AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0009090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009090 MtrunA17_Chr1g0146301 97.384 688 7 4 1 681 1 684 0.0 1389
Msa0009090 MtrunA17_Chr3g0140431 86.644 599 74 2 87 681 2 598 0.0 1105
Msa0009090 MtrunA17_Chr7g0214531 79.564 597 115 2 90 680 3 598 0.0 1028
Msa0009090 MtrunA17_Chr1g0213321 72.308 650 173 3 35 680 29 675 0.0 999
Msa0009090 MtrunA17_Chr7g0253211 75.212 589 141 1 97 680 296 884 0.0 962
Msa0009090 MtrunA17_Chr8g0340491 76.342 596 132 3 94 681 97 691 0.0 949
Msa0009090 MtrunA17_Chr4g0071031 38.828 273 156 5 125 394 9 273 4.16e-59 206
Msa0009090 MtrunA17_Chr2g0329981 38.828 273 156 5 125 394 9 273 8.48e-59 205
Msa0009090 MtrunA17_Chr2g0299661 38.462 273 157 5 125 394 9 273 1.31e-57 202
Msa0009090 MtrunA17_Chr8g0342821 37.828 267 154 6 125 388 9 266 3.58e-56 198
Msa0009090 MtrunA17_Chr7g0261501 38.095 273 158 5 125 394 9 273 3.95e-56 198
Msa0009090 MtrunA17_Chr1g0187571 38.710 279 158 6 119 394 6 274 5.83e-56 197
Msa0009090 MtrunA17_Chr1g0166821 37.634 279 161 6 119 394 6 274 7.63e-56 197
Msa0009090 MtrunA17_Chr1g0183631 37.634 279 161 6 119 394 5 273 2.23e-54 193
Msa0009090 MtrunA17_Chr6g0486611 37.363 273 160 5 125 394 9 273 4.87e-54 191
Msa0009090 MtrunA17_Chr1g0146151 37.456 283 163 7 115 394 2 273 5.76e-54 191
Msa0009090 MtrunA17_Chr8g0390211 37.276 279 162 6 119 394 5 273 2.14e-53 189
Msa0009090 MtrunA17_Chr1g0167261 37.102 283 163 6 117 394 4 276 1.25e-52 185
Msa0009090 MtrunA17_Chr3g0140071 36.201 279 165 6 119 394 5 273 1.38e-52 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009090 AT2G25760.1 75.216 694 135 9 3 681 2 673 0.0 1082
Msa0009090 AT2G25760.2 74.605 697 137 10 3 681 2 676 0.0 1072
Msa0009090 AT3G13670.1 76.246 602 129 3 90 681 106 703 0.0 990
Msa0009090 AT3G03940.1 74.086 602 149 2 84 680 101 700 0.0 969
Msa0009090 AT5G18190.2 72.517 604 159 2 82 680 89 690 0.0 953
Msa0009090 AT5G18190.1 72.517 604 159 2 82 680 89 690 0.0 953
Msa0009090 AT3G03930.1 71.250 240 69 0 441 680 48 287 2.63e-123 368
Msa0009090 AT2G19470.1 38.828 273 156 5 125 394 9 273 3.12e-58 203
Msa0009090 AT5G57015.1 38.095 273 158 5 125 394 9 273 7.35e-58 202
Msa0009090 AT3G23340.1 38.710 279 158 6 119 394 5 273 7.77e-58 202
Msa0009090 AT4G26100.1 38.095 273 158 5 125 394 9 273 7.97e-58 202
Msa0009090 AT1G03930.1 37.993 279 160 6 119 394 5 273 6.86e-57 201
Msa0009090 AT4G14340.2 38.710 279 158 6 119 394 11 279 7.25e-57 197
Msa0009090 AT4G14340.1 38.710 279 158 6 119 394 11 279 8.64e-57 200
Msa0009090 AT1G72710.1 38.462 273 156 6 125 394 9 272 4.52e-56 198
Msa0009090 AT5G44100.1 36.918 279 163 6 119 394 5 273 1.20e-55 197
Msa0009090 AT5G44100.2 36.918 279 163 6 119 394 5 273 1.20e-55 197
Msa0009090 AT4G28540.1 37.276 279 162 6 119 394 9 277 1.96e-55 197
Msa0009090 AT5G43320.1 37.276 279 162 6 119 394 5 273 5.90e-54 192
Msa0009090 AT4G28880.3 37.276 279 162 6 119 394 5 273 6.99e-54 191
Msa0009090 AT4G28880.2 37.276 279 162 6 119 394 5 273 6.99e-54 191
Msa0009090 AT4G28880.1 37.276 279 162 6 119 394 5 273 6.99e-54 191
Msa0009090 AT4G28880.4 37.276 279 162 6 119 394 5 273 6.99e-54 191
Msa0009090 AT4G28860.2 37.276 279 162 6 119 394 5 273 1.76e-53 189
Msa0009090 AT4G28860.1 37.276 279 162 6 119 394 5 273 2.63e-53 189
Msa0009090 AT5G43320.2 37.276 279 162 6 119 394 5 273 3.11e-53 187
Msa0009090 AT5G43320.3 37.276 279 162 6 119 394 5 273 3.11e-53 187
Msa0009090 AT1G04440.1 36.559 279 164 6 119 394 5 273 7.82e-53 189
Msa0009090 AT3G23340.2 38.314 261 150 5 137 394 7 259 3.33e-51 184
Msa0009090 AT4G08800.1 33.333 273 139 6 125 394 9 241 1.07e-41 153

Find 208 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATATATTTGGCATAATT+TGG 0.158062 1_1:-13289215 None:intergenic
CTGAGCACCGTCAGTGTTTA+TGG 0.167427 1_1:-13289279 None:intergenic
CCCATTCTGACTTTCTTCTT+TGG 0.171287 1_1:-13289456 None:intergenic
CTCACGTGCCGGAACAAATT+AGG 0.172612 1_1:+13286425 Msa0009090:CDS
ATATTCTTGGCCCTAGTTTA+TGG 0.174994 1_1:+13287886 Msa0009090:CDS
AGGAGGCATGTTAATCTTTA+AGG 0.188962 1_1:-13286203 None:intergenic
TAACCTTTGGGCACTGATTA+TGG 0.191586 1_1:+13289710 Msa0009090:CDS
ATCGAAAAGTGATATATATT+TGG 0.208565 1_1:-13289225 None:intergenic
CTCTTAAATCTGGCTAGTTT+TGG 0.219764 1_1:+13290839 Msa0009090:three_prime_UTR
AAATGATTCACTGACCTTAT+AGG 0.232158 1_1:-13290223 None:intergenic
AGAATGCATCTTCTCTAATA+TGG 0.254263 1_1:-13288089 None:intergenic
CTACCTCGTGTAGCGGGTTC+GGG 0.258671 1_1:-13286295 None:intergenic
ACCAGTAAAGGGTGTAATTA+TGG 0.259169 1_1:+13287587 Msa0009090:CDS
TTCTGATAAGCAAGAGATTA+TGG 0.259548 1_1:+13286450 Msa0009090:CDS
TAGGTTGTTGTTCTAACCTT+TGG 0.265781 1_1:+13289697 Msa0009090:CDS
TCCATAATTACACCCTTTAC+TGG 0.271957 1_1:-13287588 None:intergenic
TCGGGTTTAGCGATCGGGTT+CGG 0.281544 1_1:-13286277 None:intergenic
TGAAGTCTTTAAGCTACTTC+TGG 0.282427 1_1:+13291213 Msa0009090:three_prime_UTR
TCTTGTTTGCAAGAAGAAAA+TGG 0.283561 1_1:+13289103 Msa0009090:CDS
GCCCTAGTTTATGGGATGTT+TGG 0.283968 1_1:+13287895 Msa0009090:CDS
GAAGAAAACCTTTGCTTCAT+AGG 0.289095 1_1:-13289522 None:intergenic
TTGTTTGTATGTAGTGTATT+AGG 0.289760 1_1:+13287704 Msa0009090:intron
ATGGGTCTAATGTCTGGATT+TGG 0.294234 1_1:-13289260 None:intergenic
TTTCTGGTTGATCTTGGTTT+AGG 0.301281 1_1:+13288584 Msa0009090:CDS
TCTACCTCGTGTAGCGGGTT+CGG 0.313908 1_1:-13286296 None:intergenic
TATTCTTGGCCCTAGTTTAT+GGG 0.314228 1_1:+13287887 Msa0009090:CDS
CGGGTTTAGCGATCGGGTTC+GGG 0.318336 1_1:-13286276 None:intergenic
TCACGTGCCGGAACAAATTA+GGG 0.325179 1_1:+13286426 Msa0009090:CDS
TGAGCACCGTCAGTGTTTAT+GGG 0.331178 1_1:-13289278 None:intergenic
AAGCTAGGGAAAGGAGGTTT+TGG 0.342457 1_1:+13286718 Msa0009090:CDS
ATCAACGTCCAGATGTATTT+AGG 0.344411 1_1:+13288761 Msa0009090:CDS
ACACTAATCCATTGTGTTGC+TGG 0.346898 1_1:-13289483 None:intergenic
ACTCCATGAAACACTCTTCA+TGG 0.346925 1_1:+13286175 Msa0009090:five_prime_UTR
TTAAGCTACTTCTGGCCTCT+TGG 0.354826 1_1:+13291221 Msa0009090:three_prime_UTR
TTGCAGGTCATGGATATTCT+TGG 0.355219 1_1:+13287873 Msa0009090:intron
AGGTTGTTGTTCTAACCTTT+GGG 0.362175 1_1:+13289698 Msa0009090:CDS
AGGTTAGGTTTGTTTATTGA+TGG 0.362461 1_1:+13291096 Msa0009090:three_prime_UTR
TGGCCACTGCTGGAAGTAGA+TGG 0.368491 1_1:+13290298 Msa0009090:CDS
CTTTAGGATGTCTGCTGAAA+TGG 0.375494 1_1:+13288039 Msa0009090:intron
CATCATATGATTAGTGATTA+CGG 0.379624 1_1:-13290936 None:intergenic
TTCTTCGCGGACGGCTACCC+TGG 0.381224 1_1:+13288972 Msa0009090:CDS
TCAGAAACCCTAATTTGTTC+CGG 0.382437 1_1:-13286433 None:intergenic
ATAGGATTGCTGCAAGTATT+GGG 0.382481 1_1:-13290205 None:intergenic
TATAGGATTGCTGCAAGTAT+TGG 0.382981 1_1:-13290206 None:intergenic
ACACTGCTTTCTCTTAAATC+TGG 0.384194 1_1:+13290829 Msa0009090:three_prime_UTR
AGTCTTGATAGAAAGTTTGT+AGG 0.387767 1_1:+13291036 Msa0009090:three_prime_UTR
GTGTTTATGGGTCTAATGTC+TGG 0.388332 1_1:-13289266 None:intergenic
AGGTAGCAGAAGAGATGATT+TGG 0.392165 1_1:+13288922 Msa0009090:CDS
TCAGCTGTGCATCTTGAACT+TGG 0.404866 1_1:+13291169 Msa0009090:three_prime_UTR
