AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0009750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009750 MtrunA17_Chr1g0158781 92.746 386 26 2 1 384 1 386 0.0 684
Msa0009750 MtrunA17_Chr3g0112291 49.695 328 129 10 80 378 56 376 7.11e-91 278
Msa0009750 MtrunA17_Chr5g0396731 53.333 285 118 4 110 381 72 354 3.28e-90 275
Msa0009750 MtrunA17_Chr4g0070871 45.042 353 153 8 63 380 160 506 9.02e-83 261
Msa0009750 MtrunA17_Chr1g0150781 48.418 316 121 8 102 378 232 544 1.68e-81 259
Msa0009750 MtrunA17_Chr3g0135961 46.729 321 126 8 102 379 223 541 1.22e-79 254
Msa0009750 MtrunA17_Chr2g0299981 42.975 363 153 10 65 379 181 537 3.94e-79 253
Msa0009750 MtrunA17_Chr5g0435721 48.113 318 133 7 69 364 155 462 8.38e-79 250
Msa0009750 MtrunA17_Chr8g0389921 42.560 336 156 6 75 378 105 435 1.94e-71 230
Msa0009750 MtrunA17_Chr1g0150451 39.051 274 140 7 105 375 72 321 2.43e-46 161
Msa0009750 MtrunA17_Chr3g0136711 38.889 270 138 7 109 375 33 278 6.89e-46 159
Msa0009750 MtrunA17_Chr1g0212961 38.235 272 133 9 109 375 94 335 1.16e-42 152
Msa0009750 MtrunA17_Chr3g0126511 34.783 299 168 7 80 375 64 338 2.43e-40 146
Msa0009750 MtrunA17_Chr3g0105371 36.704 267 147 7 118 381 95 342 2.19e-38 140
Msa0009750 MtrunA17_Chr3g0105351 36.502 263 147 7 118 378 71 315 4.40e-38 139
Msa0009750 MtrunA17_Chr5g0430481 36.090 266 144 7 118 378 131 375 1.06e-37 139
Msa0009750 MtrunA17_Chr1g0194191 32.394 355 198 13 47 377 13 349 2.23e-36 136
Msa0009750 MtrunA17_Chr5g0407161 33.217 286 146 11 109 375 84 343 9.87e-35 131
Msa0009750 MtrunA17_Chr4g0065141 32.517 286 153 9 109 375 84 348 2.39e-34 130
Msa0009750 MtrunA17_Chr3g0138281 31.464 321 174 10 72 375 52 343 1.94e-33 128
Msa0009750 MtrunA17_Chr4g0050381 33.692 279 155 9 106 379 25 278 1.69e-32 123
Msa0009750 MtrunA17_Chr2g0293811 32.394 284 159 10 112 377 63 331 1.90e-32 125
Msa0009750 MtrunA17_Chr1g0150071 29.607 331 162 11 109 384 22 336 5.40e-30 118
Msa0009750 MtrunA17_Chr8g0360351 35.907 259 133 8 123 375 48 279 5.98e-30 116
Msa0009750 MtrunA17_Chr3g0136811 30.211 331 160 10 109 384 22 336 1.44e-29 117
Msa0009750 MtrunA17_Chr5g0426141 33.858 254 135 8 132 378 55 282 1.92e-29 115
Msa0009750 MtrunA17_Chr2g0317021 34.100 261 143 7 122 378 98 333 3.72e-29 115
Msa0009750 MtrunA17_Chr4g0001761 30.448 335 151 10 109 383 22 334 5.55e-28 113
Msa0009750 MtrunA17_Chr1g0171571 33.439 314 168 11 81 378 357 645 8.22e-28 115
Msa0009750 MtrunA17_Chr3g0144111 34.583 240 109 9 143 375 27 225 1.14e-27 109
Msa0009750 MtrunA17_Chr4g0051661 30.363 303 170 9 77 375 130 395 7.71e-27 110
Msa0009750 MtrunA17_Chr2g0279151 33.213 277 157 8 106 378 29 281 7.85e-27 108
Msa0009750 MtrunA17_Chr3g0115851 32.000 250 143 7 133 378 56 282 1.82e-26 107
Msa0009750 MtrunA17_Chr6g0483411 31.698 265 151 10 91 333 29 285 1.77e-25 105
Msa0009750 MtrunA17_Chr3g0127091 29.841 315 159 14 108 380 58 352 2.08e-25 106
Msa0009750 MtrunA17_Chr1g0151781 31.535 241 125 9 124 328 52 288 3.74e-24 102
Msa0009750 MtrunA17_Chr2g0295401 31.364 220 115 7 145 328 94 313 1.48e-22 97.8
Msa0009750 MtrunA17_Chr3g0089721 31.939 263 119 12 119 330 38 291 2.20e-22 97.4
Msa0009750 MtrunA17_Chr4g0067711 32.432 222 114 6 143 328 91 312 2.29e-22 97.1
Msa0009750 MtrunA17_Chr1g0185141 30.216 278 132 10 152 377 171 438 3.48e-22 99.0
Msa0009750 MtrunA17_Chr4g0066371 29.818 275 137 11 143 379 86 342 5.02e-22 96.7
Msa0009750 MtrunA17_Chr3g0089711 31.559 263 120 12 119 330 38 291 7.99e-22 95.9
Msa0009750 MtrunA17_Chr1g0192421 33.333 222 112 9 143 328 89 310 1.21e-20 92.0
Msa0009750 MtrunA17_Chr4g0004971 30.962 239 121 10 124 321 61 296 1.84e-20 91.7
Msa0009750 MtrunA17_Chr8g0371321 28.881 277 153 8 94 329 28 301 3.27e-20 91.3
Msa0009750 MtrunA17_Chr1g0211251 27.875 287 169 8 90 338 26 312 7.78e-20 90.5
Msa0009750 MtrunA17_Chr1g0213351 25.949 316 174 10 113 377 48 354 1.96e-19 89.0
Msa0009750 MtrunA17_Chr1g0181901 29.075 227 125 5 138 328 71 297 2.34e-19 89.0
Msa0009750 MtrunA17_Chr7g0250061 30.342 234 123 6 143 338 76 307 5.86e-19 87.8
Msa0009750 MtrunA17_Chr2g0324061 29.249 253 128 8 124 328 74 323 5.92e-19 88.2
Msa0009750 MtrunA17_Chr7g0263281 26.493 268 151 6 113 338 39 302 1.15e-18 86.7
Msa0009750 MtrunA17_Chr7g0243571 28.968 252 130 9 124 328 75 324 3.33e-18 85.9
Msa0009750 MtrunA17_Chr1g0207571 28.814 236 126 5 143 338 61 294 3.33e-18 85.5
Msa0009750 MtrunA17_Chr7g0256751 28.906 256 135 9 113 329 44 291 6.63e-18 85.1
Msa0009750 MtrunA17_Chr7g0249421 32.990 194 111 5 153 328 152 344 1.15e-17 84.3
Msa0009750 MtrunA17_Chr7g0272061 30.736 231 115 9 143 328 91 321 5.83e-17 81.6
Msa0009750 MtrunA17_Chr3g0133801 28.745 247 145 8 144 377 67 295 9.88e-17 81.3
Msa0009750 MtrunA17_Chr7g0221691 29.167 288 141 14 102 328 84 369 1.58e-16 80.9
Msa0009750 MtrunA17_Chr1g0153671 28.745 247 145 8 144 377 66 294 3.31e-16 79.7
Msa0009750 MtrunA17_Chr2g0286951 28.315 279 144 10 143 383 87 347 7.58e-16 78.6
Msa0009750 MtrunA17_Chr4g0022171 28.346 254 130 8 124 328 80 330 7.97e-16 79.0
Msa0009750 MtrunA17_Chr1g0209451 28.261 276 158 11 121 377 43 297 8.47e-16 78.6
Msa0009750 MtrunA17_Chr8g0342431 29.044 272 120 10 124 328 69 334 8.08e-15 75.5
Msa0009750 MtrunA17_Chr7g0256771 28.295 258 134 9 113 329 45 292 8.24e-15 74.7
Msa0009750 MtrunA17_Chr1g0175381 26.733 303 180 11 86 352 28 324 8.69e-15 75.1
Msa0009750 MtrunA17_Chr3g0089691 35.443 158 67 6 206 330 50 205 1.61e-14 73.6
Msa0009750 MtrunA17_Chr1g0192471 29.749 279 156 11 118 377 40 297 2.86e-14 73.9
Msa0009750 MtrunA17_Chr7g0225501 29.249 253 140 11 144 377 87 319 8.15e-14 72.4
Msa0009750 MtrunA17_Chr7g0238501 23.611 288 171 9 143 381 263 550 1.21e-13 72.4
Msa0009750 MtrunA17_Chr7g0271971 28.520 277 162 10 118 377 40 297 1.62e-13 71.6
Msa0009750 MtrunA17_Chr4g0063111 28.514 249 141 8 111 328 48 290 1.74e-13 71.6
Msa0009750 MtrunA17_Chr5g0394181 25.887 282 164 9 118 377 339 597 8.31e-13 69.7
Msa0009750 MtrunA17_Chr4g0068971 34.965 143 72 7 241 377 104 231 8.10e-12 65.1
Msa0009750 MtrunA17_Chr4g0063051 27.165 254 140 11 98 330 26 255 1.66e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009750 AT2G29380.1 48.494 332 142 8 65 378 41 361 1.34e-89 275
Msa0009750 AT1G07430.1 47.040 321 117 6 107 378 118 434 1.99e-86 269
Msa0009750 AT3G11410.1 53.659 246 88 3 112 334 106 348 5.19e-82 256
Msa0009750 AT5G59220.1 55.328 244 86 4 111 336 112 350 1.37e-80 253
Msa0009750 AT4G26080.1 47.541 305 130 7 102 378 121 423 1.79e-79 251
Msa0009750 AT1G72770.4 46.505 329 118 9 102 379 182 503 3.96e-79 252
Msa0009750 AT1G72770.1 46.505 329 118 9 102 379 182 503 3.96e-79 252
Msa0009750 AT1G72770.3 46.505 329 118 9 102 379 182 503 3.96e-79 252
Msa0009750 AT1G17550.1 46.012 326 125 9 102 379 181 503 1.96e-78 250
Msa0009750 AT1G17550.2 46.012 326 125 9 102 379 181 503 1.96e-78 250
Msa0009750 AT5G57050.2 44.220 346 151 8 75 379 29 373 1.45e-76 242
Msa0009750 AT5G57050.1 46.452 310 133 7 102 379 105 413 2.29e-76 243
Msa0009750 AT5G51760.2 39.941 338 162 8 79 380 52 384 6.87e-68 219
Msa0009750 AT5G51760.1 39.941 338 162 8 79 380 82 414 1.80e-67 219
Msa0009750 AT5G59220.2 52.105 190 68 4 111 282 112 296 1.97e-50 171
Msa0009750 AT1G72770.2 47.964 221 74 7 102 282 182 401 1.50e-48 169
Msa0009750 AT1G72770.5 47.964 221 74 7 102 282 182 401 1.50e-48 169
Msa0009750 AT5G57050.3 47.826 207 84 6 102 286 105 309 2.16e-47 164
Msa0009750 AT5G10740.1 39.416 274 139 9 105 375 28 277 7.83e-46 161
Msa0009750 AT5G10740.2 39.416 274 139 9 105 375 28 277 7.83e-46 161
Msa0009750 AT1G43900.1 38.971 272 134 8 109 375 122 366 2.14e-45 160
Msa0009750 AT5G24940.1 38.686 274 141 7 105 375 28 277 5.18e-45 161
Msa0009750 AT4G31750.2 37.248 298 156 8 81 375 8 277 5.39e-45 157
Msa0009750 AT4G31750.1 37.248 298 156 8 81 375 8 277 7.74e-45 157
Msa0009750 AT4G31750.3 37.248 298 156 8 81 375 8 277 7.74e-45 157
Msa0009750 AT1G67820.2 44.037 218 115 4 112 328 86 297 8.28e-42 152
Msa0009750 AT1G67820.1 44.037 218 115 4 112 328 122 333 1.20e-41 152
Msa0009750 AT2G40180.1 37.828 267 150 6 118 381 136 389 1.21e-40 148
Msa0009750 AT5G53140.1 37.091 275 142 8 109 378 100 348 2.50e-40 148
Msa0009750 AT5G53140.2 37.091 275 142 8 109 378 100 348 2.50e-40 148
Msa0009750 AT1G07160.1 37.548 261 148 6 118 377 130 376 2.46e-39 144
Msa0009750 AT2G30020.1 38.168 262 146 6 118 378 147 393 4.31e-39 144
Msa0009750 AT2G33700.1 36.777 242 122 9 143 375 123 342 4.33e-36 135
Msa0009750 AT3G51470.2 33.942 274 149 9 112 375 30 281 9.55e-36 133
Msa0009750 AT3G51470.1 34.182 275 147 10 112 375 74 325 2.30e-35 133
Msa0009750 AT3G62260.2 33.569 283 154 9 112 375 80 347 2.47e-35 134
Msa0009750 AT3G62260.1 33.569 283 154 9 112 375 79 346 3.07e-35 133
Msa0009750 AT3G62260.3 35.366 246 131 8 143 375 27 257 2.14e-34 129
Msa0009750 AT2G25620.1 34.138 290 145 12 112 378 91 357 3.24e-32 125
Msa0009750 AT2G25620.2 34.138 290 145 12 112 378 91 357 3.24e-32 125
Msa0009750 AT1G48040.1 35.689 283 148 10 112 375 80 347 2.03e-31 123
Msa0009750 AT3G15260.2 32.381 315 175 9 69 378 8 289 9.38e-31 119
Msa0009750 AT3G15260.1 32.381 315 175 9 69 378 8 289 9.38e-31 119
Msa0009750 AT1G78200.5 33.597 253 138 6 133 378 9 238 9.39e-31 117
Msa0009750 AT1G78200.4 33.597 253 138 6 133 378 9 238 9.39e-31 117
Msa0009750 AT1G78200.1 33.597 253 138 6 133 378 54 283 2.39e-30 118
Msa0009750 AT1G78200.3 33.597 253 138 6 133 378 54 283 2.39e-30 118
Msa0009750 AT1G78200.2 33.597 253 138 6 133 378 54 283 2.39e-30 118
Msa0009750 AT2G25070.1 30.154 325 156 11 109 378 22 330 1.34e-29 117
Msa0009750 AT2G25070.2 30.154 325 156 11 109 378 22 330 1.34e-29 117
Msa0009750 AT1G34750.2 33.865 251 137 7 133 378 56 282 1.59e-29 115
Msa0009750 AT1G34750.1 33.865 251 137 7 133 378 56 282 1.59e-29 115
Msa0009750 AT1G34750.3 33.865 251 137 7 133 378 56 282 1.59e-29 115
Msa0009750 AT4G31860.3 32.584 267 120 7 109 322 22 281 4.60e-29 114
Msa0009750 AT4G31860.1 32.584 267 120 7 109 322 22 281 1.25e-28 115
Msa0009750 AT4G31860.2 32.567 261 116 7 109 316 22 275 1.23e-27 110
Msa0009750 AT1G22280.3 33.745 243 134 8 143 378 65 287 1.34e-27 110
Msa0009750 AT2G40860.4 34.155 284 148 10 109 378 293 551 3.78e-27 113
Msa0009750 AT2G40860.1 34.155 284 148 10 109 378 391 649 5.08e-27 113
Msa0009750 AT5G26010.1 33.818 275 147 11 79 321 5 276 7.52e-27 109
Msa0009750 AT2G34740.1 31.373 255 143 8 132 377 103 334 9.97e-27 109
Msa0009750 AT3G17250.1 32.530 249 137 8 143 375 158 391 1.15e-26 110
Msa0009750 AT4G27800.1 29.808 312 157 11 108 377 57 348 1.39e-26 109
Msa0009750 AT1G22280.1 32.922 243 130 8 143 378 65 281 3.64e-26 106
Msa0009750 AT4G28400.3 30.769 260 151 7 123 378 27 261 1.08e-25 104
Msa0009750 AT4G28400.1 30.769 260 151 7 123 378 49 283 2.25e-25 104
Msa0009750 AT4G32950.1 31.449 283 158 10 95 355 26 294 6.57e-25 103
Msa0009750 AT1G34750.4 36.126 191 109 6 133 318 56 238 1.05e-24 101
Msa0009750 AT2G20630.1 31.518 257 147 7 123 375 45 276 1.69e-24 102
Msa0009750 AT2G40860.2 33.891 239 134 7 109 333 391 619 3.43e-24 104
Msa0009750 AT4G11040.1 31.408 277 126 10 111 383 79 295 4.02e-24 101
Msa0009750 AT2G20630.2 31.250 256 147 7 123 374 45 275 8.95e-24 100
Msa0009750 AT3G16800.2 33.333 222 116 9 139 329 89 309 1.08e-23 101
Msa0009750 AT3G16800.1 33.333 222 116 9 139 329 89 309 1.08e-23 101
Msa0009750 AT3G16800.3 33.333 222 116 9 139 329 89 309 1.08e-23 101
Msa0009750 AT5G66080.1 30.769 286 155 7 94 338 30 313 1.81e-23 100
Msa0009750 AT3G51370.1 30.314 287 158 7 92 338 26 310 5.31e-23 99.8
Msa0009750 AT3G51370.3 30.314 287 158 7 92 338 26 310 5.31e-23 99.8
Msa0009750 AT5G02760.1 29.368 269 140 9 113 338 40 301 1.28e-22 98.6
Msa0009750 AT3G16800.4 33.023 215 112 9 146 329 1 214 1.41e-22 96.3
Msa0009750 AT3G16800.6 33.023 215 112 9 146 329 1 214 1.41e-22 96.3
Msa0009750 AT4G27800.2 29.097 299 150 11 108 364 57 335 1.85e-22 97.4
Msa0009750 AT4G27800.3 29.496 278 140 10 108 343 57 320 3.08e-22 96.7
Msa0009750 AT4G28400.2 33.500 200 120 6 123 318 49 239 3.56e-22 95.1
Msa0009750 AT4G08260.1 32.766 235 113 8 144 378 20 209 6.00e-22 93.2
Msa0009750 AT1G18030.1 31.250 240 135 9 118 333 82 315 6.52e-22 96.3
Msa0009750 AT4G32950.2 32.099 243 138 10 95 315 26 263 2.33e-21 93.2
Msa0009750 AT4G33920.1 28.698 338 174 13 93 377 15 338 2.68e-21 94.7
Msa0009750 AT3G55050.1 26.163 344 202 10 84 380 23 361 7.21e-21 93.6
Msa0009750 AT3G55050.2 26.163 344 202 10 84 380 23 361 7.21e-21 93.6
Msa0009750 AT2G20050.1 31.474 251 119 11 121 330 123 361 9.28e-21 95.1
Msa0009750 AT2G20050.2 31.474 251 119 11 121 330 123 361 9.45e-21 95.1
Msa0009750 AT1G18030.2 31.556 225 124 9 118 318 82 300 2.75e-20 90.9
Msa0009750 AT2G34740.2 31.122 196 119 6 132 318 117 305 3.50e-20 90.9
Msa0009750 AT3G12620.2 28.413 271 142 9 113 338 51 314 3.58e-20 91.7
Msa0009750 AT3G12620.1 28.413 271 142 9 113 338 51 314 3.58e-20 91.7
Msa0009750 AT2G34740.3 31.122 196 119 6 132 318 99 287 4.01e-20 90.5
Msa0009750 AT5G27930.1 33.632 223 111 7 143 328 92 314 1.16e-19 90.1
Msa0009750 AT5G27930.2 33.632 223 111 7 143 328 92 314 1.16e-19 90.1
Msa0009750 AT1G03590.1 30.159 252 126 8 124 328 74 322 2.16e-19 90.1
Msa0009750 AT4G38520.2 28.223 287 150 8 90 329 26 303 3.58e-19 89.0
Msa0009750 AT4G38520.1 28.223 287 150 8 90 329 26 303 3.58e-19 89.0
Msa0009750 AT3G17090.1 27.653 311 179 11 113 383 60 364 1.54e-18 86.7
Msa0009750 AT5G01700.1 30.992 242 131 9 124 331 12 251 3.14e-18 85.1
Msa0009750 AT3G17090.2 28.346 254 140 8 113 330 60 307 3.35e-18 85.1
Msa0009750 AT3G63320.2 31.224 237 111 8 193 381 69 301 3.79e-18 85.5
Msa0009750 AT5G01700.2 30.992 242 131 9 124 331 61 300 8.26e-18 84.7
Msa0009750 AT3G63320.1 31.224 237 111 8 193 381 152 384 1.18e-17 84.3
Msa0009750 AT5G66080.2 34.555 191 89 5 182 338 21 209 1.87e-17 82.4
Msa0009750 AT2G40860.3 33.023 215 120 7 109 309 391 595 2.04e-17 84.3
Msa0009750 AT3G63340.6 31.222 221 102 6 207 381 233 449 4.47e-17 83.6
Msa0009750 AT3G63340.3 31.222 221 102 6 207 381 233 449 4.47e-17 83.6
Msa0009750 AT3G63340.10 31.222 221 102 6 207 381 233 449 4.47e-17 83.6
Msa0009750 AT3G63340.4 31.222 221 102 6 207 381 233 449 4.47e-17 83.6
Msa0009750 AT3G63340.11 31.222 221 102 6 207 381 233 449 4.81e-17 83.6
Msa0009750 AT3G63340.7 31.222 221 102 6 207 381 233 449 5.09e-17 83.6
Msa0009750 AT3G63340.8 31.222 221 102 6 207 381 233 449 5.18e-17 83.6
Msa0009750 AT3G63340.5 31.222 221 102 6 207 381 233 449 5.58e-17 83.6
Msa0009750 AT3G63340.1 31.222 221 102 6 207 381 233 449 5.58e-17 83.6
Msa0009750 AT1G47380.1 28.438 320 182 12 72 377 7 293 6.25e-17 82.4
Msa0009750 AT3G63340.12 31.222 221 102 6 207 381 233 449 6.50e-17 82.8
Msa0009750 AT4G03415.1 29.412 255 127 8 124 328 81 332 7.06e-17 82.4
Msa0009750 AT4G03415.3 29.412 255 127 8 124 328 81 332 7.06e-17 82.4
Msa0009750 AT4G03415.2 29.412 255 127 8 124 328 81 332 7.06e-17 82.4
Msa0009750 AT1G79630.2 35.484 155 82 4 192 328 135 289 1.14e-16 81.6
Msa0009750 AT1G79630.7 35.484 155 82 4 192 328 135 289 1.14e-16 81.6
Msa0009750 AT1G79630.6 34.568 162 87 5 185 328 89 249 1.23e-16 81.3
Msa0009750 AT1G79630.3 34.568 162 87 5 185 328 89 249 1.23e-16 81.3
Msa0009750 AT1G79630.4 34.568 162 87 5 185 328 89 249 1.23e-16 81.3
Msa0009750 AT1G79630.5 34.568 162 87 5 185 328 89 249 1.23e-16 81.3
Msa0009750 AT3G02750.2 36.306 157 82 5 190 328 197 353 1.45e-16 81.6
Msa0009750 AT3G02750.1 36.306 157 82 5 190 328 197 353 1.45e-16 81.6
Msa0009750 AT1G79630.1 35.484 155 82 4 192 328 205 359 1.63e-16 81.3
Msa0009750 AT5G06750.3 28.137 263 132 8 113 330 58 308 1.65e-16 80.9
Msa0009750 AT5G06750.1 28.137 263 132 8 113 330 58 308 1.65e-16 80.9
Msa0009750 AT1G09160.2 31.048 248 138 9 144 377 69 297 1.74e-16 80.9
Msa0009750 AT1G09160.1 31.048 248 138 9 144 377 69 297 1.74e-16 80.9
Msa0009750 AT1G79630.8 35.484 155 82 4 192 328 201 355 1.76e-16 81.3
Msa0009750 AT1G16220.1 31.667 180 105 4 167 328 157 336 2.59e-16 80.9
Msa0009750 AT1G68410.4 30.159 252 135 11 144 377 74 302 5.42e-16 79.7
Msa0009750 AT1G68410.3 30.159 252 135 11 144 377 74 302 5.42e-16 79.7
Msa0009750 AT1G68410.1 30.159 252 135 11 144 377 74 302 5.42e-16 79.7
Msa0009750 AT1G68410.2 30.159 252 135 11 144 377 74 302 5.42e-16 79.7
Msa0009750 AT3G06270.1 25.510 294 165 9 121 378 68 343 7.75e-16 78.6
Msa0009750 AT4G33920.2 31.933 238 106 10 187 377 27 255 1.19e-15 77.4
Msa0009750 AT3G63340.2 37.415 147 85 4 238 381 340 482 1.33e-15 79.3
Msa0009750 AT3G51370.2 32.984 191 92 5 182 338 37 225 2.04e-15 76.6
Msa0009750 AT3G05640.2 39.130 138 68 4 207 328 172 309 2.10e-15 77.4
Msa0009750 AT3G05640.1 39.130 138 68 4 207 328 172 309 2.10e-15 77.4
Msa0009750 AT3G05640.3 39.130 138 68 4 207 328 172 309 2.10e-15 77.4
Msa0009750 AT4G33920.3 31.739 230 102 9 195 377 4 225 5.91e-15 74.7
Msa0009750 AT5G36250.1 26.797 306 144 11 102 330 44 346 1.25e-14 75.5
Msa0009750 AT2G05050.1 28.511 235 104 8 144 378 20 190 4.33e-13 67.8
Msa0009750 AT5G19280.2 28.425 292 163 12 118 381 318 591 4.81e-13 70.9
Msa0009750 AT5G36250.3 27.036 307 139 12 102 331 44 342 5.62e-12 67.0
Msa0009750 AT5G36250.2 27.036 307 139 12 102 331 44 342 8.72e-12 67.0
Msa0009750 AT1G22280.2 33.333 135 75 6 143 272 65 189 6.53e-11 61.6

Find 106 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGAGGAGGTGGAGAAGTA+TGG 0.235504 1_1:+14595841 Msa0009750:CDS
CTCTTTGTCACAGTGACTTC+AGG 0.244276 1_1:-14598365 None:intergenic
AATGCTTCAAAGGTCAAATT+AGG 0.290408 1_1:+14598474 Msa0009750:CDS
ATCAACTCATCAGGCCTGTT+TGG 0.331017 1_1:-14596625 None:intergenic
CTCAGGTGGCGGAGGCATGT+AGG 0.340433 1_1:+14595797 Msa0009750:CDS
CTTGCAACCTCACGATCTAT+AGG 0.347379 1_1:+14596709 Msa0009750:CDS
AATGTTAACTTGTGCTCTTA+AGG 0.355420 1_1:+14598670 Msa0009750:three_prime_UTR
TAGATCTTAATGTTCCTCTT+AGG 0.358874 1_1:-14598613 None:intergenic
ACCGGAGAAGATTGAAAATT+CGG 0.361358 1_1:+14595361 Msa0009750:CDS
AGCTGTAGCGGTTGTTGTTA+AGG 0.381851 1_1:+14595969 Msa0009750:CDS
GGGAAGAGGTGGTGAAGCTT+TGG 0.383271 1_1:+14596035 Msa0009750:CDS
TATGAGAAATTCATCATCAT+TGG 0.394383 1_1:-14598390 None:intergenic
AGAGTGATGGAAGGGTGTTT+TGG 0.394683 1_1:+14595889 Msa0009750:CDS
TGGAATGGCCACCGTGTTCT+TGG 0.396208 1_1:+14596682 Msa0009750:CDS
CTGGTGGAAGAGTTATAAAC+TGG 0.397688 1_1:+14596662 Msa0009750:CDS
GGATTTGTCAAGTGATCATA+AGG 0.404582 1_1:+14596056 Msa0009750:CDS
GTGGAGAAGTATGGGAATGA+TGG 0.407900 1_1:+14595850 Msa0009750:CDS
GCAAAGATCCATGTCGGAAA+TGG 0.417625 1_1:+14595405 Msa0009750:CDS
TCTATTCTCATCAACTCATC+AGG 0.424557 1_1:-14596634 None:intergenic
TTGTTTGTACACAGCCAAAC+AGG 0.432694 1_1:+14596611 Msa0009750:intron
TGACGGCCACGGTGGTGCTC+AGG 0.456721 1_1:+14595780 Msa0009750:CDS
AAATGGCTCCGACGGTGATC+GGG 0.458716 1_1:+14595422 Msa0009750:CDS
TAGGATTGTGGCGGAGGAGG+TGG 0.460409 1_1:+14595831 Msa0009750:CDS
CGGAGGAGGTGGAGAAGTAT+GGG 0.475067 1_1:+14595842 Msa0009750:CDS
TGGTGATTCTAGAGCCGTCT+TGG 0.475428 1_1:+14596014 Msa0009750:CDS
TGGCTGGTGATGCCACGGTT+AGG 0.477314 1_1:+14595929 Msa0009750:CDS
CGGTGGTGCTCAGGTGGCGG+AGG 0.480406 1_1:+14595789 Msa0009750:CDS
TGGAGAAGTATGGGAATGAT+GGG 0.480508 1_1:+14595851 Msa0009750:CDS
GATAGGGTGTAGGAAGGAAA+TGG 0.481470 1_1:+14595687 Msa0009750:CDS
AGCTTCGTAACGGCTCCAAC+CGG 0.483069 1_1:-14595327 None:intergenic
GAAATGGCTCCGACGGTGAT+CGG 0.487202 1_1:+14595421 Msa0009750:CDS
CCACGGTGGTGCTCAGGTGG+CGG 0.489341 1_1:+14595786 Msa0009750:CDS
TGGTAAAATGGATAGGGAGG+TGG 0.492394 1_1:+14595909 Msa0009750:CDS
ACTAGCAAGTGATGGCTTGT+GGG 0.496581 1_1:+14598412 Msa0009750:CDS
CATGGTTCGGTGTCAACGAT+AGG 0.497255 1_1:+14595670 Msa0009750:CDS
TACTAGCAAGTGATGGCTTG+TGG 0.499391 1_1:+14598411 Msa0009750:CDS
GTCATAGTTGTTGACCTAAG+AGG 0.501868 1_1:+14598599 Msa0009750:CDS
ATTTGAGTGGGAGAGAGTGA+TGG 0.507256 1_1:+14595876 Msa0009750:CDS
GACACCGAACCATGCGATAG+AGG 0.509597 1_1:-14595661 None:intergenic
CTCCGACGGTGATCGGGAAA+CGG 0.509719 1_1:+14595428 Msa0009750:CDS
ACATAGGATTGTGGCGGAGG+AGG 0.510112 1_1:+14595828 Msa0009750:CDS
TCAGGTGGCGGAGGCATGTA+GGG 0.511234 1_1:+14595798 Msa0009750:CDS
TCTAGAGCCGTCTTGGGAAG+AGG 0.518511 1_1:+14596021 Msa0009750:CDS
GTTGTAAGAAAATGCTTCAA+AGG 0.519484 1_1:+14598464 Msa0009750:CDS
TGTTGAGATATCGTTGTCGT+TGG 0.521018 1_1:+14595479 Msa0009750:CDS
GGTGATTCTAGAGCCGTCTT+GGG 0.523572 1_1:+14596015 Msa0009750:CDS
ATTACATAGGATTGTGGCGG+AGG 0.524499 1_1:+14595825 Msa0009750:CDS
CGACGAGTGGATTCTCCGGT+TGG 0.528374 1_1:+14595312 Msa0009750:CDS
CTCCGTTTCCCGATCACCGT+CGG 0.535759 1_1:-14595430 None:intergenic
AATGGAGGATGCGGTGAGTG+TGG 0.538165 1_1:+14595705 Msa0009750:CDS
TAGGAAGGAAATGGAGGATG+CGG 0.544057 1_1:+14595696 Msa0009750:CDS
GGAATCTTCTCTCCGACGAG+TGG 0.547552 1_1:+14595299 Msa0009750:CDS
ATGGTTCGGTGTCAACGATA+GGG 0.549454 1_1:+14595671 Msa0009750:CDS
AAACATGAAACGACACTCAT+CGG 0.550810 1_1:+14595278 Msa0009750:CDS
ACGACCTCTATCGCATGGTT+CGG 0.552860 1_1:+14595657 Msa0009750:CDS
GTCTGAGATAGCATTGGCAA+AGG 0.555565 1_1:+14598556 Msa0009750:CDS
TTCGGTGTTTATGACGGCCA+CGG 0.562528 1_1:+14595769 Msa0009750:CDS
GATGCCACGGTTAGGACCGT+AGG 0.567546 1_1:+14595937 Msa0009750:CDS
CGGCCACGGTGGTGCTCAGG+TGG 0.569428 1_1:+14595783 Msa0009750:CDS
GATCAGTCGTCCAAGCAAAA+CGG 0.569687 1_1:+14595525 Msa0009750:CDS
TCTCCGACGAGTGGATTCTC+CGG 0.570803 1_1:+14595308 Msa0009750:CDS
AAATTAGGAGAGTTTGTCAT+GGG 0.571829 1_1:+14598489 Msa0009750:CDS
AAAATGGATAGGGAGGTGGC+TGG 0.576826 1_1:+14595913 Msa0009750:CDS
TCTGAGATAGCATTGGCAAA+GGG 0.577103 1_1:+14598557 Msa0009750:CDS
GGAAGAGTTATAAACTGGAA+TGG 0.578243 1_1:+14596667 Msa0009750:CDS
CGGTGTCAACGATAGGGTGT+AGG 0.578460 1_1:+14595677 Msa0009750:CDS
TTGATGAGAATAGAAGAAGC+TGG 0.583873 1_1:+14596643 Msa0009750:CDS
CGTCGGAGCCATTTCCGACA+TGG 0.586799 1_1:-14595413 None:intergenic
TTTCTCATACTAGCAAGTGA+TGG 0.589407 1_1:+14598404 Msa0009750:CDS
TACAGCTGCGGTAGACCCTA+CGG 0.592442 1_1:-14595953 None:intergenic
GAGTGGGAGAGAGTGATGGA+AGG 0.592483 1_1:+14595880 Msa0009750:CDS
CATGTCGGAAATGGCTCCGA+CGG 0.594465 1_1:+14595414 Msa0009750:CDS
GGAATGATGGGGAATTTGAG+TGG 0.595276 1_1:+14595863 Msa0009750:CDS
AGGGTGTAGGAAGGAAATGG+AGG 0.598498 1_1:+14595690 Msa0009750:CDS
ACTATTGTCTGAGATAGCAT+TGG 0.602546 1_1:+14598550 Msa0009750:CDS
AACATTCTCTAGCTTCGTAA+CGG 0.604268 1_1:-14595337 None:intergenic
CAAATTAGGAGAGTTTGTCA+TGG 0.604707 1_1:+14598488 Msa0009750:CDS
GGAGGTGGCTGGTGATGCCA+CGG 0.615165 1_1:+14595924 Msa0009750:CDS
AGGGTCTACCGCAGCTGTAG+CGG 0.619744 1_1:+14595957 Msa0009750:CDS
ATGCCACGGTTAGGACCGTA+GGG 0.622695 1_1:+14595938 Msa0009750:CDS
AACAACAACCGCTACAGCTG+CGG 0.624534 1_1:-14595965 None:intergenic
TGTAGCGGTTGTTGTTAAGG+AGG 0.627633 1_1:+14595972 Msa0009750:CDS
GGAGAGATTACATAGGATTG+TGG 0.628007 1_1:+14595819 Msa0009750:CDS
ATGAGAATAGAAGAAGCTGG+TGG 0.630044 1_1:+14596646 Msa0009750:CDS
GTTGGCTTCGTCATCATCAG+AGG 0.630855 1_1:+14595497 Msa0009750:CDS
CTAGCAAGTGATGGCTTGTG+GGG 0.633102 1_1:+14598413 Msa0009750:CDS
AGTGGGAGAGAGTGATGGAA+GGG 0.635076 1_1:+14595881 Msa0009750:CDS
CAACAACGACCTCTATCGCA+TGG 0.636873 1_1:+14595652 Msa0009750:CDS
GAATGATGGGGAATTTGAGT+GGG 0.638753 1_1:+14595864 Msa0009750:CDS
GTCAACGATAGGGTGTAGGA+AGG 0.646408 1_1:+14595681 Msa0009750:CDS
TAACCAACCTATAGATCGTG+AGG 0.647099 1_1:-14596716 None:intergenic
CGAAGCTAGAGAATGTTCAC+CGG 0.650904 1_1:+14595343 Msa0009750:CDS
TTCACCACCTCTTCCCAAGA+CGG 0.652418 1_1:-14596028 None:intergenic
CATGTAGGGAGAGATTACAT+AGG 0.659529 1_1:+14595812 Msa0009750:CDS
TGTCAAGCAAAGATCCATGT+CGG 0.659804 1_1:+14595399 Msa0009750:CDS
TTGCAAGAACACCAAGAACA+CGG 0.661960 1_1:-14596693 None:intergenic
GAGATTACATAGGATTGTGG+CGG 0.666518 1_1:+14595822 Msa0009750:CDS
GTCGTCCAAGCAAAACGGAG+AGG 0.666826 1_1:+14595530 Msa0009750:CDS
AGAGCCGTCTTGGGAAGAGG+TGG 0.668426 1_1:+14596024 Msa0009750:CDS
CAACCGGAGAATCCACTCGT+CGG 0.678394 1_1:-14595311 None:intergenic
GGAGAAGTATGGGAATGATG+GGG 0.682396 1_1:+14595852 Msa0009750:CDS
GCGATCGTTGTTGCAAACTG+TGG 0.686693 1_1:+14595994 Msa0009750:CDS
AGACCCTACGGTCCTAACCG+TGG 0.735113 1_1:-14595941 None:intergenic
GGTGTTTATGACGGCCACGG+TGG 0.745416 1_1:+14595772 Msa0009750:CDS
CCGCCACCTGAGCACCACCG+TGG 0.763925 1_1:-14595786 None:intergenic
CAAGAACACCAAGAACACGG+TGG 0.824774 1_1:-14596690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATATATAAAGAAAAA+TGG + chr1_1:14596216-14596235 Msa0009750:intron 10.0%
!! TATAGTTATAAATTACAATT+AGG - chr1_1:14596345-14596364 None:intergenic 10.0%
!! AAACAATTATTATTAAGAAT+AGG - chr1_1:14597374-14597393 None:intergenic 10.0%
!! AAGCATTAATGATTATTAAA+AGG + chr1_1:14597100-14597119 Msa0009750:intron 15.0%
!! AGCATTAATGATTATTAAAA+GGG + chr1_1:14597101-14597120 Msa0009750:intron 15.0%
!! ATTATTAAAAGGGTAATTAA+AGG + chr1_1:14597111-14597130 Msa0009750:intron 15.0%
!! TTAAATTCATTGAAGATTAT+TGG + chr1_1:14597315-14597334 Msa0009750:intron 15.0%
!!! TTTCATCTTTTATTATTTGC+AGG + chr1_1:14595612-14595631 Msa0009750:intron 20.0%
!!! ATAGATTTTACAATGAAAGA+TGG + chr1_1:14595730-14595749 Msa0009750:CDS 20.0%
!!! ATTCCATAGTACTAATTTTT+AGG + chr1_1:14596110-14596129 Msa0009750:intron 20.0%
!! GAAAAATGATAGAAAATTTC+AGG - chr1_1:14596396-14596415 None:intergenic 20.0%
!!! TATCATACAATAGTTTTCTT+TGG - chr1_1:14596566-14596585 None:intergenic 20.0%
!!! TAATTAATCAATGGATTTGT+TGG + chr1_1:14596807-14596826 Msa0009750:intron 20.0%
!!! TGGTTAATCAATTTTTTTTG+AGG + chr1_1:14596827-14596846 Msa0009750:intron 20.0%
!! TTGCATTGAAAAAAATTGAA+TGG - chr1_1:14597082-14597101 None:intergenic 20.0%
!!! AAAAGTTAGAACATTTTGTA+AGG - chr1_1:14597845-14597864 None:intergenic 20.0%
!!! GAAGCTTTTTTTTTTTTTGA+AGG - chr1_1:14598060-14598079 None:intergenic 20.0%
!!! TGATGACTATAATAGTTTTA+AGG + chr1_1:14598645-14598664 Msa0009750:three_prime_UTR 20.0%
!! TATTGTTAGCTTATTATACG+CGG + chr1_1:14595558-14595577 Msa0009750:intron 25.0%
! GTACCTAAAAATTAGTACTA+TGG - chr1_1:14596116-14596135 None:intergenic 25.0%
!! AAGAAAAATGGAAGTAGTTT+TGG + chr1_1:14596228-14596247 Msa0009750:intron 25.0%
! CTTAAATTCTCTCATAAAGA+GGG + chr1_1:14597012-14597031 Msa0009750:intron 25.0%
! TTAAATTCTCTCATAAAGAG+GGG + chr1_1:14597013-14597032 Msa0009750:intron 25.0%
! TCTATTAGATTCCTCTTTAT+GGG - chr1_1:14597192-14597211 None:intergenic 25.0%
! TTCTATTAGATTCCTCTTTA+TGG - chr1_1:14597193-14597212 None:intergenic 25.0%
! ATTCATTGAAGATTATTGGA+CGG + chr1_1:14597319-14597338 Msa0009750:intron 25.0%
!!! TTCAACACTTCATTTTTTCT+CGG - chr1_1:14597921-14597940 None:intergenic 25.0%
! ATAGTTAGAATGTGTTGAAT+TGG - chr1_1:14598291-14598310 None:intergenic 25.0%
! TATGAGAAATTCATCATCAT+TGG - chr1_1:14598393-14598412 None:intergenic 25.0%
!!! GATTTTTTCGGTGTTTATGA+CGG + chr1_1:14595763-14595782 Msa0009750:CDS 30.0%
!!! GTGTTTTGGTAAAATGGATA+GGG + chr1_1:14595903-14595922 Msa0009750:CDS 30.0%
!! AATTTTTGAAGACTAGTGTC+AGG + chr1_1:14596416-14596435 Msa0009750:intron 30.0%
! TAGTTGCTAGCTTATGATAA+TGG + chr1_1:14596770-14596789 Msa0009750:intron 30.0%
!! AAATGGCAAGAGTTTTTCAA+TGG - chr1_1:14596902-14596921 None:intergenic 30.0%
! CATCTCTGCTATTCTAAAAA+TGG - chr1_1:14596919-14596938 None:intergenic 30.0%
GCTTAAATTCTCTCATAAAG+AGG + chr1_1:14597011-14597030 Msa0009750:intron 30.0%
TTGAAAAAAATTGAATGGCC+AGG - chr1_1:14597077-14597096 None:intergenic 30.0%
TTAAAGGATCAGATTTACAC+TGG + chr1_1:14597127-14597146 Msa0009750:intron 30.0%
CTATTAGATTCCTCTTTATG+GGG - chr1_1:14597191-14597210 None:intergenic 30.0%
GATCATATACACAAAACATG+TGG - chr1_1:14597246-14597265 None:intergenic 30.0%
AATCCCACATAATCAAAGTT+TGG + chr1_1:14597498-14597517 Msa0009750:intron 30.0%
ATCCCACATAATCAAAGTTT+GGG + chr1_1:14597499-14597518 Msa0009750:intron 30.0%
TCGAGTTTAGTTAAAAACTC+AGG - chr1_1:14597964-14597983 None:intergenic 30.0%
! GATGTTTAACATTTTGAGCA+AGG - chr1_1:14598103-14598122 None:intergenic 30.0%
!! TCAGGTTTTGATATCACATA+TGG - chr1_1:14598350-14598369 None:intergenic 30.0%
!! TGAAGCATTTTCTTACAACT+TGG - chr1_1:14598463-14598482 None:intergenic 30.0%
GTTGTAAGAAAATGCTTCAA+AGG + chr1_1:14598464-14598483 Msa0009750:CDS 30.0%
AATGCTTCAAAGGTCAAATT+AGG + chr1_1:14598474-14598493 Msa0009750:CDS 30.0%
AAATTAGGAGAGTTTGTCAT+GGG + chr1_1:14598489-14598508 Msa0009750:CDS 30.0%
TAGATCTTAATGTTCCTCTT+AGG - chr1_1:14598616-14598635 None:intergenic 30.0%
!!! GTGTCGTTTCATGTTTTTCA+TGG - chr1_1:14595274-14595293 None:intergenic 35.0%
AAACATGAAACGACACTCAT+CGG + chr1_1:14595278-14595297 Msa0009750:CDS 35.0%
! AACATTCTCTAGCTTCGTAA+CGG - chr1_1:14595340-14595359 None:intergenic 35.0%
ACCGGAGAAGATTGAAAATT+CGG + chr1_1:14595361-14595380 Msa0009750:CDS 35.0%
! TCCGAATTTTCAATCTTCTC+CGG - chr1_1:14595365-14595384 None:intergenic 35.0%
TATGAGACACACTGTACTTA+AGG - chr1_1:14595589-14595608 None:intergenic 35.0%
!!! GGAGAGAAGTGTGATTTTTT+CGG + chr1_1:14595751-14595770 Msa0009750:CDS 35.0%
!!! GGTGTTTTGGTAAAATGGAT+AGG + chr1_1:14595902-14595921 Msa0009750:CDS 35.0%
! TTTTGGTAAAATGGATAGGG+AGG + chr1_1:14595906-14595925 Msa0009750:CDS 35.0%
GGATTTGTCAAGTGATCATA+AGG + chr1_1:14596056-14596075 Msa0009750:CDS 35.0%
GATCAATCTCAAACAGATCT+TGG + chr1_1:14596188-14596207 Msa0009750:intron 35.0%
AAAGTTTAGAAGTCTCTGCA+TGG - chr1_1:14596311-14596330 None:intergenic 35.0%
TCTATTCTCATCAACTCATC+AGG - chr1_1:14596637-14596656 None:intergenic 35.0%
TTGATGAGAATAGAAGAAGC+TGG + chr1_1:14596643-14596662 Msa0009750:CDS 35.0%
GGAAGAGTTATAAACTGGAA+TGG + chr1_1:14596667-14596686 Msa0009750:CDS 35.0%
AAGCAATGTGTCATCTTGAT+TGG - chr1_1:14596995-14597014 None:intergenic 35.0%
!! CGTTGATTTCAAAGAGCTTA+AGG + chr1_1:14597457-14597476 Msa0009750:intron 35.0%
CAAAGAGCTTAAGGTATACT+TGG + chr1_1:14597466-14597485 Msa0009750:intron 35.0%
CACCCAAACTTTGATTATGT+GGG - chr1_1:14597504-14597523 None:intergenic 35.0%
ACACCCAAACTTTGATTATG+TGG - chr1_1:14597505-14597524 None:intergenic 35.0%
TATTGTAACTTGATGCATGC+AGG + chr1_1:14598308-14598327 Msa0009750:intron 35.0%
TTTCTCATACTAGCAAGTGA+TGG + chr1_1:14598404-14598423 Msa0009750:CDS 35.0%
CAAATTAGGAGAGTTTGTCA+TGG + chr1_1:14598488-14598507 Msa0009750:CDS 35.0%
! ACTATTGTCTGAGATAGCAT+TGG + chr1_1:14598550-14598569 Msa0009750:CDS 35.0%
TGTCAAGCAAAGATCCATGT+CGG + chr1_1:14595399-14595418 Msa0009750:CDS 40.0%
TGTTGAGATATCGTTGTCGT+TGG + chr1_1:14595479-14595498 Msa0009750:CDS 40.0%
CATGTAGGGAGAGATTACAT+AGG + chr1_1:14595812-14595831 Msa0009750:CDS 40.0%
GGAGAGATTACATAGGATTG+TGG + chr1_1:14595819-14595838 Msa0009750:CDS 40.0%
GAGATTACATAGGATTGTGG+CGG + chr1_1:14595822-14595841 Msa0009750:CDS 40.0%
! TGGAGAAGTATGGGAATGAT+GGG + chr1_1:14595851-14595870 Msa0009750:CDS 40.0%
! GAATGATGGGGAATTTGAGT+GGG + chr1_1:14595864-14595883 Msa0009750:CDS 40.0%
!!! GGAAGGGTGTTTTGGTAAAA+TGG + chr1_1:14595897-14595916 Msa0009750:CDS 40.0%
TTGTTTGTACACAGCCAAAC+AGG + chr1_1:14596611-14596630 Msa0009750:intron 40.0%
ATGAGAATAGAAGAAGCTGG+TGG + chr1_1:14596646-14596665 Msa0009750:CDS 40.0%
CTGGTGGAAGAGTTATAAAC+TGG + chr1_1:14596662-14596681 Msa0009750:CDS 40.0%
TTGCAAGAACACCAAGAACA+CGG - chr1_1:14596696-14596715 None:intergenic 40.0%
TAACCAACCTATAGATCGTG+AGG - chr1_1:14596719-14596738 None:intergenic 40.0%
AATTCTCTCATAAAGAGGGG+AGG + chr1_1:14597016-14597035 Msa0009750:intron 40.0%
! TTGTTTCTTGTGTGTGCCTA+TGG + chr1_1:14597388-14597407 Msa0009750:intron 40.0%
ATTTCCACGTGTTTGACCAT+AGG - chr1_1:14597407-14597426 None:intergenic 40.0%
!! TCTGAGATAGCATTGGCAAA+GGG + chr1_1:14598557-14598576 Msa0009750:CDS 40.0%
GTCATAGTTGTTGACCTAAG+AGG + chr1_1:14598599-14598618 Msa0009750:CDS 40.0%
CGAAGCTAGAGAATGTTCAC+CGG + chr1_1:14595343-14595362 Msa0009750:CDS 45.0%
GCAAAGATCCATGTCGGAAA+TGG + chr1_1:14595405-14595424 Msa0009750:CDS 45.0%
GATCAGTCGTCCAAGCAAAA+CGG + chr1_1:14595525-14595544 Msa0009750:CDS 45.0%
!! ATGGTTCGGTGTCAACGATA+GGG + chr1_1:14595671-14595690 Msa0009750:CDS 45.0%
GATAGGGTGTAGGAAGGAAA+TGG + chr1_1:14595687-14595706 Msa0009750:CDS 45.0%
TAGGAAGGAAATGGAGGATG+CGG + chr1_1:14595696-14595715 Msa0009750:CDS 45.0%
ATTACATAGGATTGTGGCGG+AGG + chr1_1:14595825-14595844 Msa0009750:CDS 45.0%
! GTGGAGAAGTATGGGAATGA+TGG + chr1_1:14595850-14595869 Msa0009750:CDS 45.0%
! GGAGAAGTATGGGAATGATG+GGG + chr1_1:14595852-14595871 Msa0009750:CDS 45.0%
! GGAATGATGGGGAATTTGAG+TGG + chr1_1:14595863-14595882 Msa0009750:CDS 45.0%
ATTTGAGTGGGAGAGAGTGA+TGG + chr1_1:14595876-14595895 Msa0009750:CDS 45.0%
!!! AGAGTGATGGAAGGGTGTTT+TGG + chr1_1:14595889-14595908 Msa0009750:CDS 45.0%
TGGTAAAATGGATAGGGAGG+TGG + chr1_1:14595909-14595928 Msa0009750:CDS 45.0%
! AGCTGTAGCGGTTGTTGTTA+AGG + chr1_1:14595969-14595988 Msa0009750:CDS 45.0%
! TGTAGCGGTTGTTGTTAAGG+AGG + chr1_1:14595972-14595991 Msa0009750:CDS 45.0%
ATCAACTCATCAGGCCTGTT+TGG - chr1_1:14596628-14596647 None:intergenic 45.0%
CTTGCAACCTCACGATCTAT+AGG + chr1_1:14596709-14596728 Msa0009750:CDS 45.0%
CAACCTCACGATCTATAGGT+TGG + chr1_1:14596713-14596732 Msa0009750:intron 45.0%
CCACTGGAGAACACTTTAAC+AGG - chr1_1:14597051-14597070 None:intergenic 45.0%
! CCTGTTAAAGTGTTCTCCAG+TGG + chr1_1:14597048-14597067 Msa0009750:intron 45.0%
GCATCCAGTGAAATTCTCAC+TGG + chr1_1:14597153-14597172 Msa0009750:intron 45.0%
CTCTCCAGTGAGAATTTCAC+TGG - chr1_1:14597160-14597179 None:intergenic 45.0%
CAGTGAAATTCTCACTGGAG+AGG + chr1_1:14597158-14597177 Msa0009750:intron 45.0%
AGATTCCTCTTTATGGGGCA+TGG - chr1_1:14597186-14597205 None:intergenic 45.0%
CTCTTTGTCACAGTGACTTC+AGG - chr1_1:14598368-14598387 None:intergenic 45.0%
TACTAGCAAGTGATGGCTTG+TGG + chr1_1:14598411-14598430 Msa0009750:CDS 45.0%
! ACTAGCAAGTGATGGCTTGT+GGG + chr1_1:14598412-14598431 Msa0009750:CDS 45.0%
!! GTCTGAGATAGCATTGGCAA+AGG + chr1_1:14598556-14598575 Msa0009750:CDS 45.0%
!! ATAATTAATTAATTAATCAA+TGG + chr1_1:14596798-14596817 Msa0009750:intron 5.0%
!!! TTTTCAATTTTAAAATTATT+TGG + chr1_1:14597273-14597292 Msa0009750:intron 5.0%
! GTTGGCTTCGTCATCATCAG+AGG + chr1_1:14595497-14595516 Msa0009750:CDS 50.0%
TCCAAGCAAAACGGAGAGGT+AGG + chr1_1:14595534-14595553 Msa0009750:intron 50.0%
CAACAACGACCTCTATCGCA+TGG + chr1_1:14595652-14595671 Msa0009750:CDS 50.0%
ACGACCTCTATCGCATGGTT+CGG + chr1_1:14595657-14595676 Msa0009750:CDS 50.0%
!! CATGGTTCGGTGTCAACGAT+AGG + chr1_1:14595670-14595689 Msa0009750:CDS 50.0%
GTCAACGATAGGGTGTAGGA+AGG + chr1_1:14595681-14595700 Msa0009750:CDS 50.0%
AGGGTGTAGGAAGGAAATGG+AGG + chr1_1:14595690-14595709 Msa0009750:CDS 50.0%
!! TTCGGTGTTTATGACGGCCA+CGG + chr1_1:14595769-14595788 Msa0009750:CDS 50.0%
! AGTGGGAGAGAGTGATGGAA+GGG + chr1_1:14595881-14595900 Msa0009750:CDS 50.0%
AAAATGGATAGGGAGGTGGC+TGG + chr1_1:14595913-14595932 Msa0009750:CDS 50.0%
AACAACAACCGCTACAGCTG+CGG - chr1_1:14595968-14595987 None:intergenic 50.0%
GCGATCGTTGTTGCAAACTG+TGG + chr1_1:14595994-14596013 Msa0009750:CDS 50.0%
!! TGGTGATTCTAGAGCCGTCT+TGG + chr1_1:14596014-14596033 Msa0009750:CDS 50.0%
!! GGTGATTCTAGAGCCGTCTT+GGG + chr1_1:14596015-14596034 Msa0009750:CDS 50.0%
TTCACCACCTCTTCCCAAGA+CGG - chr1_1:14596031-14596050 None:intergenic 50.0%
CAAGAACACCAAGAACACGG+TGG - chr1_1:14596693-14596712 None:intergenic 50.0%
AGTGTTCTCCAGTGGAATCC+TGG + chr1_1:14597056-14597075 Msa0009750:intron 50.0%
TTGAATGGCCAGGATTCCAC+TGG - chr1_1:14597067-14597086 None:intergenic 50.0%
AGGATCCATGCCