Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007460 | XP_013465755.1 | 96.411 | 418 | 13 | 2 | 1 | 417 | 1 | 417 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007460 | sp|Q6MEG4|RSMH_PARUW | 39.766 | 342 | 172 | 5 | 77 | 417 | 6 | 314 | 2.08e-73 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007460 | Msa0007500 | 0.899086 | 2.807108e-77 | -8.615850e-47 |
| Msa0007460 | Msa0319720 | 0.805152 | 1.532280e-49 | -8.615850e-47 |
| Msa0007460 | Msa1014700 | 0.802657 | 5.055547e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007460 | MtrunA17_Chr1g0148351 | 96.411 | 418 | 13 | 2 | 1 | 417 | 1 | 417 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007460 | AT5G10910.1 | 63.395 | 377 | 125 | 5 | 46 | 417 | 66 | 434 | 4.23e-153 | 440 |
Find 112 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATGTCTTCTGCTTTA+AGG | 0.094672 | 1_1:+10718569 | None:intergenic |
| ACATTTCTTAATATAATTAA+AGG | 0.204441 | 1_1:-10717318 | Msa0007460:CDS |
| CAGAAGACATATTAAATTCT+TGG | 0.206992 | 1_1:-10718561 | Msa0007460:CDS |
| TTTCTTGGTCTTTGTGATTC+TGG | 0.209292 | 1_1:+10720653 | None:intergenic |
| TATCTTTGCTTTAGAAATTA+TGG | 0.213735 | 1_1:-10717020 | Msa0007460:three_prime_UTR |
| GAACAAACAAGTACACAAAA+TGG | 0.249164 | 1_1:-10720784 | Msa0007460:exon |
| GGCCGTATCCTAAGGGATTA+TGG | 0.262340 | 1_1:-10718523 | Msa0007460:CDS |
| ATCCCGCATCAGTTCAGTTT+TGG | 0.280708 | 1_1:-10719469 | Msa0007460:CDS |
| CTCCTTGGCAAGTGCTGCTT+CGG | 0.314435 | 1_1:+10720629 | None:intergenic |
| AGGATGTGGTGAATGAGTTT+AGG | 0.329203 | 1_1:+10720720 | None:intergenic |
| TCTTTCGTTGATTGTACTCT+TGG | 0.335075 | 1_1:-10720474 | Msa0007460:CDS |
| CTCCTGGTTGAGTTCTTTGT+CGG | 0.339640 | 1_1:+10720590 | None:intergenic |
| GCACTCCACTACTGACTTGC+TGG | 0.347460 | 1_1:-10718437 | Msa0007460:CDS |
| CTCATTCAGCGTGTGACTCC+TGG | 0.359723 | 1_1:-10718412 | Msa0007460:CDS |
| AGAGTTGCAATAGTGATCTT+AGG | 0.362980 | 1_1:-10717272 | Msa0007460:CDS |
| GTTACTACCACAGTGAGTTT+AGG | 0.366864 | 1_1:-10720811 | Msa0007460:five_prime_UTR |
| TGTCATATCCTTTCACAGTT+TGG | 0.376437 | 1_1:-10717361 | Msa0007460:CDS |
| TGTTATGCTTTCTGAAGTCT+TGG | 0.382234 | 1_1:-10720523 | Msa0007460:CDS |
| GATGACCTACCTTTCATTCC+AGG | 0.384669 | 1_1:+10718394 | None:intergenic |
| ATACGGCCCACTTCAGTATC+TGG | 0.387830 | 1_1:+10718538 | None:intergenic |
| GTCTATTGATGGCATCTTGA+TGG | 0.389523 | 1_1:-10719346 | Msa0007460:CDS |
| CACATCAAGTCTGTGCTTAG+AGG | 0.395737 | 1_1:-10719396 | Msa0007460:CDS |
| ATTATGGGGAAGAGACTAAT+TGG | 0.397445 | 1_1:-10718507 | Msa0007460:CDS |
| CAAGTAATGCCTGGATCAAA+TGG | 0.400903 | 1_1:-10717207 | Msa0007460:CDS |
| GAAGTAGAAGTGCAAAGCTC+AGG | 0.404929 | 1_1:-10717125 | Msa0007460:CDS |
| AAGACTTCAGAAAGCATAAC+AGG | 0.411201 | 1_1:+10720525 | None:intergenic |
| TCTTCTTCTGACGGAGTAAT+CGG | 0.411260 | 1_1:+10717165 | None:intergenic |
| GAAAGAAGATAAGGAACAAT+TGG | 0.414138 | 1_1:+10720491 | None:intergenic |
| GTGGTGAATGAGTTTAGGTT+TGG | 0.421810 | 1_1:+10720725 | None:intergenic |
| CCAACAAAATACTTCAACTC+TGG | 0.433293 | 1_1:+10719528 | None:intergenic |
| TGAAAGTGTTTACTGTGTTA+AGG | 0.437606 | 1_1:-10719428 | Msa0007460:CDS |
| AACGGGCGAGGAGCACTTAG+AGG | 0.438530 | 1_1:-10719373 | Msa0007460:CDS |
| ACGCGTTCTTCTCTTCTCCT+TGG | 0.439568 | 1_1:+10720614 | None:intergenic |
| TTAGAGGATCCGTCTATTGA+TGG | 0.440253 | 1_1:-10719357 | Msa0007460:CDS |
| GATTGTACTCTTGGTGCTGC+TGG | 0.441916 | 1_1:-10720465 | Msa0007460:CDS |
| AAGTCTGTGCTTAGAGGAAC+GGG | 0.443278 | 1_1:-10719390 | Msa0007460:CDS |
| GCCGTATCCTAAGGGATTAT+GGG | 0.446424 | 1_1:-10718522 | Msa0007460:CDS |
| AAGAAGGAGAAGAGAGGATG+TGG | 0.451279 | 1_1:+10720706 | None:intergenic |
| TACCACAGTGAGTTTAGGTC+TGG | 0.451776 | 1_1:-10720806 | Msa0007460:five_prime_UTR |
| AGATTCATAAGAATGCTGTT+TGG | 0.456202 | 1_1:-10717084 | Msa0007460:three_prime_UTR |
| TGAATGAAATAGGTGATTAG+AGG | 0.456382 | 1_1:-10719555 | Msa0007460:intron |
| TGATGGCATCTTGATGGACC+TGG | 0.458496 | 1_1:-10719340 | Msa0007460:CDS |
| GAAATGAAGACATGGGAGAA+GGG | 0.463988 | 1_1:-10717296 | Msa0007460:CDS |
| TCTCTTCCCCATAATCCCTT+AGG | 0.464888 | 1_1:+10718515 | None:intergenic |
| TCATAAATATATACAACATA+AGG | 0.466028 | 1_1:-10716876 | Msa0007460:intron |
| ATTGTCCAAGCTCGTTTAGA+AGG | 0.469453 | 1_1:-10718466 | Msa0007460:CDS |
| CTGAAGTGGGCCGTATCCTA+AGG | 0.471585 | 1_1:-10718531 | Msa0007460:CDS |