TAGCTGCAGGGTGAAAATAA+AGG 0.408921 1_1:+13289077 Msa0009090:intron
GGGAGAACCGCAGCTGATAA+AGG 0.410075 1_1:+13286496 Msa0009090:CDS
CGGGTTCGGGTTTAGCGATC+GGG 0.416775 1_1:-13286282 None:intergenic
ATCCTCTCTGACAAGTTTGC+CGG 0.419070 1_1:+13290870 Msa0009090:three_prime_UTR
GTTTATGTTGGTCGTCGTAT+TGG 0.427782 1_1:+13286745 Msa0009090:CDS
AAATGTGAAGGTATTTACTT+AGG 0.430671 1_1:+13291076 Msa0009090:three_prime_UTR
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 1_1:+13290324 Msa0009090:CDS
GTCTTGATAGAAAGTTTGTA+GGG 0.431009 1_1:+13291037 Msa0009090:three_prime_UTR
ATACTTGCAGCAATCCTATA+AGG 0.432661 1_1:+13290209 Msa0009090:CDS
CTGATTATGGATGCCGGCAC+TGG 0.434575 1_1:+13289723 Msa0009090:CDS
ACAAGTTACCTAAATACATC+TGG 0.436822 1_1:-13288769 None:intergenic
CTCCCTTCATCTTCAGCAAC+CGG 0.439789 1_1:-13286520 None:intergenic
ACGTGCAGCGGCGGCGGCGA+TGG 0.440494 1_1:-13286350 None:intergenic
TATATTGCATCTATTTGTTA+CGG 0.443891 1_1:+13290740 Msa0009090:CDS
TATGACCTGGTATCCTTGCC+AGG 0.447271 1_1:-13288990 None:intergenic
GCTCCATGAAGAGTGTTTCA+TGG 0.448600 1_1:-13286178 None:intergenic
ACAAGGGACGGCAAGGTGAT+TGG 0.451632 1_1:+13287756 Msa0009090:CDS
CGGCGGCGATGGTGTTGTTA+CGG 0.451967 1_1:-13286339 None:intergenic
GCGGGTTCGGGTTTAGCGAT+CGG 0.452422 1_1:-13286283 None:intergenic
TGAAGGTATTTACTTAGGTT+AGG 0.453673 1_1:+13291081 Msa0009090:three_prime_UTR
TTGATCACGTGCAGCGGCGG+CGG 0.456771 1_1:-13286356 None:intergenic
GCCATAGCAGGATCTAATAG+TGG 0.459499 1_1:+13289994 Msa0009090:CDS
TTTGAGCATAAAACCAGTAA+AGG 0.460416 1_1:+13287575 Msa0009090:CDS
TTTACCTTGACATGAGTACT+AGG 0.461394 1_1:-13290623 None:intergenic
TAGAACCGACGCAGATAGAG+AGG 0.464335 1_1:-13286086 None:intergenic
AGTAGCTTAAAGACTTCAAA+AGG 0.466019 1_1:-13291208 None:intergenic
GGGTTATTTATCAGTAGTGT+AGG 0.469943 1_1:+13289678 Msa0009090:CDS
AACTCAATAAACTGCCGAAA+AGG 0.471641 1_1:-13289164 None:intergenic
ATCGAAAAGGGATATGAAGA+TGG 0.473461 1_1:+13289657 Msa0009090:CDS
TCGGCAGTTTATTGAGTTCG+TGG 0.473854 1_1:+13289169 Msa0009090:CDS
TACAGAGTAGATAGAAAGCT+AGG 0.474012 1_1:+13286703 Msa0009090:CDS
CTCATCCTTCTTCCTTCACA+AGG 0.477955 1_1:+13289770 Msa0009090:CDS
CTGAATCTCAGAAAGCTTCA+CGG 0.478991 1_1:-13290780 None:intergenic
CTCATCATCATCTCCTTCCA+TGG 0.479092 1_1:-13289430 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.481033 1_1:+13290288 Msa0009090:CDS
GCCAAAGAAGAAAGTCAGAA+TGG 0.481635 1_1:+13289455 Msa0009090:CDS
AACAAATAGATGCAATATAG+AGG 0.484055 1_1:-13290736 None:intergenic
TTGAGCATAAAACCAGTAAA+GGG 0.485067 1_1:+13287576 Msa0009090:CDS
TGGACCTCCTTACGAGTGGC+AGG 0.485361 1_1:+13287607 Msa0009090:CDS
CGTCGTATTGGTGCCGGTGC+CGG 0.485454 1_1:+13286757 Msa0009090:CDS
GTGAATCATTTCCATTCAAG+TGG 0.485946 1_1:+13290235 Msa0009090:CDS
AGGGTAGCCGTCCGCGAAGA+AGG 0.489461 1_1:-13288970 None:intergenic
AACAACCTTGTGAAGGAAGA+AGG 0.492459 1_1:-13289775 None:intergenic
GTTGTCCCAACACATCGAAA+AGG 0.495024 1_1:+13289644 Msa0009090:CDS
GATGACTGTGATAGCGGCGG+TGG 0.500267 1_1:+13286475 Msa0009090:CDS
GGTCCGGTTGCTGAAGATGA+AGG 0.507097 1_1:+13286517 Msa0009090:CDS
AGGAATGGATTATGGAACAG+TGG 0.508088 1_1:+13289950 Msa0009090:intron
GCTAGTGTACATGCTCATCT+TGG 0.512428 1_1:+13288893 Msa0009090:CDS
TTGTAACAGGTTCAGGTGGG+TGG 0.514399 1_1:+13286670 Msa0009090:intron
TATTACATTAGTGCCATAGC+AGG 0.514536 1_1:+13289982 Msa0009090:CDS
GATAGAAAGCTAGGGAAAGG+AGG 0.516277 1_1:+13286712 Msa0009090:CDS
ATCTGAAAATCCAGCACCAC+GGG 0.518126 1_1:-13290334 None:intergenic
TTCCAAACATCCCATAAACT+AGG 0.518224 1_1:-13287897 None:intergenic
GTTTCTTGAGTTTCATCAGT+CGG 0.518437 1_1:-13290581 None:intergenic
CCTCTTCTACCTCGTGTAGC+GGG 0.519563 1_1:-13286301 None:intergenic
TCGTTGGTTGTAATGTCAAA+AGG 0.520574 1_1:+13290021 Msa0009090:CDS
CATGCTCATCTTGGTAGGAC+AGG 0.525496 1_1:+13288902 Msa0009090:CDS
CCAAAGAAGAAAGTCAGAAT+GGG 0.530872 1_1:+13289456 Msa0009090:CDS
AACCGCAGCTGATAAAGGTC+CGG 0.531660 1_1:+13286501 Msa0009090:CDS
GAACAATAATTAAAATGTGA+AGG 0.536883 1_1:+13291064 Msa0009090:three_prime_UTR
ATAAACTGCCGAAAAGGTGC+GGG 0.538646 1_1:-13289158 None:intergenic
TTTGCCATGCAGCAACTCGT+TGG 0.539312 1_1:+13288704 Msa0009090:intron
TTGTCCCAACACATCGAAAA+GGG 0.539526 1_1:+13289645 Msa0009090:CDS
AAAACCTTTGCTTCATAGGT+CGG 0.541274 1_1:-13289518 None:intergenic
AAAATGTCCAGTGGCCACAC+TGG 0.542344 1_1:-13291147 None:intergenic
CGCGGACGGCTACCCTGGCA+AGG 0.543822 1_1:+13288977 Msa0009090:CDS
TAAGTTTCCAGTGTGGCCAC+TGG 0.544452 1_1:+13291140 Msa0009090:three_prime_UTR
TTCACCCTCTCTATCTGCGT+CGG 0.546421 1_1:+13286081 Msa0009090:five_prime_UTR
CAATGCAGAAGGGATTTGTC+CGG 0.547715 1_1:-13290889 None:intergenic
AAACACTGACGGTGCTCAGA+AGG 0.548675 1_1:+13289283 Msa0009090:CDS
CTTAAAGACTTCAAAAGGAA+AGG 0.549419 1_1:-13291203 None:intergenic
CGTCCCTTGTAATGAACTCG+TGG 0.549783 1_1:-13287743 None:intergenic
GCTACCCTGGCAAGGATACC+AGG 0.551712 1_1:+13288985 Msa0009090:CDS
GTGAAGGTATTCATCGAAGG+TGG 0.556433 1_1:+13290480 Msa0009090:CDS
AAACGAACAACCTCACGTGC+CGG 0.557745 1_1:+13286414 Msa0009090:CDS
GCATATCAGCAACATTGTAA+TGG 0.559923 1_1:-13289620 None:intergenic
CCCGCTACACGAGGTAGAAG+AGG 0.561644 1_1:+13286301 Msa0009090:CDS
TTTGTATGTAGTGTATTAGG+AGG 0.562063 1_1:+13287707 Msa0009090:intron
TCCAAACATCCCATAAACTA+GGG 0.562426 1_1:-13287896 None:intergenic
ACCTCTTCTACCTCGTGTAG+CGG 0.562642 1_1:-13286302 None:intergenic
GTAGATAGAAAGCTAGGGAA+AGG 0.563147 1_1:+13286709 Msa0009090:CDS
GGAATGGATTATGGAACAGT+GGG 0.563150 1_1:+13289951 Msa0009090:intron
TGCCGGTGCCGGTGCTGTTG+AGG 0.563693 1_1:+13286768 Msa0009090:CDS
TTGTAAACCTGCCACTCGTA+AGG 0.564528 1_1:-13287614 None:intergenic
CACGAGTTCATTACAAGGGA+CGG 0.566096 1_1:+13287744 Msa0009090:CDS
GCCGAAAAGGTGCGGGACAG+AGG 0.569844 1_1:-13289151 None:intergenic
TGGGCACTGATTATGGATGC+CGG 0.570860 1_1:+13289717 Msa0009090:CDS
ATCTAATAGTGGGAGCTCGT+TGG 0.570915 1_1:+13290005 Msa0009090:CDS
GGCCACTGCTGGAAGTAGAT+GGG 0.571298 1_1:+13290299 Msa0009090:CDS
GTTGGTCGTCGTATTGGTGC+CGG 0.571967 1_1:+13286751 Msa0009090:CDS
CTTCGATGAATACCTTCACT+AGG 0.572280 1_1:-13290476 None:intergenic
TCAAAAGGAAAGGAGAAAAG+AGG 0.574251 1_1:-13291193 None:intergenic
AGAGGACGGTTGACCATGGA+AGG 0.574941 1_1:+13289417 Msa0009090:CDS
TACCTCAACAGCACCGGCAC+CGG 0.575462 1_1:-13286770 None:intergenic
TATGCATACATCAATGCAGA+AGG 0.575574 1_1:-13290900 None:intergenic
CTAATTTGTTCCGGCACGTG+AGG 0.575786 1_1:-13286424 None:intergenic
TACTAAGAACAAGAGCAGCC+TGG 0.577119 1_1:-13290544 None:intergenic
TCGAAAAGGGATATGAAGAT+GGG 0.578550 1_1:+13289658 Msa0009090:CDS
CTATCATACCTCAACAGCAC+CGG 0.581895 1_1:-13286776 None:intergenic
CGTTGGCGTGATAATTCGAC+TGG 0.587524 1_1:+13288721 Msa0009090:CDS
GCAAGGTGATTGGTATGTCA+TGG 0.589006 1_1:+13287766 Msa0009090:CDS
CGCGCCGACCTATGAAGCAA+AGG 0.589757 1_1:+13289514 Msa0009090:CDS
AACTGCTGCTACATATGACC+AGG 0.592537 1_1:+13290526 Msa0009090:CDS
ACAGAGTAGATAGAAAGCTA+GGG 0.592579 1_1:+13286704 Msa0009090:CDS
CTGGAAGATTCGAACGACGA+CGG 0.594413 1_1:-13286145 None:intergenic
TACTTGATCACGTGCAGCGG+CGG 0.595072 1_1:-13286359 None:intergenic
