Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453350 | A0A072VQK0 | 76.838 | 272 | 58 | 4 | 1 | 270 | 1 | 269 | 1.48e-140 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009570 | Msa1453350 | 0.855669 | 5.404005e-62 | -8.615850e-47 |
| Msa0020330 | Msa1453350 | 0.819996 | 8.661931e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453350 | MtrunA17_Chr1g0158631 | 77.323 | 269 | 49 | 4 | 1 | 260 | 1 | 266 | 1.26e-137 | 404 |
| Msa1453350 | MtrunA17_Chr1g0158661 | 77.099 | 262 | 55 | 4 | 1 | 260 | 1 | 259 | 2.58e-136 | 400 |
| Msa1453350 | MtrunA17_Chr1g0157881 | 34.483 | 319 | 142 | 11 | 3 | 259 | 14 | 327 | 2.52e-45 | 162 |
| Msa1453350 | MtrunA17_Chr1g0158061 | 41.339 | 254 | 108 | 10 | 37 | 268 | 33 | 267 | 2.13e-44 | 152 |
| Msa1453350 | MtrunA17_Chr1g0157791 | 39.007 | 282 | 127 | 12 | 13 | 263 | 3 | 270 | 7.21e-42 | 152 |
| Msa1453350 | MtrunA17_Chr1g0157861 | 37.500 | 272 | 125 | 12 | 28 | 259 | 36 | 302 | 8.80e-42 | 152 |
| Msa1453350 | MtrunA17_Chr1g0157911 | 41.494 | 241 | 111 | 10 | 37 | 259 | 40 | 268 | 1.89e-41 | 151 |
| Msa1453350 | MtrunA17_Chr3g0088331 | 40.909 | 242 | 115 | 13 | 37 | 266 | 44 | 269 | 1.98e-41 | 144 |
| Msa1453350 | MtrunA17_Chr1g0158411 | 40.249 | 241 | 121 | 8 | 36 | 266 | 51 | 278 | 6.03e-41 | 150 |
| Msa1453350 | MtrunA17_Chr1g0158731 | 41.964 | 224 | 103 | 7 | 37 | 251 | 41 | 246 | 7.58e-41 | 143 |
| Msa1453350 | MtrunA17_Chr1g0158151 | 40.000 | 255 | 121 | 10 | 37 | 272 | 34 | 275 | 1.25e-39 | 146 |
| Msa1453350 | MtrunA17_Chr1g0158041 | 41.245 | 257 | 108 | 12 | 30 | 259 | 26 | 266 | 1.41e-39 | 145 |
| Msa1453350 | MtrunA17_Chr1g0158191 | 39.051 | 274 | 135 | 12 | 17 | 267 | 4 | 268 | 1.59e-38 | 143 |
| Msa1453350 | MtrunA17_Chr1g0157961 | 43.519 | 216 | 103 | 7 | 37 | 243 | 41 | 246 | 1.96e-38 | 136 |
| Msa1453350 | MtrunA17_Chr1g0157991 | 43.111 | 225 | 95 | 8 | 37 | 243 | 36 | 245 | 2.95e-36 | 136 |
| Msa1453350 | MtrunA17_Chr1g0158331 | 37.143 | 245 | 122 | 10 | 37 | 259 | 51 | 285 | 5.80e-36 | 131 |
| Msa1453350 | MtrunA17_Chr6g0467711 | 36.431 | 269 | 117 | 12 | 23 | 260 | 22 | 267 | 2.24e-35 | 134 |
| Msa1453350 | MtrunA17_Chr1g0158461 | 34.021 | 291 | 134 | 11 | 12 | 259 | 18 | 293 | 7.77e-35 | 127 |
| Msa1453350 | MtrunA17_Chr1g0158761 | 37.004 | 227 | 113 | 8 | 17 | 238 | 10 | 211 | 3.54e-34 | 130 |
| Msa1453350 | MtrunA17_Chr1g0158571 | 66.667 | 99 | 29 | 3 | 167 | 264 | 2 | 97 | 1.11e-33 | 128 |
| Msa1453350 | MtrunA17_Chr1g0158121 | 62.651 | 83 | 30 | 1 | 37 | 119 | 37 | 118 | 4.97e-28 | 104 |
| Msa1453350 | MtrunA17_Chr1g0158541 | 31.599 | 269 | 142 | 13 | 17 | 259 | 18 | 270 | 1.48e-27 | 111 |
| Msa1453350 | MtrunA17_Chr1g0158301 | 31.461 | 267 | 141 | 14 | 17 | 259 | 20 | 268 | 2.84e-26 | 107 |
| Msa1453350 | MtrunA17_Chr1g0160761 | 32.520 | 246 | 141 | 10 | 17 | 249 | 7 | 240 | 8.23e-24 | 100 |
| Msa1453350 | MtrunA17_Chr1g0160701 | 34.234 | 222 | 116 | 10 | 35 | 243 | 44 | 248 | 7.90e-23 | 97.8 |
