGCAAGTCAGTAG+TGG | 0.573978 | 1_1:+10758968 | None:intergenic |
| GTCCAAGCTCGTTTAGAAGG+TGG | 0.576782 | 1_1:-10758999 | Msa0007500:CDS |
| ATTAAAGGAAATGAAGACAT+GGG | 0.581318 | 1_1:-10757843 | Msa0007500:CDS |
| TGATGAACTGAAGACTCTTG+AGG | 0.586961 | 1_1:-10757973 | Msa0007500:CDS |
| AAGTAGAAGTGCAAAGCTCA+GGG | 0.588150 | 1_1:-10757665 | Msa0007500:three_prime_UTR |
| TGGTCCCAATGTTTCATCGG+TGG | 0.589834 | 1_1:-10757541 | Msa0007500:three_prime_UTR |
| ATCAAGATGCCATCAATAGA+CGG | 0.591644 | 1_1:+10759884 | None:intergenic |
| AATTAAAGGAAATGAAGACA+TGG | 0.596968 | 1_1:-10757844 | Msa0007500:CDS |
| CGTCCAAAACTGAACTGATG+CGG | 0.599707 | 1_1:+10760002 | None:intergenic |
| CCTGCATAGATGACATGCCC+AGG | 0.608670 | 1_1:+10759858 | None:intergenic |
| TAGGTGGATGATCCTCAAAG+AGG | 0.608837 | 1_1:-10759650 | Msa0007500:CDS |
| TGAAGTGGGCCGTATCCTAA+GGG | 0.612320 | 1_1:-10759066 | Msa0007500:CDS |
| TGTGCTTAGAGGAACGGGCG+AGG | 0.612987 | 1_1:-10759921 | Msa0007500:CDS |
| TGACTCCTGGAATGAAAGGT+AGG | 0.614312 | 1_1:-10758935 | Msa0007500:intron |
| GATTTGAAGAAGGAGAAGAG+AGG | 0.619729 | 1_1:+10761235 | None:intergenic |
| GCTTTGCACTTCTACTTCTG+CGG | 0.620414 | 1_1:+10757671 | None:intergenic |
| GTAACAGGGGAAGACAGGGT+TGG | 0.623266 | 1_1:-10758043 | Msa0007500:intron |
| CTTTGTGATTCTGGAAGAAG+CGG | 0.636349 | 1_1:+10761197 | None:intergenic |
| TCTCAATGCTTGAAATACCC+GGG | 0.637844 | 1_1:+10758007 | None:intergenic |
| GAGCCGTGTCACTCCCCACA+GGG | 0.640379 | 1_1:+10760029 | None:intergenic |
| GATGGCATCTTGATGGACCT+GGG | 0.642501 | 1_1:-10759875 | Msa0007500:CDS |
| TTCTTGGCCAGATACTGAAG+TGG | 0.644803 | 1_1:-10759081 | Msa0007500:CDS |
| TGGACCCCTTGATATGCGCA+TGG | 0.647959 | 1_1:-10759609 | Msa0007500:CDS |
| GGACCCTGTGGGGAGTGACA+CGG | 0.650344 | 1_1:-10760032 | Msa0007500:CDS |
| CCGTATCCTAAGGGATTATG+GGG | 0.656929 | 1_1:-10759057 | Msa0007500:CDS |
| TGTGATTCTGGAAGAAGCGG+TGG | 0.659825 | 1_1:+10761200 | None:intergenic |
| TCTTGGCCAGATACTGAAGT+GGG | 0.661677 | 1_1:-10759080 | Msa0007500:CDS |
| TTCTGACAAAGAACTCGACA+AGG | 0.672176 | 1_1:-10761127 | Msa0007500:CDS |
| GGATCCATGCGCATATCAAG+GGG | 0.677700 | 1_1:+10759605 | None:intergenic |
| TTCCAGACCTAAACTCACTG+TGG | 0.693459 | 1_1:+10761339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAGTATATATTTTTTTA+TGG | + | chr1_1:10758434-10758453 | None:intergenic | 10.0% |
| !!! | ATTTTTTCAAATTCATAATA+TGG | - | chr1_1:10759927-10759946 | Msa0007500:CDS | 10.0% |
| !!! | TTTTTTCAAATTCATAATAT+GGG | - | chr1_1:10759928-10759947 | Msa0007500:CDS | 10.0% |
| !! | ACATTTCTTAATATAATTAA+AGG | - | chr1_1:10760889-10760908 | Msa0007500:intron | 10.0% |
| !!! | TTTTTCAAATTCATAATATG+GGG | - | chr1_1:10759929-10759948 | Msa0007500:CDS | 15.0% |
| !!! | TTTGTAATAAAATTTGTTCT+TGG | + | chr1_1:10760070-10760089 | None:intergenic | 15.0% |
| !!! | AACAAATTTTATTACAAAGA+TGG | - | chr1_1:10760072-10760091 | Msa0007500:CDS | 15.0% |
| !! | AAGTATAAAATATATATGCA+GGG | - | chr1_1:10760407-10760426 | Msa0007500:intron | 15.0% |
| !! | TCATAAATATATACAACATA+AGG | - | chr1_1:10761330-10761349 | Msa0007500:five_prime_UTR | 15.0% |
| !! | TTTATGATAGAAACTAACAT+TGG | + | chr1_1:10757781-10757800 | None:intergenic | 20.0% |
| !! | AAATATTATTTAGCCAAAGA+TGG | - | chr1_1:10758197-10758216 | Msa0007500:intron | 20.0% |
| !!! | GAACATTTTTACATAGTATT+TGG | + | chr1_1:10758552-10758571 | None:intergenic | 20.0% |
| !! | ATTGAATGATTGAATGAAAT+AGG | - | chr1_1:10758646-10758665 | Msa0007500:intron | 20.0% |
| !! | AATGTATCATATATAAAGCA+CGG | + | chr1_1:10758922-10758941 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAAAACATATA+AGG | + | chr1_1:10759081-10759100 | None:intergenic | 20.0% |
| !!! | CCTTATATGTTTTTTGTTTT+AGG | - | chr1_1:10759078-10759097 | Msa0007500:CDS | 20.0% |
| !!! | TATATGTTTTTTGTTTTAGG+TGG | - | chr1_1:10759081-10759100 | Msa0007500:CDS | 20.0% |
| !!! | ATTTCTATAATACAGTTTTG+TGG | - | chr1_1:10759395-10759414 | Msa0007500:intron | 20.0% |
| !! | TTTGTAAAGTAAACAATCAA+AGG | + | chr1_1:10760333-10760352 | None:intergenic | 20.0% |
| !! | GAAGTATAAAATATATATGC+AGG | - | chr1_1:10760406-10760425 | Msa0007500:intron | 20.0% |
| !!! | TATCTTTGCTTTAGAAATTA+TGG | - | chr1_1:10761186-10761205 | Msa0007500:CDS | 20.0% |
| ! | AACAAACAAGTACACAAAAT+GGG | - | chr1_1:10757429-10757448 | Msa0007500:intron | 25.0% |
| !! | TTCTTCTTATTTGTGTATTG+TGG | - | chr1_1:10757816-10757835 | Msa0007500:CDS | 25.0% |
| !! | CTATTTTCACAAATTCTCTT+AGG | + | chr1_1:10757946-10757965 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | - | chr1_1:10758013-10758032 | Msa0007500:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_1:10758126-10758145 | Msa0007500:intron | 25.0% |
| ! | ATGTACTTTGTATAATCAAG+TGG | - | chr1_1:10758268-10758287 | Msa0007500:intron | 25.0% |
| ! | GGTTAACATGAAAAGTTATA+AGG | + | chr1_1:10758461-10758480 | None:intergenic | 25.0% |
| !! | TTACTGTGTTAAGGAATTTT+AGG | - | chr1_1:10758792-10758811 | Msa0007500:intron | 25.0% |
| ! | CATAAGATTAGACAAAATCA+TGG | + | chr1_1:10758987-10759006 | None:intergenic | 25.0% |
| !! | CATGATTTTGTCTAATCTTA+TGG | - | chr1_1:10758985-10759004 | Msa0007500:CDS | 25.0% |
| ! | CAATGAAAATTTATGCTCTT+TGG | - | chr1_1:10759194-10759213 | Msa0007500:intron | 25.0% |
| ! | TGTTAATGTTGTAGCATTTA+TGG | - | chr1_1:10759306-10759325 | Msa0007500:intron | 25.0% |
| !!! | GTCTCTTTTCTTAATTTGAA+TGG | - | chr1_1:10759343-10759362 | Msa0007500:intron | 25.0% |
| ! | ATGAGGTGAAAAAAGAAAAT+AGG | + | chr1_1:10759487-10759506 | None:intergenic | 25.0% |
| ! | TTAAGTAAATAAGTTACGTG+TGG | - | chr1_1:10759533-10759552 | Msa0007500:intron | 25.0% |
| ! | TTTCTTTCCTATTAAACTGA+TGG | - | chr1_1:10759599-10759618 | Msa0007500:intron | 25.0% |
| ! | TTAATATGTCTTCTGCTTTA+AGG | + | chr1_1:10759645-10759664 | None:intergenic | 25.0% |
| ! | CAGAAGACATATTAAATTCT+TGG | - | chr1_1:10759650-10759669 | Msa0007500:CDS | 25.0% |
| ! | ATTTCAATATGCATGAGAAA+TGG | + | chr1_1:10759892-10759911 | None:intergenic | 25.0% |
| ! | ACATTTCTCAAATTCAAACA+TGG | + | chr1_1:10760365-10760384 | None:intergenic | 25.0% |
| ! | AATTTGAGAAATGTAGTAGT+TGG | - | chr1_1:10760371-10760390 | Msa0007500:intron | 25.0% |
| ! | TAAAATATATATGCAGGGTA+AGG | - | chr1_1:10760412-10760431 | Msa0007500:intron | 25.0% |
| ! | ACTTTCCATGAAAAACATTA+TGG | + | chr1_1:10760644-10760663 | None:intergenic | 25.0% |
| !!! | AATTTTGATTACACTGTAAC+AGG | - | chr1_1:10760689-10760708 | Msa0007500:intron | 25.0% |
| !!! | ATTTTGATTACACTGTAACA+GGG | - | chr1_1:10760690-10760709 | Msa0007500:intron | 25.0% |
| ! | AATTAAAGGAAATGAAGACA+TGG | - | chr1_1:10760903-10760922 | Msa0007500:intron | 25.0% |
| ! | ATTAAAGGAAATGAAGACAT+GGG | - | chr1_1:10760904-10760923 | Msa0007500:intron | 25.0% |
| ! | AAATCAAAGAAAAAGAAGCA+TGG | - | chr1_1:10760970-10760989 | Msa0007500:intron | 25.0% |
| GAACAAACAAGTACACAAAA+TGG | - | chr1_1:10757428-10757447 | Msa0007500:intron | 30.0% | |
| ! | AATACTTCAGAAAGCATAAC+AGG | + | chr1_1:10757690-10757709 | None:intergenic | 30.0% |
| !! | TGTTATGCTTTCTGAAGTAT+TGG | - | chr1_1:10757689-10757708 | Msa0007500:three_prime_UTR | 30.0% |
| GAAAGAAGATAAGGAACAAT+TGG | + | chr1_1:10757724-10757743 | None:intergenic | 30.0% | |
| ACAATCAACGAAAGAAGATA+AGG | + | chr1_1:10757733-10757752 | None:intergenic | 30.0% | |
| ATGATAGAAACTAACATTGG+TGG | + | chr1_1:10757778-10757797 | None:intergenic | 30.0% | |
| TAATCAGATTTCACCATCTT+TGG | + | chr1_1:10758213-10758232 | None:intergenic | 30.0% | |
| GTGTGATTCAAATTCTTGAA+AGG | + | chr1_1:10758482-10758501 | None:intergenic | 30.0% | |
| TGAATGAAATAGGTGATTAG+AGG | - | chr1_1:10758656-10758675 | Msa0007500:intron | 30.0% | |
| !! | TGAAAGTGTTTACTGTGTTA+AGG | - | chr1_1:10758783-10758802 | Msa0007500:intron | 30.0% |
| !!! | GATACATTGACTTGTTTTCT+TGG | - | chr1_1:10758934-10758953 | Msa0007500:intron | 30.0% |
| ! | CAATTTTCTGATCGATTACT+AGG | - | chr1_1:10759263-10759282 | Msa0007500:intron | 30.0% |
| ! | TTACTAGGAGTAAAAAGTGT+TGG | - | chr1_1:10759278-10759297 | Msa0007500:intron | 30.0% |
| CGCTCAAAAATATTACAATG+AGG | + | chr1_1:10759504-10759523 | None:intergenic | 30.0% | |
| ATAGAGCTGCAATAAAAAAC+TGG | + | chr1_1:10759848-10759867 | None:intergenic | 30.0% | |
| ! | TTGCAGCTCTATTATTTTCT+AGG | - | chr1_1:10759856-10759875 | Msa0007500:intron | 30.0% |
| TGGTTAAAACAAGAAACCTT+TGG | - | chr1_1:10760092-10760111 | Msa0007500:intron | 30.0% | |
| TTAAAACAAGAAACCTTTGG+AGG | - | chr1_1:10760095-10760114 | Msa0007500:intron | 30.0% | |
| ! | CAATACGATTGCTTTCTTTT+GGG | - | chr1_1:10760152-10760171 | Msa0007500:intron | 30.0% |
| ATGTTAATAGGTCTCTACAA+GGG | - | chr1_1:10760247-10760266 | Msa0007500:intron | 30.0% | |
| ! | AGGTATATTTCCTTGTTTCA+AGG | + | chr1_1:10760313-10760332 | None:intergenic | 30.0% |
| !! | TTTTGATTACACTGTAACAG+GGG | - | chr1_1:10760691-10760710 | Msa0007500:intron | 30.0% |
| AGAATAATTCCATTTGATCC+AGG | + | chr1_1:10761011-10761030 | None:intergenic | 30.0% | |
| AGATTCATAAGAATGCTGTT+TGG | - | chr1_1:10761122-10761141 | Msa0007500:CDS | 30.0% | |
| !!! | AGAAATGATATTTTGACGTC+AGG | - | chr1_1:10761251-10761270 | Msa0007500:CDS | 30.0% |
| ! | TTTCTTGGTCTTTGTGATTC+TGG | + | chr1_1:10757562-10757581 | None:intergenic | 35.0% |
| ! | TCTTTCGTTGATTGTACTCT+TGG | - | chr1_1:10757738-10757757 | Msa0007500:three_prime_UTR | 35.0% |
| CAAAACAAGCCTAATCCAAA+CGG | - | chr1_1:10757918-10757937 | Msa0007500:CDS | 35.0% | |
| AAAACAAGCCTAATCCAAAC+GGG | - | chr1_1:10757919-10757938 | Msa0007500:CDS | 35.0% | |
| AGTGTGAATGCATAGAACAT+AGG | + | chr1_1:10758152-10758171 | None:intergenic | 35.0% | |
| CAGTTAAAGTTGAATCCATC+TGG | - | chr1_1:10758302-10758321 | Msa0007500:intron | 35.0% | |
| TTTCAGCTAGGAATCAAACT+CGG | + | chr1_1:10758333-10758352 | None:intergenic | 35.0% | |
| TTCCTAGCTGAAACAATTCT+TGG | - | chr1_1:10758340-10758359 | Msa0007500:intron | 35.0% | |
| TTGGTTGAAGAGAAATAGAG+AGG | + | chr1_1:10758533-10758552 | None:intergenic | 35.0% | |
| !! | CAGAGCTGAAGTATTTTGTT+GGG | - | chr1_1:10758684-10758703 | Msa0007500:intron | 35.0% |
| ATCAAGATGCCATCAATAGA+CGG | + | chr1_1:10758866-10758885 | None:intergenic | 35.0% | |
| TTTGTCTAATCTTATGGTGC+TGG | - | chr1_1:10758991-10759010 | Msa0007500:CDS | 35.0% | |
| AGGTAGACTTTAATGCGTTT+AGG | - | chr1_1:10759167-10759186 | Msa0007500:intron | 35.0% | |
| GAAATAGCGATACATGTCTT+CGG | + | chr1_1:10759380-10759399 | None:intergenic | 35.0% | |
| ! | ATTTAGACAGAAGCACAAGT+CGG | + | chr1_1:10759430-10759449 | None:intergenic | 35.0% |
| ! | TTCCTATTAAACTGATGGAC+AGG | - | chr1_1:10759604-10759623 | Msa0007500:CDS | 35.0% |
| ATTATGGGGAAGAGACTAAT+TGG | - | chr1_1:10759704-10759723 | Msa0007500:intron | 35.0% | |
| CTGCAATAAAAAACTGGAGA+AGG | + | chr1_1:10759842-10759861 | None:intergenic | 35.0% | |
| TGAATGCAAAGGGATAGTTA+CGG | + | chr1_1:10759982-10760001 | None:intergenic | 35.0% | |
| GAGTACGATTTGAATGCAAA+GGG | + | chr1_1:10759992-10760011 | None:intergenic | 35.0% | |
| CACAACTATGGTATAGTTGT+GGG | + | chr1_1:10760020-10760039 | None:intergenic | 35.0% | |
| ! | TAATAGCAGAAGCACAACTA+TGG | + | chr1_1:10760032-10760051 | None:intergenic | 35.0% |
| !! | GTTCTTGGTTTGTAAAGTCA+TGG | + | chr1_1:10760055-10760074 | None:intergenic | 35.0% |
| ! | GCAATACGATTGCTTTCTTT+TGG | - | chr1_1:10760151-10760170 | Msa0007500:intron | 35.0% |
| AGGTTTGGCATGATGTTAAT+AGG | - | chr1_1:10760235-10760254 | Msa0007500:intron | 35.0% | |
| GATGTTAATAGGTCTCTACA+AGG | - | chr1_1:10760246-10760265 | Msa0007500:intron | 35.0% | |
| TGTTAATAGGTCTCTACAAG+GGG | - | chr1_1:10760248-10760267 | Msa0007500:intron | 35.0% | |
| GATCTTTACTCCTTGAAACA+AGG | - | chr1_1:10760300-10760319 | Msa0007500:intron | 35.0% | |
| GAAAACATGTAGGTCAAGAA+TGG | + | chr1_1:10760582-10760601 | None:intergenic | 35.0% | |
| ! | TTCTTGACCTACATGTTTTC+TGG | - | chr1_1:10760582-10760601 | Msa0007500:intron | 35.0% |
| TCATATGCCAGAAAACATGT+AGG | + | chr1_1:10760592-10760611 | None:intergenic | 35.0% | |
| ! | ACAGGCCATAATGTTTTTCA+TGG | - | chr1_1:10760636-10760655 | Msa0007500:intron | 35.0% |
| TTCTCAATGCTTGAAATACC+CGG | + | chr1_1:10760744-10760763 | None:intergenic | 35.0% | |
| TGTCATATCCTTTCACAGTT+TGG | - | chr1_1:10760846-10760865 | Msa0007500:intron | 35.0% | |
| AGAGTTGCAATAGTGATCTT+AGG | - | chr1_1:10760934-10760953 | Msa0007500:intron | 35.0% | |
| TTATGGTCCCAATGTTTCAT+CGG | - | chr1_1:10761203-10761222 | Msa0007500:CDS | 35.0% | |
| ! | TTTTCCACCGATGAAACATT+GGG | + | chr1_1:10761213-10761232 | None:intergenic | 35.0% |
| ! | TTTTTCCACCGATGAAACAT+TGG | + | chr1_1:10761214-10761233 | None:intergenic | 35.0% |
| GTTACTACCACAGTGAGTTT+AGG | - | chr1_1:10757401-10757420 | Msa0007500:three_prime_UTR | 40.0% | |
| ! | GTGGTGAATGAGTTTAGGTT+TGG | + | chr1_1:10757490-10757509 | None:intergenic | 40.0% |
| AGGATGTGGTGAATGAGTTT+AGG | + | chr1_1:10757495-10757514 | None:intergenic | 40.0% | |
| GATTTGAAGAAGGAGAAGAG+AGG | + | chr1_1:10757515-10757534 | None:intergenic | 40.0% | |
| !! | AGGGTTCTGAGATTTGAAGA+AGG | + | chr1_1:10757525-10757544 | None:intergenic | 40.0% |
| ! | CTTTGTGATTCTGGAAGAAG+CGG | + | chr1_1:10757553-10757572 | None:intergenic | 40.0% |
| TTCTGACAAAGAACTCGACA+AGG | - | chr1_1:10757620-10757639 | Msa0007500:three_prime_UTR | 40.0% | |
| AAATTCTCTTAGGTCCCGTT+TGG | + | chr1_1:10757936-10757955 | None:intergenic | 40.0% | |
| CATAGAACATAGGCCATGTT+TGG | + | chr1_1:10758142-10758161 | None:intergenic | 40.0% | |
| AGCCAAGAATTGTTTCAGCT+AGG | + | chr1_1:10758345-10758364 | None:intergenic | 40.0% | |
| TAGTAATTTGGGGATTGGGT+GGG | + | chr1_1:10758384-10758403 | None:intergenic | 40.0% | |
| ACCCAATCCCCAAATTACTA+GGG | - | chr1_1:10758384-10758403 | Msa0007500:intron | 40.0% | |
| CCAACAAAATACTTCAGCTC+TGG | + | chr1_1:10758686-10758705 | None:intergenic | 40.0% | |
| !! | CCAGAGCTGAAGTATTTTGT+TGG | - | chr1_1:10758683-10758702 | Msa0007500:intron | 40.0% |
| !! | GCTGAAGTATTTTGTTGGGA+TGG | - | chr1_1:10758688-10758707 | Msa0007500:intron | 40.0% |
| ! | GTATTTTGTTGGGATGGATG+TGG | - | chr1_1:10758694-10758713 | Msa0007500:intron | 40.0% |
| !!! | TCAGTTCAGTTTTGGACGAT+AGG | - | chr1_1:10758750-10758769 | Msa0007500:intron | 40.0% |
| !!! | CAGTTCAGTTTTGGACGATA+GGG | - | chr1_1:10758751-10758770 | Msa0007500:intron | 40.0% |
| CACAGTAAACACTTTCACAC+TGG | + | chr1_1:10758780-10758799 | None:intergenic | 40.0% | |
| CACATCAAATCTGTGCTTAG+AGG | - | chr1_1:10758815-10758834 | Msa0007500:intron | 40.0% | |
| CAAATCTGTGCTTAGAGGAA+CGG | - | chr1_1:10758820-10758839 | Msa0007500:intron | 40.0% | |
| AAATCTGTGCTTAGAGGAAC+GGG | - | chr1_1:10758821-10758840 | Msa0007500:intron | 40.0% | |
| TTAGAGGATCCGTCTATTGA+TGG | - | chr1_1:10758854-10758873 | Msa0007500:intron | 40.0% | |
| ! | GTCTATTGATGGCATCTTGA+TGG | - | chr1_1:10758865-10758884 | Msa0007500:intron | 40.0% |
| ! | TCTTATGGTGCTGGAATTTG+TGG | - | chr1_1:10759000-10759019 | Msa0007500:CDS | 40.0% |
| AACGCATTAAAGTCTACCTG+AGG | + | chr1_1:10759166-10759185 | None:intergenic | 40.0% | |
| ! | TTTAGACAGAAGCACAAGTC+GGG | + | chr1_1:10759429-10759448 | None:intergenic | 40.0% |
| TGTATTACTCTGCAGTAAGC+AGG | + | chr1_1:10759574-10759593 | None:intergenic | 40.0% | |
| ATTGTCCAAGCTCGTTTAGA+AGG | - | chr1_1:10759745-10759764 | Msa0007500:intron | 40.0% | |
| CGAGTACGATTTGAATGCAA+AGG | + | chr1_1:10759993-10760012 | None:intergenic | 40.0% | |
| GCACAACTATGGTATAGTTG+TGG | + | chr1_1:10760021-10760040 | None:intergenic | 40.0% | |
| ACACACTCTTCTTCTGTTCA+TGG | - | chr1_1:10760121-10760140 | Msa0007500:intron | 40.0% | |
| ! | AGTATCATGAGCTTTGACAC+AGG | - | chr1_1:10760618-10760637 | Msa0007500:intron | 40.0% |
| GTTGGATAAAAACAGCTACC+CGG | - | chr1_1:10760722-10760741 | Msa0007500:intron | 40.0% | |
| TTGGATAAAAACAGCTACCC+GGG | - | chr1_1:10760723-10760742 | Msa0007500:intron | 40.0% | |
| TCTCAATGCTTGAAATACCC+GGG | + | chr1_1:10760743-10760762 | None:intergenic | 40.0% | |
| TGATGAACTGAAGACTCTTG+AGG | - | chr1_1:10760774-10760793 | Msa0007500:intron | 40.0% | |
| !!! | TGTTTTGACTGTCTTGCATC+TGG | - | chr1_1:10760811-10760830 | Msa0007500:intron | 40.0% |
| CATATCCTTTCACAGTTTGG+AGG | - | chr1_1:10760849-10760868 | Msa0007500:intron | 40.0% | |
| GAAATGAAGACATGGGAGAA+GGG | - | chr1_1:10760911-10760930 | Msa0007500:intron | 40.0% | |
| TGGATAAGACAAGTAATGCC+TGG | - | chr1_1:10760990-10761009 | Msa0007500:CDS | 40.0% | |
| CAAGTAATGCCTGGATCAAA+TGG | - | chr1_1:10760999-10761018 | Msa0007500:CDS | 40.0% | |
| TCTTCTTCTGACGGAGTAAT+CGG | + | chr1_1:10761044-10761063 | None:intergenic | 40.0% | |
| AAGTTCTCCTCTTCTTCTGA+CGG | + | chr1_1:10761053-10761072 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGTGCAAAGCTCA+GGG | - | chr1_1:10761082-10761101 | Msa0007500:CDS | 40.0% |
| TCATCGGTGGAAAAATGTCA+AGG | - | chr1_1:10761219-10761238 | Msa0007500:CDS | 40.0% | |
| TACCACAGTGAGTTTAGGTC+TGG | - | chr1_1:10757406-10757425 | Msa0007500:three_prime_UTR | 45.0% | |
| TTCCAGACCTAAACTCACTG+TGG | + | chr1_1:10757411-10757430 | None:intergenic | 45.0% | |
| AAGAAGGAGAAGAGAGGATG+TGG | + | chr1_1:10757509-10757528 | None:intergenic | 45.0% | |
| !!! | AAGTGCTGCTTCGGTTTTCT+TGG | + | chr1_1:10757577-10757596 | None:intergenic | 45.0% |
| ! | ACGCGTTCTTCTCTTTTCCT+TGG | + | chr1_1:10757601-10757620 | None:intergenic | 45.0% |
| TCTTAGGTCCCGTTTGGATT+AGG | + | chr1_1:10757930-10757949 | None:intergenic | 45.0% | |
