AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149890 MtrunA17_Chr1g0146301 97.664 685 8 4 1 678 1 684 0.0 1387
Msa0149890 MtrunA17_Chr3g0140431 86.644 599 74 2 84 678 2 598 0.0 1104
Msa0149890 MtrunA17_Chr7g0214531 79.564 597 115 2 87 677 3 598 0.0 1028
Msa0149890 MtrunA17_Chr1g0213321 72.350 651 168 4 35 677 29 675 0.0 999
Msa0149890 MtrunA17_Chr7g0253211 75.212 589 141 1 94 677 296 884 0.0 962
Msa0149890 MtrunA17_Chr8g0340491 76.342 596 132 3 91 678 97 691 0.0 950
Msa0149890 MtrunA17_Chr4g0071031 38.828 273 156 5 122 391 9 273 4.25e-59 206
Msa0149890 MtrunA17_Chr2g0329981 38.828 273 156 5 122 391 9 273 6.45e-59 206
Msa0149890 MtrunA17_Chr2g0299661 38.462 273 157 5 122 391 9 273 1.26e-57 202
Msa0149890 MtrunA17_Chr8g0342821 37.828 267 154 6 122 385 9 266 2.74e-56 198
Msa0149890 MtrunA17_Chr7g0261501 38.095 273 158 5 122 391 9 273 3.59e-56 198
Msa0149890 MtrunA17_Chr1g0187571 38.710 279 158 6 116 391 6 274 8.19e-56 197
Msa0149890 MtrunA17_Chr1g0166821 37.634 279 161 6 116 391 6 274 8.33e-56 197
Msa0149890 MtrunA17_Chr1g0183631 37.634 279 161 6 116 391 5 273 2.36e-54 192
Msa0149890 MtrunA17_Chr1g0146151 37.456 283 163 7 112 391 2 273 5.58e-54 191
Msa0149890 MtrunA17_Chr6g0486611 37.363 273 160 5 122 391 9 273 5.65e-54 191
Msa0149890 MtrunA17_Chr8g0390211 37.276 279 162 6 116 391 5 273 1.91e-53 189
Msa0149890 MtrunA17_Chr1g0167261 37.102 283 163 6 114 391 4 276 1.24e-52 185
Msa0149890 MtrunA17_Chr3g0140071 36.201 279 165 6 116 391 5 273 1.25e-52 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149890 AT2G25760.1 75.507 690 137 8 3 678 2 673 0.0 1082
Msa0149890 AT2G25760.2 74.892 693 139 9 3 678 2 676 0.0 1073
Msa0149890 AT3G13670.1 68.741 691 183 6 16 678 18 703 0.0 991
Msa0149890 AT3G03940.1 74.086 602 149 2 81 677 101 700 0.0 968
Msa0149890 AT5G18190.2 66.185 692 214 5 3 677 2 690 0.0 954
Msa0149890 AT5G18190.1 66.185 692 214 5 3 677 2 690 0.0 954
Msa0149890 AT3G03930.1 71.250 240 69 0 438 677 48 287 2.47e-123 368
Msa0149890 AT2G19470.1 38.828 273 156 5 122 391 9 273 3.01e-58 203
Msa0149890 AT4G26100.1 38.095 273 158 5 122 391 9 273 6.66e-58 202
Msa0149890 AT3G23340.1 38.710 279 158 6 116 391 5 273 6.90e-58 202
Msa0149890 AT5G57015.1 38.095 273 158 5 122 391 9 273 7.68e-58 202
Msa0149890 AT4G14340.2 38.710 279 158 6 116 391 11 279 5.53e-57 197
Msa0149890 AT1G03930.1 37.993 279 160 6 116 391 5 273 6.61e-57 201
Msa0149890 AT4G14340.1 38.710 279 158 6 116 391 11 279 8.33e-57 200
Msa0149890 AT1G72710.1 38.462 273 156 6 122 391 9 272 4.36e-56 198
Msa0149890 AT5G44100.1 36.918 279 163 6 116 391 5 273 1.29e-55 197
Msa0149890 AT5G44100.2 36.918 279 163 6 116 391 5 273 1.29e-55 197
Msa0149890 AT4G28540.1 37.276 279 162 6 116 391 9 277 1.81e-55 197
Msa0149890 AT5G43320.1 37.276 279 162 6 116 391 5 273 5.05e-54 193
Msa0149890 AT4G28880.3 37.276 279 162 6 116 391 5 273 7.73e-54 191
Msa0149890 AT4G28880.2 37.276 279 162 6 116 391 5 273 7.73e-54 191
Msa0149890 AT4G28880.1 37.276 279 162 6 116 391 5 273 7.73e-54 191
Msa0149890 AT4G28880.4 37.276 279 162 6 116 391 5 273 7.73e-54 191
Msa0149890 AT4G28860.2 37.276 279 162 6 116 391 5 273 1.67e-53 189
Msa0149890 AT4G28860.1 37.276 279 162 6 116 391 5 273 2.79e-53 189
Msa0149890 AT5G43320.2 37.276 279 162 6 116 391 5 273 2.87e-53 187
Msa0149890 AT5G43320.3 37.276 279 162 6 116 391 5 273 2.87e-53 187
Msa0149890 AT1G04440.1 36.559 279 164 6 116 391 5 273 7.06e-53 189
Msa0149890 AT3G23340.2 38.314 261 150 5 134 391 7 259 3.07e-51 184
Msa0149890 AT4G08800.1 33.333 273 139 6 122 391 9 241 1.00e-41 153

Find 210 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATATATTTGGCATAATT+TGG 0.158062 1_4:-10913025 None:intergenic
CTGAGCACCGTCAGTGTTTA+TGG 0.167427 1_4:-10913089 None:intergenic
CCCATTCTGACTTTCTTCTT+TGG 0.171287 1_4:-10913266 None:intergenic
CTCACGTGCCGGAACAAATT+AGG 0.172612 1_4:+10910236 Msa0149890:CDS
ATATTCTTGGCCCTAGTTTA+TGG 0.174994 1_4:+10911700 Msa0149890:CDS
AGGAGGCATGTTAATCTTTA+AGG 0.188962 1_4:-10910023 None:intergenic
TAACCTTTGGGCACTGATTA+TGG 0.191586 1_4:+10913520 Msa0149890:CDS
ATCGAAAAGTGATATATATT+TGG 0.208565 1_4:-10913035 None:intergenic
CTCTTAAATCTGGCTAGTTT+TGG 0.219764 1_4:+10914649 Msa0149890:three_prime_UTR
AAATGATTCACTGACCTTAT+AGG 0.232158 1_4:-10914033 None:intergenic
TTGTTTGTTTGTAGTGTATT+AGG 0.234532 1_4:+10911518 Msa0149890:intron
AGAATGCATCTTCTCTAATA+TGG 0.254263 1_4:-10911903 None:intergenic
CTACCTCGTGTAGCGGGTTC+GGG 0.258671 1_4:-10910115 None:intergenic
ACCAGTAAAGGGTGTAATTA+TGG 0.259169 1_4:+10911401 Msa0149890:CDS
TTCTGATAAGCAAGAGATTA+TGG 0.259548 1_4:+10910261 Msa0149890:CDS
TAGGTTGTTGTTCTAACCTT+TGG 0.265781 1_4:+10913507 Msa0149890:CDS
TCCATAATTACACCCTTTAC+TGG 0.271957 1_4:-10911402 None:intergenic
TCGGGTTTAGCGATCGGGTT+CGG 0.281544 1_4:-10910097 None:intergenic
TGAAGTCTTTAAGCTACTTC+TGG 0.282427 1_4:+10915023 Msa0149890:three_prime_UTR
TCTTGTTTGCAAGAAGAAAA+TGG 0.283561 1_4:+10912913 Msa0149890:CDS
GCCCTAGTTTATGGGATGTT+TGG 0.283968 1_4:+10911709 Msa0149890:CDS
GAAGAAAACCTTTGCTTCAT+AGG 0.289095 1_4:-10913332 None:intergenic
ATGGGTCTAATGTCTGGATT+TGG 0.294234 1_4:-10913070 None:intergenic
TTTCTGGTTGATCTTGGTTT+AGG 0.301281 1_4:+10912394 Msa0149890:CDS
TCTACCTCGTGTAGCGGGTT+CGG 0.313908 1_4:-10910116 None:intergenic
TATTCTTGGCCCTAGTTTAT+GGG 0.314228 1_4:+10911701 Msa0149890:CDS
CGGGTTTAGCGATCGGGTTC+GGG 0.318336 1_4:-10910096 None:intergenic
TCACGTGCCGGAACAAATTA+GGG 0.325179 1_4:+10910237 Msa0149890:CDS
TGAGCACCGTCAGTGTTTAT+GGG 0.331178 1_4:-10913088 None:intergenic
AAGCTAGGGAAAGGAGGTTT+TGG 0.342457 1_4:+10910534 Msa0149890:CDS
ATCAACGTCCAGATGTATTT+AGG 0.344411 1_4:+10912571 Msa0149890:CDS
ACACTAATCCATTGTGTTGC+TGG 0.346898 1_4:-10913293 None:intergenic
ACTCCATGAAACACTCTTCA+TGG 0.346925 1_4:+10909995 Msa0149890:five_prime_UTR
TTAAGCTACTTCTGGCCTCT+TGG 0.354826 1_4:+10915031 Msa0149890:three_prime_UTR
TTGCAGGTCATGGATATTCT+TGG 0.355219 1_4:+10911687 Msa0149890:intron
AGGTTGTTGTTCTAACCTTT+GGG 0.362175 1_4:+10913508 Msa0149890:CDS
AGGTTAGGTTTGTTTATTGA+TGG 0.362461 1_4:+10914906 Msa0149890:three_prime_UTR
TGGCCACTGCTGGAAGTAGA+TGG 0.368491 1_4:+10914108 Msa0149890:CDS
CTTTAGGATGTCTGCTGAAA+TGG 0.375494 1_4:+10911853 Msa0149890:intron
CATCATATGATTAGTGATTA+CGG 0.379624 1_4:-10914746 None:intergenic
TTCTTCGCGGACGGCTACCC+TGG 0.381224 1_4:+10912782 Msa0149890:CDS
TCAGAAACCCTAATTTGTTC+CGG 0.382437 1_4:-10910244 None:intergenic
ATAGGATTGCTGCAAGTATT+GGG 0.382481 1_4:-10914015 None:intergenic
TATAGGATTGCTGCAAGTAT+TGG 0.382981 1_4:-10914016 None:intergenic
ACACTGCTTTCTCTTAAATC+TGG 0.384194 1_4:+10914639 Msa0149890:three_prime_UTR
ATCACGTGCAGCGGCGGCGG+CGG 0.386563 1_4:-10910176 None:intergenic
AGTCTTGATAGAAAGTTTGT+AGG 0.387767 1_4:+10914846 Msa0149890:three_prime_UTR
GTGTTTATGGGTCTAATGTC+TGG 0.388332 1_4:-10913076 None:intergenic
AGGTAGCAGAAGAGATGATT+TGG 0.392165 1_4:+10912732 Msa0149890:CDS
TCAGCTGTGCATCTTGAACT+TGG 0.404866 1_4:+10914979 Msa0149890:three_prime_UTR
TAGCTGCAGGGTGAAAATAA+AGG 0.408921 1_4:+10912887 Msa0149890:intron