| Msa1453350 | MtrunA17_Chr1g0160661 | 31.599 | 269 | 150 | 12 | 1 | 259 | 21 | 265 | 6.25e-21 | 92.0 |
| Msa1453350 | MtrunA17_Chr1g0160721 | 33.761 | 234 | 127 | 11 | 33 | 259 | 38 | 250 | 2.57e-19 | 87.4 |
| Msa1453350 | MtrunA17_Chr1g0160711 | 31.278 | 227 | 124 | 9 | 31 | 243 | 22 | 230 | 1.19e-18 | 85.5 |
| Msa1453350 | MtrunA17_Chr1g0160561 | 31.660 | 259 | 145 | 12 | 1 | 243 | 1 | 243 | 3.11e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAATTTCCTGGATAAA+AGG | 0.188142 | tig0034642:+28352 | Msa1453350:CDS |
| ATGTTATTGTGGTAAGTATA+TGG | 0.216101 | tig0034642:-26179 | None:intergenic |
| CAATTGTTGGGTTGAATGTT+TGG | 0.270020 | tig0034642:-25846 | None:intergenic |
| ACTTACCACAATAACATTAA+AGG | 0.272182 | tig0034642:+26185 | Msa1453350:CDS |
| TATCACACATCTTGCATAAC+TGG | 0.290306 | tig0034642:-25583 | None:intergenic |
| GCTATGGATTTGAAATTTCC+TGG | 0.305840 | tig0034642:+28344 | Msa1453350:CDS |
| ACTAGCACCGTAAGTGAAAA+TGG | 0.312018 | tig0034642:+25533 | Msa1453350:exon |
| TGTTGCGCGCACAGTGGTTT+GGG | 0.346750 | tig0034642:-25713 | None:intergenic |
| ACAACATATATGTAATTGTT+GGG | 0.350079 | tig0034642:+26084 | Msa1453350:CDS |
| GGACCCACAACTTGGAATAT+TGG | 0.351925 | tig0034642:+26106 | Msa1453350:CDS |
| GTACACTCCATGTAAATTAC+AGG | 0.360082 | tig0034642:-25999 | None:intergenic |
| AGGGAGAGAGGAGCAATTGT+TGG | 0.363569 | tig0034642:-25859 | None:intergenic |
| ATGTTACTCTCACATCCTTC+TGG | 0.370866 | tig0034642:+26150 | Msa1453350:CDS |
| TTGTTGCGCGCACAGTGGTT+TGG | 0.376288 | tig0034642:-25714 | None:intergenic |
| AATTGTTGGGTTGAATGTTT+GGG | 0.419800 | tig0034642:-25845 | None:intergenic |
| CAACCTTGTTCTTCTTCTTG+TGG | 0.428624 | tig0034642:+25648 | Msa1453350:CDS |
| TGTTACTCTCACATCCTTCT+GGG | 0.433436 | tig0034642:+26151 | Msa1453350:CDS |
| TAAGAAGAAGTGAGGGAGAG+AGG | 0.444522 | tig0034642:-25871 | None:intergenic |
| CACAACATATATGTAATTGT+TGG | 0.460897 | tig0034642:+26083 | Msa1453350:CDS |
| ATCTAGTCCTGTAATTTACA+TGG | 0.474394 | tig0034642:+25992 | Msa1453350:CDS |
| GGGAGAGAGGAGCAATTGTT+GGG | 0.477982 | tig0034642:-25858 | None:intergenic |
| GGCTCCAATATTCCAAGTTG+TGG | 0.482055 | tig0034642:-26110 | None:intergenic |
| ACAGTATTGAAGTTGTATGA+TGG | 0.489285 | tig0034642:+25768 | Msa1453350:CDS |
| ATTCAGAAGGCACTAGGCTA+TGG | 0.492318 | tig0034642:+28328 | Msa1453350:CDS |
| TACTTATCCACAGCGTTACT+AGG | 0.493264 | tig0034642:-26029 | None:intergenic |
| TAGTGGTATAAGAAGAAGTG+AGG | 0.493961 | tig0034642:-25879 | None:intergenic |
| TCGGAATGGATGAGTTATGT+TGG | 0.500099 | tig0034642:-25679 | None:intergenic |
| TTGTACCTTTAATGTTATTG+TGG | 0.505162 | tig0034642:-26190 | None:intergenic |
| ATTGTTGGGGACCCACAACT+TGG | 0.505521 | tig0034642:+26098 | Msa1453350:CDS |
| GAAAATGTAACAAAGGACTA+AGG | 0.532231 | tig0034642:-28449 | None:intergenic |
| TGCTACCTCAAGGACCCTAC+TGG | 0.537359 | tig0034642:+28394 | Msa1453350:CDS |
| AGTGGTATAAGAAGAAGTGA+GGG | 0.546939 | tig0034642:-25878 | None:intergenic |
| TACGAATACAGCTTCATGCA+TGG | 0.551598 | tig0034642:+26055 | Msa1453350:CDS |
| GCTCCAATATTCCAAGTTGT+GGG | 0.553848 | tig0034642:-26109 | None:intergenic |
| ACTAGATAAATCAATTCCAT+AGG | 0.554244 | tig0034642:-25976 | None:intergenic |
| AACACTGAATCTCGCCAGTA+GGG | 0.556443 | tig0034642:-28408 | None:intergenic |
| TTGTGATAATTGCTACCTCA+AGG | 0.565182 | tig0034642:+28384 | Msa1453350:CDS |
| ACTGGCGAGATTCAGTGTTA+CGG | 0.582835 | tig0034642:+28412 | Msa1453350:CDS |
| TTCATACATCGATATTCAGA+AGG | 0.584669 | tig0034642:+28315 | Msa1453350:CDS |
| TAACACTGAATCTCGCCAGT+AGG | 0.593843 | tig0034642:-28409 | None:intergenic |
| ACGAATACAGCTTCATGCAT+GGG | 0.594756 | tig0034642:+26056 | Msa1453350:CDS |
| ACTTATTGTTGCGCGCACAG+TGG | 0.607221 | tig0034642:-25719 | None:intergenic |
| TCTCGCCAGTAGGGTCCTTG+AGG | 0.613174 | tig0034642:-28399 | None:intergenic |
| ATCGATATTCAGAAGGCACT+AGG | 0.625875 | tig0034642:+28322 | Msa1453350:CDS |
| GAAGAATGAAAATGTAACAA+AGG | 0.626548 | tig0034642:-28456 | None:intergenic |
| CAACATATATGTAATTGTTG+GGG | 0.630534 | tig0034642:+26085 | Msa1453350:CDS |
| TTTCCACAAGAAGAAGAACA+AGG | 0.631688 | tig0034642:-25651 | None:intergenic |
| AGTATATGGATCTCCCCAGA+AGG | 0.640343 | tig0034642:-26165 | None:intergenic |
| GCGCAACAATAAGTACGAGT+TGG | 0.647966 | tig0034642:+25728 | Msa1453350:CDS |
| TCCATAGGAAAACTCAGACG+TGG | 0.656486 | tig0034642:-25961 | None:intergenic |
| ACATGCTTAACACGGCATTG+AGG | 0.658715 | tig0034642:-26131 | None:intergenic |
| TTATCCACAGCGTTACTAGG+TGG | 0.678496 | tig0034642:-26026 | None:intergenic |
| GTTACTCTCACATCCTTCTG+GGG | 0.682520 | tig0034642:+26152 | Msa1453350:CDS |
| TGAGAGTAACATGCTTAACA+CGG | 0.691720 | tig0034642:-26139 | None:intergenic |
| AAGTCCACCTAGTAACGCTG+TGG | 0.692399 | tig0034642:+26022 | Msa1453350:CDS |
| TGGAATTCGATCGAAGTAAG+CGG | 0.713259 | tig0034642:-25941 | None:intergenic |
| GGCGAGATTCAGTGTTACGG+CGG | 0.719790 | tig0034642:+28415 | Msa1453350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATAAAATCAATTTTG+TGG | - | tig0034642:26403-26422 | None:intergenic | 10.0% |
| !! | ATTAGTTATATTATAATGAA+GGG | - | tig0034642:26975-26994 | None:intergenic | 10.0% |
| !! | TATTAGTTATATTATAATGA+AGG | - | tig0034642:26976-26995 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTTTTGTTTAAA+CGG | - | tig0034642:27144-27163 | None:intergenic | 10.0% |
| !! | TCTTTATAAAATATGAAAAA+AGG | - | tig0034642:27819-27838 | None:intergenic | 10.0% |
| !!! | GTAAATATTATTTCTTTTAT+AGG | + | tig0034642:28286-28305 | Msa1453350:intron | 10.0% |
| !!! | CATATTAAAAAATTTGCTTT+AGG | + | tig0034642:26454-26473 | Msa1453350:intron | 15.0% |
| !!! | GATTTTAGAAAAAATAGTAA+GGG | - | tig0034642:26744-26763 | None:intergenic | 15.0% |
