Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009570 | Msa0554440 | 0.815647 | 8.307145e-52 | -8.615850e-47 |
| Msa0009570 | Msa1453350 | 0.855669 | 5.404005e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009570 | MtrunA17_Chr1g0158661 | 76.923 | 273 | 60 | 2 | 1 | 271 | 1 | 272 | 1.17e-146 | 426 |
| Msa0009570 | MtrunA17_Chr1g0158631 | 76.119 | 268 | 52 | 4 | 1 | 258 | 1 | 266 | 3.72e-136 | 400 |
| Msa0009570 | MtrunA17_Chr1g0157881 | 37.132 | 272 | 118 | 8 | 37 | 257 | 58 | 327 | 8.35e-47 | 166 |
| Msa0009570 | MtrunA17_Chr1g0158061 | 42.063 | 252 | 107 | 9 | 37 | 266 | 33 | 267 | 9.25e-47 | 158 |
| Msa0009570 | MtrunA17_Chr3g0088331 | 42.500 | 240 | 112 | 11 | 37 | 264 | 44 | 269 | 5.50e-46 | 155 |
| Msa0009570 | MtrunA17_Chr1g0157911 | 43.388 | 242 | 119 | 10 | 37 | 264 | 40 | 277 | 7.53e-46 | 163 |
| Msa0009570 | MtrunA17_Chr1g0157791 | 40.370 | 270 | 125 | 10 | 13 | 258 | 3 | 260 | 6.42e-44 | 158 |
| Msa0009570 | MtrunA17_Chr1g0157861 | 38.376 | 271 | 122 | 11 | 28 | 257 | 36 | 302 | 1.98e-43 | 157 |
| Msa0009570 | MtrunA17_Chr1g0158151 | 41.339 | 254 | 117 | 9 | 37 | 270 | 34 | 275 | 6.05e-43 | 155 |
| Msa0009570 | MtrunA17_Chr1g0158411 | 37.193 | 285 | 142 | 9 | 3 | 264 | 8 | 278 | 7.43e-43 | 155 |
| Msa0009570 | MtrunA17_Chr1g0158731 | 43.243 | 222 | 101 | 7 | 37 | 249 | 41 | 246 | 6.54e-42 | 145 |
| Msa0009570 | MtrunA17_Chr1g0157961 | 44.651 | 215 | 100 | 6 | 37 | 241 | 41 | 246 | 1.90e-40 | 142 |
| Msa0009570 | MtrunA17_Chr1g0158041 | 41.667 | 252 | 112 | 11 | 30 | 257 | 26 | 266 | 3.33e-40 | 147 |
| Msa0009570 | MtrunA17_Chr1g0158191 | 42.273 | 220 | 106 | 7 | 37 | 243 | 32 | 243 | 3.19e-39 | 145 |
| Msa0009570 | MtrunA17_Chr6g0467711 | 38.912 | 239 | 124 | 10 | 36 | 263 | 45 | 272 | 4.95e-39 | 144 |
| Msa0009570 | MtrunA17_Chr1g0158331 | 36.078 | 255 | 109 | 9 | 37 | 257 | 51 | 285 | 4.80e-38 | 136 |
| Msa0009570 | MtrunA17_Chr1g0157991 | 42.661 | 218 | 104 | 6 | 37 | 241 | 36 | 245 | 2.13e-37 | 139 |
| Msa0009570 | MtrunA17_Chr1g0158461 | 35.659 | 258 | 128 | 8 | 28 | 257 | 46 | 293 | 1.85e-36 | 131 |
| Msa0009570 | MtrunA17_Chr1g0158761 | 35.841 | 226 | 115 | 6 | 18 | 236 | 9 | 211 | 8.78e-35 | 132 |
| Msa0009570 | MtrunA17_Chr1g0158571 | 67.708 | 96 | 27 | 3 | 164 | 258 | 1 | 93 | 1.05e-32 | 125 |
| Msa0009570 | MtrunA17_Chr1g0158121 | 64.634 | 82 | 29 | 0 | 37 | 118 | 37 | 118 | 2.33e-30 | 110 |
| Msa0009570 | MtrunA17_Chr1g0158541 | 31.852 | 270 | 148 | 11 | 17 | 262 | 18 | 275 | 1.02e-29 | 117 |
| Msa0009570 | MtrunA17_Chr1g0158301 | 31.365 | 271 | 144 | 13 | 17 | 262 | 20 | 273 | 1.18e-26 | 108 |
| Msa0009570 | MtrunA17_Chr1g0160701 | 34.404 | 218 | 119 | 8 | 35 | 241 | 44 | 248 | 2.85e-24 | 102 |
| Msa0009570 | MtrunA17_Chr1g0160761 | 31.984 | 247 | 139 | 8 | 17 | 247 | 7 | 240 | 8.04e-23 | 97.8 |
| Msa0009570 | MtrunA17_Chr1g0160561 | 33.871 | 248 | 132 | 11 | 14 | 241 | 8 | 243 | 1.33e-21 | 94.0 |
| Msa0009570 | MtrunA17_Chr1g0160711 | 30.894 | 246 | 138 | 9 | 31 | 261 | 22 | 250 | 4.23e-21 | 92.8 |
| Msa0009570 | MtrunA17_Chr1g0160721 | 29.057 | 265 | 153 | 9 | 7 | 257 | 7 | 250 | 1.50e-20 | 90.9 |
| Msa0009570 | MtrunA17_Chr1g0160661 | 28.947 | 266 | 159 | 8 | 1 | 257 | 21 | 265 | 3.81e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAATTTCCTGGATAAA+AGG | 0.188142 | 1_1:+14119273 | Msa0009570:CDS |
| ACTAGCATTGTGAGTGAAAA+TGG | 0.223619 | 1_1:+14117949 | Msa0009570:exon |
| CAATTGTTGGGTTGAATGTT+TGG | 0.270020 | 1_1:-14118259 | None:intergenic |
| TGATTCTTGCCACAGTGGTC+TGG | 0.272991 | 1_1:-14118130 | None:intergenic |
| TATCACAGCTCTTGCATATC+TGG | 0.294358 | 1_1:-14117999 | None:intergenic |
| GCTATGGATTTGAAATTTCC+TGG | 0.305840 | 1_1:+14119265 | Msa0009570:CDS |
| TTCACTCACAATGCTAGTTT+TGG | 0.307657 | 1_1:-14117944 | None:intergenic |
| ACAACATATATGTTATTGTT+GGG | 0.323036 | 1_1:+14118494 | Msa0009570:CDS |
| GGACCCACAACTTGGAATAT+TGG | 0.351925 | 1_1:+14118516 | Msa0009570:CDS |
| GTACACTCCATGTAAATTAC+AGG | 0.360082 | 1_1:-14118409 | None:intergenic |
| AGGGAGAGAGGAGCAATTGT+TGG | 0.363569 | 1_1:-14118272 | None:intergenic |
| ATGTTACTCTCACATCCTTC+TGG | 0.370866 | 1_1:+14118560 | Msa0009570:CDS |
| GCTTACCAGGATAACATTAT+AGG | 0.380009 | 1_1:+14118595 | Msa0009570:CDS |
| AATTGTTGGGTTGAATGTTT+GGG | 0.419800 | 1_1:-14118258 | None:intergenic |
| TGTTACTCTCACATCCTTCT+GGG | 0.433436 | 1_1:+14118561 | Msa0009570:CDS |
| CACAACATATATGTTATTGT+TGG | 0.439421 | 1_1:+14118493 | Msa0009570:CDS |
| ATGTTATCCTGGTAAGCATA+TGG | 0.443296 | 1_1:-14118589 | None:intergenic |
| TAAGAAGAAGTGAGGGAGAG+AGG | 0.444522 | 1_1:-14118284 | None:intergenic |
| GATTCTTGCCACAGTGGTCT+GGG | 0.449055 | 1_1:-14118129 | None:intergenic |
| TCGGAATGGATGGGTTATGT+TGG | 0.460332 | 1_1:-14118095 | None:intergenic |
| TACATATCCACAACGTTACT+AGG | 0.473319 | 1_1:-14118439 | None:intergenic |
| ATCTAGTCCTGTAATTTACA+TGG | 0.474394 | 1_1:+14118402 | Msa0009570:CDS |
| GGGAGAGAGGAGCAATTGTT+GGG | 0.477982 | 1_1:-14118271 | None:intergenic |
| GGCTCCAATATTCCAAGTTG+TGG | 0.482055 | 1_1:-14118520 | None:intergenic |
| ATTCAGAAGGCACTAGGCTA+TGG | 0.492318 | 1_1:+14119249 | Msa0009570:CDS |
| TAGTGGTATAAGAAGAAGTG+AGG | 0.493961 | 1_1:-14118292 | None:intergenic |
| TTGTACCTATAATGTTATCC+TGG | 0.497453 | 1_1:-14118600 | None:intergenic |
| CAACCTTGTTCTTCTTCCTG+TGG | 0.499551 | 1_1:+14118064 | Msa0009570:CDS |
| ACAGTATTGAAGTTGTATGA+TGG | 0.501656 | 1_1:+14118181 | Msa0009570:CDS |
| AATGTAATCTTAAGTCAAGA+TGG | 0.510542 | 1_1:-14117896 | None:intergenic |
| ATTGTTGGGGACCCACAACT+TGG | 0.518244 | 1_1:+14118508 | Msa0009570:CDS |
| ATGGTTTCAACCTCCAACGT+TGG | 0.529181 | 1_1:+14117968 | Msa0009570:CDS |
| GAAAATGTAACAAAGGACTA+AGG | 0.532231 | 1_1:-14119370 | None:intergenic |
| CAGGAAGAAGAACAAGGTTG+TGG | 0.536019 | 1_1:-14118061 | None:intergenic |
| TGCTACCTCAAGGACCCTAC+TGG | 0.537359 | 1_1:+14119315 | Msa0009570:CDS |
| AGTGGTATAAGAAGAAGTGA+GGG | 0.546939 | 1_1:-14118291 | None:intergenic |
| TGCGAATACAGCTTCATGCA+TGG | 0.551596 | 1_1:+14118465 | Msa0009570:CDS |
| GCTCCAATATTCCAAGTTGT+GGG | 0.553848 | 1_1:-14118519 | None:intergenic |
| ACTAGATAAATCAATTCCAT+AGG | 0.554244 | 1_1:-14118386 | None:intergenic |
| GGGAGATCCATATGCTTACC+AGG | 0.555973 | 1_1:+14118582 | Msa0009570:CDS |
| AACACTGAATCTCGCCAGTA+GGG | 0.556443 | 1_1:-14119329 | None:intergenic |
| TTGTGATAATTGCTACCTCA+AGG | 0.565182 | 1_1:+14119305 | Msa0009570:CDS |
| CAACATATATGTTATTGTTG+GGG | 0.576108 | 1_1:+14118495 | Msa0009570:CDS |
| GCGAATACAGCTTCATGCAT+GGG | 0.576858 | 1_1:+14118466 | Msa0009570:CDS |
| TTCATACATCGATATTCAGA+AGG | 0.584669 | 1_1:+14119236 | Msa0009570:CDS |
| TGGCAAGAATCAGTACGAGT+TGG | 0.592733 | 1_1:+14118141 | Msa0009570:CDS |
| TAACACTGAATCTCGCCAGT+AGG | 0.593843 | 1_1:-14119330 | None:intergenic |
| ACTGGCGAGATTCAGTGTTA+CGG | 0.599762 | 1_1:+14119333 | Msa0009570:CDS |
| TTTCCACAGGAAGAAGAACA+AGG | 0.603365 | 1_1:-14118067 | None:intergenic |
| TCTCGCCAGTAGGGTCCTTG+AGG | 0.613174 | 1_1:-14119320 | None:intergenic |
| AGCATATGGATCTCCCCAGA+AGG | 0.619962 | 1_1:-14118575 | None:intergenic |
| ATCGATATTCAGAAGGCACT+AGG | 0.625875 | 1_1:+14119243 | Msa0009570:CDS |
| GCATAATGAAAATGTAACAA+AGG | 0.626194 | 1_1:-14119377 | None:intergenic |
| AAGTCCACCTAGTAACGTTG+TGG | 0.633982 | 1_1:+14118432 | Msa0009570:CDS |
| ACATGCTTAACACGGCATTG+AGG | 0.658715 | 1_1:-14118541 | None:intergenic |
| TCCATAGGAAAACTCAAACG+TGG | 0.666562 | 1_1:-14118371 | None:intergenic |
| CGTACTGATTCTTGCCACAG+TGG | 0.675535 | 1_1:-14118135 | None:intergenic |
| ATATCCACAACGTTACTAGG+TGG | 0.679995 | 1_1:-14118436 | None:intergenic |
| GTTACTCTCACATCCTTCTG+GGG | 0.682520 | 1_1:+14118562 | Msa0009570:CDS |
| TGAGAGTAACATGCTTAACA+CGG | 0.691720 | 1_1:-14118549 | None:intergenic |
| AAACACGACCCAGACCACTG+TGG | 0.795788 | 1_1:+14118121 | Msa0009570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATGTTTTTTTTTGAA+GGG | - | chr1_1:14118729-14118748 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTTTTTTTTGA+AGG | - | chr1_1:14118730-14118749 | None:intergenic | 10.0% |
| !! | TTTATTTACATTTAAATAGA+AGG | + | chr1_1:14119076-14119095 | Msa0009570:intron | 10.0% |
| !!! | GTAAATATTATTTCTTTTAT+AGG | + | chr1_1:14119207-14119226 | Msa0009570:intron | 10.0% |
| !!! | AAAATATGTTTTTTTTTGAA+GGG | - | chr1_1:14118729-14118748 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTTTTTTTTGA+AGG | - | chr1_1:14118730-14118749 | None:intergenic | 10.0% |
| !! | TTTATTTACATTTAAATAGA+AGG | + | chr1_1:14119076-14119095 | Msa0009570:intron | 10.0% |
| !!! | GTAAATATTATTTCTTTTAT+AGG | + | chr1_1:14119207-14119226 | Msa0009570:intron | 10.0% |
| !!! | GTATGAATTAGTATCTTTTT+GGG | - | chr1_1:14118326-14118345 | None:intergenic | 20.0% |
| !! | ACAACATATATGTTATTGTT+GGG | + | chr1_1:14118494-14118513 | Msa0009570:CDS | 20.0% |
| !! | CAACATATACAAATACATTT+CGG | - | chr1_1:14119160-14119179 | None:intergenic | 20.0% |
| !!! | GTATGAATTAGTATCTTTTT+GGG | - | chr1_1:14118326-14118345 | None:intergenic | 20.0% |
| !! | ACAACATATATGTTATTGTT+GGG | + | chr1_1:14118494-14118513 | Msa0009570:CDS | 20.0% |
| !! | CAACATATACAAATACATTT+CGG | - | chr1_1:14119160-14119179 | None:intergenic | 20.0% |
| ! | AATGTAATCTTAAGTCAAGA+TGG | - | chr1_1:14117899-14117918 | None:intergenic | 25.0% |
| !! | CGTATGAATTAGTATCTTTT+TGG | - | chr1_1:14118327-14118346 | None:intergenic | 25.0% |
| ! | ACTAGATAAATCAATTCCAT+AGG | - | chr1_1:14118389-14118408 | None:intergenic | 25.0% |
| ! | CACAACATATATGTTATTGT+TGG | + | chr1_1:14118493-14118512 | Msa0009570:CDS | 25.0% |
| ! | CAACATATATGTTATTGTTG+GGG | + | chr1_1:14118495-14118514 | Msa0009570:CDS | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | - | chr1_1:14118648-14118667 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | + | chr1_1:14118761-14118780 | Msa0009570:intron | 25.0% |
| !! | ATTCAATTGACTGTTTTACA+TGG | - | chr1_1:14118895-14118914 | None:intergenic | 25.0% |
| !!! | ATTGATTTTGTCATCCAAAA+AGG | - | chr1_1:14119130-14119149 | None:intergenic | 25.0% |
| ! | TTACAGACAAAAAATCTACA+CGG | - | chr1_1:14119191-14119210 | None:intergenic | 25.0% |
| !! | TTTGAAATTTCCTGGATAAA+AGG | + | chr1_1:14119273-14119292 | Msa0009570:CDS | 25.0% |
| ! | ATGTAATCTTAAGTCAAGAT+GGG | - | chr1_1:14117898-14117917 | None:intergenic | 25.0% |
| ! | AATGTAATCTTAAGTCAAGA+TGG | - | chr1_1:14117899-14117918 | None:intergenic | 25.0% |
| !! | CGTATGAATTAGTATCTTTT+TGG | - | chr1_1:14118327-14118346 | None:intergenic | 25.0% |
| ! | ACTAGATAAATCAATTCCAT+AGG | - | chr1_1:14118389-14118408 | None:intergenic | 25.0% |
| ! | CACAACATATATGTTATTGT+TGG | + | chr1_1:14118493-14118512 | Msa0009570:CDS | 25.0% |
| ! | CAACATATATGTTATTGTTG+GGG | + | chr1_1:14118495-14118514 | Msa0009570:CDS | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | - | chr1_1:14118648-14118667 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | + | chr1_1:14118761-14118780 | Msa0009570:intron | 25.0% |
| !! | ATTCAATTGACTGTTTTACA+TGG | - | chr1_1:14118895-14118914 | None:intergenic | 25.0% |
| !!! | ATTGATTTTGTCATCCAAAA+AGG | - | chr1_1:14119130-14119149 | None:intergenic | 25.0% |
| ! | TTACAGACAAAAAATCTACA+CGG | - | chr1_1:14119191-14119210 | None:intergenic | 25.0% |
| !! | TTTGAAATTTCCTGGATAAA+AGG | + | chr1_1:14119273-14119292 | Msa0009570:CDS | 25.0% |
| ! | TATGTTGGAAATTTTTCCAC+AGG | - | chr1_1:14118083-14118102 | None:intergenic | 30.0% |
| ! | ACAGTATTGAAGTTGTATGA+TGG | + | chr1_1:14118181-14118200 | Msa0009570:CDS | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | - | chr1_1:14118261-14118280 | None:intergenic | 30.0% |
| !!! | CTTTTTGGGTAAAATTGTAG+TGG | - | chr1_1:14118312-14118331 | None:intergenic | 30.0% |
| ATCTAGTCCTGTAATTTACA+TGG | + | chr1_1:14118402-14118421 | Msa0009570:CDS | 30.0% | |
| TTGTACCTATAATGTTATCC+TGG | - | chr1_1:14118603-14118622 | None:intergenic | 30.0% | |
| ! | ATTGAGTCATTGGTTATAGA+AGG | - | chr1_1:14118638-14118657 | None:intergenic | 30.0% |
| ACATTTAAATAGAAGGCAAG+CGG | + | chr1_1:14119083-14119102 | Msa0009570:intron | 30.0% | |
| TGTCATCCAAAAAGGTTTAA+CGG | - | chr1_1:14119122-14119141 | None:intergenic | 30.0% | |
| TTCATACATCGATATTCAGA+AGG | + | chr1_1:14119236-14119255 | Msa0009570:CDS | 30.0% | |
| GAAAATGTAACAAAGGACTA+AGG | - | chr1_1:14119373-14119392 | None:intergenic | 30.0% | |
| ! | TATGTTGGAAATTTTTCCAC+AGG | - | chr1_1:14118083-14118102 | None:intergenic | 30.0% |
| ! | ACAGTATTGAAGTTGTATGA+TGG | + | chr1_1:14118181-14118200 | Msa0009570:CDS | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | - | chr1_1:14118261-14118280 | None:intergenic | 30.0% |
| !!! | CTTTTTGGGTAAAATTGTAG+TGG | - | chr1_1:14118312-14118331 | None:intergenic | 30.0% |
| ATCTAGTCCTGTAATTTACA+TGG | + | chr1_1:14118402-14118421 | Msa0009570:CDS | 30.0% | |
| TTGTACCTATAATGTTATCC+TGG | - | chr1_1:14118603-14118622 | None:intergenic | 30.0% | |
| ! | ATTGAGTCATTGGTTATAGA+AGG | - | chr1_1:14118638-14118657 | None:intergenic | 30.0% |
| ACATTTAAATAGAAGGCAAG+CGG | + | chr1_1:14119083-14119102 | Msa0009570:intron | 30.0% | |
| TGTCATCCAAAAAGGTTTAA+CGG | - | chr1_1:14119122-14119141 | None:intergenic | 30.0% | |
| TTCATACATCGATATTCAGA+AGG | + | chr1_1:14119236-14119255 | Msa0009570:CDS | 30.0% | |
| GAAAATGTAACAAAGGACTA+AGG | - | chr1_1:14119373-14119392 | None:intergenic | 30.0% | |
| !! | TTCACTCACAATGCTAGTTT+TGG | - | chr1_1:14117947-14117966 | None:intergenic | 35.0% |
| ACTAGCATTGTGAGTGAAAA+TGG | + | chr1_1:14117949-14117968 | Msa0009570:exon | 35.0% | |
| !! | GTTGTGGATAAGTTTTGTGT+GGG | - | chr1_1:14118048-14118067 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | - | chr1_1:14118262-14118281 | None:intergenic | 35.0% |
| AGTGGTATAAGAAGAAGTGA+GGG | - | chr1_1:14118294-14118313 | None:intergenic | 35.0% | |
| TAGTGGTATAAGAAGAAGTG+AGG | - | chr1_1:14118295-14118314 | None:intergenic | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | - | chr1_1:14118412-14118431 | None:intergenic | 35.0% | |
| TACATATCCACAACGTTACT+AGG | - | chr1_1:14118442-14118461 | None:intergenic | 35.0% | |
| TGAGAGTAACATGCTTAACA+CGG | - | chr1_1:14118552-14118571 | None:intergenic | 35.0% | |
| ATGTTATCCTGGTAAGCATA+TGG | - | chr1_1:14118592-14118611 | None:intergenic | 35.0% | |
| GCTTACCAGGATAACATTAT+AGG | + | chr1_1:14118595-14118614 | Msa0009570:CDS | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | + | chr1_1:14118908-14118927 | Msa0009570:intron | 35.0% | |
| TCATAGTTGTCGTATTCCAT+CGG | - | chr1_1:14118927-14118946 | None:intergenic | 35.0% | |
| GGAATACGACAACTATGATA+TGG | + | chr1_1:14118929-14118948 | Msa0009570:intron | 35.0% | |
| ! | ATTGCACCGTTAAACCTTTT+TGG | + | chr1_1:14119113-14119132 | Msa0009570:intron | 35.0% |
| ! | GCTATGGATTTGAAATTTCC+TGG | + | chr1_1:14119265-14119284 | Msa0009570:CDS | 35.0% |
| TTGTGATAATTGCTACCTCA+AGG | + | chr1_1:14119305-14119324 | Msa0009570:CDS | 35.0% | |
| !! | TTCACTCACAATGCTAGTTT+TGG | - | chr1_1:14117947-14117966 | None:intergenic | 35.0% |
| ACTAGCATTGTGAGTGAAAA+TGG | + | chr1_1:14117949-14117968 | Msa0009570:exon | 35.0% | |
| !! | GTTGTGGATAAGTTTTGTGT+GGG | - | chr1_1:14118048-14118067 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | - | chr1_1:14118262-14118281 | None:intergenic | 35.0% |
| AGTGGTATAAGAAGAAGTGA+GGG | - | chr1_1:14118294-14118313 | None:intergenic | 35.0% | |
| TAGTGGTATAAGAAGAAGTG+AGG | - | chr1_1:14118295-14118314 | None:intergenic | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | - | chr1_1:14118412-14118431 | None:intergenic | 35.0% | |
| TACATATCCACAACGTTACT+AGG | - | chr1_1:14118442-14118461 | None:intergenic | 35.0% | |
| TGAGAGTAACATGCTTAACA+CGG | - | chr1_1:14118552-14118571 | None:intergenic | 35.0% | |
| ATGTTATCCTGGTAAGCATA+TGG | - | chr1_1:14118592-14118611 | None:intergenic | 35.0% | |
| GCTTACCAGGATAACATTAT+AGG | + | chr1_1:14118595-14118614 | Msa0009570:CDS | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | + | chr1_1:14118908-14118927 | Msa0009570:intron | 35.0% | |
| TCATAGTTGTCGTATTCCAT+CGG | - | chr1_1:14118927-14118946 | None:intergenic | 35.0% | |
| GGAATACGACAACTATGATA+TGG | + | chr1_1:14118929-14118948 | Msa0009570:intron | 35.0% | |
| ! | ATTGCACCGTTAAACCTTTT+TGG | + | chr1_1:14119113-14119132 | Msa0009570:intron | 35.0% |
| ! | GCTATGGATTTGAAATTTCC+TGG | + | chr1_1:14119265-14119284 | Msa0009570:CDS | 35.0% |