GGGAGAACCGCAGCTGATAA+AGG 0.410075 1_4:+10910307 Msa0149890:CDS
CGGGTTCGGGTTTAGCGATC+GGG 0.416775 1_4:-10910102 None:intergenic
ATCCTCTCTGACAAGTTTGC+CGG 0.419070 1_4:+10914680 Msa0149890:three_prime_UTR
GTTTATGTTGGTCGTCGTAT+TGG 0.427782 1_4:+10910561 Msa0149890:CDS
AAATGTGAAGGTATTTACTT+AGG 0.430671 1_4:+10914886 Msa0149890:three_prime_UTR
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 1_4:+10914134 Msa0149890:CDS
GTCTTGATAGAAAGTTTGTA+GGG 0.431009 1_4:+10914847 Msa0149890:three_prime_UTR
ATACTTGCAGCAATCCTATA+AGG 0.432661 1_4:+10914019 Msa0149890:CDS
CTGATTATGGATGCCGGCAC+TGG 0.434575 1_4:+10913533 Msa0149890:CDS
ACAAGTTACCTAAATACATC+TGG 0.436822 1_4:-10912579 None:intergenic
CTCCCTTCATCTTCAGCAAC+CGG 0.439789 1_4:-10910331 None:intergenic
TATATTGCATCTATTTGTTA+CGG 0.443891 1_4:+10914550 Msa0149890:CDS
TATGACCTGGTATCCTTGCC+AGG 0.447271 1_4:-10912800 None:intergenic
CGTCGTATTGGTGCCGGAGC+CGG 0.448238 1_4:+10910573 Msa0149890:CDS
GCTCCATGAAGAGTGTTTCA+TGG 0.448600 1_4:-10909998 None:intergenic
ACAAGGGACGGCAAGGTGAT+TGG 0.451632 1_4:+10911570 Msa0149890:CDS
CGGCGGCGATGGTGTTGTTA+CGG 0.451967 1_4:-10910159 None:intergenic
GCGGGTTCGGGTTTAGCGAT+CGG 0.452422 1_4:-10910103 None:intergenic
TGAAGGTATTTACTTAGGTT+AGG 0.453673 1_4:+10914891 Msa0149890:three_prime_UTR
TTGATCACGTGCAGCGGCGG+CGG 0.456771 1_4:-10910179 None:intergenic
GCCATAGCAGGATCTAATAG+TGG 0.459499 1_4:+10913804 Msa0149890:CDS
TTTGAGCATAAAACCAGTAA+AGG 0.460416 1_4:+10911389 Msa0149890:CDS
AGTAGCTTAAAGACTTCAAA+AGG 0.466019 1_4:-10915018 None:intergenic
GGGTTATTTATCAGTAGTGT+AGG 0.469943 1_4:+10913488 Msa0149890:CDS
AACTCAATAAACTGCCGAAA+AGG 0.471641 1_4:-10912974 None:intergenic
ATCGAAAAGGGATATGAAGA+TGG 0.473461 1_4:+10913467 Msa0149890:CDS
TCGGCAGTTTATTGAGTTCG+TGG 0.473854 1_4:+10912979 Msa0149890:CDS
TACAGAGTAGATAGAAAGCT+AGG 0.474012 1_4:+10910519 Msa0149890:CDS
CTCATCCTTCTTCCTTCACA+AGG 0.477955 1_4:+10913580 Msa0149890:CDS
CTGAATCTCAGAAAGCTTCA+CGG 0.478991 1_4:-10914590 None:intergenic
CTCATCATCATCTCCTTCCA+TGG 0.479092 1_4:-10913240 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.481033 1_4:+10914098 Msa0149890:CDS
GCCAAAGAAGAAAGTCAGAA+TGG 0.481635 1_4:+10913265 Msa0149890:CDS
AACAAATAGATGCAATATAG+AGG 0.484055 1_4:-10914546 None:intergenic
TTGAGCATAAAACCAGTAAA+GGG 0.485067 1_4:+10911390 Msa0149890:CDS
TGGACCTCCTTACGAGTGGC+AGG 0.485361 1_4:+10911421 Msa0149890:CDS
GTGAATCATTTCCATTCAAG+TGG 0.485946 1_4:+10914045 Msa0149890:CDS
AGGGTAGCCGTCCGCGAAGA+AGG 0.489461 1_4:-10912780 None:intergenic
AACAACCTTGTGAAGGAAGA+AGG 0.492459 1_4:-10913585 None:intergenic
GTTGTCCCAACACATCGAAA+AGG 0.495024 1_4:+10913454 Msa0149890:CDS
TATACCTTGACATGAGTACT+AGG 0.497638 1_4:-10914433 None:intergenic
TACCTCAACAGCACCGGCTC+CGG 0.498945 1_4:-10910586 None:intergenic
GATGACTGTGATAGCGGCGG+TGG 0.500267 1_4:+10910286 Msa0149890:CDS
GGTCCGGTTGCTGAAGATGA+AGG 0.507097 1_4:+10910328 Msa0149890:CDS
TAGAACCGACGCAGATGGAG+AGG 0.508000 1_4:-10909906 None:intergenic
AGGAATGGATTATGGAACAG+TGG 0.508088 1_4:+10913760 Msa0149890:intron
GCTAGTGTACATGCTCATCT+TGG 0.512428 1_4:+10912703 Msa0149890:CDS
GTGTAACAGGTTCAGGTGGG+TGG 0.514399 1_4:+10910486 Msa0149890:intron
TATTACATTAGTGCCATAGC+AGG 0.514536 1_4:+10913792 Msa0149890:CDS
GATAGAAAGCTAGGGAAAGG+AGG 0.516277 1_4:+10910528 Msa0149890:CDS
GTTGGTCGTCGTATTGGTGC+CGG 0.516374 1_4:+10910567 Msa0149890:CDS
ATCTGAAAATCCAGCACCAC+GGG 0.518126 1_4:-10914144 None:intergenic
TTCCAAACATCCCATAAACT+AGG 0.518224 1_4:-10911711 None:intergenic
GTTTCTTGAGTTTCATCAGT+CGG 0.518437 1_4:-10914391 None:intergenic
CCTCTTCTACCTCGTGTAGC+GGG 0.519563 1_4:-10910121 None:intergenic
TCGTTGGTTGTAATGTCAAA+AGG 0.520574 1_4:+10913831 Msa0149890:CDS
CATGCTCATCTTGGTAGGAC+AGG 0.525496 1_4:+10912712 Msa0149890:CDS
CCAAAGAAGAAAGTCAGAAT+GGG 0.530872 1_4:+10913266 Msa0149890:CDS
AACCGCAGCTGATAAAGGTC+CGG 0.531660 1_4:+10910312 Msa0149890:CDS
GAGAATAGAACCGACGCAGA+TGG 0.533722 1_4:-10909911 None:intergenic
GAACAATAATTAAAATGTGA+AGG 0.536883 1_4:+10914874 Msa0149890:three_prime_UTR
ATAAACTGCCGAAAAGGTGC+GGG 0.538646 1_4:-10912968 None:intergenic
TTTGCCATGCAGCAACTCGT+TGG 0.539312 1_4:+10912514 Msa0149890:intron
TTGTCCCAACACATCGAAAA+GGG 0.539526 1_4:+10913455 Msa0149890:CDS
AAAACCTTTGCTTCATAGGT+CGG 0.541274 1_4:-10913328 None:intergenic
TTCACCCTCTCCATCTGCGT+CGG 0.541620 1_4:+10909901 Msa0149890:five_prime_UTR
AAAATGTCCAGTGGCCACAC+TGG 0.542344 1_4:-10914957 None:intergenic
CGCGGACGGCTACCCTGGCA+AGG 0.543822 1_4:+10912787 Msa0149890:CDS
TTTGTTTGTAGTGTATTAGG+AGG 0.544434 1_4:+10911521 Msa0149890:intron
TAAGTTTCCAGTGTGGCCAC+TGG 0.544452 1_4:+10914950 Msa0149890:three_prime_UTR
CAATGCAGAAGGGATTTGTC+CGG 0.547715 1_4:-10914699 None:intergenic
AAACACTGACGGTGCTCAGA+AGG 0.548675 1_4:+10913093 Msa0149890:CDS
CTTAAAGACTTCAAAAGGAA+AGG 0.549419 1_4:-10915013 None:intergenic
CGTCCCTTGTAATGAACTCG+TGG 0.549783 1_4:-10911557 None:intergenic
GCTACCCTGGCAAGGATACC+AGG 0.551712 1_4:+10912795 Msa0149890:CDS
GTGAAGGTATTCATCGAAGG+TGG 0.556433 1_4:+10914290 Msa0149890:CDS
AAACGAACAACCTCACGTGC+CGG 0.557745 1_4:+10910225 Msa0149890:CDS
GCATATCAGCAACATTGTAA+TGG 0.559923 1_4:-10913430 None:intergenic
CCCGCTACACGAGGTAGAAG+AGG 0.561644 1_4:+10910121 Msa0149890:CDS
TCCAAACATCCCATAAACTA+GGG 0.562426 1_4:-10911710 None:intergenic
ACCTCTTCTACCTCGTGTAG+CGG 0.562642 1_4:-10910122 None:intergenic
GTAGATAGAAAGCTAGGGAA+AGG 0.563147 1_4:+10910525 Msa0149890:CDS
GGAATGGATTATGGAACAGT+GGG 0.563150 1_4:+10913761 Msa0149890:intron
TGCCGGAGCCGGTGCTGTTG+AGG 0.563693 1_4:+10910584 Msa0149890:CDS
TTGTAAACCTGCCACTCGTA+AGG 0.564528 1_4:-10911428 None:intergenic
CACGAGTTCATTACAAGGGA+CGG 0.566096 1_4:+10911558 Msa0149890:CDS
GCCGAAAAGGTGCGGGACAG+AGG 0.569844 1_4:-10912961 None:intergenic
TGGGCACTGATTATGGATGC+CGG 0.570860 1_4:+10913527 Msa0149890:CDS
ATCTAATAGTGGGAGCTCGT+TGG 0.570915 1_4:+10913815 Msa0149890:CDS
GGCCACTGCTGGAAGTAGAT+GGG 0.571298 1_4:+10914109 Msa0149890:CDS
CTTCGATGAATACCTTCACT+AGG 0.572280 1_4:-10914286 None:intergenic
TCAAAAGGAAAGGAGAAAAG+AGG 0.574251 1_4:-10915003 None:intergenic
AGAGGACGGTTGACCATGGA+AGG 0.574941 1_4:+10913227 Msa0149890:CDS
TATGCATACATCAATGCAGA+AGG 0.575574 1_4:-10914710 None:intergenic
CTAATTTGTTCCGGCACGTG+AGG 0.575786 1_4:-10910235 None:intergenic
CCATCATACCTCAACAGCAC+CGG 0.576707 1_4:-10910592 None:intergenic
TACTAAGAACAAGAGCAGCC+TGG 0.577119 1_4:-10914354 None:intergenic
TCGAAAAGGGATATGAAGAT+GGG 0.578550 1_4:+10913468 Msa0149890:CDS
CGTTGGCGTGATAATTCGAC+TGG 0.587524 1_4:+10912531 Msa0149890:CDS
GCAAGGTGATTGGTATGTCA+TGG 0.589006 1_4:+10911580 Msa0149890:CDS
CGCGCCGACCTATGAAGCAA+AGG 0.589757 1_4:+10913324 Msa0149890:CDS
AACTGCTGCTACATATGACC+AGG 0.592537 1_4:+10914336 Msa0149890:CDS
ACAGAGTAGATAGAAAGCTA+GGG 0.592579 1_4:+10910520 Msa0149890:CDS
CTGGAAGATTCGAACGACGA+CGG 0.594413 1_4:-10909965 None:intergenic
TACTTGATCACGTGCAGCGG+CGG 0.595072 1_4:-10910182 None:intergenic
AACCGGACCTTTATCAGCTG+CGG 0.595722 1_4:-10910314 None:intergenic