| CATATCCTTTCACAGTTTGG+AGG | 0.473506 | 1_1:-10717358 | Msa0007460:CDS |
| GAGGATCCATGCGCATATCA+AGG | 0.478591 | 1_1:+10719067 | None:intergenic |
| TGAGCCGTGTCACGCCCCAC+AGG | 0.479252 | 1_1:+10719492 | None:intergenic |
| AACAAACAAGTACACAAAAT+GGG | 0.481063 | 1_1:-10720783 | Msa0007460:exon |
| TGATATGCGCATGGATCCTC+AGG | 0.481378 | 1_1:-10719064 | Msa0007460:intron |
| AGAATAATTCCATTTGATCC+AGG | 0.483518 | 1_1:+10717198 | None:intergenic |
| CCTGGGCATGTCATCTATGC+AGG | 0.484557 | 1_1:-10719322 | Msa0007460:intron |
| AAGTTCTCCTCTTCTTCTGA+CGG | 0.491538 | 1_1:+10717156 | None:intergenic |
| GGGATGGATGTGGACCCTGT+GGG | 0.493899 | 1_1:-10719507 | Msa0007460:CDS |
| AAAGCTCGATTATTGTCTCC+TGG | 0.497527 | 1_1:+10720574 | None:intergenic |
| CCCCATAATCCCTTAGGATA+CGG | 0.499959 | 1_1:+10718521 | None:intergenic |
| ACTGTCTTGCATCTGGTGGA+AGG | 0.500980 | 1_1:-10717389 | Msa0007460:CDS |
| CAAAGAGGATTCAGTGTGCT+TGG | 0.501712 | 1_1:-10719099 | Msa0007460:CDS |
| ATCCACCTTCTAAACGAGCT+TGG | 0.511048 | 1_1:+10718461 | None:intergenic |
| TTTGACTGTCTTGCATCTGG+TGG | 0.515837 | 1_1:-10717393 | Msa0007460:CDS |
| AGGGTTCTGAGATTTGAAGA+AGG | 0.517857 | 1_1:+10720690 | None:intergenic |
| AAATGAAGACATGGGAGAAG+GGG | 0.519276 | 1_1:-10717295 | Msa0007460:CDS |
| TTCTCAATGCTTGAAATACC+CGG | 0.521739 | 1_1:+10717466 | None:intergenic |
| AGCACACTGAATCCTCTTTG+AGG | 0.522390 | 1_1:+10719102 | None:intergenic |
| TCTGTCCTCCAAACTGTGAA+AGG | 0.522906 | 1_1:+10717353 | None:intergenic |
| TGGGATGGATGTGGACCCTG+TGG | 0.531423 | 1_1:-10719508 | Msa0007460:CDS |
| GGACCCTGTGGGGCGTGACA+CGG | 0.534544 | 1_1:-10719496 | Msa0007460:CDS |
| ACAATCAACGAAAGAAGATA+AGG | 0.534604 | 1_1:+10720482 | None:intergenic |
| TGGATAAGACAAGTAATGCC+TGG | 0.535917 | 1_1:-10717216 | Msa0007460:CDS |
| TCTGGAAGAAGCGGTGGTGA+GGG | 0.537069 | 1_1:+10720671 | None:intergenic |
| GGAAATGAAGACATGGGAGA+AGG | 0.547942 | 1_1:-10717297 | Msa0007460:CDS |
| ATGATAGAAACTAACATTGG+TGG | 0.548892 | 1_1:+10720437 | None:intergenic |
| GGATTCAGTGTGCTTGGTGA+TGG | 0.548903 | 1_1:-10719093 | Msa0007460:CDS |
| TTCTGGAAGAAGCGGTGGTG+AGG | 0.550767 | 1_1:+10720670 | None:intergenic |
| GATTACTCCGTCAGAAGAAG+AGG | 0.555773 | 1_1:-10717163 | Msa0007460:CDS |
| CAAGTCTGTGCTTAGAGGAA+CGG | 0.559046 | 1_1:-10719391 | Msa0007460:CDS |
| CGTGTGACTCCTGGAATGAA+AGG | 0.560335 | 1_1:-10718403 | Msa0007460:intron |
| TTATGGTCCCAATGTTTCAT+CGG | 0.563048 | 1_1:-10717003 | Msa0007460:three_prime_UTR |
| GTCCAAAACTGAACTGATGC+GGG | 0.565422 | 1_1:+10719467 | None:intergenic |
| AACCGAAGCAGCACTTGCCA+AGG | 0.567853 | 1_1:-10720631 | Msa0007460:CDS |
| AGGATCCATGCGCATATCAA+GGG | 0.568453 | 1_1:+10719068 | None:intergenic |
| CACAGTAAACACTTTCACAC+TGG | 0.573467 | 1_1:+10719434 | None:intergenic |
| GAGATCCAGCAAGTCAGTAG+TGG | 0.573978 | 1_1:+10718432 | None:intergenic |
| GTCCAAGCTCGTTTAGAAGG+TGG | 0.576782 | 1_1:-10718463 | Msa0007460:CDS |
| ATTAAAGGAAATGAAGACAT+GGG | 0.581318 | 1_1:-10717303 | Msa0007460:CDS |
| TGATGAACTGAAGACTCTTG+AGG | 0.586961 | 1_1:-10717433 | Msa0007460:CDS |
| AAGTAGAAGTGCAAAGCTCA+GGG | 0.588150 | 1_1:-10717124 | Msa0007460:CDS |
| TGGTCCCAATGTTTCATCGG+TGG | 0.589834 | 1_1:-10717000 | Msa0007460:three_prime_UTR |
| ATCAAGATGCCATCAATAGA+CGG | 0.591644 | 1_1:+10719348 | None:intergenic |
| AATTAAAGGAAATGAAGACA+TGG | 0.596968 | 1_1:-10717304 | Msa0007460:CDS |
| CGTCCAAAACTGAACTGATG+CGG | 0.599707 | 1_1:+10719466 | None:intergenic |
| GAGCCGTGTCACGCCCCACA+GGG | 0.601670 | 1_1:+10719493 | None:intergenic |
| GGATGGATGTGGACCCTGTG+GGG | 0.604695 | 1_1:-10719506 | Msa0007460:CDS |
| CCTGCATAGATGACATGCCC+AGG | 0.608670 | 1_1:+10719322 | None:intergenic |
| TAGGTGGATGATCCTCAAAG+AGG | 0.608837 | 1_1:-10719114 | Msa0007460:CDS |
| TGAAGTGGGCCGTATCCTAA+GGG | 0.612320 | 1_1:-10718530 | Msa0007460:CDS |
| TGTGCTTAGAGGAACGGGCG+AGG | 0.612987 | 1_1:-10719385 | Msa0007460:CDS |
| GATTTGAAGAAGGAGAAGAG+AGG | 0.619729 | 1_1:+10720700 | None:intergenic |
| GCTTTGCACTTCTACTTCTG+CGG | 0.620414 | 1_1:+10717130 | None:intergenic |
| CTTTGTGATTCTGGAAGAAG+CGG | 0.636349 | 1_1:+10720662 | None:intergenic |
| TCTCAATGCTTGAAATACCC+GGG | 0.637844 | 1_1:+10717467 | None:intergenic |
| GATGGCATCTTGATGGACCT+GGG | 0.642501 | 1_1:-10719339 | Msa0007460:CDS |
| TTCTTGGCCAGATACTGAAG+TGG | 0.644803 | 1_1:-10718545 | Msa0007460:CDS |