| TTGTGATAATTGCTACCTCA+AGG | + | chr1_1:14119305-14119324 | Msa0009570:CDS | 35.0% | |
| !! | GTGGTAGAGTACAGTTTTGA+AGG | - | chr1_1:14117925-14117944 | None:intergenic | 40.0% |
| !!! | ACTCACAATGCTAGTTTTGG+TGG | - | chr1_1:14117944-14117963 | None:intergenic | 40.0% |
| TATCACAGCTCTTGCATATC+TGG | - | chr1_1:14118002-14118021 | None:intergenic | 40.0% | |
| !! | GGTTGTGGATAAGTTTTGTG+TGG | - | chr1_1:14118049-14118068 | None:intergenic | 40.0% |
| TTTCCACAGGAAGAAGAACA+AGG | - | chr1_1:14118070-14118089 | None:intergenic | 40.0% | |
| !!! | GTGTTTTAGTCGGAATGGAT+GGG | - | chr1_1:14118107-14118126 | None:intergenic | 40.0% |
| !! | TCCACGTTTGAGTTTTCCTA+TGG | + | chr1_1:14118370-14118389 | Msa0009570:CDS | 40.0% |
| TCCATAGGAAAACTCAAACG+TGG | - | chr1_1:14118374-14118393 | None:intergenic | 40.0% | |
| ATATCCACAACGTTACTAGG+TGG | - | chr1_1:14118439-14118458 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | - | chr1_1:14118522-14118541 | None:intergenic | 40.0% | |
| ATGTTACTCTCACATCCTTC+TGG | + | chr1_1:14118560-14118579 | Msa0009570:CDS | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | + | chr1_1:14118561-14118580 | Msa0009570:CDS | 40.0% | |
| GGAAACAAAAAGTTGACACG+AGG | + | chr1_1:14118950-14118969 | Msa0009570:intron | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | + | chr1_1:14119243-14119262 | Msa0009570:CDS | 40.0% |
| ! | AAGACAAGAGCCTTTTATCC+AGG | - | chr1_1:14119286-14119305 | None:intergenic | 40.0% |
| !! | GTGGTAGAGTACAGTTTTGA+AGG | - | chr1_1:14117925-14117944 | None:intergenic | 40.0% |
| !!! | ACTCACAATGCTAGTTTTGG+TGG | - | chr1_1:14117944-14117963 | None:intergenic | 40.0% |
| TATCACAGCTCTTGCATATC+TGG | - | chr1_1:14118002-14118021 | None:intergenic | 40.0% | |
| !! | GGTTGTGGATAAGTTTTGTG+TGG | - | chr1_1:14118049-14118068 | None:intergenic | 40.0% |
| TTTCCACAGGAAGAAGAACA+AGG | - | chr1_1:14118070-14118089 | None:intergenic | 40.0% | |
| !!! | GTGTTTTAGTCGGAATGGAT+GGG | - | chr1_1:14118107-14118126 | None:intergenic | 40.0% |
| !! | TCCACGTTTGAGTTTTCCTA+TGG | + | chr1_1:14118370-14118389 | Msa0009570:CDS | 40.0% |
| TCCATAGGAAAACTCAAACG+TGG | - | chr1_1:14118374-14118393 | None:intergenic | 40.0% | |
| ATATCCACAACGTTACTAGG+TGG | - | chr1_1:14118439-14118458 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | - | chr1_1:14118522-14118541 | None:intergenic | 40.0% | |
| ATGTTACTCTCACATCCTTC+TGG | + | chr1_1:14118560-14118579 | Msa0009570:CDS | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | + | chr1_1:14118561-14118580 | Msa0009570:CDS | 40.0% | |
| GGAAACAAAAAGTTGACACG+AGG | + | chr1_1:14118950-14118969 | Msa0009570:intron | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | + | chr1_1:14119243-14119262 | Msa0009570:CDS | 40.0% |
| ! | AAGACAAGAGCCTTTTATCC+AGG | - | chr1_1:14119286-14119305 | None:intergenic | 40.0% |
| ATGGTTTCAACCTCCAACGT+TGG | + | chr1_1:14117968-14117987 | Msa0009570:CDS | 45.0% | |
| !!! | TCTGGCTTTTTCTCCAACGT+TGG | - | chr1_1:14117984-14118003 | None:intergenic | 45.0% |
| CAGGAAGAAGAACAAGGTTG+TGG | - | chr1_1:14118064-14118083 | None:intergenic | 45.0% | |
| CAACCTTGTTCTTCTTCCTG+TGG | + | chr1_1:14118064-14118083 | Msa0009570:CDS | 45.0% | |
| !! | TCGGAATGGATGGGTTATGT+TGG | - | chr1_1:14118098-14118117 | None:intergenic | 45.0% |
