AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0009220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009220 MtrunA17_Chr1g0157701 98.671 677 6 2 1 677 1 674 0.0 1363
Msa0009220 MtrunA17_Chr3g0139891 70.349 688 166 9 1 672 1 666 0.0 922
Msa0009220 MtrunA17_Chr3g0125541 51.233 365 156 6 4 362 7 355 6.51e-108 336
Msa0009220 MtrunA17_Chr7g0244381 49.265 272 127 2 7 273 15 280 6.53e-89 293
Msa0009220 MtrunA17_Chr3g0131021 41.696 283 149 5 1 277 1 273 5.12e-61 211
Msa0009220 MtrunA17_Chr8g0385261 39.223 283 162 4 1 279 1 277 2.78e-58 202
Msa0009220 MtrunA17_Chr5g0395341 31.985 272 168 9 2 266 48 309 1.07e-33 133
Msa0009220 MtrunA17_Chr4g0039841 33.333 276 166 10 5 266 78 349 4.56e-23 102
Msa0009220 MtrunA17_Chr7g0261361 28.028 289 172 10 5 271 41 315 1.89e-20 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009220 AT4G32760.1 57.384 711 233 21 1 677 1 675 0.0 690
Msa0009220 AT4G32760.2 57.042 710 238 19 1 677 1 676 0.0 687
Msa0009220 AT4G32760.3 65.618 477 137 10 1 474 1 453 0.0 593
Msa0009220 AT3G08790.1 48.159 706 238 28 1 677 1 607 1.17e-179 525
Msa0009220 AT1G21380.1 59.259 270 105 3 4 272 7 272 1.87e-105 330
Msa0009220 AT1G76970.2 57.534 292 107 5 4 293 7 283 2.06e-104 325
Msa0009220 AT1G76970.3 57.534 292 107 5 4 293 7 283 2.06e-104 325
Msa0009220 AT1G76970.6 57.534 292 107 5 4 293 7 283 2.06e-104 325
Msa0009220 AT1G76970.1 57.534 292 107 5 4 293 7 283 2.06e-104 325
Msa0009220 AT1G76970.7 56.107 262 98 5 34 293 11 257 9.56e-85 273
Msa0009220 AT1G76970.4 56.107 262 98 5 34 293 11 257 9.56e-85 273
Msa0009220 AT2G38410.1 44.839 310 122 3 7 270 13 319 5.10e-77 260
Msa0009220 AT5G01760.1 45.455 275 141 4 2 271 22 292 1.48e-75 253
Msa0009220 AT5G63640.1 43.223 273 151 3 1 272 1 270 2.62e-65 223
Msa0009220 AT5G63640.2 43.223 273 151 3 1 272 1 270 2.62e-65 223
Msa0009220 AT1G76970.5 56.667 210 74 5 86 293 1 195 4.24e-64 216
Msa0009220 AT5G16880.4 33.577 274 163 11 3 266 49 313 1.05e-33 134
Msa0009220 AT5G16880.1 33.577 274 163 11 3 266 49 313 1.05e-33 134
Msa0009220 AT5G16880.2 33.577 274 163 11 3 266 49 313 1.05e-33 134
Msa0009220 AT5G16880.3 34.524 252 150 10 3 247 49 292 3.27e-31 124
Msa0009220 AT1G06210.1 28.674 279 173 10 1 263 37 305 1.49e-21 97.8
Msa0009220 AT1G06210.2 27.907 215 134 7 5 205 41 248 4.96e-13 70.5

Find 254 sgRNAs with CRISPR-Local

Find 726 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGGTTGTTGGGTTGGC+TGG 0.136651 1_1:+13441370 None:intergenic
ATAATTGATTCCTATAATTT+TGG 0.177177 1_1:+13439969 None:intergenic
AAAGATTCCGGCGATGAATT+TGG 0.225679 1_1:+13449931 None:intergenic
CAACTTACTTCTTTGTTGTT+AGG 0.228067 1_1:+13444995 None:intergenic
TTTGGATGTACCAAAATTAT+AGG 0.247754 1_1:-13439979 Msa0009220:three_prime_UTR
TCAGGAACTTCTACTCAAAA+TGG 0.249040 1_1:-13442494 Msa0009220:CDS
AAAATATGGAGGTCTTATTT+TGG 0.249385 1_1:-13440093 Msa0009220:three_prime_UTR
GCATTAACTGATTCAATGTT+TGG 0.270331 1_1:+13441616 None:intergenic
CGTAGCCATAACCTGCAAAT+TGG 0.286960 1_1:+13440528 None:intergenic
ACAGAATGCACATGGTATTA+TGG 0.289964 1_1:-13445050 Msa0009220:CDS
GATACTTGGCAAGAAGCTTT+TGG 0.303182 1_1:-13446207 Msa0009220:CDS
CCCAATGTTGGTGGCCAATC+TGG 0.309604 1_1:-13441354 Msa0009220:CDS
CAAACATGACATAAACTATT+AGG 0.311058 1_1:+13439998 None:intergenic
ACAGGAGGTTATTGTTGATT+TGG 0.312747 1_1:-13443397 Msa0009220:CDS
CTAATAGTTTATGTCATGTT+TGG 0.313421 1_1:-13439997 Msa0009220:three_prime_UTR
TCCTCTTCTGGTGCTGAAGC+AGG 0.313482 1_1:-13441642 Msa0009220:CDS
AAGCCAGAGGATAAGTTATT+CGG 0.322015 1_1:-13440371 Msa0009220:CDS
GGAAACCAATTTGCAGGTTA+TGG 0.323327 1_1:-13440533 Msa0009220:CDS
TGTTGATATTGAGGAGTAAA+TGG 0.327902 1_1:+13441330 None:intergenic
GATGCTCCTTTGGTTGATAC+TGG 0.332313 1_1:-13442419 Msa0009220:CDS
AGGGCATTCTGATCATTTAC+AGG 0.335396 1_1:+13441447 None:intergenic
TTCTGCAACCTGACCATTCC+AGG 0.335897 1_1:+13441197 None:intergenic
GTCCCACTTGGGATCAGCTT+TGG 0.346784 1_1:+13441554 None:intergenic
GAAAGGTTTGGGGTTAGAAT+TGG 0.347628 1_1:+13449991 None:intergenic
GTCGGCCGGTTGAGCTTCCC+AGG 0.348454 1_1:+13440865 None:intergenic
TACCGTTGGAAGAAAGGTTT+GGG 0.352595 1_1:+13449980 None:intergenic
TTGTTGGGTTGGCTGGGTAT+TGG 0.353690 1_1:+13441377 None:intergenic
AACTTACTTCTTTGTTGTTA+GGG 0.355207 1_1:+13444996 None:intergenic
GGTGAAAATAGTAAAGAAAA+AGG 0.355667 1_1:-13446365 Msa0009220:intron
GCGAAACTCCAGTTCCAATC+AGG 0.356777 1_1:-13440429 Msa0009220:CDS
AAGAAGATTCAAAACAGAAT+TGG 0.357864 1_1:+13449859 None:intergenic
TTCTCTTTGACATGAAAATC+AGG 0.358337 1_1:+13446246 None:intergenic
ATTAACATCAATAAAAGTTA+AGG 0.360375 1_1:+13440064 None:intergenic
GCAAGTGAAGTATCTGCTTT+TGG 0.360775 1_1:+13441504 None:intergenic
ATGAAGAAATATTACCATAA+GGG 0.367323 1_1:+13441157 None:intergenic
CAACAACCAGCTTCCCCTTA+TGG 0.367428 1_1:-13441171 Msa0009220:intron
TATATGTGCAGGTCCTCTTC+TGG 0.367659 1_1:-13441654 Msa0009220:intron
TGTAGATATTGATGCTCCTT+TGG 0.367957 1_1:-13442429 Msa0009220:CDS
GCCACCAACATTGGGTTGTT+GGG 0.373847 1_1:+13441362 None:intergenic
ACCACCCTGGGAAGCTCAAC+CGG 0.380702 1_1:-13440870 Msa0009220:CDS
AAGATTGTGGTAGTTTAGTT+TGG 0.385322 1_1:+13449954 None:intergenic
GCAGAGGCCTCAGCTGCGTC+TGG 0.387629 1_1:+13445813 None:intergenic
CAGCATATGCAAGGTGTTGC+AGG 0.388101 1_1:-13440629 Msa0009220:CDS
ATGTATGGAAACCAATTTGC+AGG 0.388230 1_1:-13440539 Msa0009220:CDS
AGCCAGAGGATAAGTTATTC+GGG 0.389324 1_1:-13440370 Msa0009220:CDS
CATTAACTGATTCAATGTTT+GGG 0.397291 1_1:+13441617 None:intergenic
CCAGGTTGGAAGCAATCAAT+TGG 0.397618 1_1:-13440663 Msa0009220:CDS
ATTGGGTTGTTGGGTTGGCT+GGG 0.400979 1_1:+13441371 None:intergenic
GGCCACCAACATTGGGTTGT+TGG 0.401898 1_1:+13441361 None:intergenic
TACATTTGCTGCTCAATGTA+TGG 0.403276 1_1:+13440482 None:intergenic
ACAGAGTTCCGCAAATCATC+AGG 0.405602 1_1:-13440768 Msa0009220:CDS
CTCCGATCGCATCGGTGGTT+CGG 0.407342 1_1:-13449908 Msa0009220:five_prime_UTR
CTACGGTCAACAACAACAAC+AGG 0.411293 1_1:-13440510 Msa0009220:CDS
TACTGCTTCTTGTAGATACT+TGG 0.411730 1_1:-13446221 Msa0009220:CDS
GCATTTGGCACATTTCCATT+GGG 0.415690 1_1:+13441270 None:intergenic
ATGCGATCGGAGAAAGATTC+CGG 0.416094 1_1:+13449919 None:intergenic
GGGCCTCAAGCAATGGGTTA+TGG 0.416438 1_1:-13440746 Msa0009220:CDS
TTTGCTTATTTCAGCGTGCC+GGG 0.417359 1_1:-13445941 Msa0009220:intron
GTGGTGGAAACATTAAAATA+TGG 0.427011 1_1:-13440107 Msa0009220:three_prime_UTR
GAAGTCAATGGTTGTGTTTG+TGG 0.430137 1_1:+13445870 None:intergenic
CTCGATGTTCATAGCCCAAT+CGG 0.430614 1_1:+13449772 None:intergenic
TCACTTGCTCTTGTTCCTCT+AGG 0.432550 1_1:-13441489 Msa0009220:CDS
TGCTGCTGTTGTTGATATTG+AGG 0.433910 1_1:+13441321 None:intergenic
CGCATCGGTGGTTCGGTCTA+CGG 0.435131 1_1:-13449901 Msa0009220:five_prime_UTR
GACATATGGCCGTTAGCATT+TGG 0.438245 1_1:+13440698 None:intergenic
TGGTGATACCGTTGGAAGAA+AGG 0.439944 1_1:+13449974 None:intergenic
GGATGAATCACTGCTATGCC+AGG 0.440080 1_1:-13442573 Msa0009220:CDS
CCAACATTGGGTTGTTGGGT+TGG 0.440486 1_1:+13441366 None:intergenic
CGTATAACCCTGATTGGAAC+TGG 0.441053 1_1:+13440421 None:intergenic
TCTGTTTCAGGGGCTTAGAC+AGG 0.441192 1_1:-13443415 Msa0009220:intron
AGCATTTGGCACATTTCCAT+TGG 0.445330 1_1:+13441269 None:intergenic
GCATCCGCGTCACGTATGTT+TGG 0.446206 1_1:+13445840 None:intergenic
TGCAGGTCATTACATGGGTA+TGG 0.449608 1_1:-13440612 Msa0009220:CDS
TATACGTCTTATGTTCCATC+GGG 0.450942 1_1:-13440404 Msa0009220:CDS
ATACCGTTGGAAGAAAGGTT+TGG 0.453442 1_1:+13449979 None:intergenic
TACATTGAGCAGCAAATGTA+TGG 0.459475 1_1:-13440479 Msa0009220:CDS
AACTTATCCTCTGGCTTGGA+AGG 0.462554 1_1:+13440377 None:intergenic
GGAGGTTATTGTTGATTTGG+TGG 0.464547 1_1:-13443394 Msa0009220:CDS
ATAAGACGTATAACCCTGAT+TGG 0.464637 1_1:+13440415 None:intergenic
AGCTCCTGCCTGGAATGGTC+AGG 0.464680 1_1:-13441205 Msa0009220:CDS
CTTACGTAGTTGAGTTTACA+AGG 0.465510 1_1:+13443337 None:intergenic
CCAGATTGGCCACCAACATT+GGG 0.465571 1_1:+13441354 None:intergenic
CGCAAAGTACAGCTCCTGCC+TGG 0.465640 1_1:-13441215 Msa0009220:CDS
TATGCTCATCGGTCCCGATT+GGG 0.469583 1_1:-13449786 Msa0009220:CDS
GACAATGGCAGTCCGGTAGC+AGG 0.472779 1_1:-13440845 Msa0009220:CDS
TTGGTTGATACTGGAGATAC+TGG 0.474645 1_1:-13442410 Msa0009220:CDS
TGAGCTTCCCAGGGTGGTGG+CGG 0.475902 1_1:+13440875 None:intergenic
CACTTGGGATCAGCTTTGGC+AGG 0.476176 1_1:+13441558 None:intergenic
ACCAGATTGGCCACCAACAT+TGG 0.476822 1_1:+13441353 None:intergenic
ATCATTGCCGCCACCACCCT+GGG 0.477109 1_1:-13440882 Msa0009220:CDS
ATCTGCAGCGTCTACTTGCC+AGG 0.479242 1_1:-13442532 Msa0009220:CDS
CCAATTGATTGCTTCCAACC+TGG 0.480702 1_1:+13440663 None:intergenic
ATGTATCCACAACAGATGTA+TGG 0.480885 1_1:-13440554 Msa0009220:CDS
ATCGGAGATGGTGAATTCTA+TGG 0.480968 1_1:-13449828 Msa0009220:exon
GGTTATTGACTGCTGACATA+TGG 0.481015 1_1:+13440684 None:intergenic
GTGATAGGTGCGCAAAATAG+TGG 0.482813 1_1:-13440905 Msa0009220:intron
TAAACATTACCAGCAGTTCC+TGG 0.483312 1_1:+13446145 None:intergenic
ACCACTGAGCAGGTCCCACT+TGG 0.485032 1_1:+13441542 None:intergenic
TACTGAGGTAAACCAGCATT+TGG 0.486602 1_1:+13441255 None:intergenic
GGCAGGTACAGCTGAACCAT+TGG 0.488214 1_1:+13441575 None:intergenic
GGTTGAGCTTCCCAGGGTGG+TGG 0.488216 1_1:+13440872 None:intergenic
ATTCACCTTTAGTACTCCTA+AGG 0.489287 1_1:-13439920 Msa0009220:three_prime_UTR
TTAACATACATCAAAACCTT+AGG 0.489530 1_1:+13439904 None:intergenic
ATGTTAATAAATGGGAAGAC+GGG 0.490675 1_1:-13440049 Msa0009220:three_prime_UTR
GATCATTGCCGCCACCACCC+TGG 0.491071 1_1:-13440883 Msa0009220:CDS
TTGAGGCCCCTGATGATTTG+CGG 0.494420 1_1:+13440760 None:intergenic
ATACATCTGTTGTGGATACA+TGG 0.495242 1_1:+13440556 None:intergenic
ATTTGCTTATTTCAGCGTGC+CGG 0.497309 1_1:-13445942 Msa0009220:intron
GATGTTAATAAATGGGAAGA+CGG 0.498238 1_1:-13440050 Msa0009220:three_prime_UTR
TCCCCGAATAACTTATCCTC+TGG 0.499326 1_1:+13440368 None:intergenic
TCAAAATGGAAATCAGATAG+AGG 0.499420 1_1:-13442480 Msa0009220:CDS
ACCGGACTGCCATTGTCGGC+CGG 0.500514 1_1:+13440851 None:intergenic
TGCTGCATACCAGGAACTGC+TGG 0.500884 1_1:-13446154 Msa0009220:intron
TGGTTTCCATACATCTGTTG+TGG 0.501498 1_1:+13440548 None:intergenic
AAAGGTATCAAGAAGCGGAT+TGG 0.503120 1_1:-13448004 Msa0009220:CDS
CAAAACCTTAGGAGTACTAA+AGG 0.504134 1_1:+13439915 None:intergenic
TGATCATTTACAGGAGTGGC+AGG 0.505960 1_1:+13441456 None:intergenic
GCAATGGGTTATGGCCAGGC+TGG 0.509475 1_1:-13440737 Msa0009220:CDS
AAAATGGAGAACTGGGAGTG+GGG 0.509490 1_1:-13440142 Msa0009220:three_prime_UTR
CGAAACTCCAGTTCCAATCA+GGG 0.509903 1_1:-13440428 Msa0009220:CDS
CCTCTTCTGGTGCTGAAGCA+GGG 0.511267 1_1:-13441641 Msa0009220:CDS
TCAAGCAATGGGTTATGGCC+AGG 0.512254 1_1:-13440741 Msa0009220:CDS
AGGTGTTGCAGGTCATTACA+TGG 0.512490 1_1:-13440618 Msa0009220:CDS
TCATCAGGGGCCTCAAGCAA+TGG 0.513105 1_1:-13440753 Msa0009220:CDS
ACCGGCCGACAATGGCAGTC+CGG 0.514784 1_1:-13440852 Msa0009220:CDS
CATCAGGGGCCTCAAGCAAT+GGG 0.515377 1_1:-13440752 Msa0009220:CDS
TGTGGATACTGAGGTGGTAG+TGG 0.515502 1_1:+13440812 None:intergenic
ACATACGTGACGCGGATGCT+CGG 0.517270 1_1:-13445836 Msa0009220:CDS
AAATGGAGAACTGGGAGTGG+GGG 0.517695 1_1:-13440141 Msa0009220:three_prime_UTR
TGACTGAATTGAGGTGGTTG+TGG 0.519401 1_1:+13440794 None:intergenic
CCTGCGCCAGCTACTTCCAA+TGG 0.520406 1_1:-13441591 Msa0009220:CDS
TGCTACCGGACTGCCATTGT+CGG 0.522850 1_1:+13440847 None:intergenic
GAATCTTCTTCGTCAGTGAT+CGG 0.522919 1_1:-13449846 Msa0009220:five_prime_UTR
ATATGCTCATCGGTCCCGAT+TGG 0.523143 1_1:-13449787 Msa0009220:CDS
TTACAAACATACCTTAGCGT+TGG 0.528507 1_1:+13445777 None:intergenic
TGCTCGGCCAGACGCAGCTG+AGG 0.528960 1_1:-13445820 Msa0009220:CDS
AAACATCACAAGTTAGCAAA+CGG 0.529310 1_1:+13440259 None:intergenic
GAATAACTTATCCTCTGGCT+TGG 0.531180 1_1:+13440373 None:intergenic
GTTTAGTTTGGTGATACCGT+TGG 0.533596 1_1:+13449966 None:intergenic
GTTTGTGGAGGAGTGAATAC+AGG 0.534401 1_1:+13445885 None:intergenic
GCTGAACCATTGGAAGTAGC+TGG 0.534652 1_1:+13441585 None:intergenic
CAATTTGCAGGTTATGGCTA+CGG 0.534873 1_1:-13440527 Msa0009220:CDS
ATATTACCATAAGGGGAAGC+TGG 0.535454 1_1:+13441165 None:intergenic
TGAAGAAATATTACCATAAG+GGG 0.538079 1_1:+13441158 None:intergenic
ACAATACTATGCTGCATACC+AGG 0.542835 1_1:-13446163 Msa0009220:CDS
CATAGTTATCACCACTGAGC+AGG 0.544400 1_1:+13441532 None:intergenic
CATCATTGAGAGCTAGTCCC+TGG 0.544403 1_1:+13442555 None:intergenic
GGCTTGGAAGGCTTCCCCGA+TGG 0.547370 1_1:+13440389 None:intergenic
ACCCAACAACCCAATGTTGG+TGG 0.548389 1_1:-13441363 Msa0009220:CDS
GAGAGACGTGCTTCATGAGA+TGG 0.548861 1_1:-13446386 Msa0009220:CDS
TCGATGTTCATAGCCCAATC+GGG 0.548956 1_1:+13449773 None:intergenic
AATGGAAATGTGCCAAATGC+TGG 0.552770 1_1:-13441267 Msa0009220:CDS
TGGTATTATGGATGTTCTTG+CGG 0.553127 1_1:-13445038 Msa0009220:CDS
ACCCCAAACCTTTCTTCCAA+CGG 0.553754 1_1:-13449982 Msa0009220:five_prime_UTR
TGCAGTGATTGCTCATACTG+AGG 0.553972 1_1:+13441240 None:intergenic
TCTTTCTCCGATCGCATCGG+TGG 0.555070 1_1:-13449913 Msa0009220:five_prime_UTR
TTATACGTCTTATGTTCCAT+CGG 0.555460 1_1:-13440405 Msa0009220:CDS
CAGGTTGGAAGCAATCAATT+GGG 0.555583 1_1:-13440662 Msa0009220:CDS
ACAAGTTGCCGAGCAGATGT+AGG 0.557054 1_1:+13442449 None:intergenic
TAAGTTATTCGGGGATCTTG+TGG 0.557924 1_1:-13440360 Msa0009220:CDS
TCTTCGTCAGTGATCGGAGA+TGG 0.560407 1_1:-13449840 Msa0009220:exon
TTTGGAGGGTATGAAGTCAA+TGG 0.561502 1_1:+13445858 None:intergenic
CCCTGCTTCAGCACCAGAAG+AGG 0.561683 1_1:+13441641 None:intergenic
TACATGCTACCAGCTCGACC+TGG 0.562479 1_1:+13440308 None:intergenic
GAAGCTCAACCGGCCGACAA+TGG 0.563209 1_1:-13440860 Msa0009220:CDS
AAAACAACTCCAGGTCGAGC+TGG 0.563885 1_1:-13440317 Msa0009220:CDS
GGATACTGACCACCTGCTAC+CGG 0.564121 1_1:+13440833 None:intergenic
GAGGAGTAAATGGACCAGAT+TGG 0.564498 1_1:+13441340 None:intergenic
TCCGCGTCACGTATGTTTGG+AGG 0.570227 1_1:+13445843 None:intergenic
GATTCAAAACAGAATTGGAT+CGG 0.572471 1_1:+13449864 None:intergenic
GTGAAGCCGAAAACAACTCC+AGG 0.572576 1_1:-13440326 Msa0009220:CDS
GTTTCAGGGGCTTAGACAGG+AGG 0.574938 1_1:-13443412 Msa0009220:intron
AGTACAGCTCCTGCCTGGAA+TGG 0.575026 1_1:-13441210 Msa0009220:CDS
AATCTGAATTTCCAACGCTA+AGG 0.577254 1_1:-13445788 Msa0009220:intron
TCGGCCGGTTGAGCTTCCCA+GGG 0.578441 1_1:+13440866 None:intergenic
CAATCTTCCAAATTCATCGC+CGG 0.578633 1_1:-13449938 Msa0009220:five_prime_UTR
ATTCGGGGATCTTGTGGACA+TGG 0.579335 1_1:-13440354 Msa0009220:CDS
CAGATTGTTCAGATCTCTGA+GGG 0.581230 1_1:+13445910 None:intergenic
TATTGTGGATATCTTGCCCT+CGG 0.582804 1_1:+13446180 None:intergenic
TGACAAAATAGATTCATGCC+TGG 0.586132 1_1:+13442514 None:intergenic
CAGCAGACATTCACATCTCA+AGG 0.586696 1_1:-13441303 Msa0009220:CDS
GTGGTTCGGTCTACGGTCGT+CGG 0.587935 1_1:-13449894 Msa0009220:five_prime_UTR
CCAACCCAACAACCCAATGT+TGG 0.588630 1_1:-13441366 Msa0009220:CDS
GATACTGGCAAACAAACTGA+TGG 0.591438 1_1:-13442395 Msa0009220:CDS
GAATCTTTCTCCGATCGCAT+CGG 0.591872 1_1:-13449916 Msa0009220:five_prime_UTR
GACCGAACCACCGATGCGAT+CGG 0.593640 1_1:+13449906 None:intergenic
TGTGGATACATGGAAGCCGC+AGG 0.595377 1_1:+13440566 None:intergenic
CAGAGTTCCGCAAATCATCA+GGG 0.596713 1_1:-13440767 Msa0009220:CDS
ATGGGTTATGGCCAGGCTGG+TGG 0.596992 1_1:-13440734 Msa0009220:CDS
TGGCCATAACCCATTGCTTG+AGG 0.597077 1_1:+13440743 None:intergenic
CTCTGTACATGACTGAATTG+AGG 0.598943 1_1:+13440785 None:intergenic
TCTCTGAGGGAATACTGCCC+CGG 0.599149 1_1:+13445923 None:intergenic
ACCGATGAGCATATCGCTCG+TGG 0.599653 1_1:+13449796 None:intergenic
GCAACCTGACCATTCCAGGC+AGG 0.600024 1_1:+13441201 None:intergenic
TCAGCAGTCAATAACCAGGT+TGG 0.603323 1_1:-13440677 Msa0009220:CDS
GACATGCTCAATCATGACCC+TGG 0.605073 1_1:-13449743 Msa0009220:CDS
CATTTGGCACATTTCCATTG+GGG 0.605378 1_1:+13441271 None:intergenic
TATGGTTATTAGGCAAGCGA+AGG 0.605406 1_1:-13448035 Msa0009220:intron
CCCTCCAAACATACGTGACG+CGG 0.605840 1_1:-13445844 Msa0009220:CDS
TGGTATGCAGCATAGTATTG+TGG 0.606322 1_1:+13446165 None:intergenic
ATTCTGATCATTTACAGGAG+TGG 0.607584 1_1:+13441452 None:intergenic
CCGCGTCACGTATGTTTGGA+GGG 0.608608 1_1:+13445844 None:intergenic
CAAGCGAAGGATGTTGTCAA+AGG 0.608929 1_1:-13448022 Msa0009220:CDS
CCATTGGAAGTAGCTGGCGC+AGG 0.610262 1_1:+13441591 None:intergenic
CAACACCTTGCATATGCTGA+GGG 0.616302 1_1:+13440633 None:intergenic
GTGGAAACATTAAAATATGG+AGG 0.617039 1_1:-13440104 Msa0009220:three_prime_UTR
ATTCAAAGCCTACATCTGCT+CGG 0.617124 1_1:-13442457 Msa0009220:CDS
TGAGGTGGTTGTGGATACTG+AGG 0.619141 1_1:+13440803 None:intergenic
GTCAATGGTTGTGTTTGTGG+AGG 0.621322 1_1:+13445873 None:intergenic
GCATATACATACCACCAGCC+TGG 0.624660 1_1:+13440723 None:intergenic
CTCCACTTACAGTTAGTGCA+AGG 0.625638 1_1:+13447957 None:intergenic
GCCGGTTGAGCTTCCCAGGG+TGG 0.626931 1_1:+13440869 None:intergenic
TTGTCAAAGGTATCAAGAAG+CGG 0.627413 1_1:-13448009 Msa0009220:CDS
TATATGCAGCCAAATGCTAA+CGG 0.627905 1_1:-13440707 Msa0009220:CDS
GCGATGAATTTGGAAGATTG+TGG 0.629083 1_1:+13449941 None:intergenic
ATGCACCCTCAGCATATGCA+AGG 0.632651 1_1:-13440638 Msa0009220:CDS
ATACTGGCAAACAAACTGAT+GGG 0.633087 1_1:-13442394 Msa0009220:CDS
TTGCTTATTTCAGCGTGCCG+GGG 0.634786 1_1:-13445940 Msa0009220:intron
TTGATGTAAATTGATTCTAG+AGG 0.635306 1_1:-13440174 Msa0009220:three_prime_UTR
TGGAAATTCAGATTCTGCAG+AGG 0.640110 1_1:+13445797 None:intergenic
TCATTTACAGGAGTGGCAGG+TGG 0.640914 1_1:+13441459 None:intergenic
GGTGGTTGTGGATACTGAGG+TGG 0.641647 1_1:+13440806 None:intergenic
GATGAATCACTGCTATGCCA+GGG 0.646115 1_1:-13442572 Msa0009220:CDS
GCCACGAGCGATATGCTCAT+CGG 0.646284 1_1:-13449797 Msa0009220:CDS
TGTTAATAAATGGGAAGACG+GGG 0.648427 1_1:-13440048 Msa0009220:three_prime_UTR
GAAACAATCATAAAGAACTG+TGG 0.650766 1_1:-13446436 Msa0009220:CDS
CTGCCAAAGCTGATCCCAAG+TGG 0.653739 1_1:-13441557 Msa0009220:CDS
CCACTGAGCAGGTCCCACTT+GGG 0.655885 1_1:+13441543 None:intergenic
AATGGCAGTCCGGTAGCAGG+TGG 0.657738 1_1:-13440842 Msa0009220:CDS
GCAACACCTTGCATATGCTG+AGG 0.658508 1_1:+13440632 None:intergenic
TATGTCAGCAGTCAATAACC+AGG 0.660036 1_1:-13440681 Msa0009220:CDS
GTATCTCCAGTATCAACCAA+AGG 0.662112 1_1:+13442413 None:intergenic
TCAAGCACAAGGTGGTCCTG+CGG 0.662796 1_1:-13440582 Msa0009220:CDS
TGCCAAAGCTGATCCCAAGT+GGG 0.663726 1_1:-13441556 Msa0009220:CDS
ACATGCTCAATCATGACCCT+GGG 0.664796 1_1:-13449742 Msa0009220:intron
GCAGGTGGTTGTTCTCCTAG+AGG 0.668111 1_1:+13441474 None:intergenic
GGGGAAGCCTTCCAAGCCAG+AGG 0.670946 1_1:-13440384 Msa0009220:CDS
TAGAACATACAAGCAAAGAG+TGG 0.671247 1_1:-13443364 Msa0009220:CDS
GGTGTTGCAGGTCATTACAT+GGG 0.674541 1_1:-13440617 Msa0009220:CDS
GCCAGAGGATAAGTTATTCG+GGG 0.692773 1_1:-13440369 Msa0009220:CDS
GCAGATTGTTCAGATCTCTG+AGG 0.694743 1_1:+13445909 None:intergenic
CTGGCAAACAAACTGATGGG+AGG 0.698540 1_1:-13442391 Msa0009220:intron
ATGGCTTCACATCAAGCACA+AGG 0.698886 1_1:-13440593 Msa0009220:CDS
AGAGTTCCGCAAATCATCAG+GGG 0.699530 1_1:-13440766 Msa0009220:CDS
TACGGTCAACAACAACAACA+GGG 0.702741 1_1:-13440509 Msa0009220:CDS
CCCAAGTGGGACCTGCTCAG+TGG 0.703675 1_1:-13441543 Msa0009220:CDS
GTTAATAAATGGGAAGACGG+GGG 0.705940 1_1:-13440047 Msa0009220:three_prime_UTR
ACTGAAATACAGAATGCACA+TGG 0.716588 1_1:-13445058 Msa0009220:CDS
CAGACATTCACATCTCAAGG+TGG 0.719363 1_1:-13441300 Msa0009220:CDS
GGCTGGGTATTGGCAGACGT+AGG 0.721491 1_1:+13441387 None:intergenic
TGTACATGACTGAATTGAGG+TGG 0.724888 1_1:+13440788 None:intergenic
GCTTCACATCAAGCACAAGG+TGG 0.738277 1_1:-13440590 Msa0009220:CDS
ACCGTTGGAAGAAAGGTTTG+GGG 0.742714 1_1:+13449981 None:intergenic
ATACGTCTTATGTTCCATCG+GGG 0.761345 1_1:-13440403 Msa0009220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAATTAAAAAAATT+CGG - chr1_1:13440793-13440812 Msa0009220:CDS 0.0%
!!! TTATTTATTTATTTATTTTT+TGG - chr1_1:13447797-13447816 Msa0009220:intron 0.0%
!! AAATTAGAAAATAGTAATTA+AGG - chr1_1:13440673-13440692 Msa0009220:CDS 10.0%
!! AATACTAATTATTATAACTA+AGG + chr1_1:13441824-13441843 None:intergenic 10.0%
!!! TTTTTGTCTATTTTTTATTA+TGG - chr1_1:13443572-13443591 Msa0009220:intron 10.0%
!!! TGTTATAATTATATTTTCTA+TGG - chr1_1:13445611-13445630 Msa0009220:intron 10.0%
!! TTTATAATTATACTGAAAAT+GGG + chr1_1:13446437-13446456 None:intergenic 10.0%
!!! TTTATTTATTTATTTTTTGG+TGG - chr1_1:13447800-13447819 Msa0009220:intron 10.0%
!!! TTTTATTGATGTTAATAAAT+GGG - chr1_1:13449485-13449504 Msa0009220:intron 10.0%
!!! TGTAAACTTTTTTTTTTTTT+TGG - chr1_1:13449988-13450007 Msa0009220:five_prime_UTR 10.0%
!!! TTTTTACTTTTTGCATTATT+TGG - chr1_1:13439878-13439897 Msa0009220:intron 15.0%
!!! ATAAACTATTTCTATAACAA+AGG + chr1_1:13441022-13441041 None:intergenic 15.0%
!! TAAGAAAAATAAGAAAAACT+CGG + chr1_1:13441253-13441272 None:intergenic 15.0%