AATAAACTGCCGAAAAGGTG+CGG 0.597388 1_4:-10912969 None:intergenic
TGTATGCATAACTTATTATG+TGG 0.600627 1_4:+10914723 Msa0149890:three_prime_UTR
GTGTACATGCTCATCTTGGT+AGG 0.600986 1_4:+10912707 Msa0149890:CDS
GTCCGGTTGCTGAAGATGAA+GGG 0.607367 1_4:+10910329 Msa0149890:CDS
TTTCTGGTTCGAAGTTGAGG+AGG 0.607805 1_4:-10910040 None:intergenic
CTTTCCTAGTACTCATGTCA+AGG 0.608784 1_4:+10914429 Msa0149890:CDS
TTGTGCAGTGAAACCAGTGC+CGG 0.610323 1_4:-10913546 None:intergenic
TGCCCATCTACTTCCAGCAG+TGG 0.611695 1_4:-10914111 None:intergenic
CCATAGCAGGATCTAATAGT+GGG 0.612424 1_4:+10913805 Msa0149890:CDS
CCCACTATTAGATCCTGCTA+TGG 0.617210 1_4:-10913805 None:intergenic
TCTCTTCATGAGTTCCCGGA+GGG 0.618779 1_4:-10912363 None:intergenic
GTTCATTACAAGGGACGGCA+AGG 0.622003 1_4:+10911563 Msa0149890:CDS
AAAGAGAGGACGGTTGACCA+TGG 0.624209 1_4:+10913223 Msa0149890:CDS
TTGTACTTGATCACGTGCAG+CGG 0.625961 1_4:-10910185 None:intergenic
TGAAGGTATTCATCGAAGGT+GGG 0.628022 1_4:+10914291 Msa0149890:CDS
TTCTCTTCATGAGTTCCCGG+AGG 0.630312 1_4:-10912364 None:intergenic
TGGGAATGCCAGCAACACAA+TGG 0.633757 1_4:+10913285 Msa0149890:CDS
TATCAGGTTGGACAAAAGAG+AGG 0.635812 1_4:+10913209 Msa0149890:intron
CTAGTGAAGGTATTCATCGA+AGG 0.635960 1_4:+10914287 Msa0149890:CDS
TAGAGAAGATGCATTCTAGA+GGG 0.637214 1_4:+10911909 Msa0149890:CDS
CTTTCTATCAAGACTCACCC+AGG 0.639397 1_4:-10914838 None:intergenic
AGAACCGACGCAGATGGAGA+GGG 0.642887 1_4:-10909905 None:intergenic
ATGACCTGGTATCCTTGCCA+GGG 0.644585 1_4:-10912799 None:intergenic
TTAGAGAAGATGCATTCTAG+AGG 0.645638 1_4:+10911908 Msa0149890:CDS
ATTCATCGAAGGTGGGACAA+TGG 0.646078 1_4:+10914298 Msa0149890:CDS
TTTGTGTAACAGGTTCAGGT+GGG 0.647278 1_4:+10910483 Msa0149890:intron
TGGGCAATTGTTATGTCCCG+TGG 0.648130 1_4:+10914128 Msa0149890:CDS
TTTCTATCTACTCTGTACAT+CGG 0.650362 1_4:-10910513 None:intergenic
TCTTGATAGAAAGTTTGTAG+GGG 0.651158 1_4:+10914848 Msa0149890:three_prime_UTR
TGTCCCACGAGTTCATTACA+AGG 0.652591 1_4:+10911553 Msa0149890:CDS
AATGAACTCGTGGGACACCA+TGG 0.653940 1_4:-10911547 None:intergenic
TAAACCTGCCACTCGTAAGG+AGG 0.654486 1_4:-10911425 None:intergenic
CATCCATAATCAGTGCCCAA+AGG 0.657903 1_4:-10913523 None:intergenic
ATGCATACATCAATGCAGAA+GGG 0.661234 1_4:-10914709 None:intergenic
AGGTTGGACAAAAGAGAGGA+CGG 0.664046 1_4:+10913213 Msa0149890:intron
ATGACTGTGATAGCGGCGGT+GGG 0.665147 1_4:+10910287 Msa0149890:CDS
GGTGTCGTGTATAGCAATCG+AGG 0.667047 1_4:+10911874 Msa0149890:CDS
GTCCGGCAAACTTGTCAGAG+AGG 0.668074 1_4:-10914682 None:intergenic
GTCAAATTCAGAAATCCAAG+AGG 0.671782 1_4:-10915046 None:intergenic
GATCTGAAAATCCAGCACCA+CGG 0.671996 1_4:-10914145 None:intergenic
ATTTGTTTCAGATACGTGCA+TGG 0.673109 1_4:+10912310 Msa0149890:intron
GTCCCTTGTAATGAACTCGT+GGG 0.673497 1_4:-10911556 None:intergenic
ATTACAATGTTGCTGATATG+CGG 0.677018 1_4:+10913432 Msa0149890:CDS
AGTGTATTAGGAGGTAGCCA+TGG 0.677995 1_4:+10911530 Msa0149890:intron
ATGGATGATGACTGTGATAG+CGG 0.678914 1_4:+10910280 Msa0149890:CDS
ATTAGACCCATAAACACTGA+CGG 0.692330 1_4:+10913082 Msa0149890:CDS
GTCCCACGAGTTCATTACAA+GGG 0.693718 1_4:+10911554 Msa0149890:CDS
TAGCAGCAGTTGAAGTAATG+CGG 0.693804 1_4:-10914324 None:intergenic
ATTATGGACCTCCTTACGAG+TGG 0.700752 1_4:+10911417 Msa0149890:CDS
GCACAGCTGAAAATGTCCAG+TGG 0.709666 1_4:-10914966 None:intergenic
AAACCCGAACCCGCTACACG+AGG 0.720713 1_4:+10910112 Msa0149890:CDS
GATGATGACTGTGATAGCGG+CGG 0.731600 1_4:+10910283 Msa0149890:CDS
GCTACTATAAGTTTCCAGTG+TGG 0.756031 1_4:+10914943 Msa0149890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTGATTTTTTTTCAT+TGG + chr1_4:10909861-10909880 Msa0149890:five_prime_UTR 10.0%
!!! AAAAAAAAAATTACTTTTTC+AGG - chr1_4:10910370-10910389 None:intergenic 10.0%
!!! ATTTTTAAATTTTGTGTAAC+AGG + chr1_4:10910473-10910492 Msa0149890:intron 15.0%
!!! TTCAATTTTATTTTTTAACC+TGG + chr1_4:10911657-10911676 Msa0149890:intron 15.0%
!!! TTTCTTGCATTTTTTTTTTT+TGG + chr1_4:10912069-10912088 Msa0149890:intron 15.0%
!!! TTCTTGCATTTTTTTTTTTT+GGG + chr1_4:10912070-10912089 Msa0149890:intron 15.0%
!!! CTAAGTTTTTTTATTCTTTT+TGG + chr1_4:10913400-10913419 Msa0149890:intron 15.0%
!!! ATAACTACTTTTGTTTTTAT+AGG + chr1_4:10913740-10913759 Msa0149890:intron 15.0%
!! ATTAATAAAAAATGGAAAGA+AGG + chr1_4:10914068-10914087 Msa0149890:CDS 15.0%
!!! TTTTGCATTTTATAATCTCA+TGG - chr1_4:10909838-10909857 None:intergenic 20.0%
!!! AAAATTACTTTTTCAGGAAT+AGG - chr1_4:10910364-10910383 None:intergenic 20.0%
!!! TATCAATTTTTTAATCTGCA+TGG + chr1_4:10910407-10910426 Msa0149890:intron 20.0%
!!! TCAATTATTCATTTTTACGT+CGG - chr1_4:10910857-10910876 None:intergenic 20.0%
!! AATAAAAACATCAATCAATG+TGG - chr1_4:10910988-10911007 None:intergenic 20.0%
!!! AAGATTTTGTTTTTTTATCG+AGG + chr1_4:10911616-10911635 Msa0149890:intron 20.0%
!!! AGATTTTGTTTTTTTATCGA+GGG + chr1_4:10911617-10911636 Msa0149890:intron 20.0%
!!! TAACTGTATTTTCTATTTTG+TGG + chr1_4:10911830-10911849 Msa0149890:intron 20.0%
!!! TCTTGCATTTTTTTTTTTTG+GGG + chr1_4:10912071-10912090 Msa0149890:intron 20.0%
!!! AAGTGATTTGCATTTTTTTT+CGG - chr1_4:10912230-10912249 None:intergenic 20.0%
!! TTGTTTGCATTTCTAATTTA+CGG + chr1_4:10912598-10912617 Msa0149890:intron 20.0%
!! TATTAAAAACAAATATGACC+TGG - chr1_4:10912816-10912835 None:intergenic 20.0%
!!! AGCTAACAATTTTATTAGAA+CGG - chr1_4:10912872-10912891 None:intergenic 20.0%
!! GATATATATTTGGCATAATT+TGG - chr1_4:10913028-10913047 None:intergenic 20.0%
!! ATCGAAAAGTGATATATATT+TGG - chr1_4:10913038-10913057 None:intergenic 20.0%
!!! AAATATATATCACTTTTCGA+TGG + chr1_4:10913037-10913056 Msa0149890:CDS 20.0%
!!! TACTTTTGTTTTTATAGGAA+TGG + chr1_4:10913745-10913764 Msa0149890:intron 20.0%
!!! TTAGGATATTTTGCATATTT+TGG + chr1_4:10913920-10913939 Msa0149890:intron 20.0%
!!! TTTTTATTAATCCACTTGAA+TGG - chr1_4:10914059-10914078 None:intergenic 20.0%
!!! TCAAGTGGATTAATAAAAAA+TGG + chr1_4:10914060-10914079 Msa0149890:CDS 20.0%
!!! TATATTGCATCTATTTGTTA+CGG + chr1_4:10914550-10914569 Msa0149890:CDS 20.0%
!! GAACAATAATTAAAATGTGA+AGG + chr1_4:10914874-10914893 Msa0149890:three_prime_UTR 20.0%
!!! ATTTGACCTTATTTTAAAGA+TGG + chr1_4:10915062-10915081 Msa0149890:three_prime_UTR 20.0%
!!! TGTTTTCCATCTTTAAAATA+AGG - chr1_4:10915071-10915090 None:intergenic 20.0%
!!! ATTTTAAAGATGGAAAACAA+TGG + chr1_4:10915072-10915091 Msa0149890:three_prime_UTR 20.0%
!! ATTTTATATCAATTCCCACA+TGG - chr1_4:10910683-10910702 None:intergenic 25.0%
! TGATTGAAAATTGATGTCAA+TGG + chr1_4:10910883-10910902 Msa0149890:intron 25.0%
! TTTCATTCATAATCAAAGTC+TGG + chr1_4:10911033-10911052 Msa0149890:intron 25.0%
! TGTAGGAATATCATAAAAAC+TGG + chr1_4:10911061-10911080 Msa0149890:intron 25.0%
! ATTGTAATAAATGAGCTGAA+AGG - chr1_4:10911474-10911493 None:intergenic 25.0%
! TTGTTTGTTTGTAGTGTATT+AGG + chr1_4:10911518-10911537 Msa0149890:intron 25.0%
!! TGTGTCTTGATTTTTATTGT+TGG + chr1_4:10911789-10911808 Msa0149890:intron 25.0%
!! ATTTTCTATTTTGTGGCTTT+AGG + chr1_4:10911837-10911856 Msa0149890:intron 25.0%
! AATAAATCAAAAACAGGATC+AGG - chr1_4:10911948-10911967 None:intergenic 25.0%
!!! TCCTGTTTTTGATTTATTTG+TGG + chr1_4:10911950-10911969 Msa0149890:intron 25.0%
! TCCACAAATAAATCAAAAAC+AGG - chr1_4:10911954-10911973 None:intergenic 25.0%
!!! CTTGCATTTTTTTTTTTTGG+GGG + chr1_4:10912072-10912091 Msa0149890:intron 25.0%
! TCAACTCAACTTAAATTAGT+TGG + chr1_4:10912169-10912188 Msa0149890:intron 25.0%
! CAACTCAACTTAAATTAGTT+GGG + chr1_4:10912170-10912189 Msa0149890:intron 25.0%
! AACTCAACTTAAATTAGTTG+GGG + chr1_4:10912171-10912190 Msa0149890:intron 25.0%
! TAATAAAATTGTTAGCTGCA+GGG + chr1_4:10912875-10912894 Msa0149890:intron 25.0%
! ATTTAGAGATTACTGTTTAC+AGG + chr1_4:10913132-10913151 Msa0149890:intron 25.0%
! TGAAGTTAAATGAGTCTTTA+TGG + chr1_4:10913355-10913374 Msa0149890:intron 25.0%
!!! TTTTTTTATTCTTTTTGGCC+AGG + chr1_4:10913405-10913424 Msa0149890:intron 25.0%
! AAAAAATAACAACCTTGTGA+AGG - chr1_4:10913595-10913614 None:intergenic 25.0%
! TAATGTATTCTTCACAGTAT+TGG + chr1_4:10913691-10913710 Msa0149890:intron 25.0%
!!! GTTTTTATAGGAATGGATTA+TGG + chr1_4:10913752-10913771 Msa0149890:intron 25.0%
! TAAATTGACTGGATTGTATT+AGG + chr1_4:10913902-10913921 Msa0149890:intron 25.0%
!!! TCTCTTCTAAAATTAATTCC+AGG + chr1_4:10914240-10914259 Msa0149890:intron 25.0%
! TTCATGATTAAAGAAGACTA+TGG - chr1_4:10914482-10914501 None:intergenic 25.0%
!!! ATGTTTGATGTTATTTTTGC+AGG + chr1_4:10914507-10914526 Msa0149890:intron 25.0%
!!! TGTTATTTTTGCAGGAAAAA+TGG + chr1_4:10914515-10914534 Msa0149890:intron 25.0%
!!! GTTATTTTTGCAGGAAAAAT+GGG + chr1_4:10914516-10914535 Msa0149890:intron 25.0%
! AACAAATAGATGCAATATAG+AGG - chr1_4:10914549-10914568 None:intergenic 25.0%
! TGTATGCATAACTTATTATG+TGG + chr1_4:10914723-10914742 Msa0149890:three_prime_UTR 25.0%
! CATCATATGATTAGTGATTA+CGG - chr1_4:10914749-10914768 None:intergenic 25.0%
!!! AAATGTGAAGGTATTTACTT+AGG + chr1_4:10914886-10914905 Msa0149890:three_prime_UTR 25.0%
!!! GTTTTGTTGTTTGGTTTTTC+TGG - chr1_4:10910059-10910078 None:intergenic 30.0%
TTCTGATAAGCAAGAGATTA+TGG + chr1_4:10910261-10910280 Msa0149890:CDS 30.0%
!!! ATTACTTTTTCAGGAATAGG+CGG - chr1_4:10910361-10910380 None:intergenic 30.0%
! AAATTTTGTGTAACAGGTTC+AGG + chr1_4:10910479-10910498 Msa0149890:intron 30.0%
TTTCTATCTACTCTGTACAT+CGG - chr1_4:10910516-10910535 None:intergenic 30.0%
!! ATGATAAAGTATTGTCCATG+TGG + chr1_4:10910665-10910684 Msa0149890:intron 30.0%
!! TGATAAAGTATTGTCCATGT+GGG + chr1_4:10910666-10910685 Msa0149890:intron 30.0%
! TTGATGTCAGTGTTATTGAT+TGG + chr1_4:10910748-10910767 Msa0149890:intron 30.0%
!! TCATTTTTACGTCGGATATT+AGG - chr1_4:10910849-10910868 None:intergenic 30.0%
ACAACATCATACTTATATGG+CGG - chr1_4:10910942-10910961 None:intergenic 30.0%
ACCACAACATCATACTTATA+TGG - chr1_4:10910945-10910964 None:intergenic 30.0%
GTAAATAAAAGAGAGAACAC+CGG + chr1_4:10911258-10911277 Msa0149890:intron 30.0%
! TTGTGCAATGAATAATTTGC+AGG + chr1_4:10911355-10911374 Msa0149890:intron 30.0%
TTTGAGCATAAAACCAGTAA+AGG + chr1_4:10911389-10911408 Msa0149890:CDS 30.0%
TTGAGCATAAAACCAGTAAA+GGG + chr1_4:10911390-10911409 Msa0149890:CDS 30.0%
TTTGTTTGTAGTGTATTAGG+AGG + chr1_4:10911521-10911540 Msa0149890:intron 30.0%
TTAACCTGGAATTATATTGC+AGG + chr1_4:10911671-10911690 Msa0149890:intron 30.0%
AGAATGCATCTTCTCTAATA+TGG - chr1_4:10911906-10911925 None:intergenic 30.0%
!!! CATTTTTTTTTTTTGGGGGT+GGG + chr1_4:10912076-10912095 Msa0149890:intron 30.0%
!!! ATTTTTTTTTTTTGGGGGTG+GGG + chr1_4:10912077-10912096 Msa0149890:intron 30.0%
!! TAAGTTGAGTTGACCTAATA+AGG - chr1_4:10912162-10912181 None:intergenic 30.0%
!! TGAAGAGAAAAAGCTTTTTC+TGG + chr1_4:10912378-10912397 Msa0149890:CDS 30.0%
ACAAGTTACCTAAATACATC+TGG - chr1_4:10912582-10912601 None:intergenic 30.0%
! GAATTTTCTGATCAAAATCC+AGG + chr1_4:10912622-10912641 Msa0149890:intron 30.0%
CTAATAAAATTGTTAGCTGC+AGG + chr1_4:10912874-10912893 Msa0149890:intron 30.0%
! TCTTGTTTGCAAGAAGAAAA+TGG + chr1_4:10912913-10912932 Msa0149890:CDS 30.0%
! TCTTGTTGCTAATATTTTCC+TGG + chr1_4:10913166-10913185 Msa0149890:intron 30.0%
TGCTGTTAAGCTTATTTATC+AGG + chr1_4:10913193-10913212 Msa0149890:intron 30.0%
GTTAAGCTTATTTATCAGGT+TGG + chr1_4:10913197-10913216 Msa0149890:intron 30.0%
ATTACAATGTTGCTGATATG+CGG + chr1_4:10913432-10913451 Msa0149890:CDS 30.0%
AAATGATTCACTGACCTTAT+AGG - chr1_4:10914036-10914055 None:intergenic 30.0%
AGAAGAGAAAACATCACATA+TGG - chr1_4:10914228-10914247 None:intergenic 30.0%
CTAAAATTAATTCCAGGTTG+TGG + chr1_4:10914246-10914265 Msa0149890:intron 30.0%
!!! TAGATCATTTTTTGTCAACC+TGG + chr1_4:10914820-10914839 Msa0149890:three_prime_UTR 30.0%
!!! AGATCATTTTTTGTCAACCT+GGG + chr1_4:10914821-10914840 Msa0149890:three_prime_UTR 30.0%
AGTCTTGATAGAAAGTTTGT+AGG + chr1_4:10914846-10914865 Msa0149890:three_prime_UTR 30.0%
GTCTTGATAGAAAGTTTGTA+GGG + chr1_4:10914847-10914866 Msa0149890:three_prime_UTR 30.0%
TCTTGATAGAAAGTTTGTAG+GGG + chr1_4:10914848-10914867 Msa0149890:three_prime_UTR 30.0%
!! TGAAGGTATTTACTTAGGTT+AGG + chr1_4:10914891-10914910 Msa0149890:three_prime_UTR 30.0%
! AGGTTAGGTTTGTTTATTGA+TGG + chr1_4:10914906-10914925 Msa0149890:three_prime_UTR 30.0%
CTTAAAGACTTCAAAAGGAA+AGG - chr1_4:10915016-10915035 None:intergenic 30.0%
AGTAGCTTAAAGACTTCAAA+AGG - chr1_4:10915021-10915040 None:intergenic 30.0%
!!! GTTTCATGGAGTTTTGTTTC+TGG - chr1_4:10909987-10910006 None:intergenic 35.0%
! AGGAGGCATGTTAATCTTTA+AGG - chr1_4:10910026-10910045 None:intergenic 35.0%
!! TCAGAAACCCTAATTTGTTC+CGG - chr1_4:10910247-10910266 None:intergenic 35.0%
TACAGAGTAGATAGAAAGCT+AGG + chr1_4:10910519-10910538 Msa0149890:CDS 35.0%
ACAGAGTAGATAGAAAGCTA+GGG + chr1_4:10910520-10910539 Msa0149890:CDS 35.0%
!!! GGTTTTGGACAAGTTTATGT+TGG + chr1_4:10910549-10910568 Msa0149890:CDS 35.0%
! TCAGTGTTATTGATTGGAGT+TGG + chr1_4:10910754-10910773 Msa0149890:intron 35.0%
ATCTGTATCACATTCACCAT+AGG - chr1_4:10910822-10910841 None:intergenic 35.0%
! ATTGATGTCAATGGTAACGA+TGG + chr1_4:10910892-10910911 Msa0149890:intron 35.0%
GCCATATAAGTATGATGTTG+TGG + chr1_4:10910941-10910960 Msa0149890:intron 35.0%
ATCAAAGTCTGGATACATGT+AGG + chr1_4:10911044-10911063 Msa0149890:intron 35.0%
TGGAGAACTAGCATTATATG+TGG + chr1_4:10911081-10911100 Msa0149890:intron 35.0%
TGCAAGGAGACAAACTAATA+CGG - chr1_4:10911132-10911151 None:intergenic 35.0%
TGTTATTACCAACTCTCATG+TGG - chr1_4:10911159-10911178 None:intergenic 35.0%
GGTAATAACAGTTGCTTGTT+TGG + chr1_4:10911169-10911188 Msa0149890:intron 35.0%
!!! CAATCAATGCTTGCTTTTTG+AGG - chr1_4:10911201-10911220 None:intergenic 35.0%
!!! ACCGGTGCATTCTTTTTTAA+TGG + chr1_4:10911276-10911295 Msa0149890:intron 35.0%
CCCATTAAAAAAGAATGCAC+CGG - chr1_4:10911280-10911299 None:intergenic 35.0%
!!! CCGGTGCATTCTTTTTTAAT+GGG + chr1_4:10911277-10911296 Msa0149890:intron 35.0%
ACTGCAAATTACACACACTA+AGG - chr1_4:10911319-10911338 None:intergenic 35.0%
! TTAGTGTGTGTAATTTGCAG+TGG + chr1_4:10911318-10911337 Msa0149890:intron 35.0%
! TGCAATGAATAATTTGCAGG+TGG + chr1_4:10911358-10911377 Msa0149890:intron 35.0%
! ACCAGTAAAGGGTGTAATTA+TGG + chr1_4:10911401-10911420 Msa0149890:CDS 35.0%
TCCATAATTACACCCTTTAC+TGG - chr1_4:10911405-10911424 None:intergenic 35.0%
!!! TTGTTTTTTTATCGAGGGCT+AGG + chr1_4:10911622-10911641 Msa0149890:intron 35.0%
!!! TGTTTTTTTATCGAGGGCTA+GGG + chr1_4:10911623-10911642 Msa0149890:intron 35.0%
ATGACCTGCAATATAATTCC+AGG - chr1_4:10911678-10911697 None:intergenic 35.0%
TGGAATTATATTGCAGGTCA+TGG + chr1_4:10911677-10911696 Msa0149890:intron 35.0%
ATATTCTTGGCCCTAGTTTA+TGG + chr1_4:10911700-10911719 Msa0149890:CDS 35.0%
TATTCTTGGCCCTAGTTTAT+GGG + chr1_4:10911701-10911720 Msa0149890:CDS 35.0%
TCCAAACATCCCATAAACTA+GGG - chr1_4:10911713-10911732 None:intergenic 35.0%
TTCCAAACATCCCATAAACT+AGG - chr1_4:10911714-10911733 None:intergenic 35.0%
TTAGAGAAGATGCATTCTAG+AGG + chr1_4:10911908-10911927 Msa0149890:CDS 35.0%
TAGAGAAGATGCATTCTAGA+GGG + chr1_4:10911909-10911928 Msa0149890:CDS 35.0%
! GTGGATTTTTCATTACTGTG+CGG + chr1_4:10911969-10911988 Msa0149890:intron 35.0%
! TTTTTCATTACTGTGCGGAT+TGG + chr1_4:10911974-10911993 Msa0149890:intron 35.0%
!!! GCATTTTTTTTTTTTGGGGG+TGG + chr1_4:10912075-10912094 Msa0149890:intron 35.0%
!!! TTTTTTTTTTTTGGGGGTGG+GGG + chr1_4:10912078-10912097 Msa0149890:intron 35.0%
AATCTAGGTACACACACTAT+GGG - chr1_4:10912126-10912145 None:intergenic 35.0%
TAATCTAGGTACACACACTA+TGG - chr1_4:10912127-10912146 None:intergenic 35.0%
! AAGCTTTGTGTGTCCTTATT+AGG + chr1_4:10912146-10912165 Msa0149890:intron 35.0%
AAATTAGTTGGGGTCTAATG+TGG + chr1_4:10912181-10912200 Msa0149890:intron 35.0%
!!! TTTTTTCGGTTTTAGACCCA+CGG - chr1_4:10912216-10912235 None:intergenic 35.0%
ATTTGTTTCAGATACGTGCA+TGG + chr1_4:10912310-10912329 Msa0149890:intron 35.0%
! AAACCTGAGAACTTTTTGCT+TGG + chr1_4:10912340-10912359 Msa0149890:CDS 35.0%
! TTTTTCTCTTCATGAGTTCC+CGG - chr1_4:10912370-10912389 None:intergenic 35.0%
!!! AAGCTTTTTCTGGTTGATCT+TGG + chr1_4:10912388-10912407 Msa0149890:CDS 35.0%
!! TTTCTGGTTGATCTTGGTTT+AGG + chr1_4:10912394-10912413 Msa0149890:CDS 35.0%
! GTGTAAGTACCAACTTTTCT+GGG - chr1_4:10912436-10912455 None:intergenic 35.0%
! AGTGTAAGTACCAACTTTTC+TGG - chr1_4:10912437-10912456 None:intergenic 35.0%
ATCAACGTCCAGATGTATTT+AGG + chr1_4:10912571-10912590 Msa0149890:CDS 35.0%
ATTGCCATATTCTTGCAACA+GGG + chr1_4:10912666-10912685 Msa0149890:intron 35.0%
! ACACTAATTTTCCTTCTTCG+CGG + chr1_4:10912769-10912788 Msa0149890:CDS 35.0%
! CAGAGGATACACATATTTTC+TGG - chr1_4:10912947-10912966 None:intergenic 35.0%
AACTCAATAAACTGCCGAAA+AGG - chr1_4:10912977-10912996 None:intergenic 35.0%
!! TCACTTTTCGATGGAATTGT+TGG + chr1_4:10913046-10913065 Msa0149890:CDS 35.0%
ATTAGACCCATAAACACTGA+CGG + chr1_4:10913082-10913101 Msa0149890:CDS 35.0%
AGATTACTGTTTACAGGTGA+GGG + chr1_4:10913138-10913157 Msa0149890:intron 35.0%
CCAAAGAAGAAAGTCAGAAT+GGG + chr1_4:10913266-10913285 Msa0149890:CDS 35.0%
AAAACCTTTGCTTCATAGGT+CGG - chr1_4:10913331-10913350 None:intergenic 35.0%
GAAGAAAACCTTTGCTTCAT+AGG - chr1_4:10913335-10913354 None:intergenic 35.0%
!! GTCTCTGATCATTTTAACAC+TGG - chr1_4:10913381-10913400 None:intergenic 35.0%
GCATATCAGCAACATTGTAA+TGG - chr1_4:10913433-10913452 None:intergenic 35.0%
! ATATCCCTTTTCGATGTGTT+GGG - chr1_4:10913462-10913481 None:intergenic 35.0%
ATCGAAAAGGGATATGAAGA+TGG + chr1_4:10913467-10913486 Msa0149890:CDS 35.0%
TCGAAAAGGGATATGAAGAT+GGG + chr1_4:10913468-10913487 Msa0149890:CDS 35.0%
GGGTTATTTATCAGTAGTGT+AGG + chr1_4:10913488-10913507 Msa0149890:CDS 35.0%
! TAGGTTGTTGTTCTAACCTT+TGG + chr1_4:10913507-10913526 Msa0149890:CDS 35.0%
! AGGTTGTTGTTCTAACCTTT+GGG + chr1_4:10913508-10913527 Msa0149890:CDS 35.0%
! TTCTTCACAGTATTGGAACT+TGG + chr1_4:10913698-10913717 Msa0149890:intron 35.0%
TATTACATTAGTGCCATAGC+AGG + chr1_4:10913792-10913811 Msa0149890:CDS 35.0%
! TCGTTGGTTGTAATGTCAAA+AGG + chr1_4:10913831-10913850 Msa0149890:CDS 35.0%
TCGTTAAAGCTCTATTCTTC+AGG + chr1_4:10913858-10913877 Msa0149890:intron 35.0%
! TCTTCAGGCATTTGGTATTT+TGG + chr1_4:10913873-10913892 Msa0149890:intron 35.0%
ATAGGATTGCTGCAAGTATT+GGG - chr1_4:10914018-10914037 None:intergenic 35.0%
TATAGGATTGCTGCAAGTAT+TGG - chr1_4:10914019-10914038 None:intergenic 35.0%
ATACTTGCAGCAATCCTATA+AGG + chr1_4:10914019-10914038 Msa0149890:CDS 35.0%
GTGAATCATTTCCATTCAAG+TGG + chr1_4:10914045-10914064 Msa0149890:CDS 35.0%
! GATTTTCTGTATCCTAGTGA+AGG + chr1_4:10914274-10914293 Msa0149890:CDS 35.0%
GTTTCTTGAGTTTCATCAGT+CGG - chr1_4:10914394-10914413 None:intergenic 35.0%
TATACCTTGACATGAGTACT+AGG - chr1_4:10914436-10914455 None:intergenic 35.0%
ACACTGCTTTCTCTTAAATC+TGG + chr1_4:10914639-10914658 Msa0149890:three_prime_UTR 35.0%
!!! CTCTTAAATCTGGCTAGTTT+TGG + chr1_4:10914649-10914668 Msa0149890:three_prime_UTR 35.0%
ATGCATACATCAATGCAGAA+GGG - chr1_4:10914712-10914731 None:intergenic 35.0%
TATGCATACATCAATGCAGA+AGG - chr1_4:10914713-10914732 None:intergenic 35.0%
TCAAAAGGAAAGGAGAAAAG+AGG - chr1_4:10915006-10915025 None:intergenic 35.0%
TGAAGTCTTTAAGCTACTTC+TGG + chr1_4:10915023-10915042 Msa0149890:three_prime_UTR 35.0%
GTCAAATTCAGAAATCCAAG+AGG - chr1_4:10915049-10915068 None:intergenic 35.0%
ACTCCATGAAACACTCTTCA+TGG + chr1_4:10909995-10910014 Msa0149890:five_prime_UTR 40.0%
!!! GTTTTTCTGGTTCGAAGTTG+AGG - chr1_4:10910046-10910065 None:intergenic 40.0%
!!! GTGTTGTTACGGTTTTTAGC+AGG - chr1_4:10910151-10910170 None:intergenic 40.0%
ATGGATGATGACTGTGATAG+CGG + chr1_4:10910280-10910299 Msa0149890:CDS 40.0%
! TTTTGTGTAACAGGTTCAGG+TGG + chr1_4:10910482-10910501 Msa0149890:intron 40.0%
TTTGTGTAACAGGTTCAGGT+GGG + chr1_4:10910483-10910502 Msa0149890:intron 40.0%
GTAGATAGAAAGCTAGGGAA+AGG + chr1_4:10910525-10910544 Msa0149890:CDS 40.0%
GTTTATGTTGGTCGTCGTAT+TGG + chr1_4:10910561-10910580 Msa0149890:CDS 40.0%
! GTGTTATTGATTGGAGTTGG+CGG + chr1_4:10910757-10910776 Msa0149890:intron 40.0%
! TGTTATTGATTGGAGTTGGC+GGG + chr1_4:10910758-10910777 Msa0149890:intron 40.0%
ACAACACTGTACTTGTATGG+CGG - chr1_4:10910797-10910816 None:intergenic 40.0%
! TCAATGGTAACGATGGTAGA+TGG + chr1_4:10910899-10910918 Msa0149890:intron 40.0%
!! GCTCAAGCTTTAAGCAAAAG+CGG - chr1_4:10911107-10911126 None:intergenic 40.0%
!!! GTTTTTTTATCGAGGGCTAG+GGG + chr1_4:10911624-10911643 Msa0149890:intron 40.0%
TTGCAGGTCATGGATATTCT+TGG + chr1_4:10911687-10911706 Msa0149890:intron 40.0%
!! CTTTAGGATGTCTGCTGAAA+TGG + chr1_4:10911853-10911872 Msa0149890:intron 40.0%
TTGGATATAGCTGGCATCTT+TGG + chr1_4:10911993-10912012 Msa0149890:intron 40.0%
!!! TTTTTTTTTTTGGGGGTGGG+GGG + chr1_4:10912079-10912098 Msa0149890:intron 40.0%
GGACACACAAAGCTTAATCT+AGG - chr1_4:10912141-10912160 None:intergenic 40.0%
TCTGATCAAAATCCAGGCTT+TGG + chr1_4:10912628-10912647 Msa0149890:intron 40.0%
GATTGCCATATTCTTGCAAC+AGG + chr1_4:10912665-10912684 Msa0149890:intron 40.0%
TTGCCATATTCTTGCAACAG+GGG + chr1_4:10912667-10912686 Msa0149890:intron 40.0%
AGGTAGCAGAAGAGATGATT+TGG + chr1_4:10912732-10912751 Msa0149890:CDS 40.0%
! TAATTTTCCTTCTTCGCGGA+CGG + chr1_4:10912773-10912792 Msa0149890:CDS 40.0%
TAGCTGCAGGGTGAAAATAA+AGG + chr1_4:10912887-10912906 Msa0149890:intron 40.0%
!! GATACACATATTTTCTGGCG+AGG - chr1_4:10912942-10912961 None:intergenic 40.0%
AATAAACTGCCGAAAAGGTG+CGG - chr1_4:10912972-10912991 None:intergenic 40.0%
ATGGGTCTAATGTCTGGATT+TGG - chr1_4:10913073-10913092 None:intergenic 40.0%
GTGTTTATGGGTCTAATGTC+TGG - chr1_4:10913079-10913098 None:intergenic 40.0%
GAGATTACTGTTTACAGGTG+AGG + chr1_4:10913137-10913156 Msa0149890:intron 40.0%
TAAGCTTAACAGCACAAACC+AGG - chr1_4:10913187-10913206 None:intergenic 40.0%
!! TATCAGGTTGGACAAAAGAG+AGG + chr1_4:10913209-10913228 Msa0149890:intron 40.0%
GCCAAAGAAGAAAGTCAGAA+TGG + chr1_4:10913265-10913284 Msa0149890:CDS 40.0%
CCCATTCTGACTTTCTTCTT+TGG - chr1_4:10913269-10913288 None:intergenic 40.0%
ACACTAATCCATTGTGTTGC+TGG - chr1_4:10913296-10913315 None:intergenic 40.0%
AGCAACATTGTAATGGTACC+TGG - chr1_4:10913426-10913445 None:intergenic 40.0%
TTGTCCCAACACATCGAAAA+GGG + chr1_4:10913455-10913474 Msa0149890:CDS 40.0%
! CATATCCCTTTTCGATGTGT+TGG - chr1_4:10913463-10913482 None:intergenic 40.0%
!! TAACCTTTGGGCACTGATTA+TGG + chr1_4:10913520-10913539 Msa0149890:CDS 40.0%
AACAACCTTGTGAAGGAAGA+AGG - chr1_4:10913588-10913607 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG + chr1_4:10913760-10913779 Msa0149890:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG + chr1_4:10913761-10913780 Msa0149890:intron 40.0%
CCATAGCAGGATCTAATAGT+GGG + chr1_4:10913805-10913824 Msa0149890:CDS 40.0%
AGCTCTATTCTTCAGGCATT+TGG + chr1_4:10913865-10913884 Msa0149890:intron 40.0%
TTTGGCGACAGTAAATTGAC+TGG + chr1_4:10913891-10913910 Msa0149890:intron 40.0%
ACTATGTCTCTCACTTCTAC+TGG + chr1_4:10913972-10913991 Msa0149890:intron 40.0%
! CACTTCTACTGGTGATTTGT+TGG + chr1_4:10913983-10914002 Msa0149890:intron 40.0%
!! ACTGGTGATTTGTTGGTTTC+AGG + chr1_4:10913990-10914009 Msa0149890:intron 40.0%
!! CTGGTGATTTGTTGGTTTCA+GGG + chr1_4:10913991-10914010 Msa0149890:intron 40.0%
! AGGATTTTTCGTCACTGCTA+TGG + chr1_4:10914088-10914107 Msa0149890:CDS 40.0%
CTTCGATGAATACCTTCACT+AGG - chr1_4:10914289-10914308 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG + chr1_4:10914287-10914306 Msa0149890:CDS 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG + chr1_4:10914291-10914310 Msa0149890:CDS 40.0%
TAGCAGCAGTTGAAGTAATG+CGG - chr1_4:10914327-10914346 None:intergenic 40.0%
!! TCATCAGTCGGTTTTCTTCT+TGG - chr1_4:10914382-10914401 None:intergenic 40.0%
CTTTCCTAGTACTCATGTCA+AGG + chr1_4:10914429-10914448 Msa0149890:CDS 40.0%
CTGAATCTCAGAAAGCTTCA+CGG - chr1_4:10914593-10914612 None:intergenic 40.0%
!!! AATCTGGCTAGTTTTGGAAC+TGG + chr1_4:10914655-10914674 Msa0149890:three_prime_UTR 40.0%
GCTACTATAAGTTTCCAGTG+TGG + chr1_4:10914943-10914962 Msa0149890:three_prime_UTR 40.0%
!! GCTCCATGAAGAGTGTTTCA+TGG - chr1_4:10910001-10910020 None:intergenic 45.0%
!! TTTCTGGTTCGAAGTTGAGG+AGG - chr1_4:10910043-10910062 None:intergenic 45.0%
!!! TTCGGGTTTTGATTCGGACT+CGG - chr1_4:10910082-10910101 None:intergenic 45.0%
!!! ATCGGGTTCGGGTTTTGATT+CGG - chr1_4:10910088-10910107 None:intergenic 45.0%
TTGTACTTGATCACGTGCAG+CGG - chr1_4:10910188-10910207 None:intergenic 45.0%
TCACGTGCCGGAACAAATTA+GGG + chr1_4:10910237-10910256 Msa0149890:CDS 45.0%
GATAGAAAGCTAGGGAAAGG+AGG + chr1_4:10910528-10910547 Msa0149890:CDS 45.0%
! AAGCTAGGGAAAGGAGGTTT+TGG + chr1_4:10910534-10910553 Msa0149890:CDS 45.0%
GCCATACAAGTACAGTGTTG+TGG + chr1_4:10910796-10910815 Msa0149890:intron 45.0%
GCCACAACACTGTACTTGTA+TGG - chr1_4:10910800-10910819 None:intergenic 45.0%
AAGTACAGTGTTGTGGCCTA+TGG + chr1_4:10910803-10910822 Msa0149890:intron 45.0%
! ATGGTAACGATGGTAGATGG+CGG + chr1_4:10910902-10910921 Msa0149890:intron 45.0%
ACTCTCATGTGGAGTTTGCA+AGG - chr1_4:10911148-10911167 None:intergenic 45.0%
TGCAAACTCCACATGAGAGT+TGG + chr1_4:10911148-10911167 Msa0149890:intron 45.0%
ATTATGGACCTCCTTACGAG+TGG + chr1_4:10911417-10911436 Msa0149890:CDS 45.0%
TTGTAAACCTGCCACTCGTA+AGG - chr1_4:10911431-10911450 None:intergenic 45.0%
AGTGTATTAGGAGGTAGCCA+TGG + chr1_4:10911530-10911549 Msa0149890:intron 45.0%
TGTCCCACGAGTTCATTACA+AGG + chr1_4:10911553-10911572 Msa0149890:CDS 45.0%
GTCCCACGAGTTCATTACAA+GGG + chr1_4:10911554-10911573 Msa0149890:CDS 45.0%
GTCCCTTGTAATGAACTCGT+GGG - chr1_4:10911559-10911578 None:intergenic 45.0%
CACGAGTTCATTACAAGGGA+CGG + chr1_4:10911558-10911577 Msa0149890:CDS 45.0%
GCAAGGTGATTGGTATGTCA+TGG + chr1_4:10911580-10911599 Msa0149890:CDS 45.0%
GCCCTAGTTTATGGGATGTT+TGG + chr1_4:10911709-10911728 Msa0149890:CDS 45.0%
GTTAAACCGTGAAAGCCACA+AGG - chr1_4:10912045-10912064 None:intergenic 45.0%
TGTGGCTTTCACGGTTTAAC+AGG + chr1_4:10912045-10912064 Msa0149890:intron 45.0%
!!! TTTTTTTTTTGGGGGTGGGG+GGG + chr1_4:10912080-10912099 Msa0149890:intron 45.0%
TTGGGGTCTAATGTGGCTTT+AGG + chr1_4:10912188-10912207 Msa0149890:intron 45.0%
!! TAATGTGGCTTTAGGATCCG+TGG + chr1_4:10912196-10912215 Msa0149890:intron 45.0%
!! AATGTGGCTTTAGGATCCGT+GGG + chr1_4:10912197-10912216 Msa0149890:intron 45.0%
TCTACCTTGCCCAGAAAAGT+TGG + chr1_4:10912424-10912443 Msa0149890:intron 45.0%
! AGTACCAACTTTTCTGGGCA+AGG - chr1_4:10912431-10912450 None:intergenic 45.0%
CGTCAAAATCAACCAAAGCC+TGG - chr1_4:10912643-10912662 None:intergenic 45.0%
GTTCCCCTGTTGCAAGAATA+TGG - chr1_4:10912673-10912692 None:intergenic 45.0%
GCTAGTGTACATGCTCATCT+TGG + chr1_4:10912703-10912722 Msa0149890:CDS 45.0%
GTGTACATGCTCATCTTGGT+AGG + chr1_4:10912707-10912726 Msa0149890:CDS 45.0%
!! ACACATATTTTCTGGCGAGG+TGG - chr1_4:10912939-10912958 None:intergenic 45.0%
! ATAAACTGCCGAAAAGGTGC+GGG - chr1_4:10912971-10912990 None:intergenic 45.0%
TCGGCAGTTTATTGAGTTCG+TGG + chr1_4:10912979-10912998 Msa0149890:CDS 45.0%
! TGAGCACCGTCAGTGTTTAT+GGG - chr1_4:10913091-10913110 None:intergenic 45.0%
AGGTTGGACAAAAGAGAGGA+CGG + chr1_4:10913213-10913232 Msa0149890:intron 45.0%
CTCATCATCATCTCCTTCCA+TGG - chr1_4:10913243-10913262 None:intergenic 45.0%
GTTGTCCCAACACATCGAAA+AGG + chr1_4:10913454-10913473 Msa0149890:CDS 45.0%
CATCCATAATCAGTGCCCAA+AGG - chr1_4:10913526-10913545 None:intergenic 45.0%
CTCATCCTTCTTCCTTCACA+AGG + chr1_4:10913580-10913599 Msa0149890:CDS 45.0%
GCCATAGCAGGATCTAATAG+TGG + chr1_4:10913804-10913823 Msa0149890:CDS 45.0%
CCCACTATTAGATCCTGCTA+TGG - chr1_4:10913808-10913827 None:intergenic 45.0%
! ATCTAATAGTGGGAGCTCGT+TGG + chr1_4:10913815-10913834 Msa0149890:CDS 45.0%
AGTGAGAGACATAGTCACAC+AGG - chr1_4:10913967-10913986 None:intergenic 45.0%
ATCTGAAAATCCAGCACCAC+GGG - chr1_4:10914147-10914166 None:intergenic 45.0%
GATCTGAAAATCCAGCACCA+CGG - chr1_4:10914148-10914167 None:intergenic 45.0%
!! TGGTGCTGGATTTTCAGATC+AGG + chr1_4:10914148-10914167 Msa0149890:CDS 45.0%
GAAAATCAAGCTCCACAACC+TGG - chr1_4:10914261-10914280 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG + chr1_4:10914290-10914309 Msa0149890:CDS 45.0%
ATTCATCGAAGGTGGGACAA+TGG + chr1_4:10914298-10914317 Msa0149890:CDS 45.0%
AACTGCTGCTACATATGACC+AGG + chr1_4:10914336-10914355 Msa0149890:CDS 45.0%
TACTAAGAACAAGAGCAGCC+TGG - chr1_4:10914357-10914376 None:intergenic 45.0%
ATCCTCTCTGACAAGTTTGC+CGG + chr1_4:10914680-10914699 Msa0149890:three_prime_UTR 45.0%
CAATGCAGAAGGGATTTGTC+CGG - chr1_4:10914702-10914721 None:intergenic 45.0%