| TGGACCCCTTGATATGCGCA+TGG | 0.647959 | 1_1:-10719073 | Msa0007460:CDS |
| TTCCGACAAAGAACTCAACC+AGG | 0.654853 | 1_1:-10720592 | Msa0007460:CDS |
| CCGTATCCTAAGGGATTATG+GGG | 0.656929 | 1_1:-10718521 | Msa0007460:CDS |
| TGTGATTCTGGAAGAAGCGG+TGG | 0.659825 | 1_1:+10720665 | None:intergenic |
| TCTTGGCCAGATACTGAAGT+GGG | 0.661677 | 1_1:-10718544 | Msa0007460:CDS |
| GGATCCATGCGCATATCAAG+GGG | 0.677700 | 1_1:+10719069 | None:intergenic |
| TTCCAGACCTAAACTCACTG+TGG | 0.693459 | 1_1:+10720804 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAGTATATATTTTTTTTA+TGG | + | chr1_1:10717893-10717912 | None:intergenic | 10.0% |
| !!! | ATTTTTTCAAATTCATAATA+TGG | - | chr1_1:10719387-10719406 | Msa0007460:CDS | 10.0% |
| !!! | TTTTTTCAAATTCATAATAT+GGG | - | chr1_1:10719388-10719407 | Msa0007460:CDS | 10.0% |
| !! | ACATTTCTTAATATAATTAA+AGG | - | chr1_1:10720353-10720372 | Msa0007460:intron | 10.0% |
| !!! | TTTTTCAAATTCATAATATG+GGG | - | chr1_1:10719389-10719408 | Msa0007460:CDS | 15.0% |
| !!! | TTTGTAATAAAATTTGTTCT+TGG | + | chr1_1:10719531-10719550 | None:intergenic | 15.0% |
| !!! | AACAAATTTTATTACAAAGA+TGG | - | chr1_1:10719533-10719552 | Msa0007460:CDS | 15.0% |
| !! | AAGTATAAAATATATATGCA+GGG | - | chr1_1:10719869-10719888 | Msa0007460:intron | 15.0% |
| !! | TCATAAATATATACAACATA+AGG | - | chr1_1:10720795-10720814 | Msa0007460:five_prime_UTR | 15.0% |
| !! | TTTATGATAGAAACTAACAT+TGG | + | chr1_1:10717240-10717259 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCTAAACA+TGG | - | chr1_1:10717585-10717604 | Msa0007460:intron | 20.0% |
| !! | AAATATTATTTAGCCAAAGA+CGG | - | chr1_1:10717656-10717675 | Msa0007460:intron | 20.0% |
| !!! | ATGTAATTTGTATAATCAAG+TGG | - | chr1_1:10717727-10717746 | Msa0007460:intron | 20.0% |
| !!! | GAACATTTTTACATAGTATT+TGG | + | chr1_1:10718012-10718031 | None:intergenic | 20.0% |
| !! | ATTGAATGATTGAATGAAAT+AGG | - | chr1_1:10718106-10718125 | Msa0007460:intron | 20.0% |
| !! | AATGTATCATATATAAAGCA+CGG | + | chr1_1:10718382-10718401 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAAAACATATA+AGG | + | chr1_1:10718541-10718560 | None:intergenic | 20.0% |
| !!! | CCTTATATGTTTTTTGTTTT+AGG | - | chr1_1:10718538-10718557 | Msa0007460:CDS | 20.0% |
| !!! | TATATGTTTTTTGTTTTAGG+TGG | - | chr1_1:10718541-10718560 | Msa0007460:CDS | 20.0% |
| !!! | ATTTCTATAATACAGTTTTG+TGG | - | chr1_1:10718855-10718874 | Msa0007460:intron | 20.0% |
| !! | TTTGTAAAGTAAACAATCAA+AGG | + | chr1_1:10719794-10719813 | None:intergenic | 20.0% |
| !! | GAAGTATAAAATATATATGC+AGG | - | chr1_1:10719868-10719887 | Msa0007460:intron | 20.0% |
| !!! | TATCTTTGCTTTAGAAATTA+TGG | - | chr1_1:10720651-10720670 | Msa0007460:CDS | 20.0% |
| ! | AACAAACAAGTACACAAAAT+GGG | - | chr1_1:10716888-10716907 | Msa0007460:intron | 25.0% |
| !! | TTCTTCTTATTTGTGTATTG+TGG | - | chr1_1:10717275-10717294 | Msa0007460:CDS | 25.0% |
| !! | CTATTTTCACAAATTCTCTT+AGG | + | chr1_1:10717405-10717424 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | - | chr1_1:10717472-10717491 | Msa0007460:CDS | 25.0% |
| ! | GGTTAACATGAAAAGTTATA+AGG | + | chr1_1:10717921-10717940 | None:intergenic | 25.0% |
| !! | TTACTGTGTTAAGGAATTTT+AGG | - | chr1_1:10718252-10718271 | Msa0007460:intron | 25.0% |
| ! | CATAAGATTAGACAAAATCA+TGG | + | chr1_1:10718447-10718466 | None:intergenic | 25.0% |
| !! | CATGATTTTGTCTAATCTTA+TGG | - | chr1_1:10718445-10718464 | Msa0007460:CDS | 25.0% |
| ! | TGTTAATGTTGTAGCATTTA+TGG | - | chr1_1:10718766-10718785 | Msa0007460:intron | 25.0% |
| !!! | GTCTCTTTTCTTAATTTGAA+TGG | - | chr1_1:10718803-10718822 | Msa0007460:intron | 25.0% |
| ! | ATGAGGTGAAAAAAGAAAAT+AGG | + | chr1_1:10718947-10718966 | None:intergenic | 25.0% |
| ! | TTAAGTAAATAAGTTACGTG+TGG | - | chr1_1:10718993-10719012 | Msa0007460:intron | 25.0% |
| ! | TTTCTTTCCTATTAAACTGA+TGG | - | chr1_1:10719059-10719078 | Msa0007460:intron | 25.0% |
| ! | TTAATATGTCTTCTGCTTTA+AGG | + | chr1_1:10719105-10719124 | None:intergenic | 25.0% |
| ! | CAGAAGACATATTAAATTCT+TGG | - | chr1_1:10719110-10719129 | Msa0007460:CDS | 25.0% |
| ! | ATTTCAATATGCATGAGAAA+TGG | + | chr1_1:10719352-10719371 | None:intergenic | 25.0% |
| ! | CATTTCTCAAATTCAAAACA+TGG | + | chr1_1:10719826-10719845 | None:intergenic | 25.0% |
| ! | AATTTGAGAAATGTAGTAGT+TGG | - | chr1_1:10719833-10719852 | Msa0007460:intron | 25.0% |
| ! | TAAAATATATATGCAGGGTA+AGG | - | chr1_1:10719874-10719893 | Msa0007460:intron | 25.0% |