!! GGAAAATTTATAAAATTTGT+AGG - chr1_1:13442179-13442198 Msa0009220:intron 15.0%
!! TTATTTAGAAATGCTAAAAT+GGG - chr1_1:13442320-13442339 Msa0009220:intron 15.0%
!!! TAAGATTTTATGTTCAAATA+TGG - chr1_1:13442929-13442948 Msa0009220:intron 15.0%
!!! ATAGACATTTAAATTTTATC+TGG + chr1_1:13443028-13443047 None:intergenic 15.0%
!!! ACAAAAACTAAATTTTATGA+AGG + chr1_1:13443559-13443578 None:intergenic 15.0%
!! TAGAAAACAATGAAATAAAT+TGG - chr1_1:13444935-13444954 Msa0009220:intron 15.0%
!! GAAAAAATAATAGAAATAAC+AGG + chr1_1:13445299-13445318 None:intergenic 15.0%
!! ATTCAAAATAAATTATCACA+TGG + chr1_1:13445698-13445717 None:intergenic 15.0%
!! TTGTTTAGATTTCTTAAAAT+AGG + chr1_1:13445931-13445950 None:intergenic 15.0%
!! AATTTCATAATATCATAGAA+GGG + chr1_1:13446241-13446260 None:intergenic 15.0%
!! GTTTATAATTATACTGAAAA+TGG + chr1_1:13446438-13446457 None:intergenic 15.0%
!! CAGTATAATTATAAACATTA+TGG - chr1_1:13446442-13446461 Msa0009220:CDS 15.0%
!!! TAAATTTTTACTTTGTATGT+GGG + chr1_1:13446651-13446670 None:intergenic 15.0%
!!! TTAAATTTTTACTTTGTATG+TGG + chr1_1:13446652-13446671 None:intergenic 15.0%
!! GAAATATAATTATAATCGAT+AGG + chr1_1:13446781-13446800 None:intergenic 15.0%
!! ACTAATAAAACTAAACTATT+CGG + chr1_1:13447404-13447423 None:intergenic 15.0%
!!! TGATTTATCTATTTTCATAA+TGG - chr1_1:13448409-13448428 Msa0009220:intron 15.0%
!!! GATTTATCTATTTTCATAAT+GGG - chr1_1:13448410-13448429 Msa0009220:intron 15.0%
!! ATTAACATCAATAAAAGTTA+AGG + chr1_1:13449481-13449500 None:intergenic 15.0%
!!! CTTTTATTGATGTTAATAAA+TGG - chr1_1:13449484-13449503 Msa0009220:intron 15.0%
!!! ATAATTGATTCCTATAATTT+TGG + chr1_1:13449576-13449595 None:intergenic 15.0%
!! TAAATAATGTCGTTAAATAG+CGG + chr1_1:13440180-13440199 None:intergenic 20.0%
!! AAAAATGCTTAGAAGTTAAA+TGG - chr1_1:13440601-13440620 Msa0009220:CDS 20.0%
!! AAAATGCTTAGAAGTTAAAT+GGG - chr1_1:13440602-13440621 Msa0009220:CDS 20.0%
!!! ATTAAGTTGTTTATCAAAAC+AGG - chr1_1:13441070-13441089 Msa0009220:intron 20.0%
!!! TTAAGTTGTTTATCAAAACA+GGG - chr1_1:13441071-13441090 Msa0009220:intron 20.0%
!! AAGAAAAATAAGAAAAACTC+GGG + chr1_1:13441252-13441271 None:intergenic 20.0%
!!! TTTTCTTACATTTCTAACTT+TGG - chr1_1:13441265-13441284 Msa0009220:CDS 20.0%
!! TTTCTTACATTTCTAACTTT+GGG - chr1_1:13441266-13441285 Msa0009220:CDS 20.0%
!! TACGTCAAATATTCAAATTT+CGG + chr1_1:13441430-13441449 None:intergenic 20.0%
!!! TAGTCAACTTTTTAAAGTTT+AGG + chr1_1:13441783-13441802 None:intergenic 20.0%
!!! ATGATTTTTTACTGATGAAA+AGG + chr1_1:13441882-13441901 None:intergenic 20.0%
!! TTTCATCAGTAAAAAATCAT+AGG - chr1_1:13441882-13441901 Msa0009220:intron 20.0%
!!! TAAATCCACTTTTTTCATAA+TGG + chr1_1:13442210-13442229 None:intergenic 20.0%
!! CTTATTTAGAAATGCTAAAA+TGG - chr1_1:13442319-13442338 Msa0009220:intron 20.0%
!! TATTTAGAAATGCTAAAATG+GGG - chr1_1:13442321-13442340 Msa0009220:intron 20.0%
!! GGTTTCTTTAATATTAGAAT+GGG + chr1_1:13442494-13442513 None:intergenic 20.0%
!! AGGTTTCTTTAATATTAGAA+TGG + chr1_1:13442495-13442514 None:intergenic 20.0%
!! AGATATATGATATGATGTTA+TGG + chr1_1:13442649-13442668 None:intergenic 20.0%
!!! TTTTACCCATAAGTTTTTTT+TGG - chr1_1:13442709-13442728 Msa0009220:intron 20.0%
!!! ATCAATTTAACACTTTTGTA+TGG - chr1_1:13443492-13443511 Msa0009220:intron 20.0%
!!! TCAATTTAACACTTTTGTAT+GGG - chr1_1:13443493-13443512 Msa0009220:intron 20.0%
!!! GTCTATTTTTTATTATGGAA+AGG - chr1_1:13443577-13443596 Msa0009220:intron 20.0%
!!! ATATGCAAAATTTAGCTTAA+AGG - chr1_1:13444129-13444148 Msa0009220:intron 20.0%
!! AACAAGCAGAATAAAAAAAA+TGG + chr1_1:13444180-13444199 None:intergenic 20.0%
!! TATCATATAAAGTGAAAAAC+AGG + chr1_1:13444218-13444237 None:intergenic 20.0%
!! TGAATGAAGTTTAAATTACA+CGG + chr1_1:13444335-13444354 None:intergenic 20.0%
!!! TGAATCAAAATACTTTTTGT+TGG - chr1_1:13444604-13444623 Msa0009220:intron 20.0%
!! AAACACATTAACCAAATAAA+GGG + chr1_1:13444674-13444693 None:intergenic 20.0%
!! AAAACACATTAACCAAATAA+AGG + chr1_1:13444675-13444694 None:intergenic 20.0%
!! TATTGTATATGCAGTTTATT+TGG - chr1_1:13445535-13445554 Msa0009220:intron 20.0%
!!! ATAATTTATTTTGAATCCTG+AGG - chr1_1:13445702-13445721 Msa0009220:intron 20.0%
!!! CTTAATTAATAGTATTGAAG+TGG - chr1_1:13445741-13445760 Msa0009220:intron 20.0%
!! TTAGATTTCTTAAAATAGGA+TGG + chr1_1:13445927-13445946 None:intergenic 20.0%
!! ATTTCATAATATCATAGAAG+GGG + chr1_1:13446240-13446259 None:intergenic 20.0%
!! CAATTTCATAATATCATAGA+AGG + chr1_1:13446242-13446261 None:intergenic 20.0%
!!! TATATTTCTACATTAGAATG+TGG - chr1_1:13446793-13446812 Msa0009220:intron 20.0%
!! CATCAATAATTATAATCGAT+AGG + chr1_1:13446828-13446847 None:intergenic 20.0%
!!! TATGTTCATGTTATTTTTAC+TGG - chr1_1:13447294-13447313 Msa0009220:intron 20.0%
!! ATGAAGAAATATTACCATAA+GGG + chr1_1:13448388-13448407 None:intergenic 20.0%
!! AATGAAGAAATATTACCATA+AGG + chr1_1:13448389-13448408 None:intergenic 20.0%
!! CACTACAAATTAAATTAGTT+TGG + chr1_1:13449741-13449760 None:intergenic 20.0%
!! ACCTTAATAAGATCTAAATT+TGG - chr1_1:13449965-13449984 Msa0009220:five_prime_UTR 20.0%
!! ACCAAATTTAGATCTTATTA+AGG + chr1_1:13449969-13449988 None:intergenic 20.0%
!!! TTTTTTTTTGGTAGTAAAAG+AGG - chr1_1:13450000-13450019 Msa0009220:five_prime_UTR 20.0%
!!! TTTTTTTTGGTAGTAAAAGA+GGG - chr1_1:13450001-13450020 Msa0009220:five_prime_UTR 20.0%
! AAGAAGATTCAAAACAGAAT+TGG + chr1_1:13439686-13439705 None:intergenic 25.0%
! AGAACAATAAAATTTGAGCT+AGG - chr1_1:13439909-13439928 Msa0009220:three_prime_UTR 25.0%
! TAATCAATTGTGAGATTGTT+TGG - chr1_1:13440042-13440061 Msa0009220:three_prime_UTR 25.0%
! ATATACGTATCTTAAACGTA+TGG + chr1_1:13440308-13440327 None:intergenic 25.0%
!!! TTCTAAGCATTTTTCAAGAT+TGG + chr1_1:13440595-13440614 None:intergenic 25.0%
! AGAAAATAGTAATTAAGGAG+AGG - chr1_1:13440678-13440697 Msa0009220:CDS 25.0%
! TAATCAGTTAGACATATCTT+AGG - chr1_1:13440706-13440725 Msa0009220:CDS 25.0%
!!! GCTATTTTCATAAACTAACT+TGG + chr1_1:13440967-13440986 None:intergenic 25.0%
! AGGCTTATAATTTATACTCA+TGG + chr1_1:13441216-13441235 None:intergenic 25.0%
!! ACATATGCATTTTTAACGTT+TGG - chr1_1:13441293-13441312 Msa0009220:CDS 25.0%
!!! GTTTCTATGTTTTGGTAAAT+GGG - chr1_1:13441329-13441348 Msa0009220:CDS 25.0%
! ACTTCCATATATTGAGAATT+CGG - chr1_1:13441478-13441497 Msa0009220:CDS 25.0%
! TCTTGACAAATATTAACATG+AGG + chr1_1:13441653-13441672 None:intergenic 25.0%
!!! TCAACTTTTTAAAGTTTAGG+AGG + chr1_1:13441780-13441799 None:intergenic 25.0%
!!! GTACTTTTATTTTTGCATCA+AGG - chr1_1:13441907-13441926 Msa0009220:intron 25.0%
! ACAAAATTTACTGCAACTTT+AGG + chr1_1:13441992-13442011 None:intergenic 25.0%
! AGTCAATTAGTTAGAAATGA+AGG - chr1_1:13442158-13442177 Msa0009220:intron 25.0%
! CTAAACCATTATGAAAAAAG+TGG - chr1_1:13442202-13442221 Msa0009220:intron 25.0%
!!! AGAAGGGTTTTATGAAAATA+TGG - chr1_1:13442423-13442442 Msa0009220:CDS 25.0%
! AAAACAATAACTAGAGTTAG+AGG + chr1_1:13442693-13442712 None:intergenic 25.0%
! ACAATCTGACATGTAATTTA+AGG + chr1_1:13442870-13442889 None:intergenic 25.0%
! GAACATAAAATCTTAATGAC+AGG + chr1_1:13442924-13442943 None:intergenic 25.0%
! AAATGATGTTTATTCAGCTT+GGG - chr1_1:13442987-13443006 Msa0009220:intron 25.0%
!!! AAACTTATTTGTTTTCCTGT+TGG - chr1_1:13443065-13443084 Msa0009220:intron 25.0%
! GGTGAAAATAGTAAAGAAAA+AGG - chr1_1:13443177-13443196 Msa0009220:intron 25.0%
!! CCTTTTAGATAACAAAGTAA+AGG + chr1_1:13443793-13443812 None:intergenic 25.0%
!! CCTTTACTTTGTTATCTAAA+AGG - chr1_1:13443790-13443809 Msa0009220:intron 25.0%
!! TTACTTTGTTATCTAAAAGG+TGG - chr1_1:13443793-13443812 Msa0009220:intron 25.0%
!!! GTATACTTCTAGTTTCATAT+AGG - chr1_1:13443911-13443930 Msa0009220:intron 25.0%
! ACAACCATTAAAAAAATGCA+TGG + chr1_1:13444043-13444062 None:intergenic 25.0%
!!! CTTTCAGTAGGTATTTTTAT+TGG - chr1_1:13444384-13444403 Msa0009220:intron 25.0%
!!! AACTTACTTCTTTGTTGTTA+GGG + chr1_1:13444549-13444568 None:intergenic 25.0%
! TTCAACTTATTCCCTTTATT+TGG - chr1_1:13444660-13444679 Msa0009220:intron 25.0%
! AAATTGACGATAACCATTAA+GGG + chr1_1:13444748-13444767 None:intergenic 25.0%
! TAAATTGACGATAACCATTA+AGG + chr1_1:13444749-13444768 None:intergenic 25.0%
! GAAATTAACTGAAGAATTCA+CGG - chr1_1:13444966-13444985 Msa0009220:intron 25.0%
! TTTGATTACATGCTAAAATG+TGG - chr1_1:13445003-13445022 Msa0009220:CDS 25.0%
! TTGATTACATGCTAAAATGT+GGG - chr1_1:13445004-13445023 Msa0009220:CDS 25.0%
! TGTCTGGATTAATAGAAAAT+GGG + chr1_1:13445262-13445281 None:intergenic 25.0%
! TGACAGACCAAAATATAATT+GGG + chr1_1:13445408-13445427 None:intergenic 25.0%
! TTGACAGACCAAAATATAAT+TGG + chr1_1:13445409-13445428 None:intergenic 25.0%
! AATTAACAGTATTCTCTGTT+GGG - chr1_1:13445432-13445451 Msa0009220:intron 25.0%
! TGAAGTTGCAAATTTAAATC+AGG - chr1_1:13445652-13445671 Msa0009220:intron 25.0%
! AAATTTAAATCAGGTGTTCA+TGG - chr1_1:13445661-13445680 Msa0009220:intron 25.0%
! AATAGGATGGAATAGTTTAT+AGG + chr1_1:13445914-13445933 None:intergenic 25.0%
! GGATATACGTAATGTAAAAT+AGG + chr1_1:13446100-13446119 None:intergenic 25.0%
!!! GCTGATATTTTTGTTGAAAT+TGG - chr1_1:13446291-13446310 Msa0009220:intron 25.0%
!!! TTTGTTTTATGTGTATCCAA+GGG - chr1_1:13446365-13446384 Msa0009220:intron 25.0%
! TTCTTTCTACATTAGAATGT+GGG - chr1_1:13446747-13446766 Msa0009220:intron 25.0%
! CATATACAGAATATCAAATG+TGG + chr1_1:13446852-13446871 None:intergenic 25.0%
! CAATAATGTAAAGAAAAGAC+AGG + chr1_1:13447185-13447204 None:intergenic 25.0%
! AGTAGTTTATCAATCAGATA+TGG - chr1_1:13447338-13447357 Msa0009220:intron 25.0%
! AATAAAACTAAACTATTCGG+AGG + chr1_1:13447401-13447420 None:intergenic 25.0%
! TGTTTATACACAACGTATTT+CGG + chr1_1:13447566-13447585 None:intergenic 25.0%
! TGAAGTTTATCTATCTGATA+TGG - chr1_1:13447586-13447605 Msa0009220:intron 25.0%
! AATAAAACTGAACTATTCGA+AGG + chr1_1:13447661-13447680 None:intergenic 25.0%
!! GGAAATATTTTCAACTTAAC+CGG - chr1_1:13447821-13447840 Msa0009220:intron 25.0%
!! CATTAACTGATTCAATGTTT+GGG + chr1_1:13447928-13447947 None:intergenic 25.0%
! AAGCATATCAAAAAGAACAA+GGG + chr1_1:13448117-13448136 None:intergenic 25.0%
! AAAGCATATCAAAAAGAACA+AGG + chr1_1:13448118-13448137 None:intergenic 25.0%
! TGAAGAAATATTACCATAAG+GGG + chr1_1:13448387-13448406 None:intergenic 25.0%