AACCGGACCTTTATCAGCTG+CGG 0.595722 1_1:-13286503 None:intergenic
AATAAACTGCCGAAAAGGTG+CGG 0.597388 1_1:-13289159 None:intergenic
TGTATGCATAACTTATTATG+TGG 0.600627 1_1:+13290913 Msa0009090:three_prime_UTR
GTGTACATGCTCATCTTGGT+AGG 0.600986 1_1:+13288897 Msa0009090:CDS
GTCCGGTTGCTGAAGATGAA+GGG 0.607367 1_1:+13286518 Msa0009090:CDS
TTTCTGGTTCGAAGTTGAGG+AGG 0.607805 1_1:-13286220 None:intergenic
CTTTCCTAGTACTCATGTCA+AGG 0.608784 1_1:+13290619 Msa0009090:CDS
TTGTGCAGTGAAACCAGTGC+CGG 0.610323 1_1:-13289736 None:intergenic
TGCCCATCTACTTCCAGCAG+TGG 0.611695 1_1:-13290301 None:intergenic
CCATAGCAGGATCTAATAGT+GGG 0.612424 1_1:+13289995 Msa0009090:CDS
CCCACTATTAGATCCTGCTA+TGG 0.617210 1_1:-13289995 None:intergenic
TCTCTTCATGAGTTCCCGGA+GGG 0.618779 1_1:-13288553 None:intergenic
GTTCATTACAAGGGACGGCA+AGG 0.622003 1_1:+13287749 Msa0009090:CDS
TATCAGGTTGGACAGAAGAG+AGG 0.622077 1_1:+13289399 Msa0009090:intron
GAAGAGAGGACGGTTGACCA+TGG 0.624209 1_1:+13289413 Msa0009090:CDS
TTGTACTTGATCACGTGCAG+CGG 0.625961 1_1:-13286362 None:intergenic
TGAAGGTATTCATCGAAGGT+GGG 0.628022 1_1:+13290481 Msa0009090:CDS
TTCTCTTCATGAGTTCCCGG+AGG 0.630312 1_1:-13288554 None:intergenic
TGGGAATGCCAGCAACACAA+TGG 0.633757 1_1:+13289475 Msa0009090:CDS
CTAGTGAAGGTATTCATCGA+AGG 0.635960 1_1:+13290477 Msa0009090:CDS
TAGAGAAGATGCATTCTAGA+GGG 0.637214 1_1:+13288095 Msa0009090:CDS
CTTTCTATCAAGACTCACCC+AGG 0.639397 1_1:-13291028 None:intergenic
ATGACCTGGTATCCTTGCCA+GGG 0.644585 1_1:-13288989 None:intergenic
TTAGAGAAGATGCATTCTAG+AGG 0.645638 1_1:+13288094 Msa0009090:CDS
ATTCATCGAAGGTGGGACAA+TGG 0.646078 1_1:+13290488 Msa0009090:CDS
TGGGCAATTGTTATGTCCCG+TGG 0.648130 1_1:+13290318 Msa0009090:CDS
TTTCTATCTACTCTGTACAT+CGG 0.650362 1_1:-13286697 None:intergenic
TCTTGATAGAAAGTTTGTAG+GGG 0.651158 1_1:+13291038 Msa0009090:three_prime_UTR
TGTCCCACGAGTTCATTACA+AGG 0.652591 1_1:+13287739 Msa0009090:CDS
AATGAACTCGTGGGACACCA+TGG 0.653940 1_1:-13287733 None:intergenic
TAAACCTGCCACTCGTAAGG+AGG 0.654486 1_1:-13287611 None:intergenic
CATCCATAATCAGTGCCCAA+AGG 0.657903 1_1:-13289713 None:intergenic
ATGCATACATCAATGCAGAA+GGG 0.661234 1_1:-13290899 None:intergenic
ATGACTGTGATAGCGGCGGT+GGG 0.665147 1_1:+13286476 Msa0009090:CDS
GGTGTCGTGTATAGCAATCG+AGG 0.667047 1_1:+13288060 Msa0009090:CDS
GTCCGGCAAACTTGTCAGAG+AGG 0.668074 1_1:-13290872 None:intergenic
GTCAAATTCAGAAATCCAAG+AGG 0.671782 1_1:-13291236 None:intergenic
AGTGTATTAGGAGGTAGCCA+TGG 0.671950 1_1:+13287716 Msa0009090:intron
GATCTGAAAATCCAGCACCA+CGG 0.671996 1_1:-13290335 None:intergenic
ATTTGTTTCAGATACGTGCA+TGG 0.673109 1_1:+13288500 Msa0009090:intron
GTCCCTTGTAATGAACTCGT+GGG 0.673497 1_1:-13287742 None:intergenic
ATTACAATGTTGCTGATATG+CGG 0.677018 1_1:+13289622 Msa0009090:CDS
ATGGATGATGACTGTGATAG+CGG 0.678914 1_1:+13286469 Msa0009090:CDS
AGAACCGACGCAGATAGAGA+GGG 0.681875 1_1:-13286085 None:intergenic
AGGTTGGACAGAAGAGAGGA+CGG 0.682501 1_1:+13289403 Msa0009090:intron
ATTAGACCCATAAACACTGA+CGG 0.692330 1_1:+13289272 Msa0009090:CDS
GTCCCACGAGTTCATTACAA+GGG 0.693718 1_1:+13287740 Msa0009090:CDS
TAGCAGCAGTTGAAGTAATG+CGG 0.693804 1_1:-13290514 None:intergenic
ATTATGGACCTCCTTACGAG+TGG 0.700752 1_1:+13287603 Msa0009090:CDS
GCACAGCTGAAAATGTCCAG+TGG 0.709666 1_1:-13291156 None:intergenic
AAACCCGAACCCGCTACACG+AGG 0.720713 1_1:+13286292 Msa0009090:CDS
GATGATGACTGTGATAGCGG+CGG 0.731600 1_1:+13286472 Msa0009090:CDS
GCTACTATAAGTTTCCAGTG+TGG 0.756031 1_1:+13291133 Msa0009090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTGATATTTTTTCAT+TGG + chr1_1:13286040-13286059 Msa0009090:five_prime_UTR 10.0%
!!! TAAAAAAAATTTACTTTTTC+AGG - chr1_1:13286559-13286578 None:intergenic 10.0%
!!! AAATTTAATTTTTTTGTAAC+AGG + chr1_1:13286657-13286676 Msa0009090:intron 10.0%
!!! AAGATTTTATTTTTTTATCG+AGG + chr1_1:13287802-13287821 Msa0009090:intron 15.0%
!!! AGATTTTATTTTTTTATCGA+GGG + chr1_1:13287803-13287822 Msa0009090:intron 15.0%
!!! TTCTTGCATTTTTTTTTTTT+TGG + chr1_1:13288259-13288278 Msa0009090:intron 15.0%
!!! TCTTGCATTTTTTTTTTTTT+GGG + chr1_1:13288260-13288279 Msa0009090:intron 15.0%
!!! CTAAGTTTTTTTATTCTTTT+TGG + chr1_1:13289590-13289609 Msa0009090:intron 15.0%
!!! ATAACTACTTTTGTTTTTAT+AGG + chr1_1:13289930-13289949 Msa0009090:intron 15.0%
!! ATTAATAAAAAATGGAAAGA+AGG + chr1_1:13290258-13290277 Msa0009090:CDS 15.0%
!!! AAATTTACTTTTTCAGGAAT+AGG - chr1_1:13286553-13286572 None:intergenic 20.0%
!!! TATCAATTTTTTAATCTGCA+TGG + chr1_1:13286598-13286617 Msa0009090:intron 20.0%
!! ATAATAAAGTAATGTCTATG+TGG + chr1_1:13286851-13286870 Msa0009090:intron 20.0%
!! TAATAAAGTAATGTCTATGT+GGG + chr1_1:13286852-13286871 Msa0009090:intron 20.0%
!! TTATGATTGTAAATTGATGT+CGG + chr1_1:13286921-13286940 Msa0009090:intron 20.0%
!!! TCAATTATTCATTTTTACGT+CGG - chr1_1:13287043-13287062 None:intergenic 20.0%
!! AATAAAAACATCAATCAATG+TGG - chr1_1:13287174-13287193 None:intergenic 20.0%
!!! TAACTGTATTTTCTATTTTG+TGG + chr1_1:13288016-13288035 Msa0009090:intron 20.0%
!!! CTTGCATTTTTTTTTTTTTG+GGG + chr1_1:13288261-13288280 Msa0009090:intron 20.0%
!!! TTGCATTTTTTTTTTTTTGG+GGG + chr1_1:13288262-13288281 Msa0009090:intron 20.0%
!!! AAGTGATTTGCATTTTTTTT+CGG - chr1_1:13288420-13288439 None:intergenic 20.0%
!! TTGTTTGCATTTCTAATTTA+CGG + chr1_1:13288788-13288807 Msa0009090:intron 20.0%
!! TATTAAAAACAAATATGACC+TGG - chr1_1:13289006-13289025 None:intergenic 20.0%
!!! AGCTAACAATTTTATTAGAA+CGG - chr1_1:13289062-13289081 None:intergenic 20.0%
!! GATATATATTTGGCATAATT+TGG - chr1_1:13289218-13289237 None:intergenic 20.0%
!! ATCGAAAAGTGATATATATT+TGG - chr1_1:13289228-13289247 None:intergenic 20.0%
!!! AAATATATATCACTTTTCGA+TGG + chr1_1:13289227-13289246 Msa0009090:CDS 20.0%
!!! TACTTTTGTTTTTATAGGAA+TGG + chr1_1:13289935-13289954 Msa0009090:intron 20.0%
!!! TTAGGATATTTTGCATATTT+TGG + chr1_1:13290110-13290129 Msa0009090:intron 20.0%
!!! TTTTTATTAATCCACTTGAA+TGG - chr1_1:13290249-13290268 None:intergenic 20.0%
!!! TCAAGTGGATTAATAAAAAA+TGG + chr1_1:13290250-13290269 Msa0009090:CDS 20.0%
!!! TATATTGCATCTATTTGTTA+CGG + chr1_1:13290740-13290759 Msa0009090:CDS 20.0%
!! GAACAATAATTAAAATGTGA+AGG + chr1_1:13291064-13291083 Msa0009090:three_prime_UTR 20.0%
!!! ATTTGACCTTATTTTAAAGA+TGG + chr1_1:13291252-13291271 Msa0009090:three_prime_UTR 20.0%
!!! TGTTTTCCATCTTTAAAATA+AGG - chr1_1:13291261-13291280 None:intergenic 20.0%
!!! ATTTTAAAGATGGAAAACAA+TGG + chr1_1:13291262-13291281 Msa0009090:three_prime_UTR 20.0%
!!! AATTTTTTTGTAACAGGTTC+AGG + chr1_1:13286663-13286682 Msa0009090:intron 25.0%
! TGATTGAAAATTGATGTCAA+TGG + chr1_1:13287069-13287088 Msa0009090:intron 25.0%
! TTTCATTCATAATCAAAGTC+TGG + chr1_1:13287219-13287238 Msa0009090:intron 25.0%
! TGTAGGAATATCATAAAAAC+TGG + chr1_1:13287247-13287266 Msa0009090:intron 25.0%
! ATTGTAATAAATGAGCTGAA+AGG - chr1_1:13287660-13287679 None:intergenic 25.0%
! TTGTTTGTATGTAGTGTATT+AGG + chr1_1:13287704-13287723 Msa0009090:intron 25.0%
! TTAACCTGTAATTATATTGC+AGG + chr1_1:13287857-13287876 Msa0009090:intron 25.0%