| ! | ACTTTCCATGAAAAACATTA+TGG | + | chr1_1:10720107-10720126 | None:intergenic | 25.0% |
| !!! | AATTTTGATTACACTGTAAC+AGG | - | chr1_1:10720152-10720171 | Msa0007460:intron | 25.0% |
| !!! | ATTTTGATTACACTGTAACA+GGG | - | chr1_1:10720153-10720172 | Msa0007460:intron | 25.0% |
| ! | AATTAAAGGAAATGAAGACA+TGG | - | chr1_1:10720367-10720386 | Msa0007460:intron | 25.0% |
| ! | ATTAAAGGAAATGAAGACAT+GGG | - | chr1_1:10720368-10720387 | Msa0007460:intron | 25.0% |
| ! | AAATCAAAGAAAAAGAAGCA+TGG | - | chr1_1:10720435-10720454 | Msa0007460:intron | 25.0% |
| GAACAAACAAGTACACAAAA+TGG | - | chr1_1:10716887-10716906 | Msa0007460:intron | 30.0% | |
| GAAAGAAGATAAGGAACAAT+TGG | + | chr1_1:10717183-10717202 | None:intergenic | 30.0% | |
| ACAATCAACGAAAGAAGATA+AGG | + | chr1_1:10717192-10717211 | None:intergenic | 30.0% | |
| ATGATAGAAACTAACATTGG+TGG | + | chr1_1:10717237-10717256 | None:intergenic | 30.0% | |
| TTCCTAGCTGAAATAATTCT+TGG | - | chr1_1:10717799-10717818 | Msa0007460:intron | 30.0% | |
| GTGTGATTCAAATTCTTGAA+AGG | + | chr1_1:10717942-10717961 | None:intergenic | 30.0% | |
| TGAATGAAATAGGTGATTAG+AGG | - | chr1_1:10718116-10718135 | Msa0007460:intron | 30.0% | |
| !! | CAGAGTTGAAGTATTTTGTT+GGG | - | chr1_1:10718144-10718163 | Msa0007460:intron | 30.0% |
| !! | TGAAAGTGTTTACTGTGTTA+AGG | - | chr1_1:10718243-10718262 | Msa0007460:intron | 30.0% |
| !!! | GATACATTGACTTGTTTTCT+TGG | - | chr1_1:10718394-10718413 | Msa0007460:intron | 30.0% |
| AGGTAGACTTTAATGCATTT+AGG | - | chr1_1:10718627-10718646 | Msa0007460:intron | 30.0% | |
| CAATGAAAATTTACGCTCTT+TGG | - | chr1_1:10718654-10718673 | Msa0007460:intron | 30.0% | |
| ! | CAATTTTCTGATCGATTACT+AGG | - | chr1_1:10718723-10718742 | Msa0007460:intron | 30.0% |
| ! | TTACTAGGAGTAAAAAGTGT+TGG | - | chr1_1:10718738-10718757 | Msa0007460:intron | 30.0% |
| CGCTCAAAAATATTACAATG+AGG | + | chr1_1:10718964-10718983 | None:intergenic | 30.0% | |
| ATAGAGCTGCAATAAAAAAC+TGG | + | chr1_1:10719308-10719327 | None:intergenic | 30.0% | |
| ! | TTGCAGCTCTATTATTTTCT+AGG | - | chr1_1:10719316-10719335 | Msa0007460:intron | 30.0% |
| TGGTTAAAACAAGAAACCTT+TGG | - | chr1_1:10719553-10719572 | Msa0007460:intron | 30.0% | |
| TTAAAACAAGAAACCTTTGG+AGG | - | chr1_1:10719556-10719575 | Msa0007460:intron | 30.0% | |
| ! | CAATACGATTGCTTTCTTTT+GGG | - | chr1_1:10719613-10719632 | Msa0007460:intron | 30.0% |
| ATGTTAATAGGTCTCTACAA+GGG | - | chr1_1:10719708-10719727 | Msa0007460:intron | 30.0% | |
| ! | AGGTATATTTCCTTGTTTCA+AGG | + | chr1_1:10719774-10719793 | None:intergenic | 30.0% |
| !! | TTTTGATTACACTGTAACAG+GGG | - | chr1_1:10720154-10720173 | Msa0007460:intron | 30.0% |
| AGAATAATTCCATTTGATCC+AGG | + | chr1_1:10720476-10720495 | None:intergenic | 30.0% | |
| AGATTCATAAGAATGCTGTT+TGG | - | chr1_1:10720587-10720606 | Msa0007460:CDS | 30.0% | |
| !!! | AGAAATGATATTTTGACGTC+AGG | - | chr1_1:10720716-10720735 | Msa0007460:CDS | 30.0% |
| ! | TTTCTTGGTCTTTGTGATTC+TGG | + | chr1_1:10717021-10717040 | None:intergenic | 35.0% |
| ! | AAGACTTCAGAAAGCATAAC+AGG | + | chr1_1:10717149-10717168 | None:intergenic | 35.0% |
| !! | TGTTATGCTTTCTGAAGTCT+TGG | - | chr1_1:10717148-10717167 | Msa0007460:CDS | 35.0% |
| ! | TCTTTCGTTGATTGTACTCT+TGG | - | chr1_1:10717197-10717216 | Msa0007460:CDS | 35.0% |
| CAAAACAAGCCTAATCCAAA+CGG | - | chr1_1:10717377-10717396 | Msa0007460:CDS | 35.0% | |
| AAAACAAGCCTAATCCAAAC+GGG | - | chr1_1:10717378-10717397 | Msa0007460:CDS | 35.0% | |
| TAATCAGATTTCACCGTCTT+TGG | + | chr1_1:10717672-10717691 | None:intergenic | 35.0% | |
| CAGTTAAAGTTGAATCCATC+TGG | - | chr1_1:10717761-10717780 | Msa0007460:intron | 35.0% | |
| TTTCAGCTAGGAATCAAACT+CGG | + | chr1_1:10717792-10717811 | None:intergenic | 35.0% | |
| AGCCAAGAATTATTTCAGCT+AGG | + | chr1_1:10717804-10717823 | None:intergenic | 35.0% | |
| TTGGTTGAAGAGAAATAGAG+AGG | + | chr1_1:10717993-10718012 | None:intergenic | 35.0% | |
| CCAACAAAATACTTCAACTC+TGG | + | chr1_1:10718146-10718165 | None:intergenic | 35.0% | |
| !! | CCAGAGTTGAAGTATTTTGT+TGG | - | chr1_1:10718143-10718162 | Msa0007460:intron | 35.0% |
| !! | GTTGAAGTATTTTGTTGGGA+TGG | - | chr1_1:10718148-10718167 | Msa0007460:intron | 35.0% |
| ATCAAGATGCCATCAATAGA+CGG | + | chr1_1:10718326-10718345 | None:intergenic | 35.0% | |
| TTTGTCTAATCTTATGGTGC+TGG | - | chr1_1:10718451-10718470 | Msa0007460:CDS | 35.0% | |