| !!! | AGATTTTAGAAAAAATAGTA+AGG | - | tig0034642:26745-26764 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTATATTGCAC+TGG | - | tig0034642:27097-27116 | None:intergenic | 15.0% |
| !! | GCACATTTAAAAAAAAATAT+TGG | + | tig0034642:27196-27215 | Msa1453350:intron | 15.0% |
| !!! | AAATGTGATTATTTTAACTA+GGG | - | tig0034642:27339-27358 | None:intergenic | 15.0% |
| !!! | AAAATGTGATTATTTTAACT+AGG | - | tig0034642:27340-27359 | None:intergenic | 15.0% |
| !! | AATATAAAGAGTAAAAGATT+TGG | - | tig0034642:27419-27438 | None:intergenic | 15.0% |
| !! | AATACTTCAAAAAAAAACAT+AGG | - | tig0034642:27772-27791 | None:intergenic | 15.0% |
| !!! | TGGAATGAATATTGTTTTAA+AGG | - | tig0034642:25500-25519 | None:intergenic | 20.0% |
| !!! | TGAATTAGTAGTATCTTTTT+GGG | - | tig0034642:25913-25932 | None:intergenic | 20.0% |
| !!! | ATGAATTAGTAGTATCTTTT+TGG | - | tig0034642:25914-25933 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | + | tig0034642:26084-26103 | Msa1453350:CDS | 20.0% |
| !! | ATACTTATAACCAAATATTG+AGG | - | tig0034642:26288-26307 | None:intergenic | 20.0% |
| !!! | ATTAGCTATAAGCTTTTTTT+GGG | - | tig0034642:26554-26573 | None:intergenic | 20.0% |
| !!! | TATTAGCTATAAGCTTTTTT+TGG | - | tig0034642:26555-26574 | None:intergenic | 20.0% |
| !! | TACCCTTTATAATTCATTAT+AGG | + | tig0034642:26770-26789 | Msa1453350:intron | 20.0% |
| !! | ACCCTTTATAATTCATTATA+GGG | + | tig0034642:26771-26790 | Msa1453350:intron | 20.0% |
| !! | TCCCTATAATGAATTATAAA+GGG | - | tig0034642:26775-26794 | None:intergenic | 20.0% |
| !! | TTCCCTATAATGAATTATAA+AGG | - | tig0034642:26776-26795 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTTAAACGGA+AGG | - | tig0034642:27140-27159 | None:intergenic | 20.0% |
| !!! | ACTTAGATTGTTTTTATGAA+GGG | + | tig0034642:27243-27262 | Msa1453350:intron | 20.0% |
| !!! | TTACTCTTTATATTTTTTCC+TGG | + | tig0034642:27425-27444 | Msa1453350:intron | 20.0% |
| !!! | TACTCTTTATATTTTTTCCT+GGG | + | tig0034642:27426-27445 | Msa1453350:intron | 20.0% |
| !! | TAAATGTAAAATGACGTAAA+AGG | - | tig0034642:27563-27582 | None:intergenic | 20.0% |
| !! | ACAAACAAAAAAAATCTACA+CGG | - | tig0034642:28268-28287 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAAGGAGTTTACA+TGG | - | tig0034642:25489-25508 | None:intergenic | 25.0% |
| ! | ACTAGATAAATCAATTCCAT+AGG | - | tig0034642:25979-25998 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | + | tig0034642:26083-26102 | Msa1453350:CDS | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | + | tig0034642:26085-26104 | Msa1453350:CDS | 25.0% |
| ! | ATGTTATTGTGGTAAGTATA+TGG | - | tig0034642:26182-26201 | None:intergenic | 25.0% |
| ! | ACTTACCACAATAACATTAA+AGG | + | tig0034642:26185-26204 | Msa1453350:CDS | 25.0% |
| ! | TTGTACCTTTAATGTTATTG+TGG | - | tig0034642:26193-26212 | None:intergenic | 25.0% |
| ! | TGCTTAACTGATTATCAAAA+AGG | + | tig0034642:26340-26359 | Msa1453350:intron | 25.0% |
| ! | TTGACAAAAAAAGATCTGTT+TGG | + | tig0034642:26596-26615 | Msa1453350:intron | 25.0% |