! GAATGAGAATGTAATTGTAA+AGG + chr1_1:13448442-13448461 None:intergenic 25.0%
!!! TTCTAAAAACGTGTTTTAGT+TGG - chr1_1:13448459-13448478 Msa0009220:intron 25.0%
! ATTAGTGAAGGGTTAAAAAA+TGG + chr1_1:13448507-13448526 None:intergenic 25.0%
! TATCACTTTCAATTAGTGAA+GGG + chr1_1:13448518-13448537 None:intergenic 25.0%
! ATATCACTTTCAATTAGTGA+AGG + chr1_1:13448519-13448538 None:intergenic 25.0%
! ACTAATTGAAAGTGATATGT+TGG - chr1_1:13448521-13448540 Msa0009220:intron 25.0%
! CTAATTGAAAGTGATATGTT+GGG - chr1_1:13448522-13448541 Msa0009220:intron 25.0%
! TGAATTGAGAATTTAACTCT+AGG - chr1_1:13448562-13448581 Msa0009220:intron 25.0%
!!! CTTTTATTTTTTGGTGTGAT+AGG - chr1_1:13448622-13448641 Msa0009220:intron 25.0%
!!! ATTTTTTGTTTTTGCTTGTC+TGG - chr1_1:13449336-13449355 Msa0009220:intron 25.0%
!!! TTTTTTGTTTTTGCTTGTCT+GGG - chr1_1:13449337-13449356 Msa0009220:intron 25.0%
!! TTGATGTAAATTGATTCTAG+AGG - chr1_1:13449368-13449387 Msa0009220:intron 25.0%
!!! AAAATATGGAGGTCTTATTT+TGG - chr1_1:13449449-13449468 Msa0009220:intron 25.0%
! CAAACATGACATAAACTATT+AGG + chr1_1:13449547-13449566 None:intergenic 25.0%
! CTAATAGTTTATGTCATGTT+TGG - chr1_1:13449545-13449564 Msa0009220:intron 25.0%
! TTTGGATGTACCAAAATTAT+AGG - chr1_1:13449563-13449582 Msa0009220:intron 25.0%
! TTAACATACATCAAAACCTT+AGG + chr1_1:13449641-13449660 None:intergenic 25.0%
! TTAGATCTTATTAAGGTCTT+TGG + chr1_1:13449962-13449981 None:intergenic 25.0%
AAGATTGTGGTAGTTTAGTT+TGG + chr1_1:13439591-13439610 None:intergenic 30.0%
GATTCAAAACAGAATTGGAT+CGG + chr1_1:13439681-13439700 None:intergenic 30.0%
TGTTTGTATCCTCTATATAG+TGG - chr1_1:13440483-13440502 Msa0009220:CDS 30.0%
GTTTGTTCAGACTTCAAAAT+TGG - chr1_1:13440505-13440524 Msa0009220:CDS 30.0%
ATTTCACATAGAAGATTACG+CGG + chr1_1:13441192-13441211 None:intergenic 30.0%
! AACGTTTGGATTTTATTGAG+TGG - chr1_1:13441307-13441326 Msa0009220:CDS 30.0%
! ATTGAGTGGTTTCTATGTTT+TGG - chr1_1:13441321-13441340 Msa0009220:CDS 30.0%
!!! GGTTTCTATGTTTTGGTAAA+TGG - chr1_1:13441328-13441347 Msa0009220:CDS 30.0%
CATATATTGAGAATTCGGTT+GGG - chr1_1:13441483-13441502 Msa0009220:CDS 30.0%
! ATTTGTCAAGAAGAAGCTTT+TGG - chr1_1:13441662-13441681 Msa0009220:intron 30.0%
TCTTGGACAATATTAACATC+AGG + chr1_1:13441704-13441723 None:intergenic 30.0%
!! TAAATCCAAAAGCATCTTCT+TGG + chr1_1:13441721-13441740 None:intergenic 30.0%
TAACTAAGGAACAAAACGTT+TGG + chr1_1:13441810-13441829 None:intergenic 30.0%
!! ACTTGTTGTAGTTTGTGTTA+AGG - chr1_1:13441844-13441863 Msa0009220:intron 30.0%
ACACAAATCTAAACCATCAA+AGG + chr1_1:13442087-13442106 None:intergenic 30.0%
! TATGATCAACTCAGTTTTCT+GGG + chr1_1:13442130-13442149 None:intergenic 30.0%
! ATATGATCAACTCAGTTTTC+TGG + chr1_1:13442131-13442150 None:intergenic 30.0%
AAGCTTTCCATTACAAAGAA+GGG - chr1_1:13442407-13442426 Msa0009220:CDS 30.0%
CATAAAACCCTTCTTTGTAA+TGG + chr1_1:13442417-13442436 None:intergenic 30.0%
TGAAAATATGGAAGCTTGAA+CGG - chr1_1:13442435-13442454 Msa0009220:CDS 30.0%
TAGAATGGGATGTTTAATGA+AGG + chr1_1:13442480-13442499 None:intergenic 30.0%
GCATGGTAAAGAATTCAATT+GGG + chr1_1:13442518-13442537 None:intergenic 30.0%
AGCATGGTAAAGAATTCAAT+TGG + chr1_1:13442519-13442538 None:intergenic 30.0%
TATGATATGATGTTATGGTG+TGG + chr1_1:13442644-13442663 None:intergenic 30.0%
GAAGGCCAAAAAAAACTTAT+GGG + chr1_1:13442717-13442736 None:intergenic 30.0%
! TAAGGCTATATTTGAGATGA+TGG + chr1_1:13442852-13442871 None:intergenic 30.0%
AATATGGAAAACTAAACCAC+CGG - chr1_1:13442945-13442964 Msa0009220:intron 30.0%
TGAATAAACATCATTTGGAC+AGG + chr1_1:13442983-13443002 None:intergenic 30.0%
CAAGCTGAATAAACATCATT+TGG + chr1_1:13442988-13443007 None:intergenic 30.0%
CAAATGATGTTTATTCAGCT+TGG - chr1_1:13442986-13443005 Msa0009220:intron 30.0%
GAAACAATCATAAAGAACTG+TGG - chr1_1:13443106-13443125 Msa0009220:intron 30.0%
TTCTCTTTGACATGAAAATC+AGG + chr1_1:13443299-13443318 None:intergenic 30.0%
ATATTTGGCAACTACGTAAA+AGG + chr1_1:13443430-13443449 None:intergenic 30.0%
ACATGGAGACTATAAAATCT+AGG + chr1_1:13443823-13443842 None:intergenic 30.0%
!!! ATTTTTTATGCCTGACATCA+TGG - chr1_1:13443884-13443903 Msa0009220:intron 30.0%
CTACAAAGAAAATATGTCAC+TGG + chr1_1:13443971-13443990 None:intergenic 30.0%
!!! TGTGTGCTCTTTTTTATGAT+TGG - chr1_1:13444012-13444031 Msa0009220:intron 30.0%
CATTAAAAAAATGCATGGCT+AGG + chr1_1:13444038-13444057 None:intergenic 30.0%
!!! CTAGCCATGCATTTTTTTAA+TGG - chr1_1:13444036-13444055 Msa0009220:intron 30.0%
CTCAAGAATAAACTAAAGTC+TGG - chr1_1:13444073-13444092 Msa0009220:intron 30.0%
AAGAATAAACTAAAGTCTGG+TGG - chr1_1:13444076-13444095 Msa0009220:intron 30.0%
! TGCAAAATTTAGCTTAAAGG+AGG - chr1_1:13444132-13444151 Msa0009220:intron 30.0%
TAGCATATTGTACTTTCAGT+AGG - chr1_1:13444372-13444391 Msa0009220:intron 30.0%
TTCTGTATTTCAGTCAAACT+GGG + chr1_1:13444478-13444497 None:intergenic 30.0%
ATTCTGTATTTCAGTCAAAC+TGG + chr1_1:13444479-13444498 None:intergenic 30.0%
!! CAACTTACTTCTTTGTTGTT+AGG + chr1_1:13444550-13444569 None:intergenic 30.0%
!! TGATGACTATGATTTGTTCT+AGG + chr1_1:13444703-13444722 None:intergenic 30.0%
TGTGGTTGTAACATATTTGT+GGG - chr1_1:13444858-13444877 Msa0009220:intron 30.0%
TAGTTATCAGTTAGCACTAA+AGG + chr1_1:13444903-13444922 None:intergenic 30.0%
TGATTACATGCTAAAATGTG+GGG - chr1_1:13445005-13445024 Msa0009220:CDS 30.0%
CTGTCTGGATTAATAGAAAA+TGG + chr1_1:13445263-13445282 None:intergenic 30.0%
! GGTAGATTTTATATACTGTC+TGG + chr1_1:13445278-13445297 None:intergenic 30.0%
!!! ATTTTGTTTTCACATCCAAG+CGG - chr1_1:13445337-13445356 Msa0009220:intron 30.0%
! CAACTTGCCCAATTATATTT+TGG - chr1_1:13445398-13445417 Msa0009220:intron 30.0%
GAATTAACAGTATTCTCTGT+TGG - chr1_1:13445431-13445450 Msa0009220:intron 30.0%
ATTAACAGTATTCTCTGTTG+GGG - chr1_1:13445433-13445452 Msa0009220:intron 30.0%
!!! CCTGTAATGTTTTTGAGTTA+AGG + chr1_1:13445578-13445597 None:intergenic 30.0%
CCTTAACTCAAAAACATTAC+AGG - chr1_1:13445575-13445594 Msa0009220:intron 30.0%
AGAAATTTCCTTCCGTTATT+TGG - chr1_1:13445789-13445808 Msa0009220:CDS 30.0%
GAAATTTCCTTCCGTTATTT+GGG - chr1_1:13445790-13445809 Msa0009220:CDS 30.0%
ATCACAAATAGCCCAAATAA+CGG + chr1_1:13445804-13445823 None:intergenic 30.0%
TATATCCACTTCTCAAACAA+TGG + chr1_1:13445847-13445866 None:intergenic 30.0%
! AGTTTATAGGATAGTGGTAT+AGG + chr1_1:13445901-13445920 None:intergenic 30.0%
TGGAATAGTTTATAGGATAG+TGG + chr1_1:13445907-13445926 None:intergenic 30.0%
GCGATCAGAACTAAAATTTA+TGG + chr1_1:13446273-13446292 None:intergenic 30.0%
ACACATAAAACAAAGGTCAT+AGG + chr1_1:13446359-13446378 None:intergenic 30.0%
CTTGGATACACATAAAACAA+AGG + chr1_1:13446366-13446385 None:intergenic 30.0%
!!! CTTTGTTTTATGTGTATCCA+AGG - chr1_1:13446364-13446383 Msa0009220:intron 30.0%
CAGAAAATGCTACAAGTAAA+TGG + chr1_1:13446412-13446431 None:intergenic 30.0%
TAATTGTGATAGAGAGTAGA+TGG + chr1_1:13446567-13446586 None:intergenic 30.0%
CTTCTTTCTACATTAGAATG+TGG - chr1_1:13446746-13446765 Msa0009220:intron 30.0%
! TGTTTTCTCTGTATTTTTCC+AGG - chr1_1:13446947-13446966 Msa0009220:intron 30.0%
! GTTTTCTCTGTATTTTTCCA+GGG - chr1_1:13446948-13446967 Msa0009220:intron 30.0%
TCAAAATGGAAATCAGATAG+AGG - chr1_1:13447062-13447081 Msa0009220:intron 30.0%
TGGAATTATATCTTTGACGT+TGG - chr1_1:13447314-13447333 Msa0009220:intron 30.0%
GGAATTATATCTTTGACGTT+GGG - chr1_1:13447315-13447334 Msa0009220:intron 30.0%
CATCAACTAAAACTCGATTT+CGG + chr1_1:13447373-13447392 None:intergenic 30.0%
TCATTATGTGTGTAAGATAG+AGG - chr1_1:13447423-13447442 Msa0009220:intron 30.0%
! GTAATTTGTGTGTAAGATAG+AGG - chr1_1:13447701-13447720 Msa0009220:intron 30.0%
! GCATTAACTGATTCAATGTT+TGG + chr1_1:13447929-13447948 None:intergenic 30.0%
! CTTTTTGATATGCTTTCTAG+TGG - chr1_1:13448122-13448141 Msa0009220:intron 30.0%
TGTTGATATTGAGGAGTAAA+TGG + chr1_1:13448215-13448234 None:intergenic 30.0%
! TAGTTGGTTCATGGAAAAAT+TGG - chr1_1:13448475-13448494 Msa0009220:intron 30.0%
!!! TGCCTCACTCTTTTATTTTT+TGG - chr1_1:13448613-13448632 Msa0009220:intron 30.0%
CACCAAAAAATAAAAGAGTG+AGG + chr1_1:13448618-13448637 None:intergenic 30.0%
TTATACGTCTTATGTTCCAT+CGG - chr1_1:13449137-13449156 Msa0009220:intron 30.0%
TAGCATGTAAAAAACTGTCT+TGG - chr1_1:13449248-13449267 Msa0009220:intron 30.0%
AAACATCACAAGTTAGCAAA+CGG + chr1_1:13449286-13449305 None:intergenic 30.0%
CTAGAGGAAACATTGAAAAA+TGG - chr1_1:13449384-13449403 Msa0009220:intron 30.0%
AACATTGAAAAATGGAGAAC+TGG - chr1_1:13449392-13449411 Msa0009220:intron 30.0%
ACATTGAAAAATGGAGAACT+GGG - chr1_1:13449393-13449412 Msa0009220:intron 30.0%
! GTGGTGGAAACATTAAAATA+TGG - chr1_1:13449435-13449454 Msa0009220:intron 30.0%
GTGGAAACATTAAAATATGG+AGG - chr1_1:13449438-13449457 Msa0009220:intron 30.0%
GATGTTAATAAATGGGAAGA+CGG - chr1_1:13449492-13449511 Msa0009220:intron 30.0%
ATGTTAATAAATGGGAAGAC+GGG - chr1_1:13449493-13449512 Msa0009220:intron 30.0%
TTTCCCTACTCTTACTATTT+GGG + chr1_1:13449813-13449832 None:intergenic 30.0%
AAATAGTAAGAGTAGGGAAA+GGG - chr1_1:13449813-13449832 Msa0009220:CDS 30.0%
TGAAAATGTAGTCCTTAGAA+AGG - chr1_1:13449838-13449857 Msa0009220:exon 30.0%
!! ATTTGAGCTAGGTTTTAGTG+TGG - chr1_1:13439920-13439939 Msa0009220:three_prime_UTR 35.0%
TGTCCAGAATTGACAAACAT+TGG + chr1_1:13440113-13440132 None:intergenic 35.0%
TCGTTAAATAGCGGTTATAG+TGG + chr1_1:13440171-13440190 None:intergenic 35.0%
CGGCAGTCATTGAAAAATAT+AGG - chr1_1:13440279-13440298 Msa0009220:three_prime_UTR 35.0%
! GTATCCACCTTTGAAAGAAA+GGG + chr1_1:13440442-13440461 None:intergenic 35.0%
! AGTATCCACCTTTGAAAGAA+AGG + chr1_1:13440443-13440462 None:intergenic 35.0%
CTGAACAAACCACTATATAG+AGG + chr1_1:13440495-13440514 None:intergenic 35.0%
GAATCAATTAAAGCAGAGAG+TGG - chr1_1:13440642-13440661 Msa0009220:CDS 35.0%
TAGACATATCTTAGGCGTAT+CGG - chr1_1:13440714-13440733 Msa0009220:CDS 35.0%
! ATACGATTCAGAGCCTATTT+TGG - chr1_1:13440867-13440886 Msa0009220:CDS 35.0%
TAGTTGACAAATAGCTTCTG+TGG - chr1_1:13441100-13441119 Msa0009220:intron 35.0%
AGTTGACAAATAGCTTCTGT+GGG - chr1_1:13441101-13441120 Msa0009220:intron 35.0%
! TTTTGGTAAATGGGAGAACT+AGG - chr1_1:13441338-13441357 Msa0009220:CDS 35.0%
!! TGATGTTTGAGTTTTGCTCT+TGG - chr1_1:13441450-13441469 Msa0009220:CDS 35.0%
CCAACCGAATTCTCAATATA+TGG + chr1_1:13441485-13441504 None:intergenic 35.0%