| AATGCATTAAAGTCTACCTG+AGG | + | chr1_1:10718626-10718645 | None:intergenic | 35.0% | |
| GAAATAGCGATACATGTCTT+CGG | + | chr1_1:10718840-10718859 | None:intergenic | 35.0% | |
| ! | ATTTAGACAGAAGCACAAGT+CGG | + | chr1_1:10718890-10718909 | None:intergenic | 35.0% |
| ! | TTCCTATTAAACTGATGGAC+AGG | - | chr1_1:10719064-10719083 | Msa0007460:intron | 35.0% |
| ATTATGGGGAAGAGACTAAT+TGG | - | chr1_1:10719164-10719183 | Msa0007460:intron | 35.0% | |
| CTGCAATAAAAAACTGGAGA+AGG | + | chr1_1:10719302-10719321 | None:intergenic | 35.0% | |
| TGAATGCAAAGGGATAGTTA+CGG | + | chr1_1:10719443-10719462 | None:intergenic | 35.0% | |
| GAGTACGATTTGAATGCAAA+GGG | + | chr1_1:10719453-10719472 | None:intergenic | 35.0% | |
| CACAACTATGGTATAGTTGT+GGG | + | chr1_1:10719481-10719500 | None:intergenic | 35.0% | |
| ! | TAATAGCAGAAGCACAACTA+TGG | + | chr1_1:10719493-10719512 | None:intergenic | 35.0% |
| !! | GTTCTTGGTTTGTAAAGTCA+TGG | + | chr1_1:10719516-10719535 | None:intergenic | 35.0% |
| ! | GCAATACGATTGCTTTCTTT+TGG | - | chr1_1:10719612-10719631 | Msa0007460:intron | 35.0% |
| AGGTTTGGCATGATGTTAAT+AGG | - | chr1_1:10719696-10719715 | Msa0007460:intron | 35.0% | |
| GATGTTAATAGGTCTCTACA+AGG | - | chr1_1:10719707-10719726 | Msa0007460:intron | 35.0% | |
| TGTTAATAGGTCTCTACAAG+GGG | - | chr1_1:10719709-10719728 | Msa0007460:intron | 35.0% | |
| GATCTTTACTCCTTGAAACA+AGG | - | chr1_1:10719761-10719780 | Msa0007460:intron | 35.0% | |
| GAAAACATGTAGGTCAAGAA+TGG | + | chr1_1:10720045-10720064 | None:intergenic | 35.0% | |
| ! | TTCTTGACCTACATGTTTTC+TGG | - | chr1_1:10720045-10720064 | Msa0007460:intron | 35.0% |
| TCATATGCCAGAAAACATGT+AGG | + | chr1_1:10720055-10720074 | None:intergenic | 35.0% | |
| ! | ACAGGCCATAATGTTTTTCA+TGG | - | chr1_1:10720099-10720118 | Msa0007460:intron | 35.0% |
| TTTGATTACACTGTAACAGG+GGG | - | chr1_1:10720155-10720174 | Msa0007460:intron | 35.0% | |
| TTCTCAATGCTTGAAATACC+CGG | + | chr1_1:10720208-10720227 | None:intergenic | 35.0% | |
| TGTCATATCCTTTCACAGTT+TGG | - | chr1_1:10720310-10720329 | Msa0007460:intron | 35.0% | |
| AGAGTTGCAATAGTGATCTT+AGG | - | chr1_1:10720399-10720418 | Msa0007460:intron | 35.0% | |
| TTATGGTCCCAATGTTTCAT+CGG | - | chr1_1:10720668-10720687 | Msa0007460:CDS | 35.0% | |
| ! | TTTTCCACCGATGAAACATT+GGG | + | chr1_1:10720678-10720697 | None:intergenic | 35.0% |
| ! | TTTTTCCACCGATGAAACAT+TGG | + | chr1_1:10720679-10720698 | None:intergenic | 35.0% |
| GTTACTACCACAGTGAGTTT+AGG | - | chr1_1:10716860-10716879 | Msa0007460:three_prime_UTR | 40.0% | |
| ! | GTGGTGAATGAGTTTAGGTT+TGG | + | chr1_1:10716949-10716968 | None:intergenic | 40.0% |
| AGGATGTGGTGAATGAGTTT+AGG | + | chr1_1:10716954-10716973 | None:intergenic | 40.0% | |
| GATTTGAAGAAGGAGAAGAG+AGG | + | chr1_1:10716974-10716993 | None:intergenic | 40.0% | |
| !! | AGGGTTCTGAGATTTGAAGA+AGG | + | chr1_1:10716984-10717003 | None:intergenic | 40.0% |
| ! | CTTTGTGATTCTGGAAGAAG+CGG | + | chr1_1:10717012-10717031 | None:intergenic | 40.0% |
| AAAGCTCGATTATTGTCTCC+TGG | + | chr1_1:10717100-10717119 | None:intergenic | 40.0% | |
| AAATTCTCTTAGGTCCCGTT+TGG | + | chr1_1:10717395-10717414 | None:intergenic | 40.0% | |
| AGTGTGAATGCGTAGAACAT+AGG | + | chr1_1:10717611-10717630 | None:intergenic | 40.0% | |
| TAGTAATTTGGGGATTGGGT+GGG | + | chr1_1:10717843-10717862 | None:intergenic | 40.0% | |
| ACCCAATCCCCAAATTACTA+GGG | - | chr1_1:10717843-10717862 | Msa0007460:intron | 40.0% | |
| TCTTAATCCCCCAGTTTCTA+GGG | + | chr1_1:10717870-10717889 | None:intergenic | 40.0% | |
| ! | GTATTTTGTTGGGATGGATG+TGG | - | chr1_1:10718154-10718173 | Msa0007460:intron | 40.0% |
| !!! | TCAGTTCAGTTTTGGACGAT+AGG | - | chr1_1:10718210-10718229 | Msa0007460:intron | 40.0% |
| !!! | CAGTTCAGTTTTGGACGATA+GGG | - | chr1_1:10718211-10718230 | Msa0007460:intron | 40.0% |
| CACAGTAAACACTTTCACAC+TGG | + | chr1_1:10718240-10718259 | None:intergenic | 40.0% | |
| TTAGAGGATCCGTCTATTGA+TGG | - | chr1_1:10718314-10718333 | Msa0007460:intron | 40.0% | |
| ! | GTCTATTGATGGCATCTTGA+TGG | - | chr1_1:10718325-10718344 | Msa0007460:intron | 40.0% |
| ! | TCTTATGGTGCTGGAATTTG+TGG | - | chr1_1:10718460-10718479 | Msa0007460:CDS | 40.0% |
| ! | TTTAGACAGAAGCACAAGTC+GGG | + | chr1_1:10718889-10718908 | None:intergenic | 40.0% |
| TGTATTACTCTGCAGTAAGC+AGG | + | chr1_1:10719034-10719053 | None:intergenic | 40.0% | |
| ATTGTCCAAGCTCGTTTAGA+AGG | - | chr1_1:10719205-10719224 | Msa0007460:intron | 40.0% | |
| CGAGTACGATTTGAATGCAA+AGG | + | chr1_1:10719454-10719473 | None:intergenic | 40.0% | |
| GCACAACTATGGTATAGTTG+TGG | + | chr1_1:10719482-10719501 | None:intergenic | 40.0% | |
| ACACACTCTTCTTCTGTTCA+TGG | - | chr1_1:10719582-10719601 | Msa0007460:intron | 40.0% | |
| ! | AGTATCATGAGCTTTGACAC+AGG | - | chr1_1:10720081-10720100 | Msa0007460:intron | 40.0% |
| GTTGGATAAAAACAGCTACC+CGG | - | chr1_1:10720186-10720205 | Msa0007460:intron | 40.0% | |
| TTGGATAAAAACAGCTACCC+GGG | - | chr1_1:10720187-10720206 | Msa0007460:intron | 40.0% | |
| TCTCAATGCTTGAAATACCC+GGG | + | chr1_1:10720207-10720226 | None:intergenic | 40.0% | |
| TGATGAACTGAAGACTCTTG+AGG | - | chr1_1:10720238-10720257 | Msa0007460:intron | 40.0% | |
| !!! | TGTTTTGACTGTCTTGCATC+TGG | - | chr1_1:10720275-10720294 | Msa0007460:intron | 40.0% |
| CATATCCTTTCACAGTTTGG+AGG | - | chr1_1:10720313-10720332 | Msa0007460:intron | 40.0% | |
| GAAATGAAGACATGGGAGAA+GGG | - | chr1_1:10720375-10720394 | Msa0007460:intron | 40.0% | |
| AAATGAAGACATGGGAGAAG+GGG | - | chr1_1:10720376-10720395 | Msa0007460:intron | 40.0% | |
| TGGATAAGACAAGTAATGCC+TGG | - | chr1_1:10720455-10720474 | Msa0007460:CDS | 40.0% | |
| CAAGTAATGCCTGGATCAAA+TGG | - | chr1_1:10720464-10720483 | Msa0007460:CDS | 40.0% | |
| TCTTCTTCTGACGGAGTAAT+CGG | + | chr1_1:10720509-10720528 | None:intergenic | 40.0% | |
| AAGTTCTCCTCTTCTTCTGA+CGG | + | chr1_1:10720518-10720537 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGTGCAAAGCTCA+GGG | - | chr1_1:10720547-10720566 | Msa0007460:CDS | 40.0% |
| TCATCGGTGGAAAAATGTCA+AGG | - | chr1_1:10720684-10720703 | Msa0007460:CDS | 40.0% | |
| TACCACAGTGAGTTTAGGTC+TGG | - | chr1_1:10716865-10716884 | Msa0007460:three_prime_UTR | 45.0% | |
| TTCCAGACCTAAACTCACTG+TGG | + | chr1_1:10716870-10716889 | None:intergenic | 45.0% | |
| AAGAAGGAGAAGAGAGGATG+TGG | + | chr1_1:10716968-10716987 | None:intergenic | 45.0% | |
| !!! | AAGTGCTGCTTCGGTTTTCT+TGG | + | chr1_1:10717036-10717055 | None:intergenic | 45.0% |
| TTCCGACAAAGAACTCAACC+AGG | - | chr1_1:10717079-10717098 | Msa0007460:three_prime_UTR | 45.0% | |
| CTCCTGGTTGAGTTCTTTGT+CGG | + | chr1_1:10717084-10717103 | None:intergenic | 45.0% | |
| TCTTAGGTCCCGTTTGGATT+AGG | + | chr1_1:10717389-10717408 | None:intergenic | 45.0% | |
| TCAAACTCGGATACTCCAGA+TGG | + | chr1_1:10717779-10717798 | None:intergenic | 45.0% | |
| AGTAATTTGGGGATTGGGTG+GGG | + | chr1_1:10717842-10717861 | None:intergenic | 45.0% | |
| CTAGTAATTTGGGGATTGGG+TGG | + | chr1_1:10717844-10717863 | None:intergenic | 45.0% | |
| CACCCAATCCCCAAATTACT+AGG | - | chr1_1:10717842-10717861 | Msa0007460:intron | 45.0% | |
| CCCCTAGTAATTTGGGGATT+GGG | + | chr1_1:10717847-10717866 | None:intergenic | 45.0% | |
| CCCAATCCCCAAATTACTAG+GGG | - | chr1_1:10717844-10717863 | Msa0007460:intron | 45.0% | |
| ! | TCTAGGGCCCCTAGTAATTT+GGG | + | chr1_1:10717854-10717873 | None:intergenic | 45.0% |
| !! | TTCTAGGGCCCCTAGTAATT+TGG | + | chr1_1:10717855-10717874 | None:intergenic | 45.0% |
| GTCTTAATCCCCCAGTTTCT+AGG | + | chr1_1:10717871-10717890 | None:intergenic | 45.0% | |
| ! | ATCCCGCATCAGTTCAGTTT+TGG | - | chr1_1:10718202-10718221 | Msa0007460:intron | 45.0% |
| GTCCAAAACTGAACTGATGC+GGG | + | chr1_1:10718207-10718226 | None:intergenic | 45.0% | |
| CGTCCAAAACTGAACTGATG+CGG | + | chr1_1:10718208-10718227 | None:intergenic | 45.0% | |
| CACATCAAGTCTGTGCTTAG+AGG | - | chr1_1:10718275-10718294 | Msa0007460:intron | 45.0% | |
| CAAGTCTGTGCTTAGAGGAA+CGG | - | chr1_1:10718280-10718299 | Msa0007460:intron | 45.0% | |
| AAGTCTGTGCTTAGAGGAAC+GGG | - | chr1_1:10718281-10718300 | Msa0007460:intron | 45.0% | |
| TAGGTGGATGATCCTCAAAG+AGG | - | chr1_1:10718557-10718576 | Msa0007460:CDS | 45.0% | |
| AGCACACTGAATCCTCTTTG+AGG | + | chr1_1:10718572-10718591 | None:intergenic | 45.0% | |
| CAAAGAGGATTCAGTGTGCT+TGG | - | chr1_1:10718572-10718591 | Msa0007460:CDS | 45.0% | |
| AGGATCCATGCGCATATCAA+GGG | + | chr1_1:10718606-10718625 | None:intergenic | 45.0% | |
| TACATGTCTTCGGTTGGAGT+TGG | + | chr1_1:10718830-10718849 | None:intergenic | 45.0% | |
| TAGCGATACATGTCTTCGGT+TGG | + | chr1_1:10718836-10718855 | None:intergenic | 45.0% | |
| GGCCTGTCCATCAGTTTAAT+AGG | + | chr1_1:10719069-10719088 | None:intergenic | 45.0% | |
| !! | CTTTAAGGCTTGCCTGTCAT+AGG | + | chr1_1:10719090-10719109 | None:intergenic | 45.0% |
| TTCTTGGCCAGATACTGAAG+TGG | - | chr1_1:10719126-10719145 | Msa0007460:intron | 45.0% | |
| TCTTGGCCAGATACTGAAGT+GGG | - | chr1_1:10719127-10719146 | Msa0007460:intron | 45.0% | |
| GCCGTATCCTAAGGGATTAT+GGG | - | chr1_1:10719149-10719168 | Msa0007460:intron | 45.0% | |
| CCCCATAATCCCTTAGGATA+CGG | + | chr1_1:10719153-10719172 | None:intergenic | 45.0% | |
| CCGTATCCTAAGGGATTATG+GGG | - | chr1_1:10719150-10719169 | Msa0007460:intron | 45.0% | |
| TCTCTTCCCCATAATCCCTT+AGG | + | chr1_1:10719159-10719178 | None:intergenic | 45.0% | |
| ATCCACCTTCTAAACGAGCT+TGG | + | chr1_1:10719213-10719232 | None:intergenic | 45.0% | |
| TGACTCCTGGAATGAAAGGT+AGG | - | chr1_1:10719272-10719291 | Msa0007460:intron | 45.0% | |
| GATGACCTACCTTTCATTCC+AGG | + | chr1_1:10719280-10719299 | None:intergenic | 45.0% | |
| ! | AAGAGTGTGTCTTCCTCCAA+AGG | + | chr1_1:10719572-10719591 | None:intergenic | 45.0% |
| TCATCGGGACATACATTGCA+TGG | + | chr1_1:10719668-10719687 | None:intergenic | 45.0% | |
| CAAACCTCTGATGCATCATC+GGG | + | chr1_1:10719683-10719702 | None:intergenic | 45.0% | |
| CCAAACCTCTGATGCATCAT+CGG | + | chr1_1:10719684-10719703 | None:intergenic | 45.0% | |
| TTTGACTGTCTTGCATCTGG+TGG | - | chr1_1:10720278-10720297 | Msa0007460:intron | 45.0% | |
| TCTGTCCTCCAAACTGTGAA+AGG | + | chr1_1:10720321-10720340 | None:intergenic | 45.0% | |
| GGAAATGAAGACATGGGAGA+AGG | - | chr1_1:10720374-10720393 | Msa0007460:intron | 45.0% | |
| GATTACTCCGTCAGAAGAAG+AGG | - | chr1_1:10720508-10720527 | Msa0007460:CDS | 45.0% | |
| GCTTTGCACTTCTACTTCTG+CGG | + | chr1_1:10720544-10720563 | None:intergenic | 45.0% | |
| ! | GAAGTAGAAGTGCAAAGCTC+AGG | - | chr1_1:10720546-10720565 | Msa0007460:CDS | 45.0% |
| ! | TGTGATTCTGGAAGAAGCGG+TGG | + | chr1_1:10717009-10717028 | None:intergenic | 50.0% |
| ACGCGTTCTTCTCTTCTCCT+TGG | + | chr1_1:10717060-10717079 | None:intergenic | 50.0% | |
| !! | GATTGTACTCTTGGTGCTGC+TGG | - | chr1_1:10717206-10717225 | Msa0007460:CDS | 50.0% |
| GCCCCTAGTAATTTGGGGAT+TGG | + | chr1_1:10717848-10717867 | None:intergenic | 50.0% | |
| CTAGGGCCCCTAGTAATTTG+GGG | + | chr1_1:10717853-10717872 | None:intergenic | 50.0% | |
| TTACTAGGGGCCCTAGAAAC+TGG | - | chr1_1:10717857-10717876 | Msa0007460:intron | 50.0% | |
| TACTAGGGGCCCTAGAAACT+GGG | - | chr1_1:10717858-10717877 | Msa0007460:intron | 50.0% | |
| ! | TGATGGCATCTTGATGGACC+TGG | - | chr1_1:10718331-10718350 | Msa0007460:intron | 50.0% |
| ! | GATGGCATCTTGATGGACCT+GGG | - | chr1_1:10718332-10718351 | Msa0007460:intron | 50.0% |
| ! | GGATTCAGTGTGCTTGGTGA+TGG | - | chr1_1:10718578-10718597 | Msa0007460:intron | 50.0% |
| GGATCCATGCGCATATCAAG+GGG | + | chr1_1:10718605-10718624 | None:intergenic | 50.0% | |
| GAGGATCCATGCGCATATCA+AGG | + | chr1_1:10718607-10718626 | None:intergenic | 50.0% | |
| TGATATGCGCATGGATCCTC+AGG | - | chr1_1:10718607-10718626 | Msa0007460:intron | 50.0% | |
| ATACGGCCCACTTCAGTATC+TGG | + | chr1_1:10719136-10719155 | None:intergenic | 50.0% | |
| TGAAGTGGGCCGTATCCTAA+GGG | - | chr1_1:10719141-10719160 | Msa0007460:intron | 50.0% | |
| GGCCGTATCCTAAGGGATTA+TGG | - | chr1_1:10719148-10719167 | Msa0007460:intron | 50.0% | |
| GTCCAAGCTCGTTTAGAAGG+TGG | - | chr1_1:10719208-10719227 | Msa0007460:intron | 50.0% | |
| GAGATCCAGCAAGTCAGTAG+TGG | + | chr1_1:10719242-10719261 | None:intergenic | 50.0% | |
| CGTGTGACTCCTGGAATGAA+AGG | - | chr1_1:10719268-10719287 | Msa0007460:intron | 50.0% | |
| AAAGGGATAGTTACGGCGAG+GGG | + | chr1_1:10719436-10719455 | None:intergenic | 50.0% | |
| CAAAGGGATAGTTACGGCGA+GGG | + | chr1_1:10719437-10719456 | None:intergenic | 50.0% | |
| ATGTCCCGATGATGCATCAG+AGG | - | chr1_1:10719676-10719695 | Msa0007460:intron | 50.0% | |
| CCGATGATGCATCAGAGGTT+TGG | - | chr1_1:10719681-10719700 | Msa0007460:intron | 50.0% | |
| ACTGTAACAGGGGGAAGACA+GGG | - | chr1_1:10720164-10720183 | Msa0007460:intron | 50.0% | |
| ACTGTCTTGCATCTGGTGGA+AGG | - | chr1_1:10720282-10720301 | Msa0007460:intron | 50.0% | |
| TGGTCCCAATGTTTCATCGG+TGG | - | chr1_1:10720671-10720690 | Msa0007460:CDS | 50.0% | |
| TCTGGAAGAAGCGGTGGTGA+GGG | + | chr1_1:10717003-10717022 | None:intergenic | 55.0% | |
| ! | TTCTGGAAGAAGCGGTGGTG+AGG | + | chr1_1:10717004-10717023 | None:intergenic | 55.0% |
| AACCGAAGCAGCACTTGCCA+AGG | - | chr1_1:10717040-10717059 | Msa0007460:three_prime_UTR | 55.0% | |
| !! | CTCCTTGGCAAGTGCTGCTT+CGG | + | chr1_1:10717045-10717064 | None:intergenic | 55.0% |
| ACTAGGGGCCCTAGAAACTG+GGG | - | chr1_1:10717859-10717878 | Msa0007460:intron | 55.0% | |
| CCTGCATAGATGACATGCCC+AGG | + | chr1_1:10718352-10718371 | None:intergenic | 55.0% | |
| CCTGGGCATGTCATCTATGC+AGG | - | chr1_1:10718349-10718368 | Msa0007460:intron | 55.0% | |
| TGGACCCCTTGATATGCGCA+TGG | - | chr1_1:10718598-10718617 | Msa0007460:intron | 55.0% | |
| ! | CTGATGGACAGGCCTATGAC+AGG | - | chr1_1:10719075-10719094 | Msa0007460:CDS | 55.0% |
| CTGAAGTGGGCCGTATCCTA+AGG | - | chr1_1:10719140-10719159 | Msa0007460:intron | 55.0% | |
| !! | GCACTCCACTACTGACTTGC+TGG | - | chr1_1:10719234-10719253 | Msa0007460:intron | 55.0% |
| CTCATTCAGCGTGTGACTCC+TGG | - | chr1_1:10719259-10719278 | Msa0007460:intron | 55.0% | |
| AAGGGATAGTTACGGCGAGG+GGG | + | chr1_1:10719435-10719454 | None:intergenic | 55.0% | |
| GCAAAGGGATAGTTACGGCG+AGG | + | chr1_1:10719438-10719457 | None:intergenic | 55.0% | |
| CACTGTAACAGGGGGAAGAC+AGG | - | chr1_1:10720163-10720182 | Msa0007460:intron | 55.0% | |
| TAACAGGGGGAAGACAGGGT+TGG | - | chr1_1:10720168-10720187 | Msa0007460:intron | 55.0% | |
| CTAGGGGCCCTAGAAACTGG+GGG | - | chr1_1:10717860-10717879 | Msa0007460:intron | 60.0% | |
| TGGGATGGATGTGGACCCTG+TGG | - | chr1_1:10718163-10718182 | Msa0007460:intron | 60.0% | |
| GGGATGGATGTGGACCCTGT+GGG | - | chr1_1:10718164-10718183 | Msa0007460:intron | 60.0% | |
| GGATGGATGTGGACCCTGTG+GGG | - | chr1_1:10718165-10718184 | Msa0007460:intron | 60.0% | |
| TGTGCTTAGAGGAACGGGCG+AGG | - | chr1_1:10718286-10718305 | Msa0007460:intron | 60.0% | |
| !! | AACGGGCGAGGAGCACTTAG+AGG | - | chr1_1:10718298-10718317 | Msa0007460:intron | 60.0% |
| AGGGATAGTTACGGCGAGGG+GGG | + | chr1_1:10719434-10719453 | None:intergenic | 60.0% | |
| ATAGTTACGGCGAGGGGGGG+GGG | + | chr1_1:10719430-10719449 | None:intergenic | 65.0% | |
| GATAGTTACGGCGAGGGGGG+GGG | + | chr1_1:10719431-10719450 | None:intergenic | 65.0% | |
| GGATAGTTACGGCGAGGGGG+GGG | + | chr1_1:10719432-10719451 | None:intergenic | 65.0% | |
| GGGATAGTTACGGCGAGGGG+GGG | + | chr1_1:10719433-10719452 | None:intergenic | 65.0% | |
| GGACCCTGTGGGGCGTGACA+CGG | - | chr1_1:10718175-10718194 | Msa0007460:intron | 70.0% | |
| GAGCCGTGTCACGCCCCACA+GGG | + | chr1_1:10718181-10718200 | None:intergenic | 70.0% | |
| TGAGCCGTGTCACGCCCCAC+AGG | + | chr1_1:10718182-10718201 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10716831 | 10720862 | 10716831 | ID=Msa0007460;Name=Msa0007460 |
| chr1_1 | mRNA | 10716831 | 10720862 | 10716831 | ID=Msa0007460-mRNA-1;Parent=Msa0007460;Name=Msa0007460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=75|1|1|1|0.8|0.66|6|249|417 |
| chr1_1 | exon | 10716831 | 10716884 | 10716831 | ID=Msa0007460-mRNA-1:exon:3913;Parent=Msa0007460-mRNA-1 |
| chr1_1 | exon | 10716912 | 10717519 | 10716912 | ID=Msa0007460-mRNA-1:exon:3912;Parent=Msa0007460-mRNA-1 |
| chr1_1 | exon | 10718404 | 10718596 | 10718404 | ID=Msa0007460-mRNA-1:exon:3911;Parent=Msa0007460-mRNA-1 |
| chr1_1 | exon | 10719065 | 10719133 | 10719065 | ID=Msa0007460-mRNA-1:exon:3910;Parent=Msa0007460-mRNA-1 |
| chr1_1 | exon | 10719323 | 10719565 | 10719323 | ID=Msa0007460-mRNA-1:exon:3909;Parent=Msa0007460-mRNA-1 |
| chr1_1 | exon | 10720452 | 10720862 | 10720452 | ID=Msa0007460-mRNA-1:exon:3908;Parent=Msa0007460-mRNA-1 |
| chr1_1 | five_prime_UTR | 10720788 | 10720862 | 10720788 | ID=Msa0007460-mRNA-1:five_prime_utr;Parent=Msa0007460-mRNA-1 |
| chr1_1 | CDS | 10720452 | 10720787 | 10720452 | ID=Msa0007460-mRNA-1:cds;Parent=Msa0007460-mRNA-1 |
| chr1_1 | CDS | 10719323 | 10719565 | 10719323 | ID=Msa0007460-mRNA-1:cds;Parent=Msa0007460-mRNA-1 |
| chr1_1 | CDS | 10719065 | 10719133 | 10719065 | ID=Msa0007460-mRNA-1:cds;Parent=Msa0007460-mRNA-1 |
| chr1_1 | CDS | 10718404 | 10718596 | 10718404 | ID=Msa0007460-mRNA-1:cds;Parent=Msa0007460-mRNA-1 |
| chr1_1 | CDS | 10717107 | 10717519 | 10717107 | ID=Msa0007460-mRNA-1:cds;Parent=Msa0007460-mRNA-1 |
| chr1_1 | three_prime_UTR | 10716912 | 10717106 | 10716912 | ID=Msa0007460-mRNA-1:three_prime_utr;Parent=Msa0007460-mRNA-1 |
| chr1_1 | three_prime_UTR | 10716831 | 10716884 | 10716831 | ID=Msa0007460-mRNA-1:three_prime_utr;Parent=Msa0007460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
