Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008650 | Msa0160200 | 0.868052 | 8.696049e-66 | -8.615850e-47 |
| Msa0008650 | Msa0160240 | 0.845320 | 4.371673e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008650 | MtrunA17_Chr1g0146691 | 99.399 | 499 | 3 | 0 | 1 | 499 | 1 | 499 | 0.0 | 994 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008650 | AT5G05310.2 | 64.113 | 496 | 163 | 3 | 2 | 491 | 3 | 489 | 0.0 | 626 |
| Msa0008650 | AT5G05310.7 | 64.185 | 497 | 161 | 4 | 2 | 491 | 3 | 489 | 0.0 | 625 |
| Msa0008650 | AT5G05310.3 | 63.984 | 497 | 162 | 4 | 2 | 491 | 3 | 489 | 0.0 | 623 |
| Msa0008650 | AT5G05310.5 | 63.445 | 476 | 159 | 3 | 2 | 471 | 3 | 469 | 0.0 | 589 |
| Msa0008650 | AT5G05310.1 | 63.235 | 476 | 160 | 3 | 2 | 471 | 3 | 469 | 0.0 | 586 |
| Msa0008650 | AT5G05310.8 | 59.274 | 496 | 148 | 4 | 2 | 491 | 3 | 450 | 0.0 | 557 |
| Msa0008650 | AT5G05310.9 | 64.116 | 379 | 122 | 4 | 124 | 491 | 5 | 380 | 2.08e-165 | 473 |
| Msa0008650 | AT5G05310.4 | 63.231 | 359 | 118 | 4 | 124 | 471 | 5 | 360 | 3.72e-151 | 436 |
| Msa0008650 | AT5G05310.6 | 61.475 | 366 | 124 | 4 | 2 | 360 | 3 | 358 | 1.34e-146 | 426 |
Find 123 sgRNAs with CRISPR-Local
Find 592 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCAACTGCTGCCCTTTA+TGG | 0.078663 | 1_1:-12497494 | Msa0008650:CDS |
| CAGTCAGGTTCAAGATTATT+TGG | 0.124112 | 1_1:-12502457 | Msa0008650:CDS |
| AAGGGATGCTTGAAAGAATT+TGG | 0.147679 | 1_1:+12496996 | None:intergenic |
| AATCTACCTGAATTGTTTAT+AGG | 0.160972 | 1_1:-12504975 | Msa0008650:CDS |
| TCCGTATAGGATTGTTTCTT+TGG | 0.190623 | 1_1:-12502748 | Msa0008650:CDS |
| GGGCGCATTCTTACTGTTGC+TGG | 0.213977 | 1_1:-12499665 | Msa0008650:CDS |
| CTCTTCATTCTTCTATTTCC+AGG | 0.225663 | 1_1:-12501200 | Msa0008650:intron |
| TCAAGATTATTTGGGTTTAT+TGG | 0.226892 | 1_1:-12502448 | Msa0008650:CDS |
| CAGTTGATGGGCTTCCGTTT+TGG | 0.259434 | 1_1:+12497507 | None:intergenic |
| TTTGTTTGCTGCTTTGTTGA+TGG | 0.265472 | 1_1:-12502273 | Msa0008650:CDS |
| TCATAGTGTTCTTTATTCTA+TGG | 0.281562 | 1_1:-12503017 | Msa0008650:CDS |
| TGCATATATCATTGTTCATC+TGG | 0.287046 | 1_1:-12501237 | Msa0008650:CDS |
| CTCTAGCTGTTTGGCCAGAT+TGG | 0.290929 | 1_1:-12499589 | Msa0008650:CDS |
| ATCCCTTCTGAGCGGGTAAT+TGG | 0.292897 | 1_1:-12496980 | Msa0008650:three_prime_UTR |
| TCACTAAAGCGGATGACTTT+GGG | 0.296466 | 1_1:+12501320 | None:intergenic |
| AGGACTGAACACACTCTAAA+AGG | 0.313410 | 1_1:-12501346 | Msa0008650:CDS |
| GTACAGTAAGTGAACTATAA+TGG | 0.326681 | 1_1:-12497109 | Msa0008650:exon |
| GCATAATGTTTGGCCCATAT+TGG | 0.327547 | 1_1:-12501296 | Msa0008650:CDS |
| AAGCCAGAGTCCTTCCAATA+TGG | 0.328705 | 1_1:+12501282 | None:intergenic |
| CGCATACCGGAAGGCCATAA+AGG | 0.339702 | 1_1:+12497480 | None:intergenic |
| TAATAACATAAATTGATATA+TGG | 0.352892 | 1_1:-12496929 | Msa0008650:three_prime_UTR |
| GGCGCATTCTTACTGTTGCT+GGG | 0.355123 | 1_1:-12499664 | Msa0008650:CDS |
| TTATTGTCTTACGATCAAAT+TGG | 0.361396 | 1_1:+12502966 | None:intergenic |
| TGCTGCCCTTTATGGCCTTC+CGG | 0.372438 | 1_1:-12497486 | Msa0008650:intron |
| CTATGGCACTATTCATCATC+TGG | 0.381282 | 1_1:-12503000 | Msa0008650:CDS |
| CTTGGAGATGCTGCAGCAGC+TGG | 0.386009 | 1_1:-12497554 | Msa0008650:CDS |
| CCGTATAGGATTGTTTCTTT+GGG | 0.388493 | 1_1:-12502747 | Msa0008650:intron |
| AGGGATGCTTGAAAGAATTT+GGG | 0.390176 | 1_1:+12496997 | None:intergenic |
| TACAGTAAGTGAACTATAAT+GGG | 0.391461 | 1_1:-12497108 | Msa0008650:exon |
| AAGAGGAACTGTCTCCCATT+AGG | 0.391486 | 1_1:-12502199 | Msa0008650:intron |
| TATTGGACAACTAACCTTAA+CGG | 0.392572 | 1_1:-12500491 | Msa0008650:intron |
| AGTCAGGTTCAAGATTATTT+GGG | 0.394883 | 1_1:-12502456 | Msa0008650:CDS |
| CCATAAAGGGCAGCAGTTGA+TGG | 0.395489 | 1_1:+12497494 | None:intergenic |
| ACAAATAGAAGTTCTCTTCC+AGG | 0.396229 | 1_1:+12498158 | None:intergenic |
| TTCACTAAAGCGGATGACTT+TGG | 0.397463 | 1_1:+12501319 | None:intergenic |
| CCCAAAGAAACAATCCTATA+CGG | 0.404528 | 1_1:+12502747 | None:intergenic |
| ATTTAGCAGCTCTAGCTGTT+TGG | 0.406828 | 1_1:-12499598 | Msa0008650:CDS |
| GCCACCCTTGGACAACTTTG+TGG | 0.408789 | 1_1:-12502418 | Msa0008650:CDS |
| TAATTACACTTTCTTCAACT+TGG | 0.416019 | 1_1:-12502580 | Msa0008650:CDS |
| GTCTTGCATCATCAGTTAGT+TGG | 0.417522 | 1_1:-12502799 | Msa0008650:CDS |
| CTTTAGTGAAGCATAATGTT+TGG | 0.419464 | 1_1:-12501306 | Msa0008650:CDS |
| AATTACACTTTCTTCAACTT+GGG | 0.424688 | 1_1:-12502579 | Msa0008650:CDS |
| ACCTCGAAAGATGCGAAACT+TGG | 0.444622 | 1_1:-12502833 | Msa0008650:CDS |
| GGAATGTATAAAATGCTATT+CGG | 0.449545 | 1_1:-12497533 | Msa0008650:CDS |
| ATTGGCGCCGGTGCCACCCT+TGG | 0.450925 | 1_1:-12502430 | Msa0008650:CDS |
| GAATAAAGGAATAACCTAAT+GGG | 0.452607 | 1_1:+12502185 | None:intergenic |
| AGCACAGTTACTAGCTCTCT+TGG | 0.453833 | 1_1:-12500565 | Msa0008650:CDS |
| TCTTGCATCATCAGTTAGTT+GGG | 0.458816 | 1_1:-12502798 | Msa0008650:CDS |
| GATGCGAAACTTGGTGATCA+AGG | 0.462636 | 1_1:-12502824 | Msa0008650:CDS |
| AGCCAGAGTCCTTCCAATAT+GGG | 0.465635 | 1_1:+12501283 | None:intergenic |
| TTCTTCCTCTTGCCTCCGAT+CGG | 0.467553 | 1_1:-12505885 | None:intergenic |
| ACCAAGTTTCGCATCTTTCG+AGG | 0.468234 | 1_1:+12502832 | None:intergenic |
| CGCGATGGGGAGGTCTCGAT+TGG | 0.470185 | 1_1:-12505850 | Msa0008650:exon |
| GGCCCATATTGGAAGGACTC+TGG | 0.472781 | 1_1:-12501285 | Msa0008650:CDS |
| AATGAACCTATAAACAATTC+AGG | 0.473015 | 1_1:+12504969 | None:intergenic |
| AGCTGTTTGGCCAGATTGGA+TGG | 0.486134 | 1_1:-12499585 | Msa0008650:CDS |
| GCTCGTGTCCGTGTTCGTTA+CGG | 0.487030 | 1_1:-12505823 | Msa0008650:CDS |
| TATACCAGGTTTGTTTGCTG+TGG | 0.489345 | 1_1:-12497198 | Msa0008650:intron |
| ACATATGTCGTTACAAGGCC+TGG | 0.492097 | 1_1:-12498176 | Msa0008650:CDS |
| CACTTTCTTCAACTTGGGCA+AGG | 0.496172 | 1_1:-12502574 | Msa0008650:CDS |
| CATAAATTGATATATGGTGC+TGG | 0.496750 | 1_1:-12496923 | Msa0008650:three_prime_UTR |
| ATGCTATTCGGTACCCAAAA+CGG | 0.497652 | 1_1:-12497521 | Msa0008650:CDS |
| ATGAGGCTAGTGAGATTGAC+AGG | 0.498584 | 1_1:-12501366 | Msa0008650:CDS |
| ATAGCCACCACCATCCAATC+TGG | 0.501086 | 1_1:+12499575 | None:intergenic |
| TCTATTTGTTGTTGTTTCAG+AGG | 0.501374 | 1_1:-12498144 | Msa0008650:CDS |
| GCATACCGGAAGGCCATAAA+GGG | 0.503514 | 1_1:+12497481 | None:intergenic |
| TGTGGATCACTGTTTGCCAC+TGG | 0.503643 | 1_1:-12502400 | Msa0008650:CDS |
| CATAAAGGGCAGCAGTTGAT+GGG | 0.504756 | 1_1:+12497495 | None:intergenic |
| CCTTCTGAGCGGGTAATTGG+AGG | 0.505143 | 1_1:-12496977 | Msa0008650:three_prime_UTR |
| GACGAAGGTGCAATTTCGTT+AGG | 0.505288 | 1_1:-12505005 | Msa0008650:CDS |
| TTCAAGCATCCCTTCTGAGC+GGG | 0.511161 | 1_1:-12496987 | Msa0008650:three_prime_UTR |
| GGCAAGGGTAATTGACGTAA+TGG | 0.511302 | 1_1:-12502558 | Msa0008650:CDS |
| TGCTTTGTTGATGGAACTTG+CGG | 0.514337 | 1_1:-12502264 | Msa0008650:CDS |
| AAGTTGTCCAAGGGTGGCAC+CGG | 0.518873 | 1_1:+12502423 | None:intergenic |
| CCTCCAATTACCCGCTCAGA+AGG | 0.520610 | 1_1:+12496977 | None:intergenic |
| ATCACTGTTTGCCACTGGAA+TGG | 0.526777 | 1_1:-12502395 | Msa0008650:CDS |
| AAATTTAAGAAGCCAACAAA+AGG | 0.535746 | 1_1:+12499617 | None:intergenic |
| CAGGCAAGCTCAACTTTCAA+AGG | 0.538613 | 1_1:-12497149 | Msa0008650:CDS |
| GATGTGCTGGTTCAAAGACT+TGG | 0.538899 | 1_1:-12497572 | Msa0008650:CDS |
| TTATTTGGGTTTATTGGCGC+CGG | 0.542986 | 1_1:-12502442 | Msa0008650:CDS |
| AACATTATGCTTCACTAAAG+CGG | 0.545555 | 1_1:+12501309 | None:intergenic |
| CCGTCACTGAGAAGAAGGAA+TGG | 0.546100 | 1_1:+12505772 | None:intergenic |
| TGATTCCAACCCTGAAAATG+AGG | 0.548025 | 1_1:-12501383 | Msa0008650:CDS |
| GGAAAACAGAAACGCGCGAT+GGG | 0.549401 | 1_1:-12505864 | Msa0008650:exon |
| CGATACATCTCATGTTGAAG+AGG | 0.554678 | 1_1:-12502216 | Msa0008650:CDS |
| AATGTTTGGCCCATATTGGA+AGG | 0.555421 | 1_1:-12501292 | Msa0008650:CDS |
| CACTAAAGCGGATGACTTTG+GGG | 0.556815 | 1_1:+12501321 | None:intergenic |
| CAGAGATATAAAACCATCCA+TGG | 0.557084 | 1_1:+12502771 | None:intergenic |
| TTGGCCAGATTGGATGGTGG+TGG | 0.558352 | 1_1:-12499579 | Msa0008650:CDS |
| TTGTTACATATGTCGTTACA+AGG | 0.561769 | 1_1:-12498181 | Msa0008650:CDS |
| ACTTTCTTCAACTTGGGCAA+GGG | 0.563550 | 1_1:-12502573 | Msa0008650:CDS |
| GAAAAGACGAGTGATGTAAA+CGG | 0.567397 | 1_1:+12504924 | None:intergenic |
| GCAGATATGCATAGATGTGC+TGG | 0.569585 | 1_1:-12497585 | Msa0008650:intron |
| GTGATCCACAAAGTTGTCCA+AGG | 0.583511 | 1_1:+12502413 | None:intergenic |
| AAGAGAGCTAGTAACTGTGC+TGG | 0.585958 | 1_1:+12500567 | None:intergenic |
| ATTGCACCTTCGTCACGCAA+AGG | 0.586515 | 1_1:+12505014 | None:intergenic |
| AACAGAAACGCGCGATGGGG+AGG | 0.587965 | 1_1:-12505860 | Msa0008650:exon |
| TTAGTTGGGATAACCATGGA+TGG | 0.588899 | 1_1:-12502784 | Msa0008650:CDS |
| GAAGGAATGGAGAAGAGCAG+AGG | 0.593303 | 1_1:+12505785 | None:intergenic |
| CGGGTGCACCGTAACGAACA+CGG | 0.599027 | 1_1:+12505815 | None:intergenic |
| TATTTGTGAGACACTGAGAA+AGG | 0.600732 | 1_1:-12499555 | Msa0008650:intron |
| CTTGCGGCTCAGACATCAAG+AGG | 0.600948 | 1_1:-12502248 | Msa0008650:CDS |
| AGTGAACTATAATGGGTGAT+CGG | 0.607885 | 1_1:-12497101 | Msa0008650:three_prime_UTR |
| TTCTGAGATAAAAGCTAACA+CGG | 0.609978 | 1_1:-12497028 | Msa0008650:three_prime_UTR |
| GCGCATTCTTACTGTTGCTG+GGG | 0.617741 | 1_1:-12499663 | Msa0008650:CDS |
| ATCTTTCGAGGTCAAAGCAG+TGG | 0.623754 | 1_1:+12502844 | None:intergenic |
| TGAACAATGATATATGCAAG+AGG | 0.623962 | 1_1:+12501242 | None:intergenic |
| CTCCAATTACCCGCTCAGAA+GGG | 0.628936 | 1_1:+12496978 | None:intergenic |
| TGTAAACGGCGTGGCAATGA+CGG | 0.635110 | 1_1:+12504938 | None:intergenic |
| TCCACAAAGTTGTCCAAGGG+TGG | 0.638478 | 1_1:+12502417 | None:intergenic |
| TTGAAAGTTGAGCTTGCCTG+CGG | 0.645029 | 1_1:+12497152 | None:intergenic |
| CGGAAAACAGAAACGCGCGA+TGG | 0.646490 | 1_1:-12505865 | Msa0008650:exon |
| GAAGAGCAGAGGATTCATGC+GGG | 0.657083 | 1_1:+12505796 | None:intergenic |
| TGATCCACAAAGTTGTCCAA+GGG | 0.658076 | 1_1:+12502414 | None:intergenic |
| GACGAGTGATGTAAACGGCG+TGG | 0.670991 | 1_1:+12504929 | None:intergenic |
| TCAGTTAGTTGGGATAACCA+TGG | 0.671089 | 1_1:-12502788 | Msa0008650:CDS |
| AGAAGAGCAGAGGATTCATG+CGG | 0.677530 | 1_1:+12505795 | None:intergenic |
| GAAAACAGAAACGCGCGATG+GGG | 0.698449 | 1_1:-12505863 | Msa0008650:exon |
| TGTTTGGCCAGATTGGATGG+TGG | 0.699492 | 1_1:-12499582 | Msa0008650:CDS |
| TTTCAAGCATCCCTTCTGAG+CGG | 0.704429 | 1_1:-12496988 | Msa0008650:three_prime_UTR |
| ACCAACAAAAGCCATTCCAG+TGG | 0.708073 | 1_1:+12502384 | None:intergenic |
| TTGCGGCTCAGACATCAAGA+GGG | 0.737553 | 1_1:-12502247 | Msa0008650:CDS |
| AATTGACGTAATGGACAACG+AGG | 0.788942 | 1_1:-12502549 | Msa0008650:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAAAATCAACATTTT+AGG | + | chr1_1:12497146-12497165 | None:intergenic | 10.0% |
| !! | GGTAAAAAAATAATTAATTA+CGG | + | chr1_1:12497206-12497225 | None:intergenic | 10.0% |
| !! | ACAATAATATTATATAAAGA+GGG | - | chr1_1:12497516-12497535 | Msa0008650:CDS | 10.0% |
| !!! | TTTATATTTTTCAAAAAAGA+AGG | - | chr1_1:12502907-12502926 | Msa0008650:intron | 10.0% |
| !! | TAATATTAATGTATATATCT+AGG | - | chr1_1:12503359-12503378 | Msa0008650:intron | 10.0% |
| !!! | GATTTTATTTACTTAATATT+AGG | + | chr1_1:12504047-12504066 | None:intergenic | 10.0% |
| !! | TAATAACATAAATTGATATA+TGG | - | chr1_1:12505868-12505887 | Msa0008650:exon | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGC+TGG | + | chr1_1:12501241-12501260 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501242-12501261 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501242-12501261 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501242-12501261 | None:intergenic | 100.0% |
| !!! | ATTCTTATATTTGTTGAAAA+AGG | + | chr1_1:12497251-12497270 | None:intergenic | 15.0% |
| !! | AAAATATTACAAAACTAAGA+AGG | + | chr1_1:12497470-12497489 | None:intergenic | 15.0% |
| !! | GACAATAATATTATATAAAG+AGG | - | chr1_1:12497515-12497534 | Msa0008650:CDS | 15.0% |
| !! | CAATAATATTATATAAAGAG+GGG | - | chr1_1:12497517-12497536 | Msa0008650:CDS | 15.0% |
| !! | ACTAGGTATATATTTAAATT+TGG | - | chr1_1:12497544-12497563 | Msa0008650:CDS | 15.0% |
| !! | CTAGGTATATATTTAAATTT+GGG | - | chr1_1:12497545-12497564 | Msa0008650:CDS | 15.0% |
| !!! | ATTTTGGACATAAATAAATT+CGG | - | chr1_1:12498747-12498766 | Msa0008650:intron | 15.0% |
| !! | TTTAAGAAATGAAAATCAAA+AGG | - | chr1_1:12499315-12499334 | Msa0008650:intron | 15.0% |
| !! | TTCAAAATATTACATCTAAA+TGG | + | chr1_1:12499528-12499547 | None:intergenic | 15.0% |
| !!! | TTTGATTTTCTCTTATTTAT+TGG | + | chr1_1:12499584-12499603 | None:intergenic | 15.0% |
| !! | ATTTGAAAAACGATATATAA+TGG | - | chr1_1:12499663-12499682 | Msa0008650:CDS | 15.0% |
| !! | ATAAATAATTATGTATTGTG+TGG | + | chr1_1:12501376-12501395 | None:intergenic | 15.0% |
| !!! | TGTAGAATTTGAAATATAAA+GGG | + | chr1_1:12502958-12502977 | None:intergenic | 15.0% |
| !!! | ATGTAGAATTTGAAATATAA+AGG | + | chr1_1:12502959-12502978 | None:intergenic | 15.0% |
| !! | ACAAGATAAAGAAAAATTAA+TGG | + | chr1_1:12503108-12503127 | None:intergenic | 15.0% |
| !! | ATTTCAATTACTAAAGTTTA+GGG | - | chr1_1:12503479-12503498 | Msa0008650:intron | 15.0% |
| !! | TTGAATAGATATCTATAAAA+GGG | + | chr1_1:12503520-12503539 | None:intergenic | 15.0% |
| !! | ATTGAATAGATATCTATAAA+AGG | + | chr1_1:12503521-12503540 | None:intergenic | 15.0% |
| !!! | TTTGATTTTCTTTACAATTT+TGG | - | chr1_1:12504131-12504150 | Msa0008650:intron | 15.0% |
| !!! | TTGATTTTCTTTACAATTTT+GGG | - | chr1_1:12504132-12504151 | Msa0008650:intron | 15.0% |
| !! | TATAATTGTAATAATAAGTG+TGG | - | chr1_1:12504252-12504271 | Msa0008650:intron | 15.0% |
| !! | GTGATATATAATAATGATTT+AGG | - | chr1_1:12504336-12504355 | Msa0008650:intron | 15.0% |
| !!! | ATTTTCATTTTGCAAATTAA+AGG | - | chr1_1:12505016-12505035 | Msa0008650:CDS | 15.0% |
| !!! | TTTTCATTTTGCAAATTAAA+GGG | - | chr1_1:12505017-12505036 | Msa0008650:CDS | 15.0% |
| !!! | TTTTAATATGCTACATTTTT+AGG | - | chr1_1:12505148-12505167 | Msa0008650:intron | 15.0% |
| !!! | TTTAATATGCTACATTTTTA+GGG | - | chr1_1:12505149-12505168 | Msa0008650:intron | 15.0% |
| !!! | ATCCAGAAATTTTAATAAGT+GGG | - | chr1_1:12497048-12497067 | Msa0008650:three_prime_UTR | 20.0% |
| !!! | AATTGAAAAGGTTAGTTAAA+CGG | + | chr1_1:12497725-12497744 | None:intergenic | 20.0% |
| !! | ACTAAATTCCTATGAATTAA+AGG | - | chr1_1:12498718-12498737 | Msa0008650:intron | 20.0% |
| !! | CTAAATTCCTATGAATTAAA+GGG | - | chr1_1:12498719-12498738 | Msa0008650:intron | 20.0% |
| !! | TTAATTCTTCAGGATATTAA+GGG | + | chr1_1:12499360-12499379 | None:intergenic | 20.0% |
| !!! | ATTTTGATACTTAATTCTTC+AGG | + | chr1_1:12499370-12499389 | None:intergenic | 20.0% |
| !! | AATACATGTGAAATTTGATA+CGG | - | chr1_1:12499478-12499497 | Msa0008650:intron | 20.0% |
| !! | AAATATTACATCTAAATGGT+TGG | + | chr1_1:12499524-12499543 | None:intergenic | 20.0% |
| !!! | TAGATGTAATATTTTGAACT+AGG | - | chr1_1:12499530-12499549 | Msa0008650:intron | 20.0% |
| !!! | GCATAGTTTTTGTTTTAATT+TGG | - | chr1_1:12500284-12500303 | Msa0008650:intron | 20.0% |
| !! | AACTATGAAGAAAAGAATAA+AGG | + | chr1_1:12500629-12500648 | None:intergenic | 20.0% |
| !!! | CTTCAAATAAAAATGAGTTT+TGG | + | chr1_1:12500686-12500705 | None:intergenic | 20.0% |
| !!! | CAAAACTCATTTTTATTTGA+AGG | - | chr1_1:12500684-12500703 | Msa0008650:intron | 20.0% |
| !! | AGTCAGAAAAATGTTAATTA+TGG | - | chr1_1:12501282-12501301 | Msa0008650:CDS | 20.0% |
| !! | GTCAGAAAAATGTTAATTAT+GGG | - | chr1_1:12501283-12501302 | Msa0008650:CDS | 20.0% |
| !!! | ATTGCTGTTTTTATTCTTAT+TGG | - | chr1_1:12502289-12502308 | Msa0008650:intron | 20.0% |
| !! | TAACACTTGAAAAAGTTAAA+AGG | - | chr1_1:12502420-12502439 | Msa0008650:CDS | 20.0% |
| !!! | TAAGTACACAATTTGATAAT+TGG | - | chr1_1:12502537-12502556 | Msa0008650:intron | 20.0% |
| !!! | ATTTGAAATATAAAGGGTTT+CGG | + | chr1_1:12502952-12502971 | None:intergenic | 20.0% |
| !! | AGAATATTACTTATTGGAAA+TGG | + | chr1_1:12502985-12503004 | None:intergenic | 20.0% |
| !! | GATTTCAATTACTAAAGTTT+AGG | - | chr1_1:12503478-12503497 | Msa0008650:intron | 20.0% |
| !!! | GTCTATATATATTAGTCTTT+TGG | + | chr1_1:12503995-12504014 | None:intergenic | 20.0% |
| !!! | GATTTAGGAATTTGTTTTTT+TGG | - | chr1_1:12504351-12504370 | Msa0008650:intron | 20.0% |
| !! | GACTAATACTTTCAATTTAA+GGG | + | chr1_1:12504828-12504847 | None:intergenic | 20.0% |
| !! | TGACTAATACTTTCAATTTA+AGG | + | chr1_1:12504829-12504848 | None:intergenic | 20.0% |
| !!! | ATAGTTATTCCTCATTATTT+TGG | - | chr1_1:12505468-12505487 | Msa0008650:intron | 20.0% |
| !!! | GATCCAGAAATTTTAATAAG+TGG | - | chr1_1:12497047-12497066 | Msa0008650:three_prime_UTR | 25.0% |
| !!! | TCCAGAAATTTTAATAAGTG+GGG | - | chr1_1:12497049-12497068 | Msa0008650:three_prime_UTR | 25.0% |
| ! | TTAAAAATACAATACACGTG+TGG | - | chr1_1:12497568-12497587 | Msa0008650:CDS | 25.0% |
| !! | ATTGAAAAGGTTAGTTAAAC+GGG | + | chr1_1:12497724-12497743 | None:intergenic | 25.0% |
| ! | TCTGCAATACAAAATTGAAA+AGG | + | chr1_1:12497737-12497756 | None:intergenic | 25.0% |
| ! | AATCTACCTGAATTGTTTAT+AGG | - | chr1_1:12497822-12497841 | Msa0008650:intron | 25.0% |
| ! | AATGAACCTATAAACAATTC+AGG | + | chr1_1:12497831-12497850 | None:intergenic | 25.0% |