| TCAAACTCGGATACTCCAGA+TGG | + | chr1_1:10758320-10758339 | None:intergenic | 45.0% | |
| AGTAATTTGGGGATTGGGTG+GGG | + | chr1_1:10758383-10758402 | None:intergenic | 45.0% | |
| CTAGTAATTTGGGGATTGGG+TGG | + | chr1_1:10758385-10758404 | None:intergenic | 45.0% | |
| CACCCAATCCCCAAATTACT+AGG | - | chr1_1:10758383-10758402 | Msa0007500:intron | 45.0% | |
| CCCCTAGTAATTTGGGGATT+GGG | + | chr1_1:10758388-10758407 | None:intergenic | 45.0% | |
| CCCAATCCCCAAATTACTAG+GGG | - | chr1_1:10758385-10758404 | Msa0007500:intron | 45.0% | |
| TCTTAATCCCCCAGTTTCGA+GGG | + | chr1_1:10758411-10758430 | None:intergenic | 45.0% | |
| ! | ATCCCGCATCAGTTCAGTTT+TGG | - | chr1_1:10758742-10758761 | Msa0007500:intron | 45.0% |
| GTCCAAAACTGAACTGATGC+GGG | + | chr1_1:10758747-10758766 | None:intergenic | 45.0% | |
| CGTCCAAAACTGAACTGATG+CGG | + | chr1_1:10758748-10758767 | None:intergenic | 45.0% | |
| TAGGTGGATGATCCTCAAAG+AGG | - | chr1_1:10759097-10759116 | Msa0007500:CDS | 45.0% | |
| AGCACACTGAATCCTCTTTG+AGG | + | chr1_1:10759112-10759131 | None:intergenic | 45.0% | |
| CAAAGAGGATTCAGTGTGCT+TGG | - | chr1_1:10759112-10759131 | Msa0007500:CDS | 45.0% | |
| AGGATCCATGCGCATATCAA+GGG | + | chr1_1:10759146-10759165 | None:intergenic | 45.0% | |
| TACATGTCTTCGGTTGGAGT+TGG | + | chr1_1:10759370-10759389 | None:intergenic | 45.0% | |
| TAGCGATACATGTCTTCGGT+TGG | + | chr1_1:10759376-10759395 | None:intergenic | 45.0% | |
| GGCCTGTCCATCAGTTTAAT+AGG | + | chr1_1:10759609-10759628 | None:intergenic | 45.0% | |
| !! | CTTTAAGGCTTGCCTGTCAT+AGG | + | chr1_1:10759630-10759649 | None:intergenic | 45.0% |
| TTCTTGGCCAGATACTGAAG+TGG | - | chr1_1:10759666-10759685 | Msa0007500:intron | 45.0% | |
| TCTTGGCCAGATACTGAAGT+GGG | - | chr1_1:10759667-10759686 | Msa0007500:intron | 45.0% | |
| GCCGTATCCTAAGGGATTAT+GGG | - | chr1_1:10759689-10759708 | Msa0007500:intron | 45.0% | |
| CCCCATAATCCCTTAGGATA+CGG | + | chr1_1:10759693-10759712 | None:intergenic | 45.0% | |
| CCGTATCCTAAGGGATTATG+GGG | - | chr1_1:10759690-10759709 | Msa0007500:intron | 45.0% | |
| TCTCTTCCCCATAATCCCTT+AGG | + | chr1_1:10759699-10759718 | None:intergenic | 45.0% | |
| ATCCACCTTCTAAACGAGCT+TGG | + | chr1_1:10759753-10759772 | None:intergenic | 45.0% | |
| TGACTCCTGGAATGAAAGGT+AGG | - | chr1_1:10759812-10759831 | Msa0007500:intron | 45.0% | |
| GATGACCTACCTTTCATTCC+AGG | + | chr1_1:10759820-10759839 | None:intergenic | 45.0% | |
| ! | AAGAGTGTGTCTTCCTCCAA+AGG | + | chr1_1:10760111-10760130 | None:intergenic | 45.0% |
| TCATCGGGACATACATTGCA+TGG | + | chr1_1:10760207-10760226 | None:intergenic | 45.0% | |
| CAAACCTCTGATGCATCATC+GGG | + | chr1_1:10760222-10760241 | None:intergenic | 45.0% | |
| CCAAACCTCTGATGCATCAT+CGG | + | chr1_1:10760223-10760242 | None:intergenic | 45.0% | |
| TTTGACTGTCTTGCATCTGG+TGG | - | chr1_1:10760814-10760833 | Msa0007500:intron | 45.0% | |
| TCTGTCCTCCAAACTGTGAA+AGG | + | chr1_1:10760857-10760876 | None:intergenic | 45.0% | |
| GGAAATGAAGACATGGGAGA+AGG | - | chr1_1:10760910-10760929 | Msa0007500:intron | 45.0% | |
| GATTACTCCGTCAGAAGAAG+AGG | - | chr1_1:10761043-10761062 | Msa0007500:CDS | 45.0% | |
| GCTTTGCACTTCTACTTCTG+CGG | + | chr1_1:10761079-10761098 | None:intergenic | 45.0% | |
| ! | GAAGTAGAAGTGCAAAGCTC+AGG | - | chr1_1:10761081-10761100 | Msa0007500:CDS | 45.0% |
| ! | TGTGATTCTGGAAGAAGCGG+TGG | + | chr1_1:10757550-10757569 | None:intergenic | 50.0% |
| !! | TTCCTTGGCAAGTGCTGCTT+CGG | + | chr1_1:10757586-10757605 | None:intergenic | 50.0% |