| ! | TGAAATAAGCTATAAGTTCA+TGG | - | tig0034642:26635-26654 | None:intergenic | 25.0% |
| ! | TTTCTTAACTTATGCTTCAA+GGG | - | tig0034642:26812-26831 | None:intergenic | 25.0% |
| !! | TTTTCTTAACTTATGCTTCA+AGG | - | tig0034642:26813-26832 | None:intergenic | 25.0% |
| !! | CAAATGTAGAAGTTTTTACT+TGG | + | tig0034642:26833-26852 | Msa1453350:intron | 25.0% |
| ! | AACAACGTAATTATAAGGTA+AGG | - | tig0034642:27027-27046 | None:intergenic | 25.0% |
| ! | GAACAAACAACGTAATTATA+AGG | - | tig0034642:27032-27051 | None:intergenic | 25.0% |
| !!! | GACTTAGATTGTTTTTATGA+AGG | + | tig0034642:27242-27261 | Msa1453350:intron | 25.0% |
| !!! | AGTATTGACTATATCACTAT+TGG | + | tig0034642:27786-27805 | Msa1453350:intron | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | + | tig0034642:27844-27863 | Msa1453350:intron | 25.0% |
| !! | ATTCAATTGACTGTTTTACA+TGG | - | tig0034642:27969-27988 | None:intergenic | 25.0% |
| !! | TTTGAAATTTCCTGGATAAA+AGG | + | tig0034642:28352-28371 | Msa1453350:CDS | 25.0% |
| ! | ACAGTATTGAAGTTGTATGA+TGG | + | tig0034642:25768-25787 | Msa1453350:CDS | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | - | tig0034642:25848-25867 | None:intergenic | 30.0% |
| !!! | CTTTTTGGGTAAAATTGTAG+TGG | - | tig0034642:25899-25918 | None:intergenic | 30.0% |
| ATCTAGTCCTGTAATTTACA+TGG | + | tig0034642:25992-26011 | Msa1453350:CDS | 30.0% | |
| AAATAGTCAAATCGAGTCAT+TGG | - | tig0034642:26508-26527 | None:intergenic | 30.0% | |
| ! | TCGATTTGACTATTTCACTA+TGG | + | tig0034642:26513-26532 | Msa1453350:intron | 30.0% |
| CGATTTGACTATTTCACTAT+GGG | + | tig0034642:26514-26533 | Msa1453350:intron | 30.0% | |
| AAAAATAGTAAGGGCAAAAG+TGG | - | tig0034642:26735-26754 | None:intergenic | 30.0% | |
| !! | ACATGTTAAGGAGCTTTAAA+TGG | - | tig0034642:26927-26946 | None:intergenic | 30.0% |
| ATTGCATTCTGTTGTATTCT+CGG | + | tig0034642:27053-27072 | Msa1453350:intron | 30.0% | |
| !!! | TTGTTTTTATGAAGGGTGTT+AGG | + | tig0034642:27250-27269 | Msa1453350:intron | 30.0% |
| !! | AATATAAAGAGTATCTACCC+AGG | - | tig0034642:27446-27465 | None:intergenic | 30.0% |
| ! | GAAGTGTTTGGTAAAATTAG+CGG | - | tig0034642:27599-27618 | None:intergenic | 30.0% |
| GCTCTGTTTGGTAAAAATAA+CGG | - | tig0034642:27750-27769 | None:intergenic | 30.0% | |
| AAAAAAACATAGGCTCTGTT+TGG | - | tig0034642:27762-27781 | None:intergenic | 30.0% | |
| ATTGACTATATCACTATTGG+TGG | + | tig0034642:27789-27808 | Msa1453350:intron | 30.0% | |
| TTCATACATCGATATTCAGA+AGG | + | tig0034642:28315-28334 | Msa1453350:CDS | 30.0% | |
| GAAAATGTAACAAAGGACTA+AGG | - | tig0034642:28452-28471 | None:intergenic | 30.0% | |
| !!! | TGCTAGTTTTGTTTTGGTGA+TGG | - | tig0034642:25520-25539 | None:intergenic | 35.0% |
| !!! | TTACGGTGCTAGTTTTGTTT+TGG | - | tig0034642:25526-25545 | None:intergenic | 35.0% |
| ! | GCTGAAACCATTTTCACTTA+CGG | - | tig0034642:25543-25562 | None:intergenic | 35.0% |
| !!! | ACTGGTTTTTCCTCCAAAAA+TGG | - | tig0034642:25568-25587 | None:intergenic | 35.0% |
| TATCACACATCTTGCATAAC+TGG | - | tig0034642:25586-25605 | None:intergenic | 35.0% | |
| !! | GGTTGTGAATAAGTTTTGTG+TGG | - | tig0034642:25633-25652 | None:intergenic | 35.0% |
| TTTCCACAAGAAGAAGAACA+AGG | - | tig0034642:25654-25673 | None:intergenic | 35.0% | |
| !! | CAATTGTTGGGTTGAATGTT+TGG | - | tig0034642:25849-25868 | None:intergenic | 35.0% |
| AGTGGTATAAGAAGAAGTGA+GGG | - | tig0034642:25881-25900 | None:intergenic | 35.0% | |
| TAGTGGTATAAGAAGAAGTG+AGG | - | tig0034642:25882-25901 | None:intergenic | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | - | tig0034642:26002-26021 | None:intergenic | 35.0% | |
| TGAGAGTAACATGCTTAACA+CGG | - | tig0034642:26142-26161 | None:intergenic | 35.0% | |
| ! | GGATTTTAGGCCTCAATATT+TGG | + | tig0034642:26275-26294 | Msa1453350:intron | 35.0% |
| ! | TTTGCTTTAGGCCTCTTAAT+CGG | + | tig0034642:26466-26485 | Msa1453350:intron | 35.0% |
| TAAGGCTGTGGATGTTTATA+AGG | - | tig0034642:27009-27028 | None:intergenic | 35.0% | |
| GTAATTATAAGGTAAGGCTG+TGG | - | tig0034642:27021-27040 | None:intergenic | 35.0% | |
| ! | GATAAGCTAGTTGAAGTGTT+TGG | - | tig0034642:27611-27630 | None:intergenic | 35.0% |
| ! | GCTATGGATTTGAAATTTCC+TGG | + | tig0034642:28344-28363 | Msa1453350:CDS | 35.0% |
| TTGTGATAATTGCTACCTCA+AGG | + | tig0034642:28384-28403 | Msa1453350:CDS | 35.0% | |
| ACTAGCACCGTAAGTGAAAA+TGG | + | tig0034642:25533-25552 | Msa1453350:exon | 40.0% | |
| ! | ATGGTTTCAGCCTCCATTTT+TGG | + | tig0034642:25552-25571 | Msa1453350:CDS | 40.0% |
| ! | GGTTTTTCCTCCAAAAATGG+AGG | - | tig0034642:25565-25584 | None:intergenic | 40.0% |
| CAACCTTGTTCTTCTTCTTG+TGG | + | tig0034642:25648-25667 | Msa1453350:CDS | 40.0% | |
| TCGGAATGGATGAGTTATGT+TGG | - | tig0034642:25682-25701 | None:intergenic | 40.0% | |
| TGGAATTCGATCGAAGTAAG+CGG | - | tig0034642:25944-25963 | None:intergenic | 40.0% | |
| TACTTATCCACAGCGTTACT+AGG | - | tig0034642:26032-26051 | None:intergenic | 40.0% | |
| TACGAATACAGCTTCATGCA+TGG | + | tig0034642:26055-26074 | Msa1453350:CDS | 40.0% | |
| ACGAATACAGCTTCATGCAT+GGG | + | tig0034642:26056-26075 | Msa1453350:CDS | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | - | tig0034642:26112-26131 | None:intergenic | 40.0% | |
| ATGTTACTCTCACATCCTTC+TGG | + | tig0034642:26150-26169 | Msa1453350:CDS | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | + | tig0034642:26151-26170 | Msa1453350:CDS | 40.0% | |
| TTCCTTCTATAACCGATGCA+TGG | + | tig0034642:26223-26242 | Msa1453350:intron | 40.0% | |
| TTTAGGCCTCTTAATCGGTT+AGG | + | tig0034642:26471-26490 | Msa1453350:intron | 40.0% | |
| !! | CAAATCGAGTCATTGGTTCA+GGG | - | tig0034642:26501-26520 | None:intergenic | 40.0% |
| !! | TCAAATCGAGTCATTGGTTC+AGG | - | tig0034642:26502-26521 | None:intergenic | 40.0% |
| TGACTATTTCACTATGGGTC+TGG | + | tig0034642:26519-26538 | Msa1453350:intron | 40.0% | |
| TATTTCACTATGGGTCTGGT+TGG | + | tig0034642:26523-26542 | Msa1453350:intron | 40.0% | |
| CTATAAGCTCAAACGCTACT+TGG | - | tig0034642:26689-26708 | None:intergenic | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | tig0034642:26951-26970 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | tig0034642:26952-26971 | None:intergenic | 40.0% |
| TTTGTTTAAACGGAAGGCAG+TGG | - | tig0034642:27134-27153 | None:intergenic | 40.0% | |
| ATTGAATACCCTACGATCGA+TGG | + | tig0034642:27982-28001 | Msa1453350:intron | 40.0% | |
| ! | GTCTTATTCCATCGATCGTA+GGG | - | tig0034642:27993-28012 | None:intergenic | 40.0% |
| ! | TGTCTTATTCCATCGATCGT+AGG | - | tig0034642:27994-28013 | None:intergenic | 40.0% |
| !! | ATCGATATTCAGAAGGCACT+AGG | + | tig0034642:28322-28341 | Msa1453350:CDS | 40.0% |
| ! | AAGACAAGAGCCTTTTATCC+AGG | - | tig0034642:28365-28384 | None:intergenic | 40.0% |
| !! | GTTTCAGCCTCCATTTTTGG+AGG | + | tig0034642:25555-25574 | Msa1453350:CDS | 45.0% |
| ! | GGTTTGGGTCGTCTTTTAGT+CGG | - | tig0034642:25701-25720 | None:intergenic | 45.0% |
| GCGCAACAATAAGTACGAGT+TGG | + | tig0034642:25728-25747 | Msa1453350:CDS | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | - | tig0034642:25874-25893 | None:intergenic | 45.0% | |
| ! | TCCACGTCTGAGTTTTCCTA+TGG | + | tig0034642:25960-25979 | Msa1453350:CDS | 45.0% |
| TCCATAGGAAAACTCAGACG+TGG | - | tig0034642:25964-25983 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | - | tig0034642:26029-26048 | None:intergenic | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | + | tig0034642:26106-26125 | Msa1453350:CDS | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | - | tig0034642:26113-26132 | None:intergenic | 45.0% | |
| ACATGCTTAACACGGCATTG+AGG | - | tig0034642:26134-26153 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | + | tig0034642:26152-26171 | Msa1453350:CDS | 45.0% | |
| AGTATATGGATCTCCCCAGA+AGG | - | tig0034642:26168-26187 | None:intergenic | 45.0% | |
| TTCTATAACCGATGCATGGC+CGG | + | tig0034642:26227-26246 | Msa1453350:intron | 45.0% | |
| ! | GCAACCCAAGCATGGATTTT+AGG | + | tig0034642:26262-26281 | Msa1453350:intron | 45.0% |
| GAGGCCTAAAATCCATGCTT+GGG | - | tig0034642:26269-26288 | None:intergenic | 45.0% | |
| TGAGGCCTAAAATCCATGCT+TGG | - | tig0034642:26270-26289 | None:intergenic | 45.0% | |
| CTCCTTAACATGTGCCCTTA+GGG | + | tig0034642:26934-26953 | Msa1453350:intron | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | + | tig0034642:28328-28347 | Msa1453350:CDS | 45.0% |
| AACACTGAATCTCGCCAGTA+GGG | - | tig0034642:28411-28430 | None:intergenic | 45.0% | |
| TAACACTGAATCTCGCCAGT+AGG | - | tig0034642:28412-28431 | None:intergenic | 45.0% | |
| ACTGGCGAGATTCAGTGTTA+CGG | + | tig0034642:28412-28431 | Msa1453350:CDS | 45.0% | |
| !!! | TTATAATTTTTTTCATAAAA+AGG | + | tig0034642:27173-27192 | Msa1453350:intron | 5.0% |