CTTTCTATCAAGACTCACCC+AGG - chr1_4:10914841-10914860 None:intergenic 45.0%
TCAGCTGTGCATCTTGAACT+TGG + chr1_4:10914979-10914998 Msa0149890:three_prime_UTR 45.0%
TTAAGCTACTTCTGGCCTCT+TGG + chr1_4:10915031-10915050 Msa0149890:three_prime_UTR 45.0%
GAGAATAGAACCGACGCAGA+TGG - chr1_4:10909914-10909933 None:intergenic 50.0%
CTGGAAGATTCGAACGACGA+CGG - chr1_4:10909968-10909987 None:intergenic 50.0%
!!! CGGACTCGGGTTTTGTTGTT+TGG - chr1_4:10910068-10910087 None:intergenic 50.0%
!!! TCGGGTTTTGATTCGGACTC+GGG - chr1_4:10910081-10910100 None:intergenic 50.0%
ACCTCTTCTACCTCGTGTAG+CGG - chr1_4:10910125-10910144 None:intergenic 50.0%
AAACGAACAACCTCACGTGC+CGG + chr1_4:10910225-10910244 Msa0149890:CDS 50.0%
!! CTAATTTGTTCCGGCACGTG+AGG - chr1_4:10910238-10910257 None:intergenic 50.0%
CTCACGTGCCGGAACAAATT+AGG + chr1_4:10910236-10910255 Msa0149890:CDS 50.0%
!! GATGATGACTGTGATAGCGG+CGG + chr1_4:10910283-10910302 Msa0149890:CDS 50.0%
AACCGCAGCTGATAAAGGTC+CGG + chr1_4:10910312-10910331 Msa0149890:CDS 50.0%
AACCGGACCTTTATCAGCTG+CGG - chr1_4:10910317-10910336 None:intergenic 50.0%
GTCCGGTTGCTGAAGATGAA+GGG + chr1_4:10910329-10910348 Msa0149890:CDS 50.0%
CTCCCTTCATCTTCAGCAAC+CGG - chr1_4:10910334-10910353 None:intergenic 50.0%
CCATCATACCTCAACAGCAC+CGG - chr1_4:10910595-10910614 None:intergenic 50.0%
! TGGTAACGATGGTAGATGGC+GGG + chr1_4:10910903-10910922 Msa0149890:intron 50.0%
TAAACCTGCCACTCGTAAGG+AGG - chr1_4:10911428-10911447 None:intergenic 50.0%
GGCAGGTTTACAAGTGAGTG+TGG + chr1_4:10911438-10911457 Msa0149890:intron 50.0%
AATGAACTCGTGGGACACCA+TGG - chr1_4:10911550-10911569 None:intergenic 50.0%
CGTCCCTTGTAATGAACTCG+TGG - chr1_4:10911560-10911579 None:intergenic 50.0%
GTTCATTACAAGGGACGGCA+AGG + chr1_4:10911563-10911582 Msa0149890:CDS 50.0%
CGTAAGTTCATCTCTCGTGC+TGG + chr1_4:10911748-10911767 Msa0149890:intron 50.0%
! GGTGTCGTGTATAGCAATCG+AGG + chr1_4:10911874-10911893 Msa0149890:CDS 50.0%
!! CTGTGCGGATTGGATATAGC+TGG + chr1_4:10911984-10912003 Msa0149890:intron 50.0%
GGCAATTTCAGTTGCCAGAC+TGG + chr1_4:10912014-10912033 Msa0149890:intron 50.0%
GTCTCACCTTGTGGCTTTCA+CGG + chr1_4:10912036-10912055 Msa0149890:intron 50.0%
GGGCCAAGCAAAAAGTTCTC+AGG - chr1_4:10912346-10912365 None:intergenic 50.0%
! GAACTTTTTGCTTGGCCCTC+CGG + chr1_4:10912348-10912367 Msa0149890:CDS 50.0%
! AACTTTTTGCTTGGCCCTCC+GGG + chr1_4:10912349-10912368 Msa0149890:CDS 50.0%
TCTCTTCATGAGTTCCCGGA+GGG - chr1_4:10912366-10912385 None:intergenic 50.0%
TTCTCTTCATGAGTTCCCGG+AGG - chr1_4:10912367-10912386 None:intergenic 50.0%
TTTGCCATGCAGCAACTCGT+TGG + chr1_4:10912514-10912533 Msa0149890:intron 50.0%
CGTTGGCGTGATAATTCGAC+TGG + chr1_4:10912531-10912550 Msa0149890:CDS 50.0%
CATGCTCATCTTGGTAGGAC+AGG + chr1_4:10912712-10912731 Msa0149890:CDS 50.0%
ATGACCTGGTATCCTTGCCA+GGG - chr1_4:10912802-10912821 None:intergenic 50.0%
TATGACCTGGTATCCTTGCC+AGG - chr1_4:10912803-10912822 None:intergenic 50.0%
! CTGAGCACCGTCAGTGTTTA+TGG - chr1_4:10913092-10913111 None:intergenic 50.0%
AAACACTGACGGTGCTCAGA+AGG + chr1_4:10913093-10913112 Msa0149890:CDS 50.0%
AAAGAGAGGACGGTTGACCA+TGG + chr1_4:10913223-10913242 Msa0149890:CDS 50.0%
TGGGAATGCCAGCAACACAA+TGG + chr1_4:10913285-10913304 Msa0149890:CDS 50.0%
!! TGGGCACTGATTATGGATGC+CGG + chr1_4:10913527-10913546 Msa0149890:CDS 50.0%
TTGTGCAGTGAAACCAGTGC+CGG - chr1_4:10913549-10913568 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG + chr1_4:10914128-10914147 Msa0149890:CDS 50.0%
ATTGTTATGTCCCGTGGTGC+TGG + chr1_4:10914134-10914153 Msa0149890:CDS 50.0%
GGACACAGCACAATCAACTG+CGG - chr1_4:10914461-10914480 None:intergenic 50.0%
TAAGTTTCCAGTGTGGCCAC+TGG + chr1_4:10914950-10914969 Msa0149890:three_prime_UTR 50.0%
AAAATGTCCAGTGGCCACAC+TGG - chr1_4:10914960-10914979 None:intergenic 50.0%
GCACAGCTGAAAATGTCCAG+TGG - chr1_4:10914969-10914988 None:intergenic 50.0%
TTCACCCTCTCCATCTGCGT+CGG + chr1_4:10909901-10909920 Msa0149890:five_prime_UTR 55.0%
AGAACCGACGCAGATGGAGA+GGG - chr1_4:10909908-10909927 None:intergenic 55.0%
TAGAACCGACGCAGATGGAG+AGG - chr1_4:10909909-10909928 None:intergenic 55.0%
TCGGGTTTAGCGATCGGGTT+CGG - chr1_4:10910100-10910119 None:intergenic 55.0%
!! TCTACCTCGTGTAGCGGGTT+CGG - chr1_4:10910119-10910138 None:intergenic 55.0%
CCTCTTCTACCTCGTGTAGC+GGG - chr1_4:10910124-10910143 None:intergenic 55.0%
TACTTGATCACGTGCAGCGG+CGG - chr1_4:10910185-10910204 None:intergenic 55.0%
!! ATGACTGTGATAGCGGCGGT+GGG + chr1_4:10910287-10910306 Msa0149890:CDS 55.0%
GGGAGAACCGCAGCTGATAA+AGG + chr1_4:10910307-10910326 Msa0149890:CDS 55.0%
GGTCCGGTTGCTGAAGATGA+AGG + chr1_4:10910328-10910347 Msa0149890:CDS 55.0%
GTGTAACAGGTTCAGGTGGG+TGG + chr1_4:10910486-10910505 Msa0149890:intron 55.0%
! GTTGGTCGTCGTATTGGTGC+CGG + chr1_4:10910567-10910586 Msa0149890:CDS 55.0%
!! CCGGTGCTGTTGAGGTATGA+TGG + chr1_4:10910592-10910611 Msa0149890:intron 55.0%
ACAAGGGACGGCAAGGTGAT+TGG + chr1_4:10911570-10911589 Msa0149890:CDS 55.0%
! TCCTCTGTCCCGCACCTTTT+CGG + chr1_4:10912960-10912979 Msa0149890:CDS 55.0%
AGAGGACGGTTGACCATGGA+AGG + chr1_4:10913227-10913246 Msa0149890:CDS 55.0%
CTGATTATGGATGCCGGCAC+TGG + chr1_4:10913533-10913552 Msa0149890:CDS 55.0%
TGGCCACTGCTGGAAGTAGA+TGG + chr1_4:10914108-10914127 Msa0149890:CDS 55.0%
GGCCACTGCTGGAAGTAGAT+GGG + chr1_4:10914109-10914128 Msa0149890:CDS 55.0%
TGCCCATCTACTTCCAGCAG+TGG - chr1_4:10914114-10914133 None:intergenic 55.0%
GTCCGGCAAACTTGTCAGAG+AGG - chr1_4:10914685-10914704 None:intergenic 55.0%
CGGGTTTAGCGATCGGGTTC+GGG - chr1_4:10910099-10910118 None:intergenic 60.0%
! CGGGTTCGGGTTTAGCGATC+GGG - chr1_4:10910105-10910124 None:intergenic 60.0%
! GCGGGTTCGGGTTTAGCGAT+CGG - chr1_4:10910106-10910125 None:intergenic 60.0%
AAACCCGAACCCGCTACACG+AGG + chr1_4:10910112-10910131 Msa0149890:CDS 60.0%
!! CTACCTCGTGTAGCGGGTTC+GGG - chr1_4:10910118-10910137 None:intergenic 60.0%
CCCGCTACACGAGGTAGAAG+AGG + chr1_4:10910121-10910140 Msa0149890:CDS 60.0%
!! CGGCGGCGATGGTGTTGTTA+CGG - chr1_4:10910162-10910181 None:intergenic 60.0%
!! GATGACTGTGATAGCGGCGG+TGG + chr1_4:10910286-10910305 Msa0149890:CDS 60.0%
!! TACCTCAACAGCACCGGCTC+CGG - chr1_4:10910589-10910608 None:intergenic 60.0%
!! CGATGGTAGATGGCGGGTGA+TGG + chr1_4:10910909-10910928 Msa0149890:intron 60.0%
TGGACCTCCTTACGAGTGGC+AGG + chr1_4:10911421-10911440 Msa0149890:CDS 60.0%
!! GCCAGACTGGTCTCACCTTG+TGG + chr1_4:10912027-10912046 Msa0149890:intron 60.0%
GCCACAAGGTGAGACCAGTC+TGG - chr1_4:10912031-10912050 None:intergenic 60.0%
!!! TTTTTTTGGGGGTGGGGGGG+TGG + chr1_4:10912083-10912102 Msa0149890:intron 60.0%
!!! TTTTTTGGGGGTGGGGGGGT+GGG + chr1_4:10912084-10912103 Msa0149890:intron 60.0%
CACGCCAACGAGTTGCTGCA+TGG - chr1_4:10912521-10912540 None:intergenic 60.0%
GCTACCCTGGCAAGGATACC+AGG + chr1_4:10912795-10912814 Msa0149890:CDS 60.0%
GTCACTGCTATGGCCACTGC+TGG + chr1_4:10914098-10914117 Msa0149890:CDS 60.0%
TTGATCACGTGCAGCGGCGG+CGG - chr1_4:10910182-10910201 None:intergenic 65.0%
!! CGTCGTATTGGTGCCGGAGC+CGG + chr1_4:10910573-10910592 Msa0149890:CDS 65.0%
!! TTTTTGGGGGTGGGGGGGTG+GGG + chr1_4:10912085-10912104 Msa0149890:intron 65.0%