CCATATATTGAGAATTCGGT+TGG - chr1_1:13441482-13441501 Msa0009220:CDS 35.0%
!! TTGTCAAAGGTATCAAGAAG+CGG - chr1_1:13441533-13441552 Msa0009220:CDS 35.0%
! ATTGTCCAAGAAGATGCTTT+TGG - chr1_1:13441713-13441732 Msa0009220:intron 35.0%
GAAAGAAACGTAGAATGTTC+AGG - chr1_1:13442346-13442365 Msa0009220:intron 35.0%
GAAGCTTTCCATTACAAAGA+AGG - chr1_1:13442406-13442425 Msa0009220:CDS 35.0%
TGGTAAAGAATTCAATTGGG+AGG + chr1_1:13442515-13442534 None:intergenic 35.0%
AGGTCATTAATTGAGTAGCA+TGG + chr1_1:13442535-13442554 None:intergenic 35.0%
!! AAGTCAAGTTTTATCCCACT+AGG - chr1_1:13442596-13442615 Msa0009220:intron 35.0%
CTTGTTTATAGCCAATCCAT+TGG - chr1_1:13442667-13442686 Msa0009220:intron 35.0%
GGAAGGCCAAAAAAAACTTA+TGG + chr1_1:13442718-13442737 None:intergenic 35.0%
AGTAAGCAGGGTAATTAAGA+TGG + chr1_1:13442771-13442790 None:intergenic 35.0%
CTTAATTACCCTGCTTACTA+TGG - chr1_1:13442772-13442791 Msa0009220:intron 35.0%
!! TTTGAGATGATGGAGTAGTT+GGG + chr1_1:13442842-13442861 None:intergenic 35.0%
!! ATTTGAGATGATGGAGTAGT+TGG + chr1_1:13442843-13442862 None:intergenic 35.0%
TACTGCTTCTTGTAGATACT+TGG - chr1_1:13443321-13443340 Msa0009220:intron 35.0%
TAGTTGCCAAATATTCCTCT+TGG - chr1_1:13443436-13443455 Msa0009220:intron 35.0%
AGTTGCCAAATATTCCTCTT+GGG - chr1_1:13443437-13443456 Msa0009220:intron 35.0%
AATCTGAATTTCCAACGCTA+AGG - chr1_1:13443754-13443773 Msa0009220:intron 35.0%
TTACAAACATACCTTAGCGT+TGG + chr1_1:13443768-13443787 None:intergenic 35.0%
GGCAAATCAATAACTCTACA+TGG + chr1_1:13443840-13443859 None:intergenic 35.0%
CCAAATACTGAACTAGTGTT+TGG + chr1_1:13443861-13443880 None:intergenic 35.0%
CCAAACACTAGTTCAGTATT+TGG - chr1_1:13443858-13443877 Msa0009220:intron 35.0%
AGATATGATCATCAACTTGC+AGG + chr1_1:13443944-13443963 None:intergenic 35.0%
ACTGAAATACAGAATGCACA+TGG - chr1_1:13444484-13444503 Msa0009220:intron 35.0%
ACAGAATGCACATGGTATTA+TGG - chr1_1:13444492-13444511 Msa0009220:intron 35.0%
TGGTATTATGGATGTTCTTG+CGG - chr1_1:13444504-13444523 Msa0009220:intron 35.0%
!!! TTGTTTTGAGGATCCCTTAA+TGG - chr1_1:13444732-13444751 Msa0009220:intron 35.0%
GAAGGGAACAGCAAAAAAAA+TGG + chr1_1:13444788-13444807 None:intergenic 35.0%
GTGTGGTTGTAACATATTTG+TGG - chr1_1:13444857-13444876 Msa0009220:intron 35.0%
TTGTGGGATGAAACAAGTAT+AGG - chr1_1:13444874-13444893 Msa0009220:intron 35.0%
GATTACATGCTAAAATGTGG+GGG - chr1_1:13445006-13445025 Msa0009220:CDS 35.0%
ATTACATGCTAAAATGTGGG+GGG - chr1_1:13445007-13445026 Msa0009220:CDS 35.0%
ATAAAAGTCCTAAATGCCCT+TGG - chr1_1:13445112-13445131 Msa0009220:intron 35.0%
ATGTAGAGAAGTGAAACCAA+GGG + chr1_1:13445131-13445150 None:intergenic 35.0%
AATGTAGAGAAGTGAAACCA+AGG + chr1_1:13445132-13445151 None:intergenic 35.0%
ATTGAAGTGGAAACAAAGAG+TGG - chr1_1:13445754-13445773 Msa0009220:intron 35.0%
TTGAAGTGGAAACAAAGAGT+GGG - chr1_1:13445755-13445774 Msa0009220:intron 35.0%
GTTATTTGGGCTATTTGTGA+TGG - chr1_1:13445803-13445822 Msa0009220:CDS 35.0%
TTCAAGAACAAGTTCAGAAG+GGG + chr1_1:13446006-13446025 None:intergenic 35.0%
CTTCAAGAACAAGTTCAGAA+GGG + chr1_1:13446007-13446026 None:intergenic 35.0%
ACTTCAAGAACAAGTTCAGA+AGG + chr1_1:13446008-13446027 None:intergenic 35.0%
! TGTTGAAAGGAAGGCATATT+CGG + chr1_1:13446031-13446050 None:intergenic 35.0%
GAGCTTAAATGTTGAAAGGA+AGG + chr1_1:13446040-13446059 None:intergenic 35.0%
TCTCGAGCTTAAATGTTGAA+AGG + chr1_1:13446044-13446063 None:intergenic 35.0%
TATCCTTTGCTTTCTGTTTC+AGG - chr1_1:13446115-13446134 Msa0009220:intron 35.0%
ATCCTTTGCTTTCTGTTTCA+GGG - chr1_1:13446116-13446135 Msa0009220:intron 35.0%
! ACAGGAGGTTATTGTTGATT+TGG - chr1_1:13446145-13446164 Msa0009220:intron 35.0%
TAGAACATACAAGCAAAGAG+TGG - chr1_1:13446178-13446197 Msa0009220:CDS 35.0%
CTTACGTAGTTGAGTTTACA+AGG + chr1_1:13446208-13446227 None:intergenic 35.0%
CTTGTAAACTCAACTACGTA+AGG - chr1_1:13446206-13446225 Msa0009220:CDS 35.0%
TAAAACAAAGGTCATAGGCT+TGG + chr1_1:13446354-13446373 None:intergenic 35.0%
TTGAATGTGGGTCACTATAA+TGG + chr1_1:13446613-13446632 None:intergenic 35.0%
TTATAGTGACCCACATTCAA+AGG - chr1_1:13446613-13446632 Msa0009220:intron 35.0%
TGACAAAATAGATTCATGCC+TGG + chr1_1:13447031-13447050 None:intergenic 35.0%
! AGGCATGAATCTATTTTGTC+AGG - chr1_1:13447030-13447049 Msa0009220:intron 35.0%
TCAGGAACTTCTACTCAAAA+TGG - chr1_1:13447048-13447067 Msa0009220:intron 35.0%
TGTAGATATTGATGCTCCTT+TGG - chr1_1:13447113-13447132 Msa0009220:intron 35.0%
ATACTGGCAAACAAACTGAT+GGG - chr1_1:13447148-13447167 Msa0009220:intron 35.0%
AATGTAAAGAAAAGACAGGC+AGG + chr1_1:13447181-13447200 None:intergenic 35.0%
TCCATTAGTAATGTTTCTCG+TGG - chr1_1:13447268-13447287 Msa0009220:intron 35.0%
AAGATAGAGGTTATTGCACT+TGG - chr1_1:13447436-13447455 Msa0009220:intron 35.0%
AGATAGAGGTTATTGCACTT+GGG - chr1_1:13447437-13447456 Msa0009220:intron 35.0%
CATAAAAACGGTGACTTTGA+TGG + chr1_1:13447478-13447497 None:intergenic 35.0%
TCATAACCATCACATTAGTC+CGG + chr1_1:13447843-13447862 None:intergenic 35.0%
GTTAACCTACATATATGTGC+AGG - chr1_1:13447877-13447896 Msa0009220:intron 35.0%
ATTCTGATCATTTACAGGAG+TGG + chr1_1:13448093-13448112 None:intergenic 35.0%
!!! AACGTGTTTTAGTTGGTTCA+TGG - chr1_1:13448466-13448485 Msa0009220:intron 35.0%
TTGAAAGTGATATGTTGGGT+TGG - chr1_1:13448526-13448545 Msa0009220:intron 35.0%
TATATGCAGCCAAATGCTAA+CGG - chr1_1:13448835-13448854 Msa0009220:intron 35.0%
ATACATCTGTTGTGGATACA+TGG + chr1_1:13448989-13449008 None:intergenic 35.0%
ATGTATCCACAACAGATGTA+TGG - chr1_1:13448988-13449007 Msa0009220:intron 35.0%
ATGTATGGAAACCAATTTGC+AGG - chr1_1:13449003-13449022 Msa0009220:intron 35.0%
! TACATTTGCTGCTCAATGTA+TGG + chr1_1:13449063-13449082 None:intergenic 35.0%
TACATTGAGCAGCAAATGTA+TGG - chr1_1:13449063-13449082 Msa0009220:intron 35.0%
ATAAGACGTATAACCCTGAT+TGG + chr1_1:13449130-13449149 None:intergenic 35.0%
TATACGTCTTATGTTCCATC+GGG - chr1_1:13449138-13449157 Msa0009220:intron 35.0%
AAGCCAGAGGATAAGTTATT+CGG - chr1_1:13449171-13449190 Msa0009220:intron 35.0%
TGTTAATAAATGGGAAGACG+GGG - chr1_1:13449494-13449513 Msa0009220:intron 35.0%
ATTCACCTTTAGTACTCCTA+AGG - chr1_1:13449622-13449641 Msa0009220:intron 35.0%
!! CAAAACCTTAGGAGTACTAA+AGG + chr1_1:13449630-13449649 None:intergenic 35.0%
!! TTGTAGTGCACGTTTTTCAA+TGG - chr1_1:13449753-13449772 Msa0009220:CDS 35.0%
CTTTCCCTACTCTTACTATT+TGG + chr1_1:13449814-13449833 None:intergenic 35.0%
CAAATAGTAAGAGTAGGGAA+AGG - chr1_1:13449812-13449831 Msa0009220:CDS 35.0%
TTCCTTACCCATTTCAACAA+CGG + chr1_1:13449920-13449939 None:intergenic 35.0%
! GAAAGGTTTGGGGTTAGAAT+TGG + chr1_1:13439554-13439573 None:intergenic 40.0%
TACCGTTGGAAGAAAGGTTT+GGG + chr1_1:13439565-13439584 None:intergenic 40.0%
ATACCGTTGGAAGAAAGGTT+TGG + chr1_1:13439566-13439585 None:intergenic 40.0%
!! GTTTAGTTTGGTGATACCGT+TGG + chr1_1:13439579-13439598 None:intergenic 40.0%
GCGATGAATTTGGAAGATTG+TGG + chr1_1:13439604-13439623 None:intergenic 40.0%
CAATCTTCCAAATTCATCGC+CGG - chr1_1:13439604-13439623 Msa0009220:intron 40.0%
AAAGATTCCGGCGATGAATT+TGG + chr1_1:13439614-13439633 None:intergenic 40.0%
GAATCTTCTTCGTCAGTGAT+CGG - chr1_1:13439696-13439715 Msa0009220:intron 40.0%
ATCGGAGATGGTGAATTCTA+TGG - chr1_1:13439714-13439733 Msa0009220:intron 40.0%
AGAAAGAACAAAGAACGCGA+GGG + chr1_1:13439834-13439853 None:intergenic 40.0%
AAGAAAGAACAAAGAACGCG+AGG + chr1_1:13439835-13439854 None:intergenic 40.0%
TCGCGTTCTTTGTTCTTTCT+TGG - chr1_1:13439834-13439853 Msa0009220:intron 40.0%
!! TTTTAGTGTGGACTGTGGAA+TGG - chr1_1:13439932-13439951 Msa0009220:three_prime_UTR 40.0%
CAGCCAATGTTTGTCAATTC+TGG - chr1_1:13440107-13440126 Msa0009220:three_prime_UTR 40.0%
TGTTTGTCAATTCTGGACAG+AGG - chr1_1:13440114-13440133 Msa0009220:three_prime_UTR 40.0%
CAATTCTGGACAGAGGAAAA+TGG - chr1_1:13440121-13440140 Msa0009220:three_prime_UTR 40.0%
TGTGCATCAAAGAGCAATAG+CGG - chr1_1:13440206-13440225 Msa0009220:three_prime_UTR 40.0%
TTCATAGAGCAGCGCTATAT+TGG + chr1_1:13440237-13440256 None:intergenic 40.0%
CGACAGAAGTAGTGTTTCAA+AGG - chr1_1:13440377-13440396 Msa0009220:CDS 40.0%
CAGAAGTAGTGTTTCAAAGG+CGG - chr1_1:13440380-13440399 Msa0009220:CDS 40.0%
TCTACTGCCCTTTCTTTCAA+AGG - chr1_1:13440432-13440451 Msa0009220:CDS 40.0%
TCAATTAAAGCAGAGAGTGG+AGG - chr1_1:13440645-13440664 Msa0009220:CDS 40.0%
TTGAGAATTCGGTTGGGTTA+TGG - chr1_1:13441489-13441508 Msa0009220:CDS 40.0%
TCGGTTGGGTTATGGTTATT+AGG - chr1_1:13441497-13441516 Msa0009220:CDS 40.0%
TATGGTTATTAGGCAAGCGA+AGG - chr1_1:13441507-13441526 Msa0009220:CDS 40.0%
!! AAAGGTATCAAGAAGCGGAT+TGG - chr1_1:13441538-13441557 Msa0009220:CDS 40.0%
ACCAGTAAACTTGCCTTTGA+TGG - chr1_1:13442071-13442090 Msa0009220:intron 40.0%
ACCATCAAAGGCAAGTTTAC+TGG + chr1_1:13442075-13442094 None:intergenic 40.0%
!!! AGTTTTCTGGGCTCTGAAAA+TGG + chr1_1:13442118-13442137 None:intergenic 40.0%
TATGGACAATTGGAGTAGTG+AGG + chr1_1:13442555-13442574 None:intergenic 40.0%
! TTGTTGTTGTCGTTGCTGTA+TGG + chr1_1:13442573-13442592 None:intergenic 40.0%
!! TCAAGTTTTATCCCACTAGG+CGG - chr1_1:13442599-13442618 Msa0009220:intron 40.0%
TAACTAGAGTTAGAGGCCAA+TGG + chr1_1:13442686-13442705 None:intergenic 40.0%
AGCAGGGTAATTAAGATGGA+GGG + chr1_1:13442767-13442786 None:intergenic 40.0%
AAGCAGGGTAATTAAGATGG+AGG + chr1_1:13442768-13442787 None:intergenic 40.0%
TGTAGCTTCCATAGTAAGCA+GGG + chr1_1:13442783-13442802 None:intergenic 40.0%
TTGTAGCTTCCATAGTAAGC+AGG + chr1_1:13442784-13442803 None:intergenic 40.0%
!! TTGAGATGATGGAGTAGTTG+GGG + chr1_1:13442841-13442860 None:intergenic 40.0%
CATCATTTGGACAGGTAGTA+AGG + chr1_1:13442975-13442994 None:intergenic 40.0%
TATGAAAGCAGACACAGCAT+AGG + chr1_1:13443236-13443255 None:intergenic 40.0%
! GATACTTGGCAAGAAGCTTT+TGG - chr1_1:13443335-13443354 Msa0009220:intron 40.0%
TATTGTGGATATCTTGCCCT+CGG + chr1_1:13443365-13443384 None:intergenic 40.0%
TGGTATGCAGCATAGTATTG+TGG + chr1_1:13443380-13443399 None:intergenic 40.0%
ACAATACTATGCTGCATACC+AGG - chr1_1:13443379-13443398 Msa0009220:CDS 40.0%
TAAACATTACCAGCAGTTCC+TGG + chr1_1:13443400-13443419 None:intergenic 40.0%
GCAATCCCAAGAGGAATATT+TGG + chr1_1:13443445-13443464 None:intergenic 40.0%
ATTTGCTTATTTCAGCGTGC+CGG - chr1_1:13443600-13443619 Msa0009220:intron 40.0%
CAGATTGTTCAGATCTCTGA+GGG + chr1_1:13443635-13443654 None:intergenic 40.0%
GAAGTCAATGGTTGTGTTTG+TGG + chr1_1:13443675-13443694 None:intergenic 40.0%
! TTTGGAGGGTATGAAGTCAA+TGG + chr1_1:13443687-13443706 None:intergenic 40.0%
TGGAAATTCAGATTCTGCAG+AGG + chr1_1:13443748-13443767 None:intergenic 40.0%
GTATACAGAACCATGATGTC+AGG + chr1_1:13443897-13443916 None:intergenic 40.0%
AGGGATCCTCAAAACAAAGT+GGG + chr1_1:13444729-13444748 None:intergenic 40.0%
AAGGGATCCTCAAAACAAAG+TGG + chr1_1:13444730-13444749 None:intergenic 40.0%
TTCCCTTCCTTTGTAGTCTT+TGG - chr1_1:13444800-13444819 Msa0009220:intron 40.0%
TCCCTTCCTTTGTAGTCTTT+GGG - chr1_1:13444801-13444820 Msa0009220:intron 40.0%
! AAAGTGCCCAAAGACTACAA+AGG + chr1_1:13444810-13444829 None:intergenic 40.0%
ACTCCCATTAACTAGATTCC+CGG + chr1_1:13445084-13445103 None:intergenic 40.0%
!! AAGTGAAACCAAGGGCATTT+AGG + chr1_1:13445123-13445142 None:intergenic 40.0%
TTGAATCCTGAGGCTATGTT+TGG - chr1_1:13445712-13445731 Msa0009220:intron 40.0%
AGAAATCCAAACATAGCCTC+AGG + chr1_1:13445721-13445740 None:intergenic 40.0%
AAACAAAGAGTGGGATGGAA+TGG - chr1_1:13445764-13445783 Msa0009220:intron 40.0%
! CAAATAGCCCAAATAACGGA+AGG + chr1_1:13445800-13445819 None:intergenic 40.0%
GCATTCCATTGTTTGAGAAG+TGG - chr1_1:13445839-13445858 Msa0009220:CDS 40.0%
AGGGGAAACATGGAAAAGAA+TGG + chr1_1:13445988-13446007 None:intergenic 40.0%
TCCTTTGCTTTCTGTTTCAG+GGG - chr1_1:13446117-13446136 Msa0009220:intron 40.0%
!! GGAGGTTATTGTTGATTTGG+TGG - chr1_1:13446148-13446167 Msa0009220:intron 40.0%
TTGAAATTGGAAGAGCTCAG+TGG - chr1_1:13446304-13446323 Msa0009220:intron 40.0%
TAGTTAGCATTAAGCACCCT+TGG + chr1_1:13446384-13446403 None:intergenic 40.0%
! AGGGTGCTTAATGCTAACTA+AGG - chr1_1:13446384-13446403 Msa0009220:CDS 40.0%
GGGTGCTTAATGCTAACTAA+GGG - chr1_1:13446385-13446404 Msa0009220:CDS 40.0%
TGTGATAGAGAGTAGATGGA+AGG + chr1_1:13446563-13446582 None:intergenic 40.0%
CAAGAATGGCCTTTGAATGT+GGG + chr1_1:13446625-13446644 None:intergenic 40.0%
ACAAGAATGGCCTTTGAATG+TGG + chr1_1:13446626-13446645 None:intergenic 40.0%
TTGTATGTGGGTCACAAGAA+TGG + chr1_1:13446639-13446658 None:intergenic 40.0%
!! TCTACATAGGAGGCACTTAA+GGG + chr1_1:13446710-13446729 None:intergenic 40.0%
ATTCAAAGCCTACATCTGCT+CGG - chr1_1:13447085-13447104 Msa0009220:intron 40.0%
GTATCTCCAGTATCAACCAA+AGG + chr1_1:13447132-13447151 None:intergenic 40.0%
! TTGGTTGATACTGGAGATAC+TGG - chr1_1:13447132-13447151 Msa0009220:intron 40.0%
GATACTGGCAAACAAACTGA+TGG - chr1_1:13447147-13447166 Msa0009220:intron 40.0%
GCCACGAGAAACATTACTAA+TGG + chr1_1:13447272-13447291 None:intergenic 40.0%
ATAACAAAAGTAGCCTGCAG+CGG + chr1_1:13447503-13447522 None:intergenic 40.0%
AACTGAACTATTCGAAGGCA+CGG + chr1_1:13447656-13447675 None:intergenic 40.0%
CACTAAAACAGCGACTTTGA+TGG + chr1_1:13447756-13447775 None:intergenic 40.0%
ATAACAAATGTAGCCTGCAG+CGG + chr1_1:13447781-13447800 None:intergenic 40.0%
ACTTAACCGGACTAATGTGA+TGG - chr1_1:13447834-13447853 Msa0009220:intron 40.0%
!! GCAAGTGAAGTATCTGCTTT+TGG + chr1_1:13448041-13448060 None:intergenic 40.0%
! AGGGCATTCTGATCATTTAC+AGG + chr1_1:13448098-13448117 None:intergenic 40.0%
TGCTGCTGTTGTTGATATTG+AGG + chr1_1:13448224-13448243 None:intergenic 40.0%
CATTTGGCACATTTCCATTG+GGG + chr1_1:13448274-13448293 None:intergenic 40.0%
GCATTTGGCACATTTCCATT+GGG + chr1_1:13448275-13448294 None:intergenic 40.0%
AGCATTTGGCACATTTCCAT+TGG + chr1_1:13448276-13448295 None:intergenic 40.0%
AATGGAAATGTGCCAAATGC+TGG - chr1_1:13448275-13448294 Msa0009220:intron 40.0%
TACTGAGGTAAACCAGCATT+TGG + chr1_1:13448290-13448309 None:intergenic 40.0%
ATATTACCATAAGGGGAAGC+TGG + chr1_1:13448380-13448399 None:intergenic 40.0%
TGTACATGACTGAATTGAGG+TGG + chr1_1:13448757-13448776 None:intergenic 40.0%
CTCTGTACATGACTGAATTG+AGG + chr1_1:13448760-13448779 None:intergenic 40.0%
! GGTTATTGACTGCTGACATA+TGG + chr1_1:13448861-13448880 None:intergenic 40.0%
TATGTCAGCAGTCAATAACC+AGG - chr1_1:13448861-13448880 Msa0009220:intron 40.0%
! CAGGTTGGAAGCAATCAATT+GGG - chr1_1:13448880-13448899 Msa0009220:intron 40.0%
TGGTTTCCATACATCTGTTG+TGG + chr1_1:13448997-13449016 None:intergenic 40.0%
GGAAACCAATTTGCAGGTTA+TGG - chr1_1:13449009-13449028 Msa0009220:intron 40.0%
CAATTTGCAGGTTATGGCTA+CGG - chr1_1:13449015-13449034 Msa0009220:intron 40.0%
TACGGTCAACAACAACAACA+GGG - chr1_1:13449033-13449052 Msa0009220:intron 40.0%
ATACGTCTTATGTTCCATCG+GGG - chr1_1:13449139-13449158 Msa0009220:intron 40.0%
GAATAACTTATCCTCTGGCT+TGG + chr1_1:13449172-13449191 None:intergenic 40.0%
AGCCAGAGGATAAGTTATTC+GGG - chr1_1:13449172-13449191 Msa0009220:intron 40.0%
TAAGTTATTCGGGGATCTTG+TGG - chr1_1:13449182-13449201 Msa0009220:intron 40.0%
AAAAATGGAGAACTGGGAGT+GGG - chr1_1:13449399-13449418 Msa0009220:intron 40.0%
GTTAATAAATGGGAAGACGG+GGG - chr1_1:13449495-13449514 Msa0009220:intron 40.0%
!! TAGTGCACGTTTTTCAATGG+AGG - chr1_1:13449756-13449775 Msa0009220:CDS 40.0%
CCTACTCTTACTATTTGGGA+CGG + chr1_1:13449809-13449828 None:intergenic 40.0%
CGTCCCAAATAGTAAGAGTA+GGG - chr1_1:13449807-13449826 Msa0009220:CDS 40.0%
CATGTGATATCCTGTTACGA+TGG + chr1_1:13449871-13449890 None:intergenic 40.0%
TTCACTCACCGTTGTTGAAA+TGG - chr1_1:13449909-13449928 Msa0009220:five_prime_UTR 40.0%
TCACTCACCGTTGTTGAAAT+GGG - chr1_1:13449910-13449929 Msa0009220:five_prime_UTR 40.0%
ACCCCAAACCTTTCTTCCAA+CGG - chr1_1:13439560-13439579 Msa0009220:intron 45.0%
ACCGTTGGAAGAAAGGTTTG+GGG + chr1_1:13439564-13439583 None:intergenic 45.0%
TGGTGATACCGTTGGAAGAA+AGG + chr1_1:13439571-13439590 None:intergenic 45.0%
ATGCGATCGGAGAAAGATTC+CGG + chr1_1:13439626-13439645 None:intergenic 45.0%
GAATCTTTCTCCGATCGCAT+CGG - chr1_1:13439626-13439645 Msa0009220:intron 45.0%
TCGATGTTCATAGCCCAATC+GGG + chr1_1:13439772-13439791 None:intergenic 45.0%
CTCGATGTTCATAGCCCAAT+CGG + chr1_1:13439773-13439792 None:intergenic 45.0%
ACATGCTCAATCATGACCCT+GGG - chr1_1:13439800-13439819 Msa0009220:intron 45.0%
!! CTAGGTTTTAGTGTGGACTG+TGG - chr1_1:13439927-13439946 Msa0009220:three_prime_UTR 45.0%
TTCTGGACAGAGGAAAATGG+CGG - chr1_1:13440124-13440143 Msa0009220:three_prime_UTR 45.0%
TATGAAGCACGGACACGATA+CGG - chr1_1:13440251-13440270 Msa0009220:three_prime_UTR 45.0%
ACTGCCCTTTCTTTCAAAGG+TGG - chr1_1:13440435-13440454 Msa0009220:CDS 45.0%
ACTCCTTCGATACGTATCGA+CGG - chr1_1:13440818-13440837 Msa0009220:CDS 45.0%
! ATCAGAGCGTATTGGCGTAT+CGG - chr1_1:13440844-13440863 Msa0009220:CDS 45.0%
!!! CAGAGCCTATTTTGGCGTAT+CGG - chr1_1:13440875-13440894 Msa0009220:CDS 45.0%
!! AAGCACCGATACGCCAAAAT+AGG + chr1_1:13440883-13440902 None:intergenic 45.0%
ACACATATGCTGTGTGCTAG+TGG - chr1_1:13441156-13441175 Msa0009220:intron 45.0%
ACTCGGGCACATATTACAGA+AGG + chr1_1:13441236-13441255 None:intergenic 45.0%
TGGTAAATGGGAGAACTAGG+TGG - chr1_1:13441341-13441360 Msa0009220:CDS 45.0%
CAAGCGAAGGATGTTGTCAA+AGG - chr1_1:13441520-13441539 Msa0009220:CDS 45.0%
CTCCTTGCACTAACTGTAAG+TGG - chr1_1:13441583-13441602 Msa0009220:CDS 45.0%
CTCCACTTACAGTTAGTGCA+AGG + chr1_1:13441588-13441607 None:intergenic 45.0%
CTTGCACTAACTGTAAGTGG+AGG - chr1_1:13441586-13441605 Msa0009220:CDS 45.0%
GAAGCTTGAACGGAATTGAG+TGG - chr1_1:13442445-13442464 Msa0009220:CDS 45.0%
GTCGTTGCTGTATGGACAAT+TGG + chr1_1:13442565-13442584 None:intergenic 45.0%
!! CAAGTTTTATCCCACTAGGC+GGG - chr1_1:13442600-13442619 Msa0009220:intron 45.0%
!! AAGTTTTATCCCACTAGGCG+GGG - chr1_1:13442601-13442620 Msa0009220:intron 45.0%
AGAGTTAGAGGCCAATGGAT+TGG + chr1_1:13442681-13442700 None:intergenic 45.0%
TCATTGCTAGAGAGAGGTAG+AGG + chr1_1:13442739-13442758 None:intergenic 45.0%
CAACTAGAAAGCAGACCAAC+AGG + chr1_1:13443083-13443102 None:intergenic 45.0%
!! TTGGTCTGCTTTCTAGTTGC+TGG - chr1_1:13443084-13443103 Msa0009220:intron 45.0%
! ACTTGGCAAGAAGCTTTTGG+AGG - chr1_1:13443338-13443357 Msa0009220:intron 45.0%
ATATTCCTCTTGGGATTGCG+TGG - chr1_1:13443446-13443465 Msa0009220:intron 45.0%
TTTGCTTATTTCAGCGTGCC+GGG - chr1_1:13443601-13443620 Msa0009220:intron 45.0%
GCAGATTGTTCAGATCTCTG+AGG + chr1_1:13443636-13443655 None:intergenic 45.0%
GTTTGTGGAGGAGTGAATAC+AGG + chr1_1:13443660-13443679 None:intergenic 45.0%
GTCAATGGTTGTGTTTGTGG+AGG + chr1_1:13443672-13443691 None:intergenic 45.0%
!!! TCAGTCCCCACTTTGTTTTG+AGG - chr1_1:13444720-13444739 Msa0009220:intron 45.0%
GGGATCCTCAAAACAAAGTG+GGG + chr1_1:13444728-13444747 None:intergenic 45.0%
GCCCAAAGACTACAAAGGAA+GGG + chr1_1:13444805-13444824 None:intergenic 45.0%
TGCCCAAAGACTACAAAGGA+AGG + chr1_1:13444806-13444825 None:intergenic 45.0%
TCCCATTAACTAGATTCCCG+GGG + chr1_1:13445082-13445101 None:intergenic 45.0%
CTCCCATTAACTAGATTCCC+GGG + chr1_1:13445083-13445102 None:intergenic 45.0%
! ACAAAGTTTTCTGCTCCGCT+TGG + chr1_1:13445355-13445374 None:intergenic 45.0%
AGTGGAAACAAAGAGTGGGA+TGG - chr1_1:13445759-13445778 Msa0009220:intron 45.0%
CAAGTTCAGAAGGGGAAACA+TGG + chr1_1:13445998-13446017 None:intergenic 45.0%
ATATCATAGAAGGGGACGTG+AGG + chr1_1:13446232-13446251 None:intergenic 45.0%
!! AACTAGAGAGAGAGCACTTC+TGG + chr1_1:13446539-13446558 None:intergenic 45.0%
!! GTCTACATAGGAGGCACTTA+AGG + chr1_1:13446711-13446730 None:intergenic 45.0%
AGAGTGTGGAAGGTCTACAT+AGG + chr1_1:13446723-13446742 None:intergenic 45.0%
AAAGAAGCTCAGAGTGTGGA+AGG + chr1_1:13446733-13446752 None:intergenic 45.0%
GTAGAAAGAAGCTCAGAGTG+TGG + chr1_1:13446737-13446756 None:intergenic 45.0%
GATGAATCACTGCTATGCCA+GGG - chr1_1:13446970-13446989 Msa0009220:intron 45.0%
! GATGCTCCTTTGGTTGATAC+TGG - chr1_1:13447123-13447142 Msa0009220:intron 45.0%
TAACAAAAGTAGCCTGCAGC+GGG + chr1_1:13447502-13447521 None:intergenic 45.0%
TAACAAATGTAGCCTGCAGC+GGG + chr1_1:13447780-13447799 None:intergenic 45.0%
GAGGACCTGCACATATATGT+AGG + chr1_1:13447885-13447904 None:intergenic 45.0%
TATATGTGCAGGTCCTCTTC+TGG - chr1_1:13447888-13447907 Msa0009220:intron 45.0%
CATAGTTATCACCACTGAGC+AGG + chr1_1:13448013-13448032 None:intergenic 45.0%
TCACTTGCTCTTGTTCCTCT+AGG - chr1_1:13448053-13448072 Msa0009220:intron 45.0%
TGATCATTTACAGGAGTGGC+AGG + chr1_1:13448089-13448108 None:intergenic 45.0%
GAGGAGTAAATGGACCAGAT+TGG + chr1_1:13448205-13448224 None:intergenic 45.0%
CAGCAGACATTCACATCTCA+AGG - chr1_1:13448239-13448258 Msa0009220:intron 45.0%
CAGACATTCACATCTCAAGG+TGG - chr1_1:13448242-13448261 Msa0009220:intron 45.0%
!! CAAGGTGGATTTTACCCCAA+TGG - chr1_1:13448257-13448276 Msa0009220:intron 45.0%
TGCAGTGATTGCTCATACTG+AGG + chr1_1:13448305-13448324 None:intergenic 45.0%
!! TGATATGTTGGGTTGGTGTG+TGG - chr1_1:13448533-13448552 Msa0009220:intron 45.0%
GTGATAGGTGCGCAAAATAG+TGG - chr1_1:13448637-13448656 Msa0009220:intron 45.0%
TGACTGAATTGAGGTGGTTG+TGG + chr1_1:13448751-13448770 None:intergenic 45.0%
ACAGAGTTCCGCAAATCATC+AGG - chr1_1:13448774-13448793 Msa0009220:intron 45.0%
CAGAGTTCCGCAAATCATCA+GGG - chr1_1:13448775-13448794 Msa0009220:intron 45.0%
AGAGTTCCGCAAATCATCAG+GGG - chr1_1:13448776-13448795 Msa0009220:intron 45.0%
GACATATGGCCGTTAGCATT+TGG + chr1_1:13448847-13448866 None:intergenic 45.0%
TCAGCAGTCAATAACCAGGT+TGG - chr1_1:13448865-13448884 Msa0009220:intron 45.0%
CCAATTGATTGCTTCCAACC+TGG + chr1_1:13448882-13448901 None:intergenic 45.0%
! CCAGGTTGGAAGCAATCAAT+TGG - chr1_1:13448879-13448898 Msa0009220:intron 45.0%
CAACACCTTGCATATGCTGA+GGG + chr1_1:13448912-13448931 None:intergenic 45.0%
! AGGTGTTGCAGGTCATTACA+TGG - chr1_1:13448924-13448943 Msa0009220:intron 45.0%
! GGTGTTGCAGGTCATTACAT+GGG - chr1_1:13448925-13448944 Msa0009220:intron 45.0%
TGCAGGTCATTACATGGGTA+TGG - chr1_1:13448930-13448949 Msa0009220:intron 45.0%
ATGGCTTCACATCAAGCACA+AGG - chr1_1:13448949-13448968 Msa0009220:intron 45.0%
CGTAGCCATAACCTGCAAAT+TGG + chr1_1:13449017-13449036 None:intergenic 45.0%
CTACGGTCAACAACAACAAC+AGG - chr1_1:13449032-13449051 Msa0009220:intron 45.0%
CGAAACTCCAGTTCCAATCA+GGG - chr1_1:13449114-13449133 Msa0009220:intron 45.0%
CGTATAACCCTGATTGGAAC+TGG + chr1_1:13449124-13449143 None:intergenic 45.0%
!! AACTTATCCTCTGGCTTGGA+AGG + chr1_1:13449168-13449187 None:intergenic 45.0%
GCCAGAGGATAAGTTATTCG+GGG - chr1_1:13449173-13449192 Msa0009220:intron 45.0%
TCCCCGAATAACTTATCCTC+TGG + chr1_1:13449177-13449196 None:intergenic 45.0%
GAAAAATGGAGAACTGGGAG+TGG - chr1_1:13449398-13449417 Msa0009220:intron 45.0%
AAAATGGAGAACTGGGAGTG+GGG - chr1_1:13449400-13449419 Msa0009220:intron 45.0%
CCGTCCCAAATAGTAAGAGT+AGG - chr1_1:13449806-13449825 Msa0009220:CDS 45.0%
GATGGAGTCTTGCCTTTCTA+AGG + chr1_1:13449853-13449872 None:intergenic 45.0%
CACCGTTGTTGAAATGGGTA+AGG - chr1_1:13449915-13449934 Msa0009220:five_prime_UTR 45.0%
TCTTCGTCAGTGATCGGAGA+TGG - chr1_1:13439702-13439721 Msa0009220:intron 50.0%
ATATGCTCATCGGTCCCGAT+TGG - chr1_1:13439755-13439774 Msa0009220:intron 50.0%
TATGCTCATCGGTCCCGATT+GGG - chr1_1:13439756-13439775 Msa0009220:intron 50.0%
GACATGCTCAATCATGACCC+TGG - chr1_1:13439799-13439818 Msa0009220:intron 50.0%
TAGCGCTGCTCTATGAAGCA+CGG - chr1_1:13440240-13440259 Msa0009220:three_prime_UTR 50.0%
TTCAAAGGCGGATACCCTAC+TGG - chr1_1:13440392-13440411 Msa0009220:CDS 50.0%
!! TACCCTACTGGTTTGGCTCA+AGG - chr1_1:13440404-13440423 Msa0009220:CDS 50.0%
CTCCTTGAGCCAAACCAGTA+GGG + chr1_1:13440409-13440428 None:intergenic 50.0%
!! CTACTGGTTTGGCTCAAGGA+GGG - chr1_1:13440408-13440427 Msa0009220:CDS 50.0%
TAGGCGTATCGGAGATGTGT+CGG - chr1_1:13440725-13440744 Msa0009220:CDS 50.0%
ACACCGTCGATACGTATCGA+AGG + chr1_1:13440824-13440843 None:intergenic 50.0%
GACGGTGTATCAGAGCGTAT+TGG - chr1_1:13440836-13440855 Msa0009220:CDS 50.0%
! TTGGCGTATCGGTGCTTCAT+AGG - chr1_1:13440886-13440905 Msa0009220:CDS 50.0%
TGCTAGAGAGAGGTAGAGGA+AGG + chr1_1:13442735-13442754 None:intergenic 50.0%
! GGACAGGTAGTAAGGTACTC+CGG + chr1_1:13442967-13442986 None:intergenic 50.0%
GAGAGACGTGCTTCATGAGA+TGG - chr1_1:13443156-13443175 Msa0009220:intron 50.0%
!! AAGAAGCTTTTGGAGGACCG+AGG - chr1_1:13443345-13443364 Msa0009220:CDS 50.0%
!! AGAAGCTTTTGGAGGACCGA+GGG - chr1_1:13443346-13443365 Msa0009220:CDS 50.0%
TTGCTTATTTCAGCGTGCCG+GGG - chr1_1:13443602-13443621 Msa0009220:intron 50.0%
GGGTAGTTATTCACAGGGTG+TGG - chr1_1:13444840-13444859 Msa0009220:intron 50.0%
! GGGGGTATAAAACTTCTCGC+AGG - chr1_1:13445025-13445044 Msa0009220:CDS 50.0%
AACTAGATTCCCGGGGGATA+GGG + chr1_1:13445075-13445094 None:intergenic 50.0%
TAACTAGATTCCCGGGGGAT+AGG + chr1_1:13445076-13445095 None:intergenic 50.0%
TCCCCCGGGAATCTAGTTAA+TGG - chr1_1:13445077-13445096 Msa0009220:intron 50.0%
CCCATTAACTAGATTCCCGG+GGG + chr1_1:13445081-13445100 None:intergenic 50.0%
CCCCCGGGAATCTAGTTAAT+GGG - chr1_1:13445078-13445097 Msa0009220:intron 50.0%
GCCCCTGAAACAGAAAGCAA+AGG + chr1_1:13446121-13446140 None:intergenic 50.0%
TCTGTTTCAGGGGCTTAGAC+AGG - chr1_1:13446127-13446146 Msa0009220:intron 50.0%
! ACACTAGAGCGTTTGCCCTT+AGG - chr1_1:13446328-13446347 Msa0009220:intron 50.0%
AGGTCATAGGCTTGGCCTAA+GGG + chr1_1:13446346-13446365 None:intergenic 50.0%
AAGGTCATAGGCTTGGCCTA+AGG + chr1_1:13446347-13446366 None:intergenic 50.0%
GTGTGGAAGGTCTACATAGG+AGG + chr1_1:13446720-13446739 None:intergenic 50.0%
GCATAGCAGTGATTCATCCC+TGG + chr1_1:13446968-13446987 None:intergenic 50.0%
GGATGAATCACTGCTATGCC+AGG - chr1_1:13446969-13446988 Msa0009220:intron 50.0%
CATCATTGAGAGCTAGTCCC+TGG + chr1_1:13446990-13447009 None:intergenic 50.0%
ACAAGTTGCCGAGCAGATGT+AGG + chr1_1:13447096-13447115 None:intergenic 50.0%
CTGGCAAACAAACTGATGGG+AGG - chr1_1:13447151-13447170 Msa0009220:intron 50.0%
CCTGCAGCGGGACATAAAAA+CGG + chr1_1:13447490-13447509 None:intergenic 50.0%
GCTGAACCATTGGAAGTAGC+TGG + chr1_1:13447960-13447979 None:intergenic 50.0%
TGCCAAAGCTGATCCCAAGT+GGG - chr1_1:13447986-13448005 Msa0009220:CDS 50.0%
TCATTTACAGGAGTGGCAGG+TGG + chr1_1:13448086-13448105 None:intergenic 50.0%
!! TTGTTGGGTTGGCTGGGTAT+TGG + chr1_1:13448168-13448187 None:intergenic 50.0%
!! ATTGGGTTGTTGGGTTGGCT+GGG + chr1_1:13448174-13448193 None:intergenic 50.0%
! CCAACATTGGGTTGTTGGGT+TGG + chr1_1:13448179-13448198 None:intergenic 50.0%
CCAACCCAACAACCCAATGT+TGG - chr1_1:13448176-13448195 Msa0009220:intron 50.0%
ACCCAACAACCCAATGTTGG+TGG - chr1_1:13448179-13448198 Msa0009220:intron 50.0%
! GCCACCAACATTGGGTTGTT+GGG + chr1_1:13448183-13448202 None:intergenic 50.0%
! CCAGATTGGCCACCAACATT+GGG + chr1_1:13448191-13448210 None:intergenic 50.0%
! ACCAGATTGGCCACCAACAT+TGG + chr1_1:13448192-13448211 None:intergenic 50.0%
TTCTGCAACCTGACCATTCC+AGG + chr1_1:13448348-13448367 None:intergenic 50.0%
CAACAACCAGCTTCCCCTTA+TGG - chr1_1:13448371-13448390 Msa0009220:intron 50.0%
!! TGTTGGGTTGGTGTGTGGAA+TGG - chr1_1:13448538-13448557 Msa0009220:intron 50.0%
TGTGGATACTGAGGTGGTAG+TGG + chr1_1:13448733-13448752 None:intergenic 50.0%
TGAGGTGGTTGTGGATACTG+AGG + chr1_1:13448742-13448761 None:intergenic 50.0%
TTGAGGCCCCTGATGATTTG+CGG + chr1_1:13448785-13448804 None:intergenic 50.0%
TGGCCATAACCCATTGCTTG+AGG + chr1_1:13448802-13448821 None:intergenic 50.0%
!! TCAAGCAATGGGTTATGGCC+AGG - chr1_1:13448801-13448820 Msa0009220:intron 50.0%
GCATATACATACCACCAGCC+TGG + chr1_1:13448822-13448841 None:intergenic 50.0%
ATGCACCCTCAGCATATGCA+AGG - chr1_1:13448904-13448923 Msa0009220:intron 50.0%
GCAACACCTTGCATATGCTG+AGG + chr1_1:13448913-13448932 None:intergenic 50.0%
!! CAGCATATGCAAGGTGTTGC+AGG - chr1_1:13448913-13448932 Msa0009220:intron 50.0%
GCTTCACATCAAGCACAAGG+TGG - chr1_1:13448952-13448971 Msa0009220:intron 50.0%
GCGAAACTCCAGTTCCAATC+AGG - chr1_1:13449113-13449132 Msa0009220:intron 50.0%
ATTCGGGGATCTTGTGGACA+TGG - chr1_1:13449188-13449207 Msa0009220:intron 50.0%
GTGAAGCCGAAAACAACTCC+AGG - chr1_1:13449216-13449235 Msa0009220:intron 50.0%
!! GCTCGACCTGGAGTTGTTTT+CGG + chr1_1:13449225-13449244 None:intergenic 50.0%
AAAACAACTCCAGGTCGAGC+TGG - chr1_1:13449225-13449244 Msa0009220:intron 50.0%
AAATGGAGAACTGGGAGTGG+GGG - chr1_1:13449401-13449420 Msa0009220:intron 50.0%
AGGCAAGACTCCATCGTAAC+AGG - chr1_1:13449858-13449877 Msa0009220:five_prime_UTR 50.0%
TCTTTCTCCGATCGCATCGG+TGG - chr1_1:13439629-13439648 Msa0009220:intron 55.0%
GCCACGAGCGATATGCTCAT+CGG - chr1_1:13439745-13439764 Msa0009220:intron 55.0%
ACCGATGAGCATATCGCTCG+TGG + chr1_1:13439749-13439768 None:intergenic 55.0%
ACGGACACGATACGGCGATA+CGG - chr1_1:13440259-13440278 Msa0009220:three_prime_UTR 55.0%
! AGGCGGATACCCTACTGGTT+TGG - chr1_1:13440397-13440416 Msa0009220:CDS 55.0%
CCTCCTTGAGCCAAACCAGT+AGG + chr1_1:13440410-13440429 None:intergenic 55.0%
!! CCTACTGGTTTGGCTCAAGG+AGG - chr1_1:13440407-13440426 Msa0009220:CDS 55.0%
TTTAGTCGACCCCGCCTAGT+GGG + chr1_1:13442613-13442632 None:intergenic 55.0%
ATTTAGTCGACCCCGCCTAG+TGG + chr1_1:13442614-13442633 None:intergenic 55.0%
ACTAGGCGGGGTCGACTAAA+TGG - chr1_1:13442613-13442632 Msa0009220:intron 55.0%
GCAGCGTCATTGCTAGAGAG+AGG + chr1_1:13442745-13442764 None:intergenic 55.0%
! CAGGTAGTAAGGTACTCCGG+TGG + chr1_1:13442964-13442983 None:intergenic 55.0%
TGCTGCATACCAGGAACTGC+TGG - chr1_1:13443388-13443407 Msa0009220:CDS 55.0%
TTCCTCTTGGGATTGCGTGG+AGG - chr1_1:13443449-13443468 Msa0009220:intron 55.0%
TTCCTCCACGCAATCCCAAG+AGG + chr1_1:13443454-13443473 None:intergenic 55.0%
! TCTCTGAGGGAATACTGCCC+CGG + chr1_1:13443622-13443641 None:intergenic 55.0%
CCGCGTCACGTATGTTTGGA+GGG + chr1_1:13443701-13443720 None:intergenic 55.0%
CCCTCCAAACATACGTGACG+CGG - chr1_1:13443698-13443717 Msa0009220:intron 55.0%
TCCGCGTCACGTATGTTTGG+AGG + chr1_1:13443702-13443721 None:intergenic 55.0%
GCATCCGCGTCACGTATGTT+TGG + chr1_1:13443705-13443724 None:intergenic 55.0%
ACATACGTGACGCGGATGCT+CGG - chr1_1:13443706-13443725 Msa0009220:intron 55.0%
ACTAGATTCCCGGGGGATAG+GGG + chr1_1:13445074-13445093 None:intergenic 55.0%
GTTTCAGGGGCTTAGACAGG+AGG - chr1_1:13446130-13446149 Msa0009220:intron 55.0%
ATCTGCAGCGTCTACTTGCC+AGG - chr1_1:13447010-13447029 Msa0009220:intron 55.0%
!! CCGTTTTTATGTCCCGCTGC+AGG - chr1_1:13447487-13447506 Msa0009220:intron 55.0%
!!! CTGTTTTAGTGTCCCGCTGC+AGG - chr1_1:13447765-13447784 Msa0009220:intron 55.0%
! TCCTCTTCTGGTGCTGAAGC+AGG - chr1_1:13447900-13447919 Msa0009220:intron 55.0%
! CCTCTTCTGGTGCTGAAGCA+GGG - chr1_1:13447901-13447920 Msa0009220:intron 55.0%
GGCAGGTACAGCTGAACCAT+TGG + chr1_1:13447970-13447989 None:intergenic 55.0%
! CACTTGGGATCAGCTTTGGC+AGG + chr1_1:13447987-13448006 None:intergenic 55.0%
CTGCCAAAGCTGATCCCAAG+TGG - chr1_1:13447985-13448004 Msa0009220:CDS 55.0%
GTCCCACTTGGGATCAGCTT+TGG + chr1_1:13447991-13448010 None:intergenic 55.0%
GCAGGTGGTTGTTCTCCTAG+AGG + chr1_1:13448071-13448090 None:intergenic 55.0%
!! CATTGGGTTGTTGGGTTGGC+TGG + chr1_1:13448175-13448194 None:intergenic 55.0%
! GGCCACCAACATTGGGTTGT+TGG + chr1_1:13448184-13448203 None:intergenic 55.0%
!! CCCAATGTTGGTGGCCAATC+TGG - chr1_1:13448188-13448207 Msa0009220:intron 55.0%
AGTACAGCTCCTGCCTGGAA+TGG - chr1_1:13448332-13448351 Msa0009220:intron 55.0%
TGCTACCGGACTGCCATTGT+CGG + chr1_1:13448698-13448717 None:intergenic 55.0%
GGATACTGACCACCTGCTAC+CGG + chr1_1:13448712-13448731 None:intergenic 55.0%
GGTGGTTGTGGATACTGAGG+TGG + chr1_1:13448739-13448758 None:intergenic 55.0%
TCATCAGGGGCCTCAAGCAA+TGG - chr1_1:13448789-13448808 Msa0009220:intron 55.0%
CATCAGGGGCCTCAAGCAAT+GGG - chr1_1:13448790-13448809 Msa0009220:intron 55.0%
!! GGGCCTCAAGCAATGGGTTA+TGG - chr1_1:13448796-13448815 Msa0009220:intron 55.0%
TCAAGCACAAGGTGGTCCTG+CGG - chr1_1:13448960-13448979 Msa0009220:intron 55.0%
TGTGGATACATGGAAGCCGC+AGG + chr1_1:13448979-13448998 None:intergenic 55.0%
TACATGCTACCAGCTCGACC+TGG + chr1_1:13449237-13449256 None:intergenic 55.0%
AGTGGGGGAGAAAGAGCAAG+TGG - chr1_1:13449416-13449435 Msa0009220:intron 55.0%
! AAATGGGAAGACGGGGGCAT+TGG - chr1_1:13449501-13449520 Msa0009220:intron 55.0%
!! AATGGGAAGACGGGGGCATT+GGG - chr1_1:13449502-13449521 Msa0009220:intron 55.0%
! CTCCGATCGCATCGGTGGTT+CGG - chr1_1:13439634-13439653 Msa0009220:intron 60.0%
GACCGAACCACCGATGCGAT+CGG + chr1_1:13439639-13439658 None:intergenic 60.0%
!! CGCATCGGTGGTTCGGTCTA+CGG - chr1_1:13439641-13439660 Msa0009220:intron 60.0%
!! GTGGTTCGGTCTACGGTCGT+CGG - chr1_1:13439648-13439667 Msa0009220:intron 60.0%
GCGTATCGGAGATGTGTCGG+CGG - chr1_1:13440728-13440747 Msa0009220:CDS 60.0%
! GATGTGTCGGCGGTGTATCG+TGG - chr1_1:13440738-13440757 Msa0009220:CDS 60.0%
GTGGCGTGTCAGCGACGTAT+TGG - chr1_1:13440757-13440776 Msa0009220:CDS 60.0%
CCCTGCTTCAGCACCAGAAG+AGG + chr1_1:13447904-13447923 None:intergenic 60.0%
CCATTGGAAGTAGCTGGCGC+AGG + chr1_1:13447954-13447973 None:intergenic 60.0%
CCTGCGCCAGCTACTTCCAA+TGG - chr1_1:13447951-13447970 Msa0009220:intron 60.0%
CCACTGAGCAGGTCCCACTT+GGG + chr1_1:13448002-13448021 None:intergenic 60.0%
ACCACTGAGCAGGTCCCACT+TGG + chr1_1:13448003-13448022 None:intergenic 60.0%
!! GGCTGGGTATTGGCAGACGT+AGG + chr1_1:13448158-13448177 None:intergenic 60.0%
CGCAAAGTACAGCTCCTGCC+TGG - chr1_1:13448327-13448346 Msa0009220:intron 60.0%
AGCTCCTGCCTGGAATGGTC+AGG - chr1_1:13448337-13448356 Msa0009220:intron 60.0%
GCAACCTGACCATTCCAGGC+AGG + chr1_1:13448344-13448363 None:intergenic 60.0%
ATCATTGCCGCCACCACCCT+GGG - chr1_1:13448660-13448679 Msa0009220:intron 60.0%
ACCACCCTGGGAAGCTCAAC+CGG - chr1_1:13448672-13448691 Msa0009220:intron 60.0%
GAAGCTCAACCGGCCGACAA+TGG - chr1_1:13448682-13448701 Msa0009220:intron 60.0%
GACAATGGCAGTCCGGTAGC+AGG - chr1_1:13448697-13448716 Msa0009220:intron 60.0%
AATGGCAGTCCGGTAGCAGG+TGG - chr1_1:13448700-13448719 Msa0009220:intron 60.0%
!! GCAATGGGTTATGGCCAGGC+TGG - chr1_1:13448805-13448824 Msa0009220:intron 60.0%
! ATGGGTTATGGCCAGGCTGG+TGG - chr1_1:13448808-13448827 Msa0009220:intron 60.0%
GGGGGAGAAAGAGCAAGTGG+TGG - chr1_1:13449419-13449438 Msa0009220:intron 60.0%
! GTTTTCCCGCCCCTATCCCC+CGG - chr1_1:13445062-13445081 Msa0009220:CDS 65.0%
! TTTTCCCGCCCCTATCCCCC+GGG - chr1_1:13445063-13445082 Msa0009220:CDS 65.0%
AGATTCCCGGGGGATAGGGG+CGG + chr1_1:13445071-13445090 None:intergenic 65.0%
CCCAAGTGGGACCTGCTCAG+TGG - chr1_1:13447999-13448018 Msa0009220:CDS 65.0%
GATCATTGCCGCCACCACCC+TGG - chr1_1:13448659-13448678 Msa0009220:intron 65.0%
! TGAGCTTCCCAGGGTGGTGG+CGG + chr1_1:13448670-13448689 None:intergenic 65.0%
GGTTGAGCTTCCCAGGGTGG+TGG + chr1_1:13448673-13448692 None:intergenic 65.0%
TCGGCCGGTTGAGCTTCCCA+GGG + chr1_1:13448679-13448698 None:intergenic 65.0%
ACCGGCCGACAATGGCAGTC+CGG - chr1_1:13448690-13448709 Msa0009220:intron 65.0%
ACCGGACTGCCATTGTCGGC+CGG + chr1_1:13448694-13448713 None:intergenic 65.0%
GGCTTGGAAGGCTTCCCCGA+TGG + chr1_1:13449156-13449175 None:intergenic 65.0%
GGGGAAGCCTTCCAAGCCAG+AGG - chr1_1:13449158-13449177 Msa0009220:intron 65.0%
! CGCGAGGGAGCACGTACCCA+GGG + chr1_1:13439819-13439838 None:intergenic 70.0%
! ACGCGAGGGAGCACGTACCC+AGG + chr1_1:13439820-13439839 None:intergenic 70.0%
TGCTCGGCCAGACGCAGCTG+AGG - chr1_1:13443722-13443741 Msa0009220:intron 70.0%
GCAGAGGCCTCAGCTGCGTC+TGG + chr1_1:13443732-13443751 None:intergenic 70.0%
GATTCCCGGGGGATAGGGGC+GGG + chr1_1:13445070-13445089 None:intergenic 70.0%
GCCGGTTGAGCTTCCCAGGG+TGG + chr1_1:13448676-13448695 None:intergenic 70.0%
GTCGGCCGGTTGAGCTTCCC+AGG + chr1_1:13448680-13448699 None:intergenic 70.0%
!! GGGAAGACGGGGGCATTGGG+TGG - chr1_1:13449505-13449524 Msa0009220:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 13439537 13450027 13439537 ID=Msa0009220;Name=Msa0009220
chr1_1 mRNA 13439537 13450027 13439537 ID=Msa0009220-mRNA-1;Parent=Msa0009220;Name=Msa0009220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=184|1|1|1|0.9|0.81|11|430|677
chr1_1 exon 13439537 13439568 13439537 ID=Msa0009220-mRNA-1:exon:5112;Parent=Msa0009220-mRNA-1
chr1_1 exon 13439909 13440920 13439909 ID=Msa0009220-mRNA-1:exon:5111;Parent=Msa0009220-mRNA-1
chr1_1 exon 13441172 13441665 13441172 ID=Msa0009220-mRNA-1:exon:5110;Parent=Msa0009220-mRNA-1
chr1_1 exon 13442392 13442595 13442392 ID=Msa0009220-mRNA-1:exon:5109;Parent=Msa0009220-mRNA-1
chr1_1 exon 13443342 13443427 13443342 ID=Msa0009220-mRNA-1:exon:5108;Parent=Msa0009220-mRNA-1
chr1_1 exon 13445003 13445084 13445003 ID=Msa0009220-mRNA-1:exon:5107;Parent=Msa0009220-mRNA-1
chr1_1 exon 13445789 13445949 13445789 ID=Msa0009220-mRNA-1:exon:5106;Parent=Msa0009220-mRNA-1
chr1_1 exon 13446155 13446268 13446155 ID=Msa0009220-mRNA-1:exon:5105;Parent=Msa0009220-mRNA-1
chr1_1 exon 13446366 13446464 13446366 ID=Msa0009220-mRNA-1:exon:5104;Parent=Msa0009220-mRNA-1
chr1_1 exon 13447967 13448045 13447967 ID=Msa0009220-mRNA-1:exon:5103;Parent=Msa0009220-mRNA-1
chr1_1 exon 13449743 13450027 13449743 ID=Msa0009220-mRNA-1:exon:5102;Parent=Msa0009220-mRNA-1
chr1_1 five_prime_UTR 13449844 13450027 13449844 ID=Msa0009220-mRNA-1:five_prime_utr;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13449743 13449843 13449743 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13447967 13448045 13447967 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13446366 13446464 13446366 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13446155 13446268 13446155 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13445789 13445949 13445789 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13445003 13445084 13445003 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13443342 13443427 13443342 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13442392 13442595 13442392 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13441172 13441665 13441172 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 CDS 13440307 13440920 13440307 ID=Msa0009220-mRNA-1:cds;Parent=Msa0009220-mRNA-1
chr1_1 three_prime_UTR 13439909 13440306 13439909 ID=Msa0009220-mRNA-1:three_prime_utr;Parent=Msa0009220-mRNA-1
chr1_1 three_prime_UTR 13439537 13439568 13439537 ID=Msa0009220-mRNA-1:three_prime_utr;Parent=Msa0009220-mRNA-1
Gene Sequence

>Msa0009220

ATGGTGAATTCTATGGTTGAACGCGCCACGAGCGATATGCTCATCGGTCCCGATTGGGCTATGAACATCGAGATCTGTGACATGCTCAATCATGACCCTGGGCAAGCGAAGGATGTTGTCAAAGGTATCAAGAAGCGGATTGGAAGTAGAAATTCTAAAGTTCAACTCCTTGCACTAACTTTGCTGGAAACAATCATAAAGAACTGTGGAGATATTGTTCACATGCATGTTGCAGAGAGAGACGTGCTTCATGAGATGGTGAAAATAGTAAAGAAAAAGCCTGATTTTCATGTCAAAGAGAAGATACTGCTTCTTGTAGATACTTGGCAAGAAGCTTTTGGAGGACCGAGGGCAAGATATCCACAATACTATGCTGCATACCAGGAACTGCTGCGTGCCGGGGCAGTATTCCCTCAGAGATCTGAACAATCTGCACCTGTATTCACTCCTCCACAAACACAACCATTGACTTCATACCCTCCAAACATACGTGACGCGGATGCTCGGCCAGACGCAGCTGAGGCCTCTGCAGAATCTGAATTTCCAACGCTAAGTTTGACTGAAATACAGAATGCACATGGTATTATGGATGTTCTTGCGGAAATGCTGAATGCAATAGACCCTAACAACAAAGAAGGGCTTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTAGAACATACAAGCAAAGAGTGGTACACCTTGTAAACTCAACTACGGATGAATCACTGCTATGCCAGGGACTAGCTCTCAATGATGATCTGCAGCGTCTACTTGCCAGGCATGAATCTATTTTGTCAGGAACTTCTACTCAAAATGGAAATCAGATAGAGGATTCAAAGCCTACATCTGCTCGGCAACTTGTAGATATTGATGCTCCTTTGGTTGATACTGGAGATACTGGCAAACAAACTGATGGGAGGTCCTCTTCTGGTGCTGAAGCAGGGTCCCAAACATTGAATCAGTTAATGCTTCCTGCGCCAGCTACTTCCAATGGTTCAGCTGTACCTGCCAAAGCTGATCCCAAGTGGGACCTGCTCAGTGGTGATAACTATGACTCACCAAAAGCAGATACTTCACTTGCTCTTGTTCCTCTAGGAGAACAACCACCTGCCACTCCTGTAAATGATCAGAATGCCCTTGTTCTTTTTGATATGCTTTCTAGTGGAGACAATGCACCTACGTCTGCCAATACCCAGCCAACCCAACAACCCAATGTTGGTGGCCAATCTGGTCCATTTACTCCTCAATATCAACAACAGCAGCAGACATTCACATCTCAAGGTGGATTTTACCCCAATGGAAATGTGCCAAATGCTGGTTTACCTCAGTATGAGCAATCACTGCATACGCAAAGTACAGCTCCTGCCTGGAATGGTCAGGTTGCAGAACAGCAACAACCAGCTTCCCCTTATGGTGCGCAAAATAGTGGATCATTGCCGCCACCACCCTGGGAAGCTCAACCGGCCGACAATGGCAGTCCGGTAGCAGGTGGTCAGTATCCACTACCACCTCAGTATCCACAACCACCTCAATTCAGTCATGTACAGAGTTCCGCAAATCATCAGGGGCCTCAAGCAATGGGTTATGGCCAGGCTGGTGGTATGTATATGCAGCCAAATGCTAACGGCCATATGTCAGCAGTCAATAACCAGGTTGGAAGCAATCAATTGGGCATGCACCCTCAGCATATGCAAGGTGTTGCAGGTCATTACATGGGTATGGCTTCACATCAAGCACAAGGTGGTCCTGCGGCTTCCATGTATCCACAACAGATGTATGGAAACCAATTTGCAGGTTATGGCTACGGTCAACAACAACAACAGGGAGTTCCATACATTGAGCAGCAAATGTATGGCATGTCTGTCAGAGATGATAGTTATTTGCGAAACTCCAGTTCCAATCAGGGTTATACGTCTTATGTTCCATCGGGGAAGCCTTCCAAGCCAGAGGATAAGTTATTCGGGGATCTTGTGGACATGGCAAAAGTGAAGCCGAAAACAACTCCAGGTCGAGCTGGTAGCATGTAA
Protein sequence

>Msa0009220

MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDFHVKEKILLLVDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLTSYPPNIRDADARPDAAEASAESEFPTLSLTEIQNAHGIMDVLAEMLNAIDPNNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDDLQRLLARHESILSGTSTQNGNQIEDSKPTSARQLVDIDAPLVDTGDTGKQTDGRSSSGAEAGSQTLNQLMLPAPATSNGSAVPAKADPKWDLLSGDNYDSPKADTSLALVPLGEQPPATPVNDQNALVLFDMLSSGDNAPTSANTQPTQQPNVGGQSGPFTPQYQQQQQTFTSQGGFYPNGNVPNAGLPQYEQSLHTQSTAPAWNGQVAEQQQPASPYGAQNSGSLPPPPWEAQPADNGSPVAGGQYPLPPQYPQPPQFSHVQSSANHQGPQAMGYGQAGGMYMQPNANGHMSAVNNQVGSNQLGMHPQHMQGVAGHYMGMASHQAQGGPAASMYPQQMYGNQFAGYGYGQQQQQGVPYIEQQMYGMSVRDDSYLRNSSSNQGYTSYVPSGKPSKPEDKLFGDLVDMAKVKPKTTPGRAGSM*