| ! | GAAATGTGATAGAATAGAAT+TGG | + | chr1_1:12497926-12497945 | None:intergenic | 25.0% |
| ! | GAGAAAATAGAAGTTAAAAC+TGG | - | chr1_1:12498024-12498043 | Msa0008650:intron | 25.0% |
| ! | ACATATATAGTCACATTCAA+TGG | + | chr1_1:12498129-12498148 | None:intergenic | 25.0% |
| ! | ATGATTTCACTCAATAATAG+AGG | + | chr1_1:12498439-12498458 | None:intergenic | 25.0% |
| ! | TTTCCACAAAGACATTAATA+AGG | - | chr1_1:12498642-12498661 | Msa0008650:intron | 25.0% |
| ! | TTTCCTTATTAATGTCTTTG+TGG | + | chr1_1:12498648-12498667 | None:intergenic | 25.0% |
| !! | AAACTAGTTTGTAGATTTCA+AGG | - | chr1_1:12498665-12498684 | Msa0008650:intron | 25.0% |
| ! | TTCGTTAACAATCTTAACTA+GGG | - | chr1_1:12498688-12498707 | Msa0008650:intron | 25.0% |
| ! | ATTAACTCCCTTTAATTCAT+AGG | + | chr1_1:12498729-12498748 | None:intergenic | 25.0% |
| !! | GAATTAAAGGGAGTTAATTT+TGG | - | chr1_1:12498731-12498750 | Msa0008650:intron | 25.0% |
| ! | CAATGATATAGTACATCATA+AGG | - | chr1_1:12498880-12498899 | Msa0008650:intron | 25.0% |
| !! | CAAATATTGAAGTATTTGAC+TGG | - | chr1_1:12498973-12498992 | Msa0008650:intron | 25.0% |
| !! | AAATACAAAGTACCTAGAAA+TGG | + | chr1_1:12499012-12499031 | None:intergenic | 25.0% |
| !! | AATGATTTTGCAAAGTAAAC+TGG | + | chr1_1:12499053-12499072 | None:intergenic | 25.0% |
| !!! | GTTAGTTTTGCTTGTTAATA+AGG | + | chr1_1:12499289-12499308 | None:intergenic | 25.0% |
| ! | CTTAATTCTTCAGGATATTA+AGG | + | chr1_1:12499361-12499380 | None:intergenic | 25.0% |
| ! | TCATAGTGTTCTTTATTCTA+TGG | - | chr1_1:12499780-12499799 | Msa0008650:intron | 25.0% |
| ! | TTATTGTCTTACGATCAAAT+TGG | + | chr1_1:12499834-12499853 | None:intergenic | 25.0% |
| ! | TCGTAAGACAATAATATATC+TGG | - | chr1_1:12499840-12499859 | Msa0008650:intron | 25.0% |
| ! | GTATTAAGATTGCGTTAAAT+TGG | - | chr1_1:12499905-12499924 | Msa0008650:intron | 25.0% |
| !!! | TGATTTTATTCTCCACTTTT+TGG | - | chr1_1:12500085-12500104 | Msa0008650:intron | 25.0% |
| ! | TATACATTGATACCAAAAAG+TGG | + | chr1_1:12500100-12500119 | None:intergenic | 25.0% |
| !!! | TTATATCACAGAAGTATCTT+TGG | + | chr1_1:12500154-12500173 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTTTGTGTGCGA+AGG | - | chr1_1:12500179-12500198 | Msa0008650:intron | 25.0% |
| ! | TAATTACACTTTCTTCAACT+TGG | - | chr1_1:12500217-12500236 | Msa0008650:intron | 25.0% |
| ! | AATTACACTTTCTTCAACTT+GGG | - | chr1_1:12500218-12500237 | Msa0008650:intron | 25.0% |
| !!! | TGTTTTAATTTGGCTTGTTT+TGG | - | chr1_1:12500294-12500313 | Msa0008650:intron | 25.0% |
| !!! | GTTTTAATTTGGCTTGTTTT+GGG | - | chr1_1:12500295-12500314 | Msa0008650:intron | 25.0% |
| !! | TCAAGATTATTTGGGTTTAT+TGG | - | chr1_1:12500349-12500368 | Msa0008650:intron | 25.0% |
| ! | GAATAAAGGAATAACCTAAT+GGG | + | chr1_1:12500615-12500634 | None:intergenic | 25.0% |
| ! | AGAATAAAGGAATAACCTAA+TGG | + | chr1_1:12500616-12500635 | None:intergenic | 25.0% |
| !! | TACATGCTGTAAATTTTTCT+TGG | + | chr1_1:12500723-12500742 | None:intergenic | 25.0% |
| ! | AATCTCTGCAAATTTATCAA+TGG | - | chr1_1:12500937-12500956 | Msa0008650:intron | 25.0% |
| ! | ATCTCTGCAAATTTATCAAT+GGG | - | chr1_1:12500938-12500957 | Msa0008650:intron | 25.0% |
| ! | CAAATTTATCAATGGGATAT+AGG | - | chr1_1:12500945-12500964 | Msa0008650:intron | 25.0% |
| ! | TCTGTGATTAGAAATAAAAG+CGG | + | chr1_1:12501112-12501131 | None:intergenic | 25.0% |
| ! | AATTACTTGCACACTATTAT+AGG | + | chr1_1:12501217-12501236 | None:intergenic | 25.0% |
| ! | AATGTTAATTATGGGTATCA+TGG | - | chr1_1:12501291-12501310 | Msa0008650:CDS | 25.0% |
| ! | ATAAAACCAAGCAAATGATA+CGG | + | chr1_1:12501788-12501807 | None:intergenic | 25.0% |
| !!! | CACTTGTTAAACTACAATTT+TGG | - | chr1_1:12501917-12501936 | Msa0008650:intron | 25.0% |
| !!! | TACAATTTTGGTACTTAACT+AGG | - | chr1_1:12501929-12501948 | Msa0008650:intron | 25.0% |
| ! | AAATCAAAGGATGTAATCAA+GGG | + | chr1_1:12501981-12502000 | None:intergenic | 25.0% |
| ! | TAAATCAAAGGATGTAATCA+AGG | + | chr1_1:12501982-12502001 | None:intergenic | 25.0% |
| ! | ACTTGATCACAATAAATCAA+AGG | + | chr1_1:12501994-12502013 | None:intergenic | 25.0% |
| ! | ATGAAAGAAATCAAATGCAT+CGG | + | chr1_1:12502042-12502061 | None:intergenic | 25.0% |
| ! | CATCTTAAAAACACATATCA+TGG | + | chr1_1:12502129-12502148 | None:intergenic | 25.0% |
| ! | TTTGTGCTAACATGATATAT+AGG | - | chr1_1:12502467-12502486 | Msa0008650:intron | 25.0% |
| ! | GGCAAAATCTAATTATCAAT+TGG | + | chr1_1:12502601-12502620 | None:intergenic | 25.0% |
| !!! | ATTGTTATTTCATACACTTG+AGG | - | chr1_1:12502871-12502890 | Msa0008650:intron | 25.0% |
| !!! | TTGTTATTTCATACACTTGA+GGG | - | chr1_1:12502872-12502891 | Msa0008650:intron | 25.0% |
| !! | TTTGAAATATAAAGGGTTTC+GGG | + | chr1_1:12502951-12502970 | None:intergenic | 25.0% |
| ! | TTGCTGAGAATATTACTTAT+TGG | + | chr1_1:12502991-12503010 | None:intergenic | 25.0% |
| ! | AAATAAGAAAAACTACCACA+AGG | + | chr1_1:12503033-12503052 | None:intergenic | 25.0% |
| ! | GATATATGAAGTGATCATAT+TGG | + | chr1_1:12503082-12503101 | None:intergenic | 25.0% |
| !! | AATTTTTCTTTATCTTGTGC+AGG | - | chr1_1:12503110-12503129 | Msa0008650:intron | 25.0% |
| !! | ATTTTTCTTTATCTTGTGCA+GGG | - | chr1_1:12503111-12503130 | Msa0008650:intron | 25.0% |
| ! | AAATTTAAGAAGCCAACAAA+AGG | + | chr1_1:12503183-12503202 | None:intergenic | 25.0% |
| ! | TAGTAATTGAAATCAACAAC+AGG | + | chr1_1:12503472-12503491 | None:intergenic | 25.0% |
| ! | AGACTAATATATATAGACCA+AGG | - | chr1_1:12503997-12504016 | Msa0008650:intron | 25.0% |
| ! | TTAATAGAATTTATGAGCCT+TGG | + | chr1_1:12504017-12504036 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAATGGAAAGAA+CGG | - | chr1_1:12504174-12504193 | Msa0008650:intron | 25.0% |
| !! | ATCTACTTTGTTTAACCTTT+AGG | + | chr1_1:12504735-12504754 | None:intergenic | 25.0% |
| ! | TTAAATTGTGGTTGTATACT+CGG | + | chr1_1:12504866-12504885 | None:intergenic | 25.0% |
| ! | AGTATACAACCACAATTTAA+AGG | - | chr1_1:12504866-12504885 | Msa0008650:intron | 25.0% |
| ! | AACTTAGAACCTTTAAATTG+TGG | + | chr1_1:12504878-12504897 | None:intergenic | 25.0% |
| ! | TGTAGCATATTAAAATGTTG+TGG | + | chr1_1:12505143-12505162 | None:intergenic | 25.0% |
| ! | GGAATGTATAAAATGCTATT+CGG | - | chr1_1:12505264-12505283 | Msa0008650:intron | 25.0% |
| !! | ATAATCACAGCATTCTTTTT+GGG | - | chr1_1:12505622-12505641 | Msa0008650:intron | 25.0% |
| ! | TACAGTAAGTGAACTATAAT+GGG | - | chr1_1:12505689-12505708 | Msa0008650:intron | 25.0% |
| ACCCCACTTATTAAAATTTC+TGG | + | chr1_1:12497053-12497072 | None:intergenic | 30.0% | |
| !! | AATATTTGTCCATTTCTAGC+AGG | - | chr1_1:12497165-12497184 | Msa0008650:CDS | 30.0% |
| !! | ATATTTGTCCATTTCTAGCA+GGG | - | chr1_1:12497166-12497185 | Msa0008650:CDS | 30.0% |
| TATTTATACCCTGCTAGAAA+TGG | + | chr1_1:12497177-12497196 | None:intergenic | 30.0% | |
| ! | TTGAAAAGGTTAGTTAAACG+GGG | + | chr1_1:12497723-12497742 | None:intergenic | 30.0% |
| !!! | ACCTTGTTTTTAGAGAGATT+GGG | + | chr1_1:12497903-12497922 | None:intergenic | 30.0% |
| ! | CCATTTTCTCAAATTAGTAC+TGG | + | chr1_1:12498157-12498176 | None:intergenic | 30.0% |
| CCAGTACTAATTTGAGAAAA+TGG | - | chr1_1:12498154-12498173 | Msa0008650:CDS | 30.0% | |
| TTGAGTGTAATCATATGTGT+CGG | - | chr1_1:12498196-12498215 | Msa0008650:intron | 30.0% | |
| TCGTATCATAGAGTAATGAT+AGG | - | chr1_1:12498381-12498400 | Msa0008650:intron | 30.0% | |
| TGAGTGAAATCATATCATGT+AGG | - | chr1_1:12498446-12498465 | Msa0008650:intron | 30.0% | |
| TCAATAAAAGAGTGAGTGAT+GGG | - | chr1_1:12498516-12498535 | Msa0008650:intron | 30.0% | |
| TTTCAATACAAGCAGACATT+AGG | + | chr1_1:12498574-12498593 | None:intergenic | 30.0% | |
| ! | TATTGTTATTGTACGCAACT+TGG | - | chr1_1:12498614-12498633 | Msa0008650:intron | 30.0% |
| ATTAATGTCTTTGTGGAAAG+TGG | + | chr1_1:12498641-12498660 | None:intergenic | 30.0% | |
| GTTCGTTAACAATCTTAACT+AGG | - | chr1_1:12498687-12498706 | Msa0008650:intron | 30.0% | |
| ! | AATAAATTCGGTGACTTAGT+TGG | - | chr1_1:12498759-12498778 | Msa0008650:intron | 30.0% |
| TAGTTGCTTAATTCACTTTG+TGG | - | chr1_1:12498843-12498862 | Msa0008650:intron | 30.0% | |
| TACATCATAAGGTACGATAA+AGG | - | chr1_1:12498891-12498910 | Msa0008650:intron | 30.0% | |
| ! | TCATAGACATGTTCTTTTCA+TGG | + | chr1_1:12498921-12498940 | None:intergenic | 30.0% |
| ATGAATATAACAGTCACACT+TGG | - | chr1_1:12498937-12498956 | Msa0008650:intron | 30.0% | |
| TTCATAGAATGTCCATTTCT+AGG | - | chr1_1:12498997-12499016 | Msa0008650:intron | 30.0% | |
| ! | TGTATTTGTTGCAGAAAACT+TGG | - | chr1_1:12499025-12499044 | Msa0008650:intron | 30.0% |