AGGGTAGCCGTCCGCGAAGA+AGG - chr1_4:10912783-10912802 None:intergenic 65.0%
TTCTTCGCGGACGGCTACCC+TGG + chr1_4:10912782-10912801 Msa0149890:CDS 65.0%
! GCCGAAAAGGTGCGGGACAG+AGG - chr1_4:10912964-10912983 None:intergenic 65.0%
!! TGCCGGAGCCGGTGCTGTTG+AGG + chr1_4:10910584-10910603 Msa0149890:CDS 70.0%
!! TTTTGGGGGTGGGGGGGTGG+GGG + chr1_4:10912086-10912105 Msa0149890:intron 70.0%
ATCACGTGCAGCGGCGGCGG+CGG - chr1_4:10910179-10910198 None:intergenic 75.0%
TTTGGGGGTGGGGGGGTGGG+GGG + chr1_4:10912087-10912106 Msa0149890:intron 75.0%
CGCGGACGGCTACCCTGGCA+AGG + chr1_4:10912787-10912806 Msa0149890:CDS 75.0%
! TTGGGGGTGGGGGGGTGGGG+GGG + chr1_4:10912088-10912107 Msa0149890:intron 80.0%
! TGCAGCGGCGGCGGCGGCGA+TGG - chr1_4:10910173-10910192 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10909827 10915149 10909827 ID=Msa0149890;Name=Msa0149890
chr1_4 mRNA 10909827 10915149 10909827 ID=Msa0149890-mRNA-1;Parent=Msa0149890;Name=Msa0149890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=210|0.93|0.93|1|1|1|16|561|678
chr1_4 exon 10909827 10910375 10909827 ID=Msa0149890-mRNA-1:exon:4573;Parent=Msa0149890-mRNA-1
chr1_4 exon 10910495 10910605 10910495 ID=Msa0149890-mRNA-1:exon:4574;Parent=Msa0149890-mRNA-1
chr1_4 exon 10911377 10911450 10911377 ID=Msa0149890-mRNA-1:exon:4575;Parent=Msa0149890-mRNA-1
chr1_4 exon 10911532 10911601 10911532 ID=Msa0149890-mRNA-1:exon:4576;Parent=Msa0149890-mRNA-1
chr1_4 exon 10911693 10911748 10911693 ID=Msa0149890-mRNA-1:exon:4577;Parent=Msa0149890-mRNA-1
chr1_4 exon 10911859 10911930 10911859 ID=Msa0149890-mRNA-1:exon:4578;Parent=Msa0149890-mRNA-1
chr1_4 exon 10912321 10912415 10912321 ID=Msa0149890-mRNA-1:exon:4579;Parent=Msa0149890-mRNA-1
chr1_4 exon 10912526 10912592 10912526 ID=Msa0149890-mRNA-1:exon:4580;Parent=Msa0149890-mRNA-1
chr1_4 exon 10912687 10912816 10912687 ID=Msa0149890-mRNA-1:exon:4581;Parent=Msa0149890-mRNA-1
chr1_4 exon 10912896 10913114 10912896 ID=Msa0149890-mRNA-1:exon:4582;Parent=Msa0149890-mRNA-1
chr1_4 exon 10913215 10913345 10913215 ID=Msa0149890-mRNA-1:exon:4583;Parent=Msa0149890-mRNA-1
chr1_4 exon 10913427 10913601 10913427 ID=Msa0149890-mRNA-1:exon:4584;Parent=Msa0149890-mRNA-1
chr1_4 exon 10913762 10913852 10913762 ID=Msa0149890-mRNA-1:exon:4585;Parent=Msa0149890-mRNA-1
chr1_4 exon 10914012 10914169 10914012 ID=Msa0149890-mRNA-1:exon:4586;Parent=Msa0149890-mRNA-1
chr1_4 exon 10914262 10914450 10914262 ID=Msa0149890-mRNA-1:exon:4587;Parent=Msa0149890-mRNA-1
chr1_4 exon 10914529 10915149 10914529 ID=Msa0149890-mRNA-1:exon:4588;Parent=Msa0149890-mRNA-1
chr1_4 five_prime_UTR 10909827 10910036 10909827 ID=Msa0149890-mRNA-1:five_prime_utr;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10910037 10910375 10910037 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10910495 10910605 10910495 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10911377 10911450 10911377 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10911532 10911601 10911532 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10911693 10911748 10911693 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10911859 10911930 10911859 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10912321 10912415 10912321 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10912526 10912592 10912526 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10912687 10912816 10912687 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10912896 10913114 10912896 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10913215 10913345 10913215 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10913427 10913601 10913427 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10913762 10913852 10913762 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10914012 10914169 10914012 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10914262 10914450 10914262 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 CDS 10914529 10914588 10914529 ID=Msa0149890-mRNA-1:cds;Parent=Msa0149890-mRNA-1
chr1_4 three_prime_UTR 10914589 10915149 10914589 ID=Msa0149890-mRNA-1:three_prime_utr;Parent=Msa0149890-mRNA-1
Gene Sequence

>Msa0149890

ATGCCTCCTCAACTTCGAACCAGAAAAACCAAACAACAAAACCCGAGTCCGAATCAAAACCCGAACCCGATCGCTAAACCCGAACCCGCTACACGAGGTAGAAGAGGTAGACCTGCTAAAAACCGTAACAACACCATCGCCGCCGCCGCCGCTGCACGTGATCAAGTACAAGAACAACAACAACAACAAAACGAACAACCTCACGTGCCGGAACAAATTAGGGTTTCTGATAAGCAAGAGATTATGGATGATGACTGTGATAGCGGCGGTGGGAGAACCGCAGCTGATAAAGGTCCGGTTGCTGAAGATGAAGGGAGTACACCGCCTATTCCTGAAAAAGTTCAGGTGGGTGGTTCACCGATGTACAGAGTAGATAGAAAGCTAGGGAAAGGAGGTTTTGGACAAGTTTATGTTGGTCGTCGTATTGGTGCCGGAGCCGGTGCTGTTGAGGTGGCTTTGAAATTTGAGCATAAAACCAGTAAAGGGTGTAATTATGGACCTCCTTACGAGTGGCAGGTTTACAATGTATTAGGAGGTAGCCATGGTGTCCCACGAGTTCATTACAAGGGACGGCAAGGTGATTGGTATGTCATGGTCATGGATATTCTTGGCCCTAGTTTATGGGATGTTTGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGTCGTGTATAGCAATCGAGGCTGTTTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGTGACGTAAAACCTGAGAACTTTTTGCTTGGCCCTCCGGGAACTCATGAAGAGAAAAAGCTTTTTCTGGTTGATCTTGGTTTAGCAACTCGTTGGCGTGATAATTCGACTGGTCTTCATGTTGATTACGATCAACGTCCAGATGTATTTAGGGGAACTGTTCGTTATGCTAGTGTACATGCTCATCTTGGTAGGACAGGTAGCAGAAGAGATGATTTGGAATCTCTTGCATACACACTAATTTTCCTTCTTCGCGGACGGCTACCCTGGCAAGGATACCAGGGTGAAAATAAAGGATTTCTTGTTTGCAAGAAGAAAATGGCCACCTCGCCAGAAAATATGTGTATCCTCTGTCCCGCACCTTTTCGGCAGTTTATTGAGTTCGTGGTGAATTTGAAGTTCGACGAAGAACCAAATTATGCCAAATATATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATTAGACCCATAAACACTGACGGTGCTCAGAAGGTTGGACAAAAGAGAGGACGGTTGACCATGGAAGGAGATGATGATGAGCAGCCAAAGAAGAAAGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCGCGCCGACCTATGAAGCAAAGGTACCATTACAATGTTGCTGATATGCGGTTGTCCCAACACATCGAAAAGGGATATGAAGATGGGTTATTTATCAGTAGTGTAGGTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTTCTTCCTTCACAAGGAATGGATTATGGAACAGTGGGAAAAAAATTATTACATTAGTGCCATAGCAGGATCTAATAGTGGGAGCTCGTTGGTTGTAATGTCAAAAGGGACCCAATACTTGCAGCAATCCTATAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTCGTCACTGCTATGGCCACTGCTGGAAGTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTTCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAATGGTTACCGCATTACTTCAACTGCTGCTACATATGACCAGGCTGCTCTTGTTCTTAGTATTCCAAGAAGAAAACCGACTGATGAAACTCAAGAAACACTTCGCACATCTGACTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGAAGAACTGTTTCATGA
Protein sequence

>Msa0149890

MPPQLRTRKTKQQNPSPNQNPNPIAKPEPATRGRRGRPAKNRNNTIAAAAAARDQVQEQQQQQNEQPHVPEQIRVSDKQEIMDDDCDSGGGRTAADKGPVAEDEGSTPPIPEKVQVGGSPMYRVDRKLGKGGFGQVYVGRRIGAGAGAVEVALKFEHKTSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDWYVMVMDILGPSLWDVWNNKTHTMSAEMVSCIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTHEEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEFVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKVGQKRGRLTMEGDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGYEDGLFISSVGCCSNLWALIMDAGTGFTAQVYELSSFFLHKEWIMEQWEKNYYISAIAGSNSGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATYDQAALVLSIPRRKPTDETQETLRTSDFPSTHVKEKWAKNLYIASICYGRTVS*