| !! | GATTGTACTCTTGGTGCTGC+TGG | - | chr1_1:10757747-10757766 | Msa0007500:three_prime_UTR | 50.0% |
| GCCCCTAGTAATTTGGGGAT+TGG | + | chr1_1:10758389-10758408 | None:intergenic | 50.0% | |
| TCGAGGGCCCCTAGTAATTT+GGG | + | chr1_1:10758395-10758414 | None:intergenic | 50.0% | |
| TTCGAGGGCCCCTAGTAATT+TGG | + | chr1_1:10758396-10758415 | None:intergenic | 50.0% | |
| GTCTTAATCCCCCAGTTTCG+AGG | + | chr1_1:10758412-10758431 | None:intergenic | 50.0% | |
| ! | TGATGGCATCTTGATGGACC+TGG | - | chr1_1:10758871-10758890 | Msa0007500:intron | 50.0% |
| ! | GATGGCATCTTGATGGACCT+GGG | - | chr1_1:10758872-10758891 | Msa0007500:intron | 50.0% |
| ! | GGATTCAGTGTGCTTGGTGA+TGG | - | chr1_1:10759118-10759137 | Msa0007500:intron | 50.0% |
| GGATCCATGCGCATATCAAG+GGG | + | chr1_1:10759145-10759164 | None:intergenic | 50.0% | |
| GAGGATCCATGCGCATATCA+AGG | + | chr1_1:10759147-10759166 | None:intergenic | 50.0% | |
| TGATATGCGCATGGATCCTC+AGG | - | chr1_1:10759147-10759166 | Msa0007500:intron | 50.0% | |
| ATACGGCCCACTTCAGTATC+TGG | + | chr1_1:10759676-10759695 | None:intergenic | 50.0% | |
| TGAAGTGGGCCGTATCCTAA+GGG | - | chr1_1:10759681-10759700 | Msa0007500:intron | 50.0% | |
| GGCCGTATCCTAAGGGATTA+TGG | - | chr1_1:10759688-10759707 | Msa0007500:intron | 50.0% | |
| GTCCAAGCTCGTTTAGAAGG+TGG | - | chr1_1:10759748-10759767 | Msa0007500:intron | 50.0% | |
| GAGATCCAGCAAGTCAGTAG+TGG | + | chr1_1:10759782-10759801 | None:intergenic | 50.0% | |
| CGTGTGACTCCTGGAATGAA+AGG | - | chr1_1:10759808-10759827 | Msa0007500:intron | 50.0% | |
| AAAGGGATAGTTACGGCGAG+GGG | + | chr1_1:10759975-10759994 | None:intergenic | 50.0% | |
| CAAAGGGATAGTTACGGCGA+GGG | + | chr1_1:10759976-10759995 | None:intergenic | 50.0% | |
| ATGTCCCGATGATGCATCAG+AGG | - | chr1_1:10760215-10760234 | Msa0007500:intron | 50.0% | |
| CCGATGATGCATCAGAGGTT+TGG | - | chr1_1:10760220-10760239 | Msa0007500:intron | 50.0% | |
| ACACTGTAACAGGGGAAGAC+AGG | - | chr1_1:10760699-10760718 | Msa0007500:intron | 50.0% | |
| CACTGTAACAGGGGAAGACA+GGG | - | chr1_1:10760700-10760719 | Msa0007500:intron | 50.0% | |
| ACTGTCTTGCATCTGGTGGA+AGG | - | chr1_1:10760818-10760837 | Msa0007500:intron | 50.0% | |
| TGGTCCCAATGTTTCATCGG+TGG | - | chr1_1:10761206-10761225 | Msa0007500:CDS | 50.0% | |
| TCTGGAAGAAGCGGTGGTGA+GGG | + | chr1_1:10757544-10757563 | None:intergenic | 55.0% | |
| ! | TTCTGGAAGAAGCGGTGGTG+AGG | + | chr1_1:10757545-10757564 | None:intergenic | 55.0% |
| AACCGAAGCAGCACTTGCCA+AGG | - | chr1_1:10757581-10757600 | Msa0007500:three_prime_UTR | 55.0% | |
| CGAGGGCCCCTAGTAATTTG+GGG | + | chr1_1:10758394-10758413 | None:intergenic | 55.0% | |
| TTACTAGGGGCCCTCGAAAC+TGG | - | chr1_1:10758398-10758417 | Msa0007500:intron | 55.0% | |
| TACTAGGGGCCCTCGAAACT+GGG | - | chr1_1:10758399-10758418 | Msa0007500:intron | 55.0% | |
| CCTGCATAGATGACATGCCC+AGG | + | chr1_1:10758892-10758911 | None:intergenic | 55.0% | |
| CCTGGGCATGTCATCTATGC+AGG | - | chr1_1:10758889-10758908 | Msa0007500:intron | 55.0% | |
| TGGACCCCTTGATATGCGCA+TGG | - | chr1_1:10759138-10759157 | Msa0007500:intron | 55.0% | |
| ! | CTGATGGACAGGCCTATGAC+AGG | - | chr1_1:10759615-10759634 | Msa0007500:CDS | 55.0% |
| CTGAAGTGGGCCGTATCCTA+AGG | - | chr1_1:10759680-10759699 | Msa0007500:intron | 55.0% | |
| !! | GCACTCCACTACTGACTTGC+TGG | - | chr1_1:10759774-10759793 | Msa0007500:intron | 55.0% |
| CTCATTCAGCGTGTGACTCC+TGG | - | chr1_1:10759799-10759818 | Msa0007500:intron | 55.0% | |