| ! | GTATTTGTTGCAGAAAACTT+GGG | - | chr1_1:12499026-12499045 | Msa0008650:intron | 30.0% |
| ! | TATTTGTTGCAGAAAACTTG+GGG | - | chr1_1:12499027-12499046 | Msa0008650:intron | 30.0% |
| GAGAAGATAAAATGCTAGTT+AGG | - | chr1_1:12499159-12499178 | Msa0008650:intron | 30.0% | |
| ! | TTTTGTTGCAAGTTCAAGAA+TGG | - | chr1_1:12499390-12499409 | Msa0008650:intron | 30.0% |
| AAGAATGGAAACAAAATACC+AGG | - | chr1_1:12499405-12499424 | Msa0008650:intron | 30.0% | |
| !! | ATGCAGTTTTATGAACTAAG+AGG | + | chr1_1:12499443-12499462 | None:intergenic | 30.0% |
| ! | ATTTTCTTTTCCTACTCCTA+GGG | - | chr1_1:12499928-12499947 | Msa0008650:intron | 30.0% |
| ! | TTTTATATCTCTGTCCGTAT+AGG | - | chr1_1:12500036-12500055 | Msa0008650:intron | 30.0% |
| AGTCAGGTTCAAGATTATTT+GGG | - | chr1_1:12500341-12500360 | Msa0008650:intron | 30.0% | |
| AAGCAAGAAATGGTTGTATA+GGG | + | chr1_1:12500457-12500476 | None:intergenic | 30.0% | |
| AAATAGAGATGCATTTGAGA+TGG | - | chr1_1:12500659-12500678 | Msa0008650:intron | 30.0% | |
| ! | ATGCTGTAAATTTTTCTTGG+AGG | + | chr1_1:12500720-12500739 | None:intergenic | 30.0% |
| AATTTACAGCATGTAGAACT+AGG | - | chr1_1:12500728-12500747 | Msa0008650:intron | 30.0% | |
| TGTAGGATAGTTATCTATGT+AGG | + | chr1_1:12500775-12500794 | None:intergenic | 30.0% | |
| AGATTGTAACAAAAGCAACT+TGG | - | chr1_1:12500841-12500860 | Msa0008650:intron | 30.0% | |
| ATCAAGATACAGAACAAAGA+TGG | - | chr1_1:12500983-12501002 | Msa0008650:intron | 30.0% | |
| CTGTGATTAGAAATAAAAGC+GGG | + | chr1_1:12501111-12501130 | None:intergenic | 30.0% | |
| CGTAGCGTATCATATTTAAT+TGG | - | chr1_1:12501188-12501207 | Msa0008650:intron | 30.0% | |
| AACATTATGCTTCACTAAAG+CGG | + | chr1_1:12501491-12501510 | None:intergenic | 30.0% | |
| CTTTAGTGAAGCATAATGTT+TGG | - | chr1_1:12501491-12501510 | Msa0008650:intron | 30.0% | |
| TGAACAATGATATATGCAAG+AGG | + | chr1_1:12501558-12501577 | None:intergenic | 30.0% | |
| TGCATATATCATTGTTCATC+TGG | - | chr1_1:12501560-12501579 | Msa0008650:intron | 30.0% | |
| TTTGTCCTATAAGACATCTT+TGG | - | chr1_1:12501631-12501650 | Msa0008650:intron | 30.0% | |
| GATTACCAAAGATGTCTTAT+AGG | + | chr1_1:12501639-12501658 | None:intergenic | 30.0% | |
| TAAAACCAAGCAAATGATAC+GGG | + | chr1_1:12501787-12501806 | None:intergenic | 30.0% | |
| AATCAAAGGATGTAATCAAG+GGG | + | chr1_1:12501980-12501999 | None:intergenic | 30.0% | |
| AGAAAAGTTCTGTTTGTCTT+TGG | - | chr1_1:12502074-12502093 | Msa0008650:intron | 30.0% | |
| TATTGGACAACTAACCTTAA+CGG | - | chr1_1:12502306-12502325 | Msa0008650:intron | 30.0% | |
| !! | TTTTGAAAAGCTTACCGTTA+AGG | + | chr1_1:12502323-12502342 | None:intergenic | 30.0% |
| ! | AAAAAATGACCTTTTCTGCT+TGG | - | chr1_1:12502339-12502358 | Msa0008650:intron | 30.0% |
| !!! | TTTGGACATTCTTTTAGAGT+TGG | - | chr1_1:12502363-12502382 | Msa0008650:intron | 30.0% |
| !!! | TTGGACATTCTTTTAGAGTT+GGG | - | chr1_1:12502364-12502383 | Msa0008650:intron | 30.0% |
| AGTTATTAACCAAAACCTGT+CGG | + | chr1_1:12502505-12502524 | None:intergenic | 30.0% | |
| GTAAACGAACTGCTATAATA+AGG | - | chr1_1:12502572-12502591 | Msa0008650:CDS | 30.0% | |
| ATTAATGTTACCCATCTGAA+AGG | - | chr1_1:12502801-12502820 | Msa0008650:CDS | 30.0% | |
| TGTATTTCAACCTTTCAGAT+GGG | + | chr1_1:12502814-12502833 | None:intergenic | 30.0% | |
| ATGTATTTCAACCTTTCAGA+TGG | + | chr1_1:12502815-12502834 | None:intergenic | 30.0% | |
| AGTAACAAAATGTATCCTTG+TGG | - | chr1_1:12503015-12503034 | Msa0008650:CDS | 30.0% | |
| ! | TTTTTCTTTATCTTGTGCAG+GGG | - | chr1_1:12503112-12503131 | Msa0008650:intron | 30.0% |
| ATATCTAGGTTCAATGCTAT+AGG | - | chr1_1:12503373-12503392 | Msa0008650:intron | 30.0% | |
| TATATACCAATTAGGGAACA+GGG | + | chr1_1:12503845-12503864 | None:intergenic | 30.0% | |
| ATATATACCAATTAGGGAAC+AGG | + | chr1_1:12503846-12503865 | None:intergenic | 30.0% | |
| GTTCCCTAATTGGTATATAT+CGG | - | chr1_1:12503846-12503865 | Msa0008650:intron | 30.0% | |
| TTCCCTAATTGGTATATATC+GGG | - | chr1_1:12503847-12503866 | Msa0008650:intron | 30.0% | |
| AACCCGATATATACCAATTA+GGG | + | chr1_1:12503852-12503871 | None:intergenic | 30.0% | |
| AAACCCGATATATACCAATT+AGG | + | chr1_1:12503853-12503872 | None:intergenic | 30.0% | |
| TAATTGGTATATATCGGGTT+TGG | - | chr1_1:12503852-12503871 | Msa0008650:intron | 30.0% | |
| ! | GTTCTTTCCATTCAACTTTT+TGG | + | chr1_1:12504175-12504194 | None:intergenic | 30.0% |
| TAATACTTCCCTATAAGCTA+TGG | + | chr1_1:12504286-12504305 | None:intergenic | 30.0% | |
| TTCAGCATATGTTTCTTTCT+TGG | - | chr1_1:12504410-12504429 | Msa0008650:intron | 30.0% | |
| CATAAGTCTGTGTGTAATAA+AGG | - | chr1_1:12504477-12504496 | Msa0008650:intron | 30.0% | |
| !! | TTCATGTTCTAAAATGTTGC+AGG | - | chr1_1:12504593-12504612 | Msa0008650:intron | 30.0% |
| TTGTTACATATGTCGTTACA+AGG | - | chr1_1:12504616-12504635 | Msa0008650:intron | 30.0% | |
| !! | TCTATTTGTTGTTGTTTCAG+AGG | - | chr1_1:12504653-12504672 | Msa0008650:intron | 30.0% |
| GAAAGCTCAAACAAAAATGA+TGG | + | chr1_1:12504705-12504724 | None:intergenic | 30.0% | |
| ! | ACTTTGTTTAACCTTTAGGA+CGG | + | chr1_1:12504731-12504750 | None:intergenic | 30.0% |
| AAAGTAGATGTTGTAGATCT+TGG | - | chr1_1:12504746-12504765 | Msa0008650:intron | 30.0% | |
| AAGTAGATGTTGTAGATCTT+GGG | - | chr1_1:12504747-12504766 | Msa0008650:intron | 30.0% | |
| ! | CCATTTTACAAATTCATTCG+TGG | + | chr1_1:12504796-12504815 | None:intergenic | 30.0% |
| CCACGAATGAATTTGTAAAA+TGG | - | chr1_1:12504793-12504812 | Msa0008650:intron | 30.0% | |
| !!! | TAAAGGTTCTAAGTTTTCCT+CGG | - | chr1_1:12504883-12504902 | Msa0008650:intron | 30.0% |
| GCAATATGTAGTTCTTTCAT+TGG | - | chr1_1:12504927-12504946 | Msa0008650:CDS | 30.0% | |
| ! | AGCCATGTACTATTTTCATT+TGG | - | chr1_1:12505095-12505114 | Msa0008650:intron | 30.0% |
| ! | GCCATGTACTATTTTCATTT+GGG | - | chr1_1:12505096-12505115 | Msa0008650:intron | 30.0% |
| TCCCAAATGAAAATAGTACA+TGG | + | chr1_1:12505100-12505119 | None:intergenic | 30.0% | |
| ! | TCTTTTTACTGCTTTATACC+AGG | - | chr1_1:12505585-12505604 | Msa0008650:intron | 30.0% |
| ! | GATAATCACAGCATTCTTTT+TGG | - | chr1_1:12505621-12505640 | Msa0008650:intron | 30.0% |
| GTACAGTAAGTGAACTATAA+TGG | - | chr1_1:12505688-12505707 | Msa0008650:intron | 30.0% | |
| !! | TTCTGAGATAAAAGCTAACA+CGG | - | chr1_1:12505769-12505788 | Msa0008650:intron | 30.0% |
| CATAAATTGATATATGGTGC+TGG | - | chr1_1:12505874-12505893 | Msa0008650:five_prime_UTR | 30.0% | |
| !! | ACGATATGCTCTGAGATAAT+TGG | - | chr1_1:12497307-12497326 | Msa0008650:intron | 35.0% |
| ATATAAAGAGGGGTCAAACT+AGG | - | chr1_1:12497527-12497546 | Msa0008650:CDS | 35.0% | |
| AAAATACAATACACGTGTGG+AGG | - | chr1_1:12497571-12497590 | Msa0008650:CDS | 35.0% | |
| GAAAAGACGAGTGATGTAAA+CGG | + | chr1_1:12497876-12497895 | None:intergenic | 35.0% | |
| !!! | CCTTGTTTTTAGAGAGATTG+GGG | + | chr1_1:12497902-12497921 | None:intergenic | 35.0% |
| !!! | GACCTTGTTTTTAGAGAGAT+TGG | + | chr1_1:12497904-12497923 | None:intergenic | 35.0% |
| GTGTTAGTATCAGACAAATG+AGG | - | chr1_1:12498066-12498085 | Msa0008650:intron | 35.0% | |
| TTAGTGGAAGTGAGAATTAG+AGG | - | chr1_1:12498103-12498122 | Msa0008650:intron | 35.0% | |
| GGTCCCACAATTATGAAAAT+GGG | + | chr1_1:12498492-12498511 | None:intergenic | 35.0% | |
| ! | ACTCACTCTTTTATTGACGT+GGG | + | chr1_1:12498513-12498532 | None:intergenic | 35.0% |
| GTCAATAAAAGAGTGAGTGA+TGG | - | chr1_1:12498515-12498534 | Msa0008650:intron | 35.0% | |
| TCGATTAGACATCTCATTTG+TGG | - | chr1_1:12498806-12498825 | Msa0008650:intron | 35.0% | |
| AAGCAACTAACATAGCACTT+TGG | + | chr1_1:12498832-12498851 | None:intergenic | 35.0% | |
| TGCTTAATTCACTTTGTGGA+AGG | - | chr1_1:12498847-12498866 | Msa0008650:intron | 35.0% | |
| !!! | ATGATGCCTTTTGAAATTCC+AGG | - | chr1_1:12499721-12499740 | Msa0008650:intron | 35.0% |
| ! | GATTTTCTTTTCCTACTCCT+AGG | - | chr1_1:12499927-12499946 | Msa0008650:intron | 35.0% |
| ! | TTTTCTTTTCCTACTCCTAG+GGG | - | chr1_1:12499929-12499948 | Msa0008650:intron | 35.0% |
| TCTTGCATCATCAGTTAGTT+GGG | - | chr1_1:12499999-12500018 | Msa0008650:intron | 35.0% | |
| CAGAGATATAAAACCATCCA+TGG | + | chr1_1:12500029-12500048 | None:intergenic | 35.0% | |
| ! | TCCGTATAGGATTGTTTCTT+TGG | - | chr1_1:12500049-12500068 | Msa0008650:intron | 35.0% |
| CCCAAAGAAACAATCCTATA+CGG | + | chr1_1:12500053-12500072 | None:intergenic | 35.0% | |
| ! | CCGTATAGGATTGTTTCTTT+GGG | - | chr1_1:12500050-12500069 | Msa0008650:intron | 35.0% |
| ! | TAGGATTGTTTCTTTGGGTA+TGG | - | chr1_1:12500055-12500074 | Msa0008650:intron | 35.0% |
| CAGTCAGGTTCAAGATTATT+TGG | - | chr1_1:12500340-12500359 | Msa0008650:intron | 35.0% | |
| CAAGCAAGAAATGGTTGTAT+AGG | + | chr1_1:12500458-12500477 | None:intergenic | 35.0% | |
| CTATACAACCATTTCTTGCT+TGG | - | chr1_1:12500456-12500475 | Msa0008650:intron | 35.0% | |
| AAGTGAAACCAAGCAAGAAA+TGG | + | chr1_1:12500467-12500486 | None:intergenic | 35.0% | |
| AAAGTAAGACTGCAAAAGAC+AGG | + | chr1_1:12500506-12500525 | None:intergenic | 35.0% | |
| !! | TTTGTTTGCTGCTTTGTTGA+TGG | - | chr1_1:12500524-12500543 | Msa0008650:CDS | 35.0% |
| AGATAACTATCCTACACTAC+TGG | - | chr1_1:12500779-12500798 | Msa0008650:intron | 35.0% | |
| !! | ATCCTACACTACTGGTTTAT+TGG | - | chr1_1:12500787-12500806 | Msa0008650:intron | 35.0% |
| !! | TCCTACACTACTGGTTTATT+GGG | - | chr1_1:12500788-12500807 | Msa0008650:intron | 35.0% |
| CAAACATGCCTGTTTGAAAA+GGG | + | chr1_1:12500867-12500886 | None:intergenic | 35.0% | |
| !! | AAGATTTGTTTTCTTGCACC+AGG | - | chr1_1:12501011-12501030 | Msa0008650:intron | 35.0% |
| ! | GTGATTTCTGAAGAGTGAAA+CGG | + | chr1_1:12501062-12501081 | None:intergenic | 35.0% |
| !! | TTAGAAATAAAAGCGGGTTG+AGG | + | chr1_1:12501105-12501124 | None:intergenic | 35.0% |
| ! | CTAATCACAGATCAGCATTT+TGG | - | chr1_1:12501121-12501140 | Msa0008650:intron | 35.0% |
| CTCTTCATTCTTCTATTTCC+AGG | - | chr1_1:12501597-12501616 | Msa0008650:intron | 35.0% | |
| CATTCTTCTATTTCCAGGTT+AGG | - | chr1_1:12501602-12501621 | Msa0008650:intron | 35.0% | |
| GCATCTCTGTTCTTACAAAA+TGG | - | chr1_1:12501666-12501685 | Msa0008650:intron | 35.0% | |
| GACACAAAACATAGCAAACA+CGG | + | chr1_1:12501730-12501749 | None:intergenic | 35.0% | |
| !!! | TGTTTGCTATGTTTTGTGTC+TGG | - | chr1_1:12501730-12501749 | Msa0008650:intron | 35.0% |
| TTATTCCCGTATCATTTGCT+TGG | - | chr1_1:12501779-12501798 | Msa0008650:intron | 35.0% | |
| ! | TTTTATGCTCAGACTAGGAT+AGG | - | chr1_1:12501802-12501821 | Msa0008650:intron | 35.0% |
| TAGGATAGGTGGTATTTAGT+TGG | - | chr1_1:12501816-12501835 | Msa0008650:intron | 35.0% | |
| AGGATAGGTGGTATTTAGTT+GGG | - | chr1_1:12501817-12501836 | Msa0008650:intron | 35.0% | |
| AAGAAATAAACCACGCCAAA+TGG | + | chr1_1:12501844-12501863 | None:intergenic | 35.0% | |
| CAAGCTTACTGATGATCTTT+CGG | + | chr1_1:12501872-12501891 | None:intergenic | 35.0% | |
| AACCTGTATACGTCTCTAAA+AGG | - | chr1_1:12502157-12502176 | Msa0008650:intron | 35.0% | |
| !! | TACCTTTTAGAGACGTATAC+AGG | + | chr1_1:12502162-12502181 | None:intergenic | 35.0% |
| !!! | CATTCTTTTAGAGTTGGGTT+TGG | - | chr1_1:12502369-12502388 | Msa0008650:intron | 35.0% |
| ATAAAATAATGCTAGCGCAC+TGG | + | chr1_1:12502630-12502649 | None:intergenic | 35.0% | |
| TATTTGCTTTCTCGTTCAAG+TGG | - | chr1_1:12502647-12502666 | Msa0008650:intron | 35.0% | |
| TGTATTCAAGTGTTTGTGTG+TGG | + | chr1_1:12502774-12502793 | None:intergenic | 35.0% | |
| TATTTGTGAGACACTGAGAA+AGG | - | chr1_1:12503242-12503261 | Msa0008650:intron | 35.0% | |
| ATTGAAATCAACAACAGGCT+AGG | + | chr1_1:12503467-12503486 | None:intergenic | 35.0% | |
| !! | TCTTTGTTATTAGAGCTCTC+TGG | - | chr1_1:12503541-12503560 | Msa0008650:intron | 35.0% |
| AGCTATGAGAAAGTAAACAC+AGG | + | chr1_1:12503900-12503919 | None:intergenic | 35.0% | |
| ATTCCCTACAATACAACAAC+TGG | - | chr1_1:12504077-12504096 | Msa0008650:intron | 35.0% | |
| TGACCAGTTGTTGTATTGTA+GGG | + | chr1_1:12504083-12504102 | None:intergenic | 35.0% | |
| CTTTCTGATGATTCAACCAA+TGG | + | chr1_1:12504108-12504127 | None:intergenic | 35.0% | |
| ! | CATTGGTTGAATCATCAGAA+AGG | - | chr1_1:12504106-12504125 | Msa0008650:intron | 35.0% |
| !!! | ATTCAACTTTTTGGTGGTGA+TGG | + | chr1_1:12504166-12504185 | None:intergenic | 35.0% |
| ATCACCACCAAAAAGTTGAA+TGG | - | chr1_1:12504165-12504184 | Msa0008650:intron | 35.0% | |
| ! | CTTTCCATTCAACTTTTTGG+TGG | + | chr1_1:12504172-12504191 | None:intergenic | 35.0% |
| AACATGTAGTTCTTAGACCA+GGG | - | chr1_1:12504205-12504224 | Msa0008650:intron | 35.0% | |
| CCTATATGCCATAGCTTATA+GGG | - | chr1_1:12504275-12504294 | Msa0008650:intron | 35.0% | |
| ACAAATAGAAGTTCTCTTCC+AGG | + | chr1_1:12504642-12504661 | None:intergenic | 35.0% | |
| ! | TGATGAGTGTGTTTCTAAAG+AGG | - | chr1_1:12504953-12504972 | Msa0008650:CDS | 35.0% |
| !! | GTGTTTCTAAAGAGGTACTT+TGG | - | chr1_1:12504961-12504980 | Msa0008650:CDS | 35.0% |
| GTTCATTGAATGTACTTACG+AGG | + | chr1_1:12505180-12505199 | None:intergenic | 35.0% | |
| AATGATAAGTTCACGCATAC+CGG | + | chr1_1:12505333-12505352 | None:intergenic | 35.0% | |
| ACACTGTATGTTCAATCTGA+TGG | - | chr1_1:12505556-12505575 | Msa0008650:intron | 35.0% | |
| !! | AGTGAACTATAATGGGTGAT+CGG | - | chr1_1:12505696-12505715 | Msa0008650:intron | 35.0% |
| CAAATGAAAAATGCATGAGC+TGG | - | chr1_1:12505724-12505743 | Msa0008650:intron | 35.0% | |
| AGGGATGCTTGAAAGAATTT+GGG | + | chr1_1:12505803-12505822 | None:intergenic | 35.0% | |
| AAGGGATGCTTGAAAGAATT+TGG | + | chr1_1:12505804-12505823 | None:intergenic | 35.0% | |
| ! | CCCCAATCTCTCTAAAAACA+AGG | - | chr1_1:12497899-12497918 | Msa0008650:intron | 40.0% |
| ! | ATGCTAAAGCATTCTACGCA+GGG | + | chr1_1:12498349-12498368 | None:intergenic | 40.0% |
| ! | GGGCCCATTTTCATAATTGT+GGG | - | chr1_1:12498486-12498505 | Msa0008650:intron | 40.0% |
| GGGTCCCACAATTATGAAAA+TGG | + | chr1_1:12498493-12498512 | None:intergenic | 40.0% | |
| ! | CACTCACTCTTTTATTGACG+TGG | + | chr1_1:12498514-12498533 | None:intergenic | 40.0% |
| ! | AAAGAGTGAGTGATGGGAAA+AGG | - | chr1_1:12498522-12498541 | Msa0008650:intron | 40.0% |
| ! | AAGAGTGAGTGATGGGAAAA+GGG | - | chr1_1:12498523-12498542 | Msa0008650:intron | 40.0% |
| GAACTAAGAGGTAAAAGCCA+TGG | + | chr1_1:12499431-12499450 | None:intergenic | 40.0% | |
| CCAAAGCCTGGAATTTCAAA+AGG | + | chr1_1:12499730-12499749 | None:intergenic | 40.0% | |
| !!! | CCTTTTGAAATTCCAGGCTT+TGG | - | chr1_1:12499727-12499746 | Msa0008650:intron | 40.0% |
| TGTGTATGAAAACCAAAGCC+TGG | + | chr1_1:12499742-12499761 | None:intergenic | 40.0% | |
| !!! | AGGCTTTGGTTTTCATACAC+AGG | - | chr1_1:12499741-12499760 | Msa0008650:intron | 40.0% |
| CTATGGCACTATTCATCATC+TGG | - | chr1_1:12499797-12499816 | Msa0008650:intron | 40.0% | |
| GTCTTGCATCATCAGTTAGT+TGG | - | chr1_1:12499998-12500017 | Msa0008650:intron | 40.0% | |
| TCAGTTAGTTGGGATAACCA+TGG | - | chr1_1:12500009-12500028 | Msa0008650:intron | 40.0% | |
| TTAGTTGGGATAACCATGGA+TGG | - | chr1_1:12500013-12500032 | Msa0008650:intron | 40.0% | |
| ACTTTCTTCAACTTGGGCAA+GGG | - | chr1_1:12500224-12500243 | Msa0008650:intron | 40.0% | |
| !! | AATTGACGTAATGGACAACG+AGG | - | chr1_1:12500248-12500267 | Msa0008650:intron | 40.0% |
| TGAACCCAGAGAATGTTAAG+TGG | + | chr1_1:12500322-12500341 | None:intergenic | 40.0% | |
| ! | TTATTTGGGTTTATTGGCGC+CGG | - | chr1_1:12500355-12500374 | Msa0008650:intron | 40.0% |
| TGATCCACAAAGTTGTCCAA+GGG | + | chr1_1:12500386-12500405 | None:intergenic | 40.0% | |
| TAGGGACATGCAAACTTACA+TGG | + | chr1_1:12500439-12500458 | None:intergenic | 40.0% | |
| ! | TGCTTTGTTGATGGAACTTG+CGG | - | chr1_1:12500533-12500552 | Msa0008650:CDS | 40.0% |
| CGATACATCTCATGTTGAAG+AGG | - | chr1_1:12500581-12500600 | Msa0008650:CDS | 40.0% | |
| AGAACTAGGCATCAAACTCT+AGG | - | chr1_1:12500742-12500761 | Msa0008650:intron | 40.0% | |
| ACCCAATAAACCAGTAGTGT+AGG | + | chr1_1:12500792-12500811 | None:intergenic | 40.0% | |
| !! | TACACTACTGGTTTATTGGG+TGG | - | chr1_1:12500791-12500810 | Msa0008650:intron | 40.0% |
| !! | ACACTACTGGTTTATTGGGT+GGG | - | chr1_1:12500792-12500811 | Msa0008650:intron | 40.0% |
| GCAAACATGCCTGTTTGAAA+AGG | + | chr1_1:12500868-12500887 | None:intergenic | 40.0% | |
| ATGTTTGCCAACTCTGAATG+TGG | - | chr1_1:12500880-12500899 | Msa0008650:intron | 40.0% | |
| TGTTTGCCAACTCTGAATGT+GGG | - | chr1_1:12500881-12500900 | Msa0008650:intron | 40.0% | |
| TTCTTTCCCACATTCAGAGT+TGG | + | chr1_1:12500890-12500909 | None:intergenic | 40.0% | |
| ! | TTTCTGAAGAGTGAAACGGA+GGG | + | chr1_1:12501058-12501077 | None:intergenic | 40.0% |
| ! | ATTTCTGAAGAGTGAAACGG+AGG | + | chr1_1:12501059-12501078 | None:intergenic | 40.0% |
| ! | ATTTTTCTGACTTCCCTCTG+CGG | + | chr1_1:12501274-12501293 | None:intergenic | 40.0% |
| TGATTCCAACCCTGAAAATG+AGG | - | chr1_1:12501414-12501433 | Msa0008650:intron | 40.0% | |
| !! | TCTCACTAGCCTCATTTTCA+GGG | + | chr1_1:12501426-12501445 | None:intergenic | 40.0% |
| !! | ATCTCACTAGCCTCATTTTC+AGG | + | chr1_1:12501427-12501446 | None:intergenic | 40.0% |
| AGGACTGAACACACTCTAAA+AGG | - | chr1_1:12501451-12501470 | Msa0008650:intron | 40.0% | |
| TCACTAAAGCGGATGACTTT+GGG | + | chr1_1:12501480-12501499 | None:intergenic | 40.0% | |