!! TGTGTCTTGATTTTTATTGT+TGG + chr1_1:13287975-13287994 Msa0009090:intron 25.0%
!! ATTTTCTATTTTGTGGCTTT+AGG + chr1_1:13288023-13288042 Msa0009090:intron 25.0%
! AATAAATCAAAAACAGGATC+AGG - chr1_1:13288134-13288153 None:intergenic 25.0%
!!! TCCTGTTTTTGATTTATTTG+TGG + chr1_1:13288136-13288155 Msa0009090:intron 25.0%
! TCCACAAATAAATCAAAAAC+AGG - chr1_1:13288140-13288159 None:intergenic 25.0%
!!! ATTTTTTTTTTTTTGGGGGT+GGG + chr1_1:13288266-13288285 Msa0009090:intron 25.0%
! TCAACTCAACTTAAATTAGT+TGG + chr1_1:13288359-13288378 Msa0009090:intron 25.0%
! CAACTCAACTTAAATTAGTT+GGG + chr1_1:13288360-13288379 Msa0009090:intron 25.0%
! AACTCAACTTAAATTAGTTG+GGG + chr1_1:13288361-13288380 Msa0009090:intron 25.0%
! TAATAAAATTGTTAGCTGCA+GGG + chr1_1:13289065-13289084 Msa0009090:intron 25.0%
! ATTTAGAGATTACTGTTTAC+AGG + chr1_1:13289322-13289341 Msa0009090:intron 25.0%
! TGTTGTTAAGCTTATTTATC+AGG + chr1_1:13289383-13289402 Msa0009090:intron 25.0%
! TGAAGTTAAATGAGTCTTTA+TGG + chr1_1:13289545-13289564 Msa0009090:intron 25.0%
!!! TTTTTTTATTCTTTTTGGCC+AGG + chr1_1:13289595-13289614 Msa0009090:intron 25.0%
! AAAAAATAACAACCTTGTGA+AGG - chr1_1:13289785-13289804 None:intergenic 25.0%
! TAATGTATTCTTCACAGTAT+TGG + chr1_1:13289881-13289900 Msa0009090:intron 25.0%
!!! GTTTTTATAGGAATGGATTA+TGG + chr1_1:13289942-13289961 Msa0009090:intron 25.0%
! TAAATTGACTGGATTGTATT+AGG + chr1_1:13290092-13290111 Msa0009090:intron 25.0%
!!! TCTCTTCTAAAATTAATTCC+AGG + chr1_1:13290430-13290449 Msa0009090:intron 25.0%
! TTCATGATTAAAGAAGACTA+TGG - chr1_1:13290672-13290691 None:intergenic 25.0%
!!! ATGTTTGATGTTATTTTTGC+AGG + chr1_1:13290697-13290716 Msa0009090:intron 25.0%
!!! TGTTATTTTTGCAGGAAAAA+TGG + chr1_1:13290705-13290724 Msa0009090:intron 25.0%
!!! GTTATTTTTGCAGGAAAAAT+GGG + chr1_1:13290706-13290725 Msa0009090:intron 25.0%
! AACAAATAGATGCAATATAG+AGG - chr1_1:13290739-13290758 None:intergenic 25.0%
! TGTATGCATAACTTATTATG+TGG + chr1_1:13290913-13290932 Msa0009090:three_prime_UTR 25.0%
! CATCATATGATTAGTGATTA+CGG - chr1_1:13290939-13290958 None:intergenic 25.0%
!!! AAATGTGAAGGTATTTACTT+AGG + chr1_1:13291076-13291095 Msa0009090:three_prime_UTR 25.0%
!!! GTTTTGTTGTTTGGTTTTTC+TGG - chr1_1:13286239-13286258 None:intergenic 30.0%
TTCTGATAAGCAAGAGATTA+TGG + chr1_1:13286450-13286469 Msa0009090:CDS 30.0%
!!! TTTACTTTTTCAGGAATAGG+CGG - chr1_1:13286550-13286569 None:intergenic 30.0%
TTTCTATCTACTCTGTACAT+CGG - chr1_1:13286700-13286719 None:intergenic 30.0%
!! TCATTTTTACGTCGGATATT+AGG - chr1_1:13287035-13287054 None:intergenic 30.0%
ACAACATCATACTTATATGG+CGG - chr1_1:13287128-13287147 None:intergenic 30.0%
ACCACAACATCATACTTATA+TGG - chr1_1:13287131-13287150 None:intergenic 30.0%
GTAAATAAAAGAGAGAACAC+CGG + chr1_1:13287444-13287463 Msa0009090:intron 30.0%
! TTGTGCAATGAATAATTTGC+AGG + chr1_1:13287541-13287560 Msa0009090:intron 30.0%
TTTGAGCATAAAACCAGTAA+AGG + chr1_1:13287575-13287594 Msa0009090:CDS 30.0%
TTGAGCATAAAACCAGTAAA+GGG + chr1_1:13287576-13287595 Msa0009090:CDS 30.0%
TTTGTATGTAGTGTATTAGG+AGG + chr1_1:13287707-13287726 Msa0009090:intron 30.0%
!!! TTATTTTTTTATCGAGGGCT+AGG + chr1_1:13287808-13287827 Msa0009090:intron 30.0%
!!! TATTTTTTTATCGAGGGCTA+GGG + chr1_1:13287809-13287828 Msa0009090:intron 30.0%
ATGACCTGCAATATAATTAC+AGG - chr1_1:13287864-13287883 None:intergenic 30.0%
TGTAATTATATTGCAGGTCA+TGG + chr1_1:13287863-13287882 Msa0009090:intron 30.0%
AGAATGCATCTTCTCTAATA+TGG - chr1_1:13288092-13288111 None:intergenic 30.0%
!!! CATTTTTTTTTTTTTGGGGG+TGG + chr1_1:13288265-13288284 Msa0009090:intron 30.0%
!!! TTTTTTTTTTTTTGGGGGTG+GGG + chr1_1:13288267-13288286 Msa0009090:intron 30.0%
! AAGCTTTTTGTGTCCTTATT+AGG + chr1_1:13288336-13288355 Msa0009090:intron 30.0%
!! TAAGTTGAGTTGACCTAATA+AGG - chr1_1:13288352-13288371 None:intergenic 30.0%
!! TGAAGAGAAAAAGCTTTTTC+TGG + chr1_1:13288568-13288587 Msa0009090:CDS 30.0%
ACAAGTTACCTAAATACATC+TGG - chr1_1:13288772-13288791 None:intergenic 30.0%
! GAATTTTCTGATCAAAATCC+AGG + chr1_1:13288812-13288831 Msa0009090:intron 30.0%
CTAATAAAATTGTTAGCTGC+AGG + chr1_1:13289064-13289083 Msa0009090:intron 30.0%
! TCTTGTTTGCAAGAAGAAAA+TGG + chr1_1:13289103-13289122 Msa0009090:CDS 30.0%
! TCTTGTTGCTAATATTTTCC+TGG + chr1_1:13289356-13289375 Msa0009090:intron 30.0%
GTTAAGCTTATTTATCAGGT+TGG + chr1_1:13289387-13289406 Msa0009090:intron 30.0%
ATTACAATGTTGCTGATATG+CGG + chr1_1:13289622-13289641 Msa0009090:CDS 30.0%
AAATGATTCACTGACCTTAT+AGG - chr1_1:13290226-13290245 None:intergenic 30.0%
AGAAGAGAAAACATCACATA+TGG - chr1_1:13290418-13290437 None:intergenic 30.0%
CTAAAATTAATTCCAGGTTG+TGG + chr1_1:13290436-13290455 Msa0009090:intron 30.0%
!!! TAGATCATTTTTTGTCAACC+TGG + chr1_1:13291010-13291029 Msa0009090:three_prime_UTR 30.0%
!!! AGATCATTTTTTGTCAACCT+GGG + chr1_1:13291011-13291030 Msa0009090:three_prime_UTR 30.0%
AGTCTTGATAGAAAGTTTGT+AGG + chr1_1:13291036-13291055 Msa0009090:three_prime_UTR 30.0%
GTCTTGATAGAAAGTTTGTA+GGG + chr1_1:13291037-13291056 Msa0009090:three_prime_UTR 30.0%
TCTTGATAGAAAGTTTGTAG+GGG + chr1_1:13291038-13291057 Msa0009090:three_prime_UTR 30.0%
!! TGAAGGTATTTACTTAGGTT+AGG + chr1_1:13291081-13291100 Msa0009090:three_prime_UTR 30.0%
! AGGTTAGGTTTGTTTATTGA+TGG + chr1_1:13291096-13291115 Msa0009090:three_prime_UTR 30.0%
CTTAAAGACTTCAAAAGGAA+AGG - chr1_1:13291206-13291225 None:intergenic 30.0%
AGTAGCTTAAAGACTTCAAA+AGG - chr1_1:13291211-13291230 None:intergenic 30.0%
!!! GTTTCATGGAGTTTTGTTTC+TGG - chr1_1:13286167-13286186 None:intergenic 35.0%
! AGGAGGCATGTTAATCTTTA+AGG - chr1_1:13286206-13286225 None:intergenic 35.0%
!! TCAGAAACCCTAATTTGTTC+CGG - chr1_1:13286436-13286455 None:intergenic 35.0%
!!! TTTTTTGTAACAGGTTCAGG+TGG + chr1_1:13286666-13286685 Msa0009090:intron 35.0%
! TTTTTGTAACAGGTTCAGGT+GGG + chr1_1:13286667-13286686 Msa0009090:intron 35.0%
TACAGAGTAGATAGAAAGCT+AGG + chr1_1:13286703-13286722 Msa0009090:CDS 35.0%
ACAGAGTAGATAGAAAGCTA+GGG + chr1_1:13286704-13286723 Msa0009090:CDS 35.0%
!!! GGTTTTGGACAAGTTTATGT+TGG + chr1_1:13286733-13286752 Msa0009090:CDS 35.0%
!! TTGATGTCGGTGTTATTGAT+TGG + chr1_1:13286934-13286953 Msa0009090:intron 35.0%
ATCTGTATCACATTCACCAT+AGG - chr1_1:13287008-13287027 None:intergenic 35.0%
! ATTGATGTCAATGGTAACGA+TGG + chr1_1:13287078-13287097 Msa0009090:intron 35.0%
GCCATATAAGTATGATGTTG+TGG + chr1_1:13287127-13287146 Msa0009090:intron 35.0%
ATCAAAGTCTGGATACATGT+AGG + chr1_1:13287230-13287249 Msa0009090:intron 35.0%
TGGAGAACTAGCATTATATG+TGG + chr1_1:13287267-13287286 Msa0009090:intron 35.0%
TGCAAGGAGACAAACTAATA+CGG - chr1_1:13287318-13287337 None:intergenic 35.0%
TGTTATTACCAACTCTCATG+TGG - chr1_1:13287345-13287364 None:intergenic 35.0%
GGTAATAACAGTTGCTTGTT+TGG + chr1_1:13287355-13287374 Msa0009090:intron 35.0%
!!! CAATCAATGCTTGCTTTTTG+AGG - chr1_1:13287387-13287406 None:intergenic 35.0%
!!! ACCGGTGCATTCTTTTTTAA+TGG + chr1_1:13287462-13287481 Msa0009090:intron 35.0%
CCCATTAAAAAAGAATGCAC+CGG - chr1_1:13287466-13287485 None:intergenic 35.0%
!!! CCGGTGCATTCTTTTTTAAT+GGG + chr1_1:13287463-13287482 Msa0009090:intron 35.0%
ACTGCAAATTACACACACTA+AGG - chr1_1:13287505-13287524 None:intergenic 35.0%
! TTAGTGTGTGTAATTTGCAG+TGG + chr1_1:13287504-13287523 Msa0009090:intron 35.0%
! TGCAATGAATAATTTGCAGG+TGG + chr1_1:13287544-13287563 Msa0009090:intron 35.0%
! ACCAGTAAAGGGTGTAATTA+TGG + chr1_1:13287587-13287606 Msa0009090:CDS 35.0%
TCCATAATTACACCCTTTAC+TGG - chr1_1:13287591-13287610 None:intergenic 35.0%
!!! ATTTTTTTATCGAGGGCTAG+GGG + chr1_1:13287810-13287829 Msa0009090:intron 35.0%
ATATTCTTGGCCCTAGTTTA+TGG + chr1_1:13287886-13287905 Msa0009090:CDS 35.0%
TATTCTTGGCCCTAGTTTAT+GGG + chr1_1:13287887-13287906 Msa0009090:CDS 35.0%
TCCAAACATCCCATAAACTA+GGG - chr1_1:13287899-13287918 None:intergenic 35.0%
TTCCAAACATCCCATAAACT+AGG - chr1_1:13287900-13287919 None:intergenic 35.0%
TTAGAGAAGATGCATTCTAG+AGG + chr1_1:13288094-13288113 Msa0009090:CDS 35.0%
TAGAGAAGATGCATTCTAGA+GGG + chr1_1:13288095-13288114 Msa0009090:CDS 35.0%
! GTGGATTTTTCATTACTGTG+CGG + chr1_1:13288155-13288174 Msa0009090:intron 35.0%
! TTTTTCATTACTGTGCGGAT+TGG + chr1_1:13288160-13288179 Msa0009090:intron 35.0%
!!! TTTTTTTTTTTTGGGGGTGG+GGG + chr1_1:13288268-13288287 Msa0009090:intron 35.0%
AATCTAGGTACACACACTAT+GGG - chr1_1:13288316-13288335 None:intergenic 35.0%
TAATCTAGGTACACACACTA+TGG - chr1_1:13288317-13288336 None:intergenic 35.0%
GGACACAAAAAGCTTAATCT+AGG - chr1_1:13288331-13288350 None:intergenic 35.0%
AAATTAGTTGGGGTCTAATG+TGG + chr1_1:13288371-13288390 Msa0009090:intron 35.0%
!!! TTTTTTCGGTTTTAGACCCA+CGG - chr1_1:13288406-13288425 None:intergenic 35.0%
ATTTGTTTCAGATACGTGCA+TGG + chr1_1:13288500-13288519 Msa0009090:intron 35.0%
! AAACCTGAGAACTTTTTGCT+TGG + chr1_1:13288530-13288549 Msa0009090:CDS 35.0%
! TTTTTCTCTTCATGAGTTCC+CGG - chr1_1:13288560-13288579 None:intergenic 35.0%
!!! AAGCTTTTTCTGGTTGATCT+TGG + chr1_1:13288578-13288597 Msa0009090:CDS 35.0%
!! TTTCTGGTTGATCTTGGTTT+AGG + chr1_1:13288584-13288603 Msa0009090:CDS 35.0%
! GTGTAAGTACCAACTTTTCT+GGG - chr1_1:13288626-13288645 None:intergenic 35.0%
! AGTGTAAGTACCAACTTTTC+TGG - chr1_1:13288627-13288646 None:intergenic 35.0%
ATCAACGTCCAGATGTATTT+AGG + chr1_1:13288761-13288780 Msa0009090:CDS 35.0%
ATTGCCATATTCTTGCAACA+GGG + chr1_1:13288856-13288875 Msa0009090:intron 35.0%
! ACACTAATTTTCCTTCTTCG+CGG + chr1_1:13288959-13288978 Msa0009090:CDS 35.0%
! CAGAGGATACACATATTTTC+TGG - chr1_1:13289137-13289156 None:intergenic 35.0%
AACTCAATAAACTGCCGAAA+AGG - chr1_1:13289167-13289186 None:intergenic 35.0%
!! TCACTTTTCGATGGAATTGT+TGG + chr1_1:13289236-13289255 Msa0009090:CDS 35.0%
ATTAGACCCATAAACACTGA+CGG + chr1_1:13289272-13289291 Msa0009090:CDS 35.0%
AGATTACTGTTTACAGGTGA+GGG + chr1_1:13289328-13289347 Msa0009090:intron 35.0%
TAAGCTTAACAACACAAACC+AGG - chr1_1:13289377-13289396 None:intergenic 35.0%
CCAAAGAAGAAAGTCAGAAT+GGG + chr1_1:13289456-13289475 Msa0009090:CDS 35.0%
AAAACCTTTGCTTCATAGGT+CGG - chr1_1:13289521-13289540 None:intergenic 35.0%
GAAGAAAACCTTTGCTTCAT+AGG - chr1_1:13289525-13289544 None:intergenic 35.0%
!! GTCTCTGATCATTTTAACAC+TGG - chr1_1:13289571-13289590 None:intergenic 35.0%
GCATATCAGCAACATTGTAA+TGG - chr1_1:13289623-13289642 None:intergenic 35.0%
! ATATCCCTTTTCGATGTGTT+GGG - chr1_1:13289652-13289671 None:intergenic 35.0%
ATCGAAAAGGGATATGAAGA+TGG + chr1_1:13289657-13289676 Msa0009090:CDS 35.0%
TCGAAAAGGGATATGAAGAT+GGG + chr1_1:13289658-13289677 Msa0009090:CDS 35.0%
GGGTTATTTATCAGTAGTGT+AGG + chr1_1:13289678-13289697 Msa0009090:CDS 35.0%
! TAGGTTGTTGTTCTAACCTT+TGG + chr1_1:13289697-13289716 Msa0009090:CDS 35.0%
! AGGTTGTTGTTCTAACCTTT+GGG + chr1_1:13289698-13289717 Msa0009090:CDS 35.0%
! TTCTTCACAGTATTGGAACT+TGG + chr1_1:13289888-13289907 Msa0009090:intron 35.0%
TATTACATTAGTGCCATAGC+AGG + chr1_1:13289982-13290001 Msa0009090:CDS 35.0%
! TCGTTGGTTGTAATGTCAAA+AGG + chr1_1:13290021-13290040 Msa0009090:CDS 35.0%
TCGTTAAAGCTCTATTCTTC+AGG + chr1_1:13290048-13290067 Msa0009090:intron 35.0%
! TCTTCAGGCATTTGGTATTT+TGG + chr1_1:13290063-13290082 Msa0009090:intron 35.0%
ATAGGATTGCTGCAAGTATT+GGG - chr1_1:13290208-13290227 None:intergenic 35.0%
TATAGGATTGCTGCAAGTAT+TGG - chr1_1:13290209-13290228 None:intergenic 35.0%
ATACTTGCAGCAATCCTATA+AGG + chr1_1:13290209-13290228 Msa0009090:CDS 35.0%
GTGAATCATTTCCATTCAAG+TGG + chr1_1:13290235-13290254 Msa0009090:CDS 35.0%
! GATTTTCTGTATCCTAGTGA+AGG + chr1_1:13290464-13290483 Msa0009090:CDS 35.0%
GTTTCTTGAGTTTCATCAGT+CGG - chr1_1:13290584-13290603 None:intergenic 35.0%
TTTACCTTGACATGAGTACT+AGG - chr1_1:13290626-13290645 None:intergenic 35.0%
ACACTGCTTTCTCTTAAATC+TGG + chr1_1:13290829-13290848 Msa0009090:three_prime_UTR 35.0%
!!! CTCTTAAATCTGGCTAGTTT+TGG + chr1_1:13290839-13290858 Msa0009090:three_prime_UTR 35.0%
ATGCATACATCAATGCAGAA+GGG - chr1_1:13290902-13290921 None:intergenic 35.0%
TATGCATACATCAATGCAGA+AGG - chr1_1:13290903-13290922 None:intergenic 35.0%
TCAAAAGGAAAGGAGAAAAG+AGG - chr1_1:13291196-13291215 None:intergenic 35.0%
TGAAGTCTTTAAGCTACTTC+TGG + chr1_1:13291213-13291232 Msa0009090:three_prime_UTR 35.0%
GTCAAATTCAGAAATCCAAG+AGG - chr1_1:13291239-13291258 None:intergenic 35.0%
ACTCCATGAAACACTCTTCA+TGG + chr1_1:13286175-13286194 Msa0009090:five_prime_UTR 40.0%
!!! GTTTTTCTGGTTCGAAGTTG+AGG - chr1_1:13286226-13286245 None:intergenic 40.0%
!!! TTCGGGTTTTGATTCGGATT+CGG - chr1_1:13286262-13286281 None:intergenic 40.0%
!!! GTGTTGTTACGGTTTTTAGC+AGG - chr1_1:13286331-13286350 None:intergenic 40.0%
ATGGATGATGACTGTGATAG+CGG + chr1_1:13286469-13286488 Msa0009090:CDS 40.0%
GTAGATAGAAAGCTAGGGAA+AGG + chr1_1:13286709-13286728 Msa0009090:CDS 40.0%
GTTTATGTTGGTCGTCGTAT+TGG + chr1_1:13286745-13286764 Msa0009090:CDS 40.0%
!! TCGGTGTTATTGATTGGAGT+TGG + chr1_1:13286940-13286959 Msa0009090:intron 40.0%
! GTGTTATTGATTGGAGTTGG+CGG + chr1_1:13286943-13286962 Msa0009090:intron 40.0%
! TGTTATTGATTGGAGTTGGC+GGG + chr1_1:13286944-13286963 Msa0009090:intron 40.0%
ACAACACTGTACTTGTATGG+CGG - chr1_1:13286983-13287002 None:intergenic 40.0%
! TCAATGGTAACGATGGTAGA+TGG + chr1_1:13287085-13287104 Msa0009090:intron 40.0%
!! GCTCAAGCTTTAAGCAAAAG+TGG - chr1_1:13287293-13287312 None:intergenic 40.0%
TTGCAGGTCATGGATATTCT+TGG + chr1_1:13287873-13287892 Msa0009090:intron 40.0%
!! CTTTAGGATGTCTGCTGAAA+TGG + chr1_1:13288039-13288058 Msa0009090:intron 40.0%
TTGGATATAGCTGGCATCTT+TGG + chr1_1:13288179-13288198 Msa0009090:intron 40.0%
!!! TTTTTTTTTTTGGGGGTGGG+GGG + chr1_1:13288269-13288288 Msa0009090:intron 40.0%
TCTGATCAAAATCCAGGCTT+TGG + chr1_1:13288818-13288837 Msa0009090:intron 40.0%
GATTGCCATATTCTTGCAAC+AGG + chr1_1:13288855-13288874 Msa0009090:intron 40.0%
TTGCCATATTCTTGCAACAG+GGG + chr1_1:13288857-13288876 Msa0009090:intron 40.0%
AGGTAGCAGAAGAGATGATT+TGG + chr1_1:13288922-13288941 Msa0009090:CDS 40.0%
! TAATTTTCCTTCTTCGCGGA+CGG + chr1_1:13288963-13288982 Msa0009090:CDS 40.0%
TAGCTGCAGGGTGAAAATAA+AGG + chr1_1:13289077-13289096 Msa0009090:intron 40.0%
!! GATACACATATTTTCTGGCG+AGG - chr1_1:13289132-13289151 None:intergenic 40.0%
AATAAACTGCCGAAAAGGTG+CGG - chr1_1:13289162-13289181 None:intergenic 40.0%
ATGGGTCTAATGTCTGGATT+TGG - chr1_1:13289263-13289282 None:intergenic 40.0%
GTGTTTATGGGTCTAATGTC+TGG - chr1_1:13289269-13289288 None:intergenic 40.0%
GAGATTACTGTTTACAGGTG+AGG + chr1_1:13289327-13289346 Msa0009090:intron 40.0%
GCCAAAGAAGAAAGTCAGAA+TGG + chr1_1:13289455-13289474 Msa0009090:CDS 40.0%
CCCATTCTGACTTTCTTCTT+TGG - chr1_1:13289459-13289478 None:intergenic 40.0%
ACACTAATCCATTGTGTTGC+TGG - chr1_1:13289486-13289505 None:intergenic 40.0%
AGCAACATTGTAATGGTACC+TGG - chr1_1:13289616-13289635 None:intergenic 40.0%
TTGTCCCAACACATCGAAAA+GGG + chr1_1:13289645-13289664 Msa0009090:CDS 40.0%
! CATATCCCTTTTCGATGTGT+TGG - chr1_1:13289653-13289672 None:intergenic 40.0%
!! TAACCTTTGGGCACTGATTA+TGG + chr1_1:13289710-13289729 Msa0009090:CDS 40.0%
AACAACCTTGTGAAGGAAGA+AGG - chr1_1:13289778-13289797 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG + chr1_1:13289950-13289969 Msa0009090:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG + chr1_1:13289951-13289970 Msa0009090:intron 40.0%
CCATAGCAGGATCTAATAGT+GGG + chr1_1:13289995-13290014 Msa0009090:CDS 40.0%
AGCTCTATTCTTCAGGCATT+TGG + chr1_1:13290055-13290074 Msa0009090:intron 40.0%
TTTGGCGACAGTAAATTGAC+TGG + chr1_1:13290081-13290100 Msa0009090:intron 40.0%
ACTATGTCTCTCACTTCTAC+TGG + chr1_1:13290162-13290181 Msa0009090:intron 40.0%
! CACTTCTACTGGTGATTTGT+TGG + chr1_1:13290173-13290192 Msa0009090:intron 40.0%
!! ACTGGTGATTTGTTGGTTTC+AGG + chr1_1:13290180-13290199 Msa0009090:intron 40.0%
!! CTGGTGATTTGTTGGTTTCA+GGG + chr1_1:13290181-13290200 Msa0009090:intron 40.0%
! AGGATTTTTCGTCACTGCTA+TGG + chr1_1:13290278-13290297 Msa0009090:CDS 40.0%
CTTCGATGAATACCTTCACT+AGG - chr1_1:13290479-13290498 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG + chr1_1:13290477-13290496 Msa0009090:CDS 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG + chr1_1:13290481-13290500 Msa0009090:CDS 40.0%
TAGCAGCAGTTGAAGTAATG+CGG - chr1_1:13290517-13290536 None:intergenic 40.0%
!! TCATCAGTCGGTTTTCTTCT+TGG - chr1_1:13290572-13290591 None:intergenic 40.0%
CTTTCCTAGTACTCATGTCA+AGG + chr1_1:13290619-13290638 Msa0009090:CDS 40.0%
CTGAATCTCAGAAAGCTTCA+CGG - chr1_1:13290783-13290802 None:intergenic 40.0%
!!! AATCTGGCTAGTTTTGGAAC+TGG + chr1_1:13290845-13290864 Msa0009090:three_prime_UTR 40.0%
GCTACTATAAGTTTCCAGTG+TGG + chr1_1:13291133-13291152 Msa0009090:three_prime_UTR 40.0%
!! GCTCCATGAAGAGTGTTTCA+TGG - chr1_1:13286181-13286200 None:intergenic 45.0%
!! TTTCTGGTTCGAAGTTGAGG+AGG - chr1_1:13286223-13286242 None:intergenic 45.0%
!!! CGGATTCGGGTTTTGTTGTT+TGG - chr1_1:13286248-13286267 None:intergenic 45.0%
!!! TCGGGTTTTGATTCGGATTC+GGG - chr1_1:13286261-13286280 None:intergenic 45.0%
!!! ATCGGGTTCGGGTTTTGATT+CGG - chr1_1:13286268-13286287 None:intergenic 45.0%
TTGTACTTGATCACGTGCAG+CGG - chr1_1:13286365-13286384 None:intergenic 45.0%
TCACGTGCCGGAACAAATTA+GGG + chr1_1:13286426-13286445 Msa0009090:CDS 45.0%
GATAGAAAGCTAGGGAAAGG+AGG + chr1_1:13286712-13286731 Msa0009090:CDS 45.0%
! AAGCTAGGGAAAGGAGGTTT+TGG + chr1_1:13286718-13286737 Msa0009090:CDS 45.0%
CTATCATACCTCAACAGCAC+CGG - chr1_1:13286779-13286798 None:intergenic 45.0%
GCCATACAAGTACAGTGTTG+TGG + chr1_1:13286982-13287001 Msa0009090:intron 45.0%
GCCACAACACTGTACTTGTA+TGG - chr1_1:13286986-13287005 None:intergenic 45.0%
AAGTACAGTGTTGTGGCCTA+TGG + chr1_1:13286989-13287008 Msa0009090:intron 45.0%
! ATGGTAACGATGGTAGATGG+CGG + chr1_1:13287088-13287107 Msa0009090:intron 45.0%
ACTCTCATGTGGAGTTTGCA+AGG - chr1_1:13287334-13287353 None:intergenic 45.0%
TGCAAACTCCACATGAGAGT+TGG + chr1_1:13287334-13287353 Msa0009090:intron 45.0%
ATTATGGACCTCCTTACGAG+TGG + chr1_1:13287603-13287622 Msa0009090:CDS 45.0%
TTGTAAACCTGCCACTCGTA+AGG - chr1_1:13287617-13287636 None:intergenic 45.0%
AGTGTATTAGGAGGTAGCCA+TGG + chr1_1:13287716-13287735 Msa0009090:intron 45.0%
TGTCCCACGAGTTCATTACA+AGG + chr1_1:13287739-13287758 Msa0009090:CDS 45.0%
GTCCCACGAGTTCATTACAA+GGG + chr1_1:13287740-13287759 Msa0009090:CDS 45.0%
GTCCCTTGTAATGAACTCGT+GGG - chr1_1:13287745-13287764 None:intergenic 45.0%
CACGAGTTCATTACAAGGGA+CGG + chr1_1:13287744-13287763 Msa0009090:CDS 45.0%
GCAAGGTGATTGGTATGTCA+TGG + chr1_1:13287766-13287785 Msa0009090:CDS 45.0%
GCCCTAGTTTATGGGATGTT+TGG + chr1_1:13287895-13287914 Msa0009090:CDS 45.0%
!!! TTTTTTTTTTGGGGGTGGGG+GGG + chr1_1:13288270-13288289 Msa0009090:intron 45.0%
TTGGGGTCTAATGTGGCTTT+AGG + chr1_1:13288378-13288397 Msa0009090:intron 45.0%
!! TAATGTGGCTTTAGGATCCG+TGG + chr1_1:13288386-13288405 Msa0009090:intron 45.0%
!! AATGTGGCTTTAGGATCCGT+GGG + chr1_1:13288387-13288406 Msa0009090:intron 45.0%
TCTACCTTGCCCAGAAAAGT+TGG + chr1_1:13288614-13288633 Msa0009090:intron 45.0%
! AGTACCAACTTTTCTGGGCA+AGG - chr1_1:13288621-13288640 None:intergenic 45.0%
CGTCAAAATCAACCAAAGCC+TGG - chr1_1:13288833-13288852 None:intergenic 45.0%
GTTCCCCTGTTGCAAGAATA+TGG - chr1_1:13288863-13288882 None:intergenic 45.0%
GCTAGTGTACATGCTCATCT+TGG + chr1_1:13288893-13288912 Msa0009090:CDS 45.0%
GTGTACATGCTCATCTTGGT+AGG + chr1_1:13288897-13288916 Msa0009090:CDS 45.0%
!! ACACATATTTTCTGGCGAGG+TGG - chr1_1:13289129-13289148 None:intergenic 45.0%
! ATAAACTGCCGAAAAGGTGC+GGG - chr1_1:13289161-13289180 None:intergenic 45.0%
TCGGCAGTTTATTGAGTTCG+TGG + chr1_1:13289169-13289188 Msa0009090:CDS 45.0%
! TGAGCACCGTCAGTGTTTAT+GGG - chr1_1:13289281-13289300 None:intergenic 45.0%
!! TATCAGGTTGGACAGAAGAG+AGG + chr1_1:13289399-13289418 Msa0009090:intron 45.0%
CTCATCATCATCTCCTTCCA+TGG - chr1_1:13289433-13289452 None:intergenic 45.0%
GTTGTCCCAACACATCGAAA+AGG + chr1_1:13289644-13289663 Msa0009090:CDS 45.0%
CATCCATAATCAGTGCCCAA+AGG - chr1_1:13289716-13289735 None:intergenic 45.0%
CTCATCCTTCTTCCTTCACA+AGG + chr1_1:13289770-13289789 Msa0009090:CDS 45.0%
GCCATAGCAGGATCTAATAG+TGG + chr1_1:13289994-13290013 Msa0009090:CDS 45.0%
CCCACTATTAGATCCTGCTA+TGG - chr1_1:13289998-13290017 None:intergenic 45.0%
! ATCTAATAGTGGGAGCTCGT+TGG + chr1_1:13290005-13290024 Msa0009090:CDS 45.0%
AGTGAGAGACATAGTCACAC+AGG - chr1_1:13290157-13290176 None:intergenic 45.0%
ATCTGAAAATCCAGCACCAC+GGG - chr1_1:13290337-13290356 None:intergenic 45.0%
GATCTGAAAATCCAGCACCA+CGG - chr1_1:13290338-13290357 None:intergenic 45.0%
!! TGGTGCTGGATTTTCAGATC+AGG + chr1_1:13290338-13290357 Msa0009090:CDS 45.0%
GAAAATCAAGCTCCACAACC+TGG - chr1_1:13290451-13290470 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG + chr1_1:13290480-13290499 Msa0009090:CDS 45.0%
ATTCATCGAAGGTGGGACAA+TGG + chr1_1:13290488-13290507 Msa0009090:CDS 45.0%
AACTGCTGCTACATATGACC+AGG + chr1_1:13290526-13290545 Msa0009090:CDS 45.0%
TACTAAGAACAAGAGCAGCC+TGG - chr1_1:13290547-13290566 None:intergenic 45.0%
ATCCTCTCTGACAAGTTTGC+CGG + chr1_1:13290870-13290889 Msa0009090:three_prime_UTR 45.0%
CAATGCAGAAGGGATTTGTC+CGG - chr1_1:13290892-13290911 None:intergenic 45.0%