| AAGGGATAGTTACGGCGAGG+GGG | + | chr1_1:10759974-10759993 | None:intergenic | 55.0% | |
| GCAAAGGGATAGTTACGGCG+AGG | + | chr1_1:10759977-10759996 | None:intergenic | 55.0% | |
| GTAACAGGGGAAGACAGGGT+TGG | - | chr1_1:10760704-10760723 | Msa0007500:intron | 55.0% | |
| ACTAGGGGCCCTCGAAACTG+GGG | - | chr1_1:10758400-10758419 | Msa0007500:intron | 60.0% | |
| TGGGATGGATGTGGACCCTG+TGG | - | chr1_1:10758703-10758722 | Msa0007500:intron | 60.0% | |
| GGGATGGATGTGGACCCTGT+GGG | - | chr1_1:10758704-10758723 | Msa0007500:intron | 60.0% | |
| GGATGGATGTGGACCCTGTG+GGG | - | chr1_1:10758705-10758724 | Msa0007500:intron | 60.0% | |
| TGTGCTTAGAGGAACGGGCG+AGG | - | chr1_1:10758826-10758845 | Msa0007500:intron | 60.0% | |
| !! | AACGGGCGAGGAGCACTTAG+AGG | - | chr1_1:10758838-10758857 | Msa0007500:intron | 60.0% |
| AGGGATAGTTACGGCGAGGG+GGG | + | chr1_1:10759973-10759992 | None:intergenic | 60.0% | |
| CTAGGGGCCCTCGAAACTGG+GGG | - | chr1_1:10758401-10758420 | Msa0007500:intron | 65.0% | |
| GGACCCTGTGGGGAGTGACA+CGG | - | chr1_1:10758715-10758734 | Msa0007500:intron | 65.0% | |
| ! | GAGCCGTGTCACTCCCCACA+GGG | + | chr1_1:10758721-10758740 | None:intergenic | 65.0% |
| ! | TGAGCCGTGTCACTCCCCAC+AGG | + | chr1_1:10758722-10758741 | None:intergenic | 65.0% |
| GATAGTTACGGCGAGGGGGG+GGG | + | chr1_1:10759970-10759989 | None:intergenic | 65.0% | |
| GGATAGTTACGGCGAGGGGG+GGG | + | chr1_1:10759971-10759990 | None:intergenic | 65.0% | |
| GGGATAGTTACGGCGAGGGG+GGG | + | chr1_1:10759972-10759991 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10757372 | 10761397 | 10757372 | ID=Msa0007500;Name=Msa0007500 |
| chr1_1 | mRNA | 10757372 | 10761397 | 10757372 | ID=Msa0007500-mRNA-1;Parent=Msa0007500;Name=Msa0007500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=75|0.8|0.83|1|0.8|0.66|6|407|365 |
| chr1_1 | exon | 10757372 | 10757425 | 10757372 | ID=Msa0007500-mRNA-1:exon:3919;Parent=Msa0007500-mRNA-1 |
| chr1_1 | exon | 10757453 | 10758058 | 10757453 | ID=Msa0007500-mRNA-1:exon:3918;Parent=Msa0007500-mRNA-1 |
| chr1_1 | exon | 10758936 | 10759132 | 10758936 | ID=Msa0007500-mRNA-1:exon:3917;Parent=Msa0007500-mRNA-1 |
| chr1_1 | exon | 10759601 | 10759669 | 10759601 | ID=Msa0007500-mRNA-1:exon:3916;Parent=Msa0007500-mRNA-1 |
| chr1_1 | exon | 10759859 | 10760101 | 10759859 | ID=Msa0007500-mRNA-1:exon:3915;Parent=Msa0007500-mRNA-1 |
| chr1_1 | exon | 10760987 | 10761397 | 10760987 | ID=Msa0007500-mRNA-1:exon:3914;Parent=Msa0007500-mRNA-1 |
| chr1_1 | five_prime_UTR | 10761323 | 10761397 | 10761323 | ID=Msa0007500-mRNA-1:five_prime_utr;Parent=Msa0007500-mRNA-1 |
| chr1_1 | CDS | 10760987 | 10761322 | 10760987 | ID=Msa0007500-mRNA-1:cds;Parent=Msa0007500-mRNA-1 |
| chr1_1 | CDS | 10759859 | 10760101 | 10759859 | ID=Msa0007500-mRNA-1:cds;Parent=Msa0007500-mRNA-1 |
| chr1_1 | CDS | 10759601 | 10759669 | 10759601 | ID=Msa0007500-mRNA-1:cds;Parent=Msa0007500-mRNA-1 |
| chr1_1 | CDS | 10758936 | 10759132 | 10758936 | ID=Msa0007500-mRNA-1:cds;Parent=Msa0007500-mRNA-1 |
| chr1_1 | CDS | 10757806 | 10758058 | 10757806 | ID=Msa0007500-mRNA-1:cds;Parent=Msa0007500-mRNA-1 |
| chr1_1 | three_prime_UTR | 10757453 | 10757805 | 10757453 | ID=Msa0007500-mRNA-1:three_prime_utr;Parent=Msa0007500-mRNA-1 |
| chr1_1 | three_prime_UTR | 10757372 | 10757425 | 10757372 | ID=Msa0007500-mRNA-1:three_prime_utr;Parent=Msa0007500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