| TTCACTAAAGCGGATGACTT+TGG | + | chr1_1:12501481-12501500 | None:intergenic | 40.0% | |
| GCATAATGTTTGGCCCATAT+TGG | - | chr1_1:12501501-12501520 | Msa0008650:intron | 40.0% | |
| AATGTTTGGCCCATATTGGA+AGG | - | chr1_1:12501505-12501524 | Msa0008650:intron | 40.0% | |
| GTATAAAGCTCTATTGCCTC+CGG | - | chr1_1:12501688-12501707 | Msa0008650:intron | 40.0% | |
| !!! | CTTGGTTTTATGCTCAGACT+AGG | - | chr1_1:12501797-12501816 | Msa0008650:intron | 40.0% |
| GGTATTTAGTTGGGTCCATT+TGG | - | chr1_1:12501826-12501845 | Msa0008650:intron | 40.0% | |
| ! | TGGATGATCAATCTCTGAAG+TGG | - | chr1_1:12502094-12502113 | Msa0008650:intron | 40.0% |
| TCACTTTCTGCAATCACAAC+TGG | + | chr1_1:12502201-12502220 | None:intergenic | 40.0% | |
| ! | TGACCTTTTCTGCTTGGATT+TGG | - | chr1_1:12502345-12502364 | Msa0008650:intron | 40.0% |
| TGTCCAAATCCAAGCAGAAA+AGG | + | chr1_1:12502351-12502370 | None:intergenic | 40.0% | |
| ! | ATATGCTCGACTCCTTTTGT+TGG | - | chr1_1:12503168-12503187 | Msa0008650:intron | 40.0% |
| ! | ATTTAGCAGCTCTAGCTGTT+TGG | - | chr1_1:12503199-12503218 | Msa0008650:intron | 40.0% |
| CTAGGACTTTACGGAAACTA+AGG | + | chr1_1:12503449-12503468 | None:intergenic | 40.0% | |
| AACAACAGGCTAGGACTTTA+CGG | + | chr1_1:12503458-12503477 | None:intergenic | 40.0% | |
| GCTAAGGCAAAATAAAGGGA+GGG | + | chr1_1:12503572-12503591 | None:intergenic | 40.0% | |
| GACGGCTAAGGCAAAATAAA+GGG | + | chr1_1:12503576-12503595 | None:intergenic | 40.0% | |
| ACTAGACGACTACTCACAAT+GGG | + | chr1_1:12503635-12503654 | None:intergenic | 40.0% | |
| CCAAGATTTGGCAAGAATAC+AGG | + | chr1_1:12503710-12503729 | None:intergenic | 40.0% | |
| CCTGTATTCTTGCCAAATCT+TGG | - | chr1_1:12503707-12503726 | Msa0008650:intron | 40.0% | |
| ! | GGTATATATCGGGTTTGGTT+TGG | - | chr1_1:12503857-12503876 | Msa0008650:intron | 40.0% |
| ATAGCTGAATATCCCAAGAC+TGG | - | chr1_1:12503914-12503933 | Msa0008650:intron | 40.0% | |
| !! | CCATTTTCAAGACCAGTCTT+GGG | + | chr1_1:12503929-12503948 | None:intergenic | 40.0% |
| !! | TCCATTTTCAAGACCAGTCT+TGG | + | chr1_1:12503930-12503949 | None:intergenic | 40.0% |
| GTGACCAGTTGTTGTATTGT+AGG | + | chr1_1:12504084-12504103 | None:intergenic | 40.0% | |
| !!! | AACTTTTTGGTGGTGATGGT+AGG | + | chr1_1:12504162-12504181 | None:intergenic | 40.0% |
| GTTGAATGGAAAGAACGGTT+TGG | - | chr1_1:12504179-12504198 | Msa0008650:intron | 40.0% | |
| CAACATGTAGTTCTTAGACC+AGG | - | chr1_1:12504204-12504223 | Msa0008650:intron | 40.0% | |
| !!! | CAGGGTCTTTTTGAGTATGT+CGG | - | chr1_1:12504223-12504242 | Msa0008650:intron | 40.0% |
| GCCTATATGCCATAGCTTAT+AGG | - | chr1_1:12504274-12504293 | Msa0008650:intron | 40.0% | |
| CCCTATAAGCTATGGCATAT+AGG | + | chr1_1:12504278-12504297 | None:intergenic | 40.0% | |
| GTGGTTGTATACTCGGAAAA+GGG | + | chr1_1:12504859-12504878 | None:intergenic | 40.0% | |
| TGTGGTTGTATACTCGGAAA+AGG | + | chr1_1:12504860-12504879 | None:intergenic | 40.0% | |
| GTGAAGCAAGAAACTGTTCA+AGG | - | chr1_1:12504905-12504924 | Msa0008650:CDS | 40.0% | |
| ATGCTATTCGGTACCCAAAA+CGG | - | chr1_1:12505276-12505295 | Msa0008650:intron | 40.0% | |
| AACCAACACAGCTATTTGAG+AGG | + | chr1_1:12505366-12505385 | None:intergenic | 40.0% | |
| CCAGGAAAGCCAAAATAATG+AGG | + | chr1_1:12505480-12505499 | None:intergenic | 40.0% | |
| !!! | CCTCATTATTTTGGCTTTCC+TGG | - | chr1_1:12505477-12505496 | Msa0008650:intron | 40.0% |
| ! | TATACCAGGTTTGTTTGCTG+TGG | - | chr1_1:12505599-12505618 | Msa0008650:intron | 40.0% |
| TTATCCACAGCAAACAAACC+TGG | + | chr1_1:12505606-12505625 | None:intergenic | 40.0% | |
| AGAAGAGCAGAGGATTCATG+CGG | + | chr1_1:12497005-12497024 | None:intergenic | 45.0% | |
| CCATTCCTTCTTCTCAGTGA+CGG | - | chr1_1:12497025-12497044 | Msa0008650:three_prime_UTR | 45.0% | |
| GTGCTCTTAGAACACTCGTT+AGG | - | chr1_1:12497442-12497461 | Msa0008650:intron | 45.0% | |
| AATACACGTGTGGAGGTAAG+TGG | - | chr1_1:12497578-12497597 | Msa0008650:CDS | 45.0% | |
| ATACACGTGTGGAGGTAAGT+GGG | - | chr1_1:12497579-12497598 | Msa0008650:CDS | 45.0% | |
| AGAAGCAGAAGAAGCAAGCA+CGG | + | chr1_1:12497636-12497655 | None:intergenic | 45.0% | |
| ! | GTTTTACCTTTGCGTGACGA+AGG | - | chr1_1:12497777-12497796 | Msa0008650:intron | 45.0% |
| ! | GACGAAGGTGCAATTTCGTT+AGG | - | chr1_1:12497792-12497811 | Msa0008650:intron | 45.0% |
| AGCATTCTACGCAGGGTTAA+TGG | + | chr1_1:12498342-12498361 | None:intergenic | 45.0% | |
| ! | GATGCTAAAGCATTCTACGC+AGG | + | chr1_1:12498350-12498369 | None:intergenic | 45.0% |
| TAGGTTCGACCCACTTATGT+GGG | - | chr1_1:12498465-12498484 | Msa0008650:intron | 45.0% | |
| AAAATGGGCCCCACATAAGT+GGG | + | chr1_1:12498477-12498496 | None:intergenic | 45.0% | |
| ! | GGGGCCCATTTTCATAATTG+TGG | - | chr1_1:12498485-12498504 | Msa0008650:intron | 45.0% |
| GGAAACAAAATACCAGGCCA+TGG | - | chr1_1:12499411-12499430 | Msa0008650:intron | 45.0% | |
| ATCTTTCGAGGTCAAAGCAG+TGG | + | chr1_1:12499956-12499975 | None:intergenic | 45.0% | |
| ACCTCGAAAGATGCGAAACT+TGG | - | chr1_1:12499964-12499983 | Msa0008650:intron | 45.0% | |
| ACCAAGTTTCGCATCTTTCG+AGG | + | chr1_1:12499968-12499987 | None:intergenic | 45.0% | |
| ! | GATGCGAAACTTGGTGATCA+AGG | - | chr1_1:12499973-12499992 | Msa0008650:intron | 45.0% |
| CACTTTCTTCAACTTGGGCA+AGG | - | chr1_1:12500223-12500242 | Msa0008650:intron | 45.0% | |
| GGCAAGGGTAATTGACGTAA+TGG | - | chr1_1:12500239-12500258 | Msa0008650:intron | 45.0% | |
| TGGGTCCACTTAACATTCTC+TGG | - | chr1_1:12500314-12500333 | Msa0008650:intron | 45.0% | |
| GGGTCCACTTAACATTCTCT+GGG | - | chr1_1:12500315-12500334 | Msa0008650:intron | 45.0% | |
| AACATTCTCTGGGTTCAGTC+AGG | - | chr1_1:12500325-12500344 | Msa0008650:intron | 45.0% | |
| GTGATCCACAAAGTTGTCCA+AGG | + | chr1_1:12500387-12500406 | None:intergenic | 45.0% | |
| ATCACTGTTTGCCACTGGAA+TGG | - | chr1_1:12500402-12500421 | Msa0008650:intron | 45.0% | |
| ACCAACAAAAGCCATTCCAG+TGG | + | chr1_1:12500416-12500435 | None:intergenic | 45.0% | |
| AAGAGGAACTGTCTCCCATT+AGG | - | chr1_1:12500598-12500617 | Msa0008650:intron | 45.0% | |
| ! | CAACTTGGCCCTTTTCAAAC+AGG | - | chr1_1:12500856-12500875 | Msa0008650:intron | 45.0% |
| GACGAGACAATGATATGTCC+TGG | + | chr1_1:12501032-12501051 | None:intergenic | 45.0% | |
| GAGGTAGTTAGTTAGGAGGT+AGG | + | chr1_1:12501086-12501105 | None:intergenic | 45.0% | |
| GGTTGAGGTAGTTAGTTAGG+AGG | + | chr1_1:12501090-12501109 | None:intergenic | 45.0% | |
| TATGATACGCTACGAGAGCA+GGG | + | chr1_1:12501182-12501201 | None:intergenic | 45.0% | |
| ATATGATACGCTACGAGAGC+AGG | + | chr1_1:12501183-12501202 | None:intergenic | 45.0% | |
| ! | TTTTTCTGACTTCCCTCTGC+GGG | + | chr1_1:12501273-12501292 | None:intergenic | 45.0% |
| !! | ACTAGCCTCATTTTCAGGGT+TGG | + | chr1_1:12501422-12501441 | None:intergenic | 45.0% |
| ATGAGGCTAGTGAGATTGAC+AGG | - | chr1_1:12501431-12501450 | Msa0008650:intron | 45.0% | |
| CACTAAAGCGGATGACTTTG+GGG | + | chr1_1:12501479-12501498 | None:intergenic | 45.0% | |
| AGCCAGAGTCCTTCCAATAT+GGG | + | chr1_1:12501517-12501536 | None:intergenic | 45.0% | |
| AAGCCAGAGTCCTTCCAATA+TGG | + | chr1_1:12501518-12501537 | None:intergenic | 45.0% | |
| GGACAAAAGATCACCTAACC+TGG | + | chr1_1:12501618-12501637 | None:intergenic | 45.0% | |
| CAAAACAGAAGAAGATCCGG+AGG | + | chr1_1:12501707-12501726 | None:intergenic | 45.0% | |
| CGGCAAAACAGAAGAAGATC+CGG | + | chr1_1:12501710-12501729 | None:intergenic | 45.0% | |
| ! | TGTTTTGTGTCTGGTTGTCG+TGG | - | chr1_1:12501739-12501758 | Msa0008650:intron | 45.0% |
| ! | GTTTTGTGTCTGGTTGTCGT+GGG | - | chr1_1:12501740-12501759 | Msa0008650:intron | 45.0% |
| GATACGGGAATAAGACCAAG+TGG | + | chr1_1:12501772-12501791 | None:intergenic | 45.0% | |
| TATGCTCAGACTAGGATAGG+TGG | - | chr1_1:12501805-12501824 | Msa0008650:intron | 45.0% | |
| AAGAGAGCTAGTAACTGTGC+TGG | + | chr1_1:12502233-12502252 | None:intergenic | 45.0% | |
| ! | AGCACAGTTACTAGCTCTCT+TGG | - | chr1_1:12502232-12502251 | Msa0008650:CDS | 45.0% |
| !! | TAAAGTGCACCGACAGGTTT+TGG | - | chr1_1:12502493-12502512 | Msa0008650:intron | 45.0% |
| AAATAATGCTAGCGCACTGG+AGG | + | chr1_1:12502627-12502646 | None:intergenic | 45.0% | |
| TGCTTTCTCGTTCAAGTGGT+AGG | - | chr1_1:12502651-12502670 | Msa0008650:intron | 45.0% | |
| !!! | CTGCAGATGTGCGGTTTTTT+AGG | + | chr1_1:12502688-12502707 | None:intergenic | 45.0% |
| ATCTGCAGTAGCTCTTGACA+AGG | - | chr1_1:12502700-12502719 | Msa0008650:intron | 45.0% | |
| GGCTAAGGCAAAATAAAGGG+AGG | + | chr1_1:12503573-12503592 | None:intergenic | 45.0% | |
| GGACGGCTAAGGCAAAATAA+AGG | + | chr1_1:12503577-12503596 | None:intergenic | 45.0% | |