CTTTCTATCAAGACTCACCC+AGG - chr1_1:13291031-13291050 None:intergenic 45.0%
TCAGCTGTGCATCTTGAACT+TGG + chr1_1:13291169-13291188 Msa0009090:three_prime_UTR 45.0%
TTAAGCTACTTCTGGCCTCT+TGG + chr1_1:13291221-13291240 Msa0009090:three_prime_UTR 45.0%
TTCACCCTCTCTATCTGCGT+CGG + chr1_1:13286081-13286100 Msa0009090:five_prime_UTR 50.0%
AGAACCGACGCAGATAGAGA+GGG - chr1_1:13286088-13286107 None:intergenic 50.0%
TAGAACCGACGCAGATAGAG+AGG - chr1_1:13286089-13286108 None:intergenic 50.0%
CTGGAAGATTCGAACGACGA+CGG - chr1_1:13286148-13286167 None:intergenic 50.0%
ACCTCTTCTACCTCGTGTAG+CGG - chr1_1:13286305-13286324 None:intergenic 50.0%
AAACGAACAACCTCACGTGC+CGG + chr1_1:13286414-13286433 Msa0009090:CDS 50.0%
!! CTAATTTGTTCCGGCACGTG+AGG - chr1_1:13286427-13286446 None:intergenic 50.0%
CTCACGTGCCGGAACAAATT+AGG + chr1_1:13286425-13286444 Msa0009090:CDS 50.0%
!! GATGATGACTGTGATAGCGG+CGG + chr1_1:13286472-13286491 Msa0009090:CDS 50.0%
AACCGCAGCTGATAAAGGTC+CGG + chr1_1:13286501-13286520 Msa0009090:CDS 50.0%
AACCGGACCTTTATCAGCTG+CGG - chr1_1:13286506-13286525 None:intergenic 50.0%
GTCCGGTTGCTGAAGATGAA+GGG + chr1_1:13286518-13286537 Msa0009090:CDS 50.0%
CTCCCTTCATCTTCAGCAAC+CGG - chr1_1:13286523-13286542 None:intergenic 50.0%
TTGTAACAGGTTCAGGTGGG+TGG + chr1_1:13286670-13286689 Msa0009090:intron 50.0%
! TGGTAACGATGGTAGATGGC+GGG + chr1_1:13287089-13287108 Msa0009090:intron 50.0%
TAAACCTGCCACTCGTAAGG+AGG - chr1_1:13287614-13287633 None:intergenic 50.0%
GGCAGGTTTACAAGTGAGTG+TGG + chr1_1:13287624-13287643 Msa0009090:intron 50.0%
AATGAACTCGTGGGACACCA+TGG - chr1_1:13287736-13287755 None:intergenic 50.0%
CGTCCCTTGTAATGAACTCG+TGG - chr1_1:13287746-13287765 None:intergenic 50.0%
GTTCATTACAAGGGACGGCA+AGG + chr1_1:13287749-13287768 Msa0009090:CDS 50.0%
CGTAAGTTCATCTCTCGTGC+TGG + chr1_1:13287934-13287953 Msa0009090:intron 50.0%
! GGTGTCGTGTATAGCAATCG+AGG + chr1_1:13288060-13288079 Msa0009090:CDS 50.0%
!! CTGTGCGGATTGGATATAGC+TGG + chr1_1:13288170-13288189 Msa0009090:intron 50.0%
GGCAATTTCAGTTGCCAGAC+TGG + chr1_1:13288200-13288219 Msa0009090:intron 50.0%
GGGCCAAGCAAAAAGTTCTC+AGG - chr1_1:13288536-13288555 None:intergenic 50.0%
! GAACTTTTTGCTTGGCCCTC+CGG + chr1_1:13288538-13288557 Msa0009090:CDS 50.0%
! AACTTTTTGCTTGGCCCTCC+GGG + chr1_1:13288539-13288558 Msa0009090:CDS 50.0%
TCTCTTCATGAGTTCCCGGA+GGG - chr1_1:13288556-13288575 None:intergenic 50.0%
TTCTCTTCATGAGTTCCCGG+AGG - chr1_1:13288557-13288576 None:intergenic 50.0%
TTTGCCATGCAGCAACTCGT+TGG + chr1_1:13288704-13288723 Msa0009090:intron 50.0%
CGTTGGCGTGATAATTCGAC+TGG + chr1_1:13288721-13288740 Msa0009090:CDS 50.0%
CATGCTCATCTTGGTAGGAC+AGG + chr1_1:13288902-13288921 Msa0009090:CDS 50.0%
ATGACCTGGTATCCTTGCCA+GGG - chr1_1:13288992-13289011 None:intergenic 50.0%
TATGACCTGGTATCCTTGCC+AGG - chr1_1:13288993-13289012 None:intergenic 50.0%
! CTGAGCACCGTCAGTGTTTA+TGG - chr1_1:13289282-13289301 None:intergenic 50.0%
AAACACTGACGGTGCTCAGA+AGG + chr1_1:13289283-13289302 Msa0009090:CDS 50.0%
AGGTTGGACAGAAGAGAGGA+CGG + chr1_1:13289403-13289422 Msa0009090:intron 50.0%
TGGGAATGCCAGCAACACAA+TGG + chr1_1:13289475-13289494 Msa0009090:CDS 50.0%
!! TGGGCACTGATTATGGATGC+CGG + chr1_1:13289717-13289736 Msa0009090:CDS 50.0%
TTGTGCAGTGAAACCAGTGC+CGG - chr1_1:13289739-13289758 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG + chr1_1:13290318-13290337 Msa0009090:CDS 50.0%
ATTGTTATGTCCCGTGGTGC+TGG + chr1_1:13290324-13290343 Msa0009090:CDS 50.0%
GGACACAGCACAATCAACTG+CGG - chr1_1:13290651-13290670 None:intergenic 50.0%
TAAGTTTCCAGTGTGGCCAC+TGG + chr1_1:13291140-13291159 Msa0009090:three_prime_UTR 50.0%
AAAATGTCCAGTGGCCACAC+TGG - chr1_1:13291150-13291169 None:intergenic 50.0%
GCACAGCTGAAAATGTCCAG+TGG - chr1_1:13291159-13291178 None:intergenic 50.0%
TCGGGTTTAGCGATCGGGTT+CGG - chr1_1:13286280-13286299 None:intergenic 55.0%
!! TCTACCTCGTGTAGCGGGTT+CGG - chr1_1:13286299-13286318 None:intergenic 55.0%
CCTCTTCTACCTCGTGTAGC+GGG - chr1_1:13286304-13286323 None:intergenic 55.0%
TACTTGATCACGTGCAGCGG+CGG - chr1_1:13286362-13286381 None:intergenic 55.0%
!! ATGACTGTGATAGCGGCGGT+GGG + chr1_1:13286476-13286495 Msa0009090:CDS 55.0%
GGGAGAACCGCAGCTGATAA+AGG + chr1_1:13286496-13286515 Msa0009090:CDS 55.0%
GGTCCGGTTGCTGAAGATGA+AGG + chr1_1:13286517-13286536 Msa0009090:CDS 55.0%
! GTTGGTCGTCGTATTGGTGC+CGG + chr1_1:13286751-13286770 Msa0009090:CDS 55.0%
ACAAGGGACGGCAAGGTGAT+TGG + chr1_1:13287756-13287775 Msa0009090:CDS 55.0%
!! AGACTGGTCTCACCTTGTGG+CGG + chr1_1:13288216-13288235 Msa0009090:intron 55.0%
TCACCTTGTGGCGGCTTTCA+CGG + chr1_1:13288225-13288244 Msa0009090:intron 55.0%
AAACCGTGAAAGCCGCCACA+AGG - chr1_1:13288231-13288250 None:intergenic 55.0%
GGCGGCTTTCACGGTTTAAC+AGG + chr1_1:13288234-13288253 Msa0009090:intron 55.0%
! TCCTCTGTCCCGCACCTTTT+CGG + chr1_1:13289150-13289169 Msa0009090:CDS 55.0%
GAAGAGAGGACGGTTGACCA+TGG + chr1_1:13289413-13289432 Msa0009090:CDS 55.0%
AGAGGACGGTTGACCATGGA+AGG + chr1_1:13289417-13289436 Msa0009090:CDS 55.0%
CTGATTATGGATGCCGGCAC+TGG + chr1_1:13289723-13289742 Msa0009090:CDS 55.0%
TGGCCACTGCTGGAAGTAGA+TGG + chr1_1:13290298-13290317 Msa0009090:CDS 55.0%
GGCCACTGCTGGAAGTAGAT+GGG + chr1_1:13290299-13290318 Msa0009090:CDS 55.0%
TGCCCATCTACTTCCAGCAG+TGG - chr1_1:13290304-13290323 None:intergenic 55.0%
GTCCGGCAAACTTGTCAGAG+AGG - chr1_1:13290875-13290894 None:intergenic 55.0%
CGGGTTTAGCGATCGGGTTC+GGG - chr1_1:13286279-13286298 None:intergenic 60.0%
! CGGGTTCGGGTTTAGCGATC+GGG - chr1_1:13286285-13286304 None:intergenic 60.0%
! GCGGGTTCGGGTTTAGCGAT+CGG - chr1_1:13286286-13286305 None:intergenic 60.0%
AAACCCGAACCCGCTACACG+AGG + chr1_1:13286292-13286311 Msa0009090:CDS 60.0%
!! CTACCTCGTGTAGCGGGTTC+GGG - chr1_1:13286298-13286317 None:intergenic 60.0%
CCCGCTACACGAGGTAGAAG+AGG + chr1_1:13286301-13286320 Msa0009090:CDS 60.0%
!! CGGCGGCGATGGTGTTGTTA+CGG - chr1_1:13286342-13286361 None:intergenic 60.0%
!! GATGACTGTGATAGCGGCGG+TGG + chr1_1:13286475-13286494 Msa0009090:CDS 60.0%
!! TACCTCAACAGCACCGGCAC+CGG - chr1_1:13286773-13286792 None:intergenic 60.0%
!! CGATGGTAGATGGCGGGTGA+TGG + chr1_1:13287095-13287114 Msa0009090:intron 60.0%
TGGACCTCCTTACGAGTGGC+AGG + chr1_1:13287607-13287626 Msa0009090:CDS 60.0%
!! GCCAGACTGGTCTCACCTTG+TGG + chr1_1:13288213-13288232 Msa0009090:intron 60.0%
GCCACAAGGTGAGACCAGTC+TGG - chr1_1:13288217-13288236 None:intergenic 60.0%
!!! TTTTTTTGGGGGTGGGGGGG+TGG + chr1_1:13288273-13288292 Msa0009090:intron 60.0%
!!! TTTTTTGGGGGTGGGGGGGT+GGG + chr1_1:13288274-13288293 Msa0009090:intron 60.0%
CACGCCAACGAGTTGCTGCA+TGG - chr1_1:13288711-13288730 None:intergenic 60.0%
GCTACCCTGGCAAGGATACC+AGG + chr1_1:13288985-13289004 Msa0009090:CDS 60.0%
! CGCGCCGACCTATGAAGCAA+AGG + chr1_1:13289514-13289533 Msa0009090:CDS 60.0%
GTCACTGCTATGGCCACTGC+TGG + chr1_1:13290288-13290307 Msa0009090:CDS 60.0%
TTGATCACGTGCAGCGGCGG+CGG - chr1_1:13286359-13286378 None:intergenic 65.0%
!! CGTCGTATTGGTGCCGGTGC+CGG + chr1_1:13286757-13286776 Msa0009090:CDS 65.0%
!! TTTTTGGGGGTGGGGGGGTG+GGG + chr1_1:13288275-13288294 Msa0009090:intron 65.0%
AGGGTAGCCGTCCGCGAAGA+AGG - chr1_1:13288973-13288992 None:intergenic 65.0%
TTCTTCGCGGACGGCTACCC+TGG + chr1_1:13288972-13288991 Msa0009090:CDS 65.0%
! GCCGAAAAGGTGCGGGACAG+AGG - chr1_1:13289154-13289173 None:intergenic 65.0%
!! TGCCGGTGCCGGTGCTGTTG+AGG + chr1_1:13286768-13286787 Msa0009090:CDS 70.0%
!! TTTTGGGGGTGGGGGGGTGG+GGG + chr1_1:13288276-13288295 Msa0009090:intron 70.0%
TTTGGGGGTGGGGGGGTGGG+GGG + chr1_1:13288277-13288296 Msa0009090:intron 75.0%
CGCGGACGGCTACCCTGGCA+AGG + chr1_1:13288977-13288996 Msa0009090:CDS 75.0%
! ACGTGCAGCGGCGGCGGCGA+TGG - chr1_1:13286353-13286372 None:intergenic 80.0%
! TTGGGGGTGGGGGGGTGGGG+GGG + chr1_1:13288278-13288297 Msa0009090:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 13286008 13291339 13286008 ID=Msa0009090;Name=Msa0009090
chr1_1 mRNA 13286008 13291339 13286008 ID=Msa0009090-mRNA-1;Parent=Msa0009090;Name=Msa0009090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=209|0.93|0.93|1|1|1|16|561|681
chr1_1 exon 13286008 13286564 13286008 ID=Msa0009090-mRNA-1:exon:4996;Parent=Msa0009090-mRNA-1
chr1_1 exon 13286679 13286789 13286679 ID=Msa0009090-mRNA-1:exon:4997;Parent=Msa0009090-mRNA-1
chr1_1 exon 13287563 13287636 13287563 ID=Msa0009090-mRNA-1:exon:4998;Parent=Msa0009090-mRNA-1
chr1_1 exon 13287718 13287787 13287718 ID=Msa0009090-mRNA-1:exon:4999;Parent=Msa0009090-mRNA-1
chr1_1 exon 13287879 13287934 13287879 ID=Msa0009090-mRNA-1:exon:5000;Parent=Msa0009090-mRNA-1
chr1_1 exon 13288045 13288116 13288045 ID=Msa0009090-mRNA-1:exon:5001;Parent=Msa0009090-mRNA-1
chr1_1 exon 13288511 13288605 13288511 ID=Msa0009090-mRNA-1:exon:5002;Parent=Msa0009090-mRNA-1
chr1_1 exon 13288716 13288782 13288716 ID=Msa0009090-mRNA-1:exon:5003;Parent=Msa0009090-mRNA-1
chr1_1 exon 13288877 13289006 13288877 ID=Msa0009090-mRNA-1:exon:5004;Parent=Msa0009090-mRNA-1
chr1_1 exon 13289086 13289304 13289086 ID=Msa0009090-mRNA-1:exon:5005;Parent=Msa0009090-mRNA-1
chr1_1 exon 13289405 13289535 13289405 ID=Msa0009090-mRNA-1:exon:5006;Parent=Msa0009090-mRNA-1
chr1_1 exon 13289617 13289791 13289617 ID=Msa0009090-mRNA-1:exon:5007;Parent=Msa0009090-mRNA-1
chr1_1 exon 13289952 13290042 13289952 ID=Msa0009090-mRNA-1:exon:5008;Parent=Msa0009090-mRNA-1
chr1_1 exon 13290202 13290359 13290202 ID=Msa0009090-mRNA-1:exon:5009;Parent=Msa0009090-mRNA-1
chr1_1 exon 13290452 13290640 13290452 ID=Msa0009090-mRNA-1:exon:5010;Parent=Msa0009090-mRNA-1
chr1_1 exon 13290719 13291339 13290719 ID=Msa0009090-mRNA-1:exon:5011;Parent=Msa0009090-mRNA-1
chr1_1 five_prime_UTR 13286008 13286216 13286008 ID=Msa0009090-mRNA-1:five_prime_utr;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13286217 13286564 13286217 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13286679 13286789 13286679 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13287563 13287636 13287563 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13287718 13287787 13287718 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13287879 13287934 13287879 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13288045 13288116 13288045 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13288511 13288605 13288511 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13288716 13288782 13288716 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13288877 13289006 13288877 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13289086 13289304 13289086 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13289405 13289535 13289405 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13289617 13289791 13289617 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13289952 13290042 13289952 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13290202 13290359 13290202 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13290452 13290640 13290452 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 CDS 13290719 13290778 13290719 ID=Msa0009090-mRNA-1:cds;Parent=Msa0009090-mRNA-1
chr1_1 three_prime_UTR 13290779 13291339 13290779 ID=Msa0009090-mRNA-1:three_prime_utr;Parent=Msa0009090-mRNA-1
Gene Sequence

>Msa0009090

ATGCCTCCTCAACTTCGAACCAGAAAAACCAAACAACAAAACCCGAATCCGAATCAAAACCCGAACCCGATCGCTAAACCCGAACCCGCTACACGAGGTAGAAGAGGTAGACCTGCTAAAAACCGTAACAACACCATCGCCGCCGCCGCTGCACGTGATCAAGTACAAGAACAACAACAACAACAACAACAACAACAAAACGAACAACCTCACGTGCCGGAACAAATTAGGGTTTCTGATAAGCAAGAGATTATGGATGATGACTGTGATAGCGGCGGTGGGAGAACCGCAGCTGATAAAGGTCCGGTTGCTGAAGATGAAGGGAGTACACCGCCTATTCCTGAAAAAGTTCAGGTGGGTGGTTCACCGATGTACAGAGTAGATAGAAAGCTAGGGAAAGGAGGTTTTGGACAAGTTTATGTTGGTCGTCGTATTGGTGCCGGTGCCGGTGCTGTTGAGGTGGCTTTGAAATTTGAGCATAAAACCAGTAAAGGGTGTAATTATGGACCTCCTTACGAGTGGCAGGTTTACAATGTATTAGGAGGTAGCCATGGTGTCCCACGAGTTCATTACAAGGGACGGCAAGGTGATTGGTATGTCATGGTCATGGATATTCTTGGCCCTAGTTTATGGGATGTTTGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGTCGTGTATAGCAATCGAGGCTGTTTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGTGACGTAAAACCTGAGAACTTTTTGCTTGGCCCTCCGGGAACTCATGAAGAGAAAAAGCTTTTTCTGGTTGATCTTGGTTTAGCAACTCGTTGGCGTGATAATTCGACTGGTCTTCATGTTGATTACGATCAACGTCCAGATGTATTTAGGGGAACTGTTCGTTATGCTAGTGTACATGCTCATCTTGGTAGGACAGGTAGCAGAAGAGATGATTTGGAATCTCTTGCATACACACTAATTTTCCTTCTTCGCGGACGGCTACCCTGGCAAGGATACCAGGGTGAAAATAAAGGATTTCTTGTTTGCAAGAAGAAAATGGCCACCTCGCCAGAAAATATGTGTATCCTCTGTCCCGCACCTTTTCGGCAGTTTATTGAGTTCGTGGTGAATTTGAAGTTCGACGAAGAACCAAATTATGCCAAATATATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATTAGACCCATAAACACTGACGGTGCTCAGAAGGTTGGACAGAAGAGAGGACGGTTGACCATGGAAGGAGATGATGATGAGCAGCCAAAGAAGAAAGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCGCGCCGACCTATGAAGCAAAGGTACCATTACAATGTTGCTGATATGCGGTTGTCCCAACACATCGAAAAGGGATATGAAGATGGGTTATTTATCAGTAGTGTAGGTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTTCTTCCTTCACAAGGAATGGATTATGGAACAGTGGGAAAAAAATTATTACATTAGTGCCATAGCAGGATCTAATAGTGGGAGCTCGTTGGTTGTAATGTCAAAAGGGACCCAATACTTGCAGCAATCCTATAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTCGTCACTGCTATGGCCACTGCTGGAAGTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTTCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAATGGTTACCGCATTACTTCAACTGCTGCTACATATGACCAGGCTGCTCTTGTTCTTAGTATTCCAAGAAGAAAACCGACTGATGAAACTCAAGAAACACTTCGCACATCTGACTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGAAGAACTGTTTCATGA
Protein sequence

>Msa0009090

MPPQLRTRKTKQQNPNPNQNPNPIAKPEPATRGRRGRPAKNRNNTIAAAAARDQVQEQQQQQQQQQNEQPHVPEQIRVSDKQEIMDDDCDSGGGRTAADKGPVAEDEGSTPPIPEKVQVGGSPMYRVDRKLGKGGFGQVYVGRRIGAGAGAVEVALKFEHKTSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDWYVMVMDILGPSLWDVWNNKTHTMSAEMVSCIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTHEEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEFVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKVGQKRGRLTMEGDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGYEDGLFISSVGCCSNLWALIMDAGTGFTAQVYELSSFFLHKEWIMEQWEKNYYISAIAGSNSGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATYDQAALVLSIPRRKPTDETQETLRTSDFPSTHVKEKWAKNLYIASICYGRTVS*