| !!! | CGTGTTTTAGTCGGAATGGA+TGG | - | chr1_1:14118108-14118127 | None:intergenic | 45.0% |
| TGGCAAGAATCAGTACGAGT+TGG | + | chr1_1:14118141-14118160 | Msa0009570:CDS | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | - | chr1_1:14118287-14118306 | None:intergenic | 45.0% | |
| AAGTCCACCTAGTAACGTTG+TGG | + | chr1_1:14118432-14118451 | Msa0009570:CDS | 45.0% | |
| TGCGAATACAGCTTCATGCA+TGG | + | chr1_1:14118465-14118484 | Msa0009570:CDS | 45.0% | |
| GCGAATACAGCTTCATGCAT+GGG | + | chr1_1:14118466-14118485 | Msa0009570:CDS | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | + | chr1_1:14118516-14118535 | Msa0009570:CDS | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | - | chr1_1:14118523-14118542 | None:intergenic | 45.0% | |
| ACATGCTTAACACGGCATTG+AGG | - | chr1_1:14118544-14118563 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | + | chr1_1:14118562-14118581 | Msa0009570:CDS | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | + | chr1_1:14119249-14119268 | Msa0009570:CDS | 45.0% |
| AACACTGAATCTCGCCAGTA+GGG | - | chr1_1:14119332-14119351 | None:intergenic | 45.0% | |
| TAACACTGAATCTCGCCAGT+AGG | - | chr1_1:14119333-14119352 | None:intergenic | 45.0% | |
| ACTGGCGAGATTCAGTGTTA+CGG | + | chr1_1:14119333-14119352 | Msa0009570:CDS | 45.0% | |
| ATGGTTTCAACCTCCAACGT+TGG | + | chr1_1:14117968-14117987 | Msa0009570:CDS | 45.0% | |
| !!! | TCTGGCTTTTTCTCCAACGT+TGG | - | chr1_1:14117984-14118003 | None:intergenic | 45.0% |
| CAGGAAGAAGAACAAGGTTG+TGG | - | chr1_1:14118064-14118083 | None:intergenic | 45.0% | |
| CAACCTTGTTCTTCTTCCTG+TGG | + | chr1_1:14118064-14118083 | Msa0009570:CDS | 45.0% | |
| !! | TCGGAATGGATGGGTTATGT+TGG | - | chr1_1:14118098-14118117 | None:intergenic | 45.0% |
| !!! | CGTGTTTTAGTCGGAATGGA+TGG | - | chr1_1:14118108-14118127 | None:intergenic | 45.0% |
| TGGCAAGAATCAGTACGAGT+TGG | + | chr1_1:14118141-14118160 | Msa0009570:CDS | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | - | chr1_1:14118287-14118306 | None:intergenic | 45.0% | |
| AAGTCCACCTAGTAACGTTG+TGG | + | chr1_1:14118432-14118451 | Msa0009570:CDS | 45.0% | |
| TGCGAATACAGCTTCATGCA+TGG | + | chr1_1:14118465-14118484 | Msa0009570:CDS | 45.0% | |
| GCGAATACAGCTTCATGCAT+GGG | + | chr1_1:14118466-14118485 | Msa0009570:CDS | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | + | chr1_1:14118516-14118535 | Msa0009570:CDS | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | - | chr1_1:14118523-14118542 | None:intergenic | 45.0% | |
| ACATGCTTAACACGGCATTG+AGG | - | chr1_1:14118544-14118563 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | + | chr1_1:14118562-14118581 | Msa0009570:CDS | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | + | chr1_1:14119249-14119268 | Msa0009570:CDS | 45.0% |
| AACACTGAATCTCGCCAGTA+GGG | - | chr1_1:14119332-14119351 | None:intergenic | 45.0% | |
| TAACACTGAATCTCGCCAGT+AGG | - | chr1_1:14119333-14119352 | None:intergenic | 45.0% | |
| ACTGGCGAGATTCAGTGTTA+CGG | + | chr1_1:14119333-14119352 | Msa0009570:CDS | 45.0% | |
| !! | GGCTTTTTCTCCAACGTTGG+AGG | - | chr1_1:14117981-14118000 | None:intergenic | 50.0% |
| !!! | GGGTCGTGTTTTAGTCGGAA+TGG | - | chr1_1:14118112-14118131 | None:intergenic | 50.0% |
| !!! | GGTCTGGGTCGTGTTTTAGT+CGG | - | chr1_1:14118117-14118136 | None:intergenic | 50.0% |
| GATTCTTGCCACAGTGGTCT+GGG | - | chr1_1:14118132-14118151 | None:intergenic | 50.0% | |
| TGATTCTTGCCACAGTGGTC+TGG | - | chr1_1:14118133-14118152 | None:intergenic | 50.0% | |
| !! | CGTACTGATTCTTGCCACAG+TGG | - | chr1_1:14118138-14118157 | None:intergenic | 50.0% |
| GGGAGAGAGGAGCAATTGTT+GGG | - | chr1_1:14118274-14118293 | None:intergenic | 50.0% | |
| AGGGAGAGAGGAGCAATTGT+TGG | - | chr1_1:14118275-14118294 | None:intergenic | 50.0% | |
| ATTGTTGGGGACCCACAACT+TGG | + | chr1_1:14118508-14118527 | Msa0009570:CDS | 50.0% | |
| AGCATATGGATCTCCCCAGA+AGG | - | chr1_1:14118578-14118597 | None:intergenic | 50.0% | |
| GGGAGATCCATATGCTTACC+AGG | + | chr1_1:14118582-14118601 | Msa0009570:CDS | 50.0% | |
| !! | GGCTTTTTCTCCAACGTTGG+AGG | - | chr1_1:14117981-14118000 | None:intergenic | 50.0% |
| !!! | GGGTCGTGTTTTAGTCGGAA+TGG | - | chr1_1:14118112-14118131 | None:intergenic | 50.0% |
| !!! | GGTCTGGGTCGTGTTTTAGT+CGG | - | chr1_1:14118117-14118136 | None:intergenic | 50.0% |
| GATTCTTGCCACAGTGGTCT+GGG | - | chr1_1:14118132-14118151 | None:intergenic | 50.0% | |
| TGATTCTTGCCACAGTGGTC+TGG | - | chr1_1:14118133-14118152 | None:intergenic | 50.0% | |
| !! | CGTACTGATTCTTGCCACAG+TGG | - | chr1_1:14118138-14118157 | None:intergenic | 50.0% |
| GGGAGAGAGGAGCAATTGTT+GGG | - | chr1_1:14118274-14118293 | None:intergenic | 50.0% | |
| AGGGAGAGAGGAGCAATTGT+TGG | - | chr1_1:14118275-14118294 | None:intergenic | 50.0% | |
| ATTGTTGGGGACCCACAACT+TGG | + | chr1_1:14118508-14118527 | Msa0009570:CDS | 50.0% | |
| AGCATATGGATCTCCCCAGA+AGG | - | chr1_1:14118578-14118597 | None:intergenic | 50.0% | |
| GGGAGATCCATATGCTTACC+AGG | + | chr1_1:14118582-14118601 | Msa0009570:CDS | 50.0% | |
| AAACACGACCCAGACCACTG+TGG | + | chr1_1:14118121-14118140 | Msa0009570:CDS | 55.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | + | chr1_1:14119315-14119334 | Msa0009570:CDS | 55.0% | |
| AAACACGACCCAGACCACTG+TGG | + | chr1_1:14118121-14118140 | Msa0009570:CDS | 55.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | + | chr1_1:14119315-14119334 | Msa0009570:CDS | 55.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | - | chr1_1:14119323-14119342 | None:intergenic | 60.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | - | chr1_1:14119323-14119342 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14117896 | 14119392 | 14117896 | ID=Msa0009570;Name=Msa0009570 |
| chr1_1 | mRNA | 14117896 | 14119392 | 14117896 | ID=Msa0009570-mRNA-1;Parent=Msa0009570;Name=Msa0009570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=72|1|0.5|1|1|0.5|2|0|271 |
| chr1_1 | exon | 14117896 | 14118616 | 14117896 | ID=Msa0009570-mRNA-1:exon:5279;Parent=Msa0009570-mRNA-1 |
| chr1_1 | exon | 14119229 | 14119392 | 14119229 | ID=Msa0009570-mRNA-1:exon:5280;Parent=Msa0009570-mRNA-1 |
| chr1_1 | five_prime_UTR | 14117896 | 14117967 | 14117896 | ID=Msa0009570-mRNA-1:five_prime_utr;Parent=Msa0009570-mRNA-1 |
| chr1_1 | CDS | 14117968 | 14118616 | 14117968 | ID=Msa0009570-mRNA-1:cds;Parent=Msa0009570-mRNA-1 |
| chr1_1 | CDS | 14119229 | 14119392 | 14119229 | ID=Msa0009570-mRNA-1:cds;Parent=Msa0009570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