| CTTAGCCGTCCTTTCAGTTT+GGG | - | chr1_1:12503586-12503605 | Msa0008650:intron | 45.0% | |
| TTAGCCGTCCTTTCAGTTTG+GGG | - | chr1_1:12503587-12503606 | Msa0008650:intron | 45.0% | |
| CACTAGACGACTACTCACAA+TGG | + | chr1_1:12503636-12503655 | None:intergenic | 45.0% | |
| GAGTAGTCGTCTAGTGTCAA+AGG | - | chr1_1:12503640-12503659 | Msa0008650:intron | 45.0% | |
| AGAATACAGGAAGAGAAGGC+CGG | + | chr1_1:12503697-12503716 | None:intergenic | 45.0% | |
| GGCAAGAATACAGGAAGAGA+AGG | + | chr1_1:12503701-12503720 | None:intergenic | 45.0% | |
| ACAGTGCGTGAACCAAGATT+TGG | + | chr1_1:12503722-12503741 | None:intergenic | 45.0% | |
| !! | CCCAAGACTGGTCTTGAAAA+TGG | - | chr1_1:12503926-12503945 | Msa0008650:intron | 45.0% |
| ACAACAACTGGTCACTCCAT+TGG | - | chr1_1:12504089-12504108 | Msa0008650:intron | 45.0% | |
| CGACATACTCAAAAAGACCC+TGG | + | chr1_1:12504225-12504244 | None:intergenic | 45.0% | |
| ACATATGTCGTTACAAGGCC+TGG | - | chr1_1:12504621-12504640 | Msa0008650:intron | 45.0% | |
| GAGCTTTCTTTCCGTCCTAA+AGG | - | chr1_1:12504717-12504736 | Msa0008650:intron | 45.0% | |
| ! | TTGGGCTTGTAGAAGCACAT+AGG | - | chr1_1:12504765-12504784 | Msa0008650:intron | 45.0% |
| AACAGTTTCTTGCTTCACCG+AGG | + | chr1_1:12504903-12504922 | None:intergenic | 45.0% | |
| GCAGATATGCATAGATGTGC+TGG | - | chr1_1:12505212-12505231 | Msa0008650:intron | 45.0% | |
| !! | GATGTGCTGGTTCAAAGACT+TGG | - | chr1_1:12505225-12505244 | Msa0008650:intron | 45.0% |
| !!! | AGTTGATGGGCTTCCGTTTT+GGG | + | chr1_1:12505292-12505311 | None:intergenic | 45.0% |
| CATAAAGGGCAGCAGTTGAT+GGG | + | chr1_1:12505305-12505324 | None:intergenic | 45.0% | |
| ATAAGTTCACGCATACCGGA+AGG | + | chr1_1:12505329-12505348 | None:intergenic | 45.0% | |
| CACAGCTATTTGAGAGGAGA+TGG | + | chr1_1:12505360-12505379 | None:intergenic | 45.0% | |
| CTCCTCTCAAATAGCTGTGT+TGG | - | chr1_1:12505361-12505380 | Msa0008650:intron | 45.0% | |
| GTGTAAAGCAGCAATGTACC+AGG | + | chr1_1:12505498-12505517 | None:intergenic | 45.0% | |
| TTGAAAGTTGAGCTTGCCTG+CGG | + | chr1_1:12505648-12505667 | None:intergenic | 45.0% | |
| CAGGCAAGCTCAACTTTCAA+AGG | - | chr1_1:12505648-12505667 | Msa0008650:intron | 45.0% | |
| TTTCAAGCATCCCTTCTGAG+CGG | - | chr1_1:12505809-12505828 | Msa0008650:CDS | 45.0% | |
| !! | ATATTATAATAATAATTGTA+TGG | - | chr1_1:12497276-12497295 | Msa0008650:intron | 5.0% |
| ! | CGTTTCTGTTTTCCGATCGG+AGG | + | chr1_1:12496927-12496946 | None:intergenic | 50.0% |
| ! | GCGCGTTTCTGTTTTCCGAT+CGG | + | chr1_1:12496930-12496949 | None:intergenic | 50.0% |
| GGAAAACAGAAACGCGCGAT+GGG | - | chr1_1:12496933-12496952 | Msa0008650:three_prime_UTR | 50.0% | |
| GAAAACAGAAACGCGCGATG+GGG | - | chr1_1:12496934-12496953 | Msa0008650:three_prime_UTR | 50.0% | |
| GAAGAGCAGAGGATTCATGC+GGG | + | chr1_1:12497004-12497023 | None:intergenic | 50.0% | |
| GAAGGAATGGAGAAGAGCAG+AGG | + | chr1_1:12497015-12497034 | None:intergenic | 50.0% | |
| CCGTCACTGAGAAGAAGGAA+TGG | + | chr1_1:12497028-12497047 | None:intergenic | 50.0% | |
| TGGATCCGTCACTGAGAAGA+AGG | + | chr1_1:12497033-12497052 | None:intergenic | 50.0% | |
| TACACGTGTGGAGGTAAGTG+GGG | - | chr1_1:12497580-12497599 | Msa0008650:CDS | 50.0% | |
| AAGCAAGCACGGATCTAGTG+CGG | + | chr1_1:12497625-12497644 | None:intergenic | 50.0% | |
| ATTGCACCTTCGTCACGCAA+AGG | + | chr1_1:12497786-12497805 | None:intergenic | 50.0% | |
| TGTAAACGGCGTGGCAATGA+CGG | + | chr1_1:12497862-12497881 | None:intergenic | 50.0% | |
| GTCTGTTAGTGTCTAGCGAC+TGG | + | chr1_1:12497990-12498009 | None:intergenic | 50.0% | |
| GGTGTCTAGACACGCATTAG+TGG | - | chr1_1:12498087-12498106 | Msa0008650:intron | 50.0% | |
| GTAGGTTCGACCCACTTATG+TGG | - | chr1_1:12498464-12498483 | Msa0008650:intron | 50.0% | |
| AGGTTCGACCCACTTATGTG+GGG | - | chr1_1:12498466-12498485 | Msa0008650:intron | 50.0% | |
| GAAAATGGGCCCCACATAAG+TGG | + | chr1_1:12498478-12498497 | None:intergenic | 50.0% | |
| AAGAGGTAAAAGCCATGGCC+TGG | + | chr1_1:12499426-12499445 | None:intergenic | 50.0% | |
| TCCACAAAGTTGTCCAAGGG+TGG | + | chr1_1:12500383-12500402 | None:intergenic | 50.0% | |
| TGTGGATCACTGTTTGCCAC+TGG | - | chr1_1:12500397-12500416 | Msa0008650:intron | 50.0% | |
| ! | GCCACTGGAATGGCTTTTGT+TGG | - | chr1_1:12500412-12500431 | Msa0008650:intron | 50.0% |
| TTGCGGCTCAGACATCAAGA+GGG | - | chr1_1:12500550-12500569 | Msa0008650:CDS | 50.0% | |
| ! | GCGGGTTGAGGTAGTTAGTT+AGG | + | chr1_1:12501093-12501112 | None:intergenic | 50.0% |
| TACGAGAGCAGGGAACATAG+TGG | + | chr1_1:12501172-12501191 | None:intergenic | 50.0% | |
| ! | TTTTCTGACTTCCCTCTGCG+GGG | + | chr1_1:12501272-12501291 | None:intergenic | 50.0% |
| ! | TGTCGTGGGTTGTAACCACT+TGG | - | chr1_1:12501754-12501773 | Msa0008650:intron | 50.0% |
| TTAGTTGGGTCCATTTGGCG+TGG | - | chr1_1:12501831-12501850 | Msa0008650:intron | 50.0% | |
| ! | AGGAACTAAAGTGCACCGAC+AGG | - | chr1_1:12502487-12502506 | Msa0008650:intron | 50.0% |
| TCTCGTTCAAGTGGTAGGAG+AGG | - | chr1_1:12502656-12502675 | Msa0008650:intron | 50.0% | |
| CAAGAGCTACTGCAGATGTG+CGG | + | chr1_1:12502697-12502716 | None:intergenic | 50.0% | |
| TGCAGTAGCTCTTGACAAGG+AGG | - | chr1_1:12502703-12502722 | Msa0008650:intron | 50.0% | |
| GGCGCATTCTTACTGTTGCT+GGG | - | chr1_1:12503133-12503152 | Msa0008650:intron | 50.0% | |
| GCGCATTCTTACTGTTGCTG+GGG | - | chr1_1:12503134-12503153 | Msa0008650:intron | 50.0% | |
| CTCTAGCTGTTTGGCCAGAT+TGG | - | chr1_1:12503208-12503227 | Msa0008650:intron | 50.0% | |
| AGCTGTTTGGCCAGATTGGA+TGG | - | chr1_1:12503212-12503231 | Msa0008650:intron | 50.0% | |
| TGTTTGGCCAGATTGGATGG+TGG | - | chr1_1:12503215-12503234 | Msa0008650:intron | 50.0% | |
| ATAGCCACCACCATCCAATC+TGG | + | chr1_1:12503225-12503244 | None:intergenic | 50.0% | |
| CCAAACTGAAAGGACGGCTA+AGG | + | chr1_1:12503588-12503607 | None:intergenic | 50.0% | |
| CCTTAGCCGTCCTTTCAGTT+TGG | - | chr1_1:12503585-12503604 | Msa0008650:intron | 50.0% | |
| GAAGCCCCAAACTGAAAGGA+CGG | + | chr1_1:12503594-12503613 | None:intergenic | 50.0% | |
| AGCTGAAGCCCCAAACTGAA+AGG | + | chr1_1:12503598-12503617 | None:intergenic | 50.0% | |
| !! | TTGGCTGCTTCTGAGATGGA+TGG | + | chr1_1:12503674-12503693 | None:intergenic | 50.0% |
| ACTGTGGCAAAGCAGAACCA+AGG | + | chr1_1:12503788-12503807 | None:intergenic | 50.0% | |
| GGTTCTGCTTTGCCACAGTT+TGG | - | chr1_1:12503789-12503808 | Msa0008650:intron | 50.0% | |
| AGGATGCAACGACCAAACTG+TGG | + | chr1_1:12503804-12503823 | None:intergenic | 50.0% | |
| GCATCCTGCAATTGTTTGCC+TGG | - | chr1_1:12503817-12503836 | Msa0008650:intron | 50.0% | |
| TGTTGTGGCAGTGAAGTCGT+TGG | + | chr1_1:12505128-12505147 | None:intergenic | 50.0% | |
| !!! | CAGTTGATGGGCTTCCGTTT+TGG | + | chr1_1:12505293-12505312 | None:intergenic | 50.0% |
| CCATAAAGGGCAGCAGTTGA+TGG | + | chr1_1:12505306-12505325 | None:intergenic | 50.0% | |
| CCATCAACTGCTGCCCTTTA+TGG | - | chr1_1:12505303-12505322 | Msa0008650:intron | 50.0% | |
| GCATACCGGAAGGCCATAAA+GGG | + | chr1_1:12505319-12505338 | None:intergenic | 50.0% | |
| TTCAAGCATCCCTTCTGAGC+GGG | - | chr1_1:12505810-12505829 | Msa0008650:CDS | 50.0% | |
| ATCCCTTCTGAGCGGGTAAT+TGG | - | chr1_1:12505817-12505836 | Msa0008650:CDS | 50.0% | |
| CTCCAATTACCCGCTCAGAA+GGG | + | chr1_1:12505822-12505841 | None:intergenic | 50.0% | |
| CGGAAAACAGAAACGCGCGA+TGG | - | chr1_1:12496932-12496951 | Msa0008650:three_prime_UTR | 55.0% | |
| GCTCGTGTCCGTGTTCGTTA+CGG | - | chr1_1:12496974-12496993 | Msa0008650:three_prime_UTR | 55.0% | |
| TGTGACTGACGCTACGTTGG+TGG | + | chr1_1:12497227-12497246 | None:intergenic | 55.0% | |
| GGTTGTGACTGACGCTACGT+TGG | + | chr1_1:12497230-12497249 | None:intergenic | 55.0% | |
| AGCAAGCACGGATCTAGTGC+GGG | + | chr1_1:12497624-12497643 | None:intergenic | 55.0% | |
| GACGAGTGATGTAAACGGCG+TGG | + | chr1_1:12497871-12497890 | None:intergenic | 55.0% | |
| AAGTTGTCCAAGGGTGGCAC+CGG | + | chr1_1:12500377-12500396 | None:intergenic | 55.0% | |
| GCCACCCTTGGACAACTTTG+TGG | - | chr1_1:12500379-12500398 | Msa0008650:intron | 55.0% | |
| CTTGCGGCTCAGACATCAAG+AGG | - | chr1_1:12500549-12500568 | Msa0008650:CDS | 55.0% | |
| GGCCCATATTGGAAGGACTC+TGG | - | chr1_1:12501512-12501531 | Msa0008650:intron | 55.0% | |
| ATGCTAGCGCACTGGAGGAA+TGG | + | chr1_1:12502622-12502641 | None:intergenic | 55.0% | |
| GGGCGCATTCTTACTGTTGC+TGG | - | chr1_1:12503132-12503151 | Msa0008650:intron | 55.0% | |
| ! | TTGGCCAGATTGGATGGTGG+TGG | - | chr1_1:12503218-12503237 | Msa0008650:intron | 55.0% |
| GCTTCAGCTACTGTGAGCAC+TGG | - | chr1_1:12503609-12503628 | Msa0008650:intron | 55.0% | |
| CCATCTCAGAAGCAGCCAAC+CGG | - | chr1_1:12503675-12503694 | Msa0008650:intron | 55.0% | |
| TACAGGAAGAGAAGGCCGGT+TGG | + | chr1_1:12503693-12503712 | None:intergenic | 55.0% | |
| GCTGACAACCAGGGTGATAC+CGG | + | chr1_1:12503762-12503781 | None:intergenic | 55.0% | |
| !! | CCAAGGAGTGCTGACAACCA+GGG | + | chr1_1:12503771-12503790 | None:intergenic | 55.0% |
| !! | ACCAAGGAGTGCTGACAACC+AGG | + | chr1_1:12503772-12503791 | None:intergenic | 55.0% |
| GGCACCAGGCAAACAATTGC+AGG | + | chr1_1:12503824-12503843 | None:intergenic | 55.0% | |
| ! | CAATTAGGGAACAGGGCACC+AGG | + | chr1_1:12503838-12503857 | None:intergenic | 55.0% |
| CTGGTGCCCTGTTCCCTAAT+TGG | - | chr1_1:12503836-12503855 | Msa0008650:intron | 55.0% | |
| GTGGCAGTGAAGTCGTTGGT+TGG | + | chr1_1:12505124-12505143 | None:intergenic | 55.0% | |
| TGCTGCCCTTTATGGCCTTC+CGG | - | chr1_1:12505311-12505330 | Msa0008650:intron | 55.0% | |
| CGCATACCGGAAGGCCATAA+AGG | + | chr1_1:12505320-12505339 | None:intergenic | 55.0% | |
| !! | CAGCATTCTTTTTGGGCCGC+AGG | - | chr1_1:12505629-12505648 | Msa0008650:intron | 55.0% |
| CCTCCAATTACCCGCTCAGA+AGG | + | chr1_1:12505823-12505842 | None:intergenic | 55.0% | |
| CCTTCTGAGCGGGTAATTGG+AGG | - | chr1_1:12505820-12505839 | Msa0008650:CDS | 55.0% | |
| AACAGAAACGCGCGATGGGG+AGG | - | chr1_1:12496937-12496956 | Msa0008650:three_prime_UTR | 60.0% | |
| CGGGTGCACCGTAACGAACA+CGG | + | chr1_1:12496985-12497004 | None:intergenic | 60.0% | |
| GATCTAGTGCGGGGGCAATG+GGG | + | chr1_1:12497614-12497633 | None:intergenic | 60.0% | |
| GGATCTAGTGCGGGGGCAAT+GGG | + | chr1_1:12497615-12497634 | None:intergenic | 60.0% | |
| CAAGCACGGATCTAGTGCGG+GGG | + | chr1_1:12497622-12497641 | None:intergenic | 60.0% | |
| GCAAGCACGGATCTAGTGCG+GGG | + | chr1_1:12497623-12497642 | None:intergenic | 60.0% | |
| AGCAGTGGACCCCTAGGAGT+AGG | + | chr1_1:12499941-12499960 | None:intergenic | 60.0% | |
| GGTCAAAGCAGTGGACCCCT+AGG | + | chr1_1:12499947-12499966 | None:intergenic | 60.0% | |
| ! | CCGGTTGGCTGCTTCTGAGA+TGG | + | chr1_1:12503678-12503697 | None:intergenic | 60.0% |
| GTCTTGCCAGACCTCGCAAC+CGG | - | chr1_1:12503740-12503759 | Msa0008650:intron | 60.0% | |
| ! | GTGATACCGGTTGCGAGGTC+TGG | + | chr1_1:12503749-12503768 | None:intergenic | 60.0% |
| CCCTGGTTGTCAGCACTCCT+TGG | - | chr1_1:12503768-12503787 | Msa0008650:intron | 60.0% | |
| CTTGGAGATGCTGCAGCAGC+TGG | - | chr1_1:12505243-12505262 | Msa0008650:intron | 60.0% | |
| CGCGATGGGGAGGTCTCGAT+TGG | - | chr1_1:12496947-12496966 | Msa0008650:three_prime_UTR | 65.0% | |
| CGGATCTAGTGCGGGGGCAA+TGG | + | chr1_1:12497616-12497635 | None:intergenic | 65.0% | |
| TGACTTCCCTCTGCGGGGCT+GGG | + | chr1_1:12501267-12501286 | None:intergenic | 65.0% | |
| ! | CCAGGGTGATACCGGTTGCG+AGG | + | chr1_1:12503754-12503773 | None:intergenic | 65.0% |
| CCTCGCAACCGGTATCACCC+TGG | - | chr1_1:12503751-12503770 | Msa0008650:intron | 65.0% | |
| !! | ATTGGCGCCGGTGCCACCCT+TGG | - | chr1_1:12500367-12500386 | Msa0008650:intron | 70.0% |
| ACTTCCCTCTGCGGGGCTGG+GGG | + | chr1_1:12501265-12501284 | None:intergenic | 70.0% | |
| GACTTCCCTCTGCGGGGCTG+GGG | + | chr1_1:12501266-12501285 | None:intergenic | 70.0% | |
| CTGACTTCCCTCTGCGGGGC+TGG | + | chr1_1:12501268-12501287 | None:intergenic | 70.0% | |
| TTCCCTCTGCGGGGCTGGGG+GGG | + | chr1_1:12501263-12501282 | None:intergenic | 75.0% | |
| CTTCCCTCTGCGGGGCTGGG+GGG | + | chr1_1:12501264-12501283 | None:intergenic | 75.0% | |
| ! | TCCCTCTGCGGGGCTGGGGG+GGG | + | chr1_1:12501262-12501281 | None:intergenic | 80.0% |
| ! | TCTGCGGGGCTGGGGGGGGG+GGG | + | chr1_1:12501258-12501277 | None:intergenic | 85.0% |
| ! | CTCTGCGGGGCTGGGGGGGG+GGG | + | chr1_1:12501259-12501278 | None:intergenic | 85.0% |
| ! | CCTCTGCGGGGCTGGGGGGG+GGG | + | chr1_1:12501260-12501279 | None:intergenic | 85.0% |
| ! | CCCTCTGCGGGGCTGGGGGG+GGG | + | chr1_1:12501261-12501280 | None:intergenic | 85.0% |
| ! | CCCCCCCCCAGCCCCGCAGA+GGG | - | chr1_1:12501258-12501277 | Msa0008650:CDS | 85.0% |
| ! | TGCGGGGCTGGGGGGGGGGG+GGG | + | chr1_1:12501256-12501275 | None:intergenic | 90.0% |
| ! | CTGCGGGGCTGGGGGGGGGG+GGG | + | chr1_1:12501257-12501276 | None:intergenic | 90.0% |
| ! | CCCCCCCCCCAGCCCCGCAG+AGG | - | chr1_1:12501257-12501276 | Msa0008650:CDS | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501248-12501267 | None:intergenic | 95.0% |
| ! | CTGGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501249-12501268 | None:intergenic | 95.0% |
| ! | GCTGGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501250-12501269 | None:intergenic | 95.0% |
| ! | GGCTGGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501251-12501270 | None:intergenic | 95.0% |
| ! | GGGCTGGGGGGGGGGGGGGG+GGG | + | chr1_1:12501252-12501271 | None:intergenic | 95.0% |
| ! | GGGGCTGGGGGGGGGGGGGG+GGG | + | chr1_1:12501253-12501272 | None:intergenic | 95.0% |
| ! | CGGGGCTGGGGGGGGGGGGG+GGG | + | chr1_1:12501254-12501273 | None:intergenic | 95.0% |
| ! | GCGGGGCTGGGGGGGGGGGG+GGG | + | chr1_1:12501255-12501274 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 12496922 | 12505897 | 12496922 | ID=Msa0008650;Name=Msa0008650 |
| chr1_1 | mRNA | 12496922 | 12505897 | 12496922 | ID=Msa0008650-mRNA-1;Parent=Msa0008650;Name=Msa0008650-mRNA-1;_AED=0.20;_eAED=0.20;_QI=29|0.84|0.78|1|0.76|0.85|14|201|499 |
| chr1_1 | exon | 12496922 | 12497212 | 12496922 | ID=Msa0008650-mRNA-1:exon:4775;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12497487 | 12497603 | 12497487 | ID=Msa0008650-mRNA-1:exon:4774;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12498124 | 12498204 | 12498124 | ID=Msa0008650-mRNA-1:exon:4773;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12499556 | 12499687 | 12499556 | ID=Msa0008650-mRNA-1:exon:4772;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12500492 | 12500605 | 12500492 | ID=Msa0008650-mRNA-1:exon:4771;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12501201 | 12501411 | 12501201 | ID=Msa0008650-mRNA-1:exon:4770;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12502200 | 12502302 | 12502200 | ID=Msa0008650-mRNA-1:exon:4769;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12502380 | 12502476 | 12502380 | ID=Msa0008650-mRNA-1:exon:4768;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12502550 | 12502618 | 12502550 | ID=Msa0008650-mRNA-1:exon:4767;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12502748 | 12502870 | 12502748 | ID=Msa0008650-mRNA-1:exon:4766;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12502978 | 12503076 | 12502978 | ID=Msa0008650-mRNA-1:exon:4765;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12504899 | 12505063 | 12504899 | ID=Msa0008650-mRNA-1:exon:4764;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12505159 | 12505171 | 12505159 | ID=Msa0008650-mRNA-1:exon:4763;Parent=Msa0008650-mRNA-1 |
| chr1_1 | exon | 12505783 | 12505897 | 12505783 | ID=Msa0008650-mRNA-1:exon:4762;Parent=Msa0008650-mRNA-1 |
| chr1_1 | five_prime_UTR | 12505869 | 12505897 | 12505869 | ID=Msa0008650-mRNA-1:five_prime_utr;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12505783 | 12505868 | 12505783 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12505159 | 12505171 | 12505159 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12504899 | 12505063 | 12504899 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12502978 | 12503076 | 12502978 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12502748 | 12502870 | 12502748 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12502550 | 12502618 | 12502550 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12502380 | 12502476 | 12502380 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12502200 | 12502302 | 12502200 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12501201 | 12501411 | 12501201 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12500492 | 12500605 | 12500492 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12499556 | 12499687 | 12499556 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12498124 | 12498204 | 12498124 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12497487 | 12497603 | 12497487 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | CDS | 12497123 | 12497212 | 12497123 | ID=Msa0008650-mRNA-1:cds;Parent=Msa0008650-mRNA-1 |
| chr1_1 | three_prime_UTR | 12496922 | 12497122 | 12496922 | ID=Msa0008650-mRNA-1:three_prime_utr;Parent=Msa0008650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