| !!! | TATAATTTTTTTCATAAAAA+GGG | + | tig0034642:27174-27193 | Msa1453350:intron | 5.0% |
| ! | GGGTCGTCTTTTAGTCGGAA+TGG | - | tig0034642:25696-25715 | None:intergenic | 50.0% |
| ACTTATTGTTGCGCGCACAG+TGG | - | tig0034642:25722-25741 | None:intergenic | 50.0% | |
| GGGAGAGAGGAGCAATTGTT+GGG | - | tig0034642:25861-25880 | None:intergenic | 50.0% | |
| AGGGAGAGAGGAGCAATTGT+TGG | - | tig0034642:25862-25881 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | + | tig0034642:26022-26041 | Msa1453350:CDS | 50.0% | |
| ATTGTTGGGGACCCACAACT+TGG | + | tig0034642:26098-26117 | Msa1453350:CDS | 50.0% | |
| !! | GGCCATGCATCGGTTATAGA+AGG | - | tig0034642:26228-26247 | None:intergenic | 50.0% |
| !! | GGTTGGCCTAACCGATTAAG+AGG | - | tig0034642:26480-26499 | None:intergenic | 50.0% |
| !! | TCGAGTCATTGGTTCAGGGT+TGG | - | tig0034642:26497-26516 | None:intergenic | 50.0% |
| GCTCCTTAACATGTGCCCTT+AGG | + | tig0034642:26933-26952 | Msa1453350:intron | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | tig0034642:26939-26958 | None:intergenic | 50.0% |
| TGTTGCGCGCACAGTGGTTT+GGG | - | tig0034642:25716-25735 | None:intergenic | 55.0% | |
| TTGTTGCGCGCACAGTGGTT+TGG | - | tig0034642:25717-25736 | None:intergenic | 55.0% | |
| ! | GCTTGGGTTGCTTGACCCTT+AGG | - | tig0034642:26253-26272 | None:intergenic | 55.0% |
| AGGGTCAAGCAACCCAAGCA+TGG | + | tig0034642:26254-26273 | Msa1453350:intron | 55.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | + | tig0034642:28394-28413 | Msa1453350:CDS | 55.0% | |
| GGCGAGATTCAGTGTTACGG+CGG | + | tig0034642:28415-28434 | Msa1453350:CDS | 55.0% | |
| GGGTTGCTTGACCCTTAGGC+CGG | - | tig0034642:26249-26268 | None:intergenic | 60.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | - | tig0034642:28402-28421 | None:intergenic | 60.0% | |
| ACCGATGCATGGCCGGCCTA+AGG | + | tig0034642:26234-26253 | Msa1453350:intron | 65.0% | |
| CCCTTAGGCCGGCCATGCAT+CGG | - | tig0034642:26238-26257 | None:intergenic | 65.0% | |
| CCGATGCATGGCCGGCCTAA+GGG | + | tig0034642:26235-26254 | Msa1453350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034642 | gene | 25472 | 28471 | 25472 | ID=Msa1453350;Name=Msa1453350 |
| tig0034642 | mRNA | 25472 | 28471 | 25472 | ID=Msa1453350-mRNA-1;Parent=Msa1453350;Name=Msa1453350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=80|1|0.5|1|1|1|2|0|273 |
| tig0034642 | exon | 25472 | 26206 | 25472 | ID=Msa1453350-mRNA-1:exon:19108;Parent=Msa1453350-mRNA-1 |
| tig0034642 | exon | 28308 | 28471 | 28308 | ID=Msa1453350-mRNA-1:exon:19109;Parent=Msa1453350-mRNA-1 |
| tig0034642 | five_prime_UTR | 25472 | 25551 | 25472 | ID=Msa1453350-mRNA-1:five_prime_utr;Parent=Msa1453350-mRNA-1 |
| tig0034642 | CDS | 25552 | 26206 | 25552 | ID=Msa1453350-mRNA-1:cds;Parent=Msa1453350-mRNA-1 |
| tig0034642 | CDS | 28308 | 28471 | 28308 | ID=Msa1453350-mRNA-1:cds;Parent=Msa1453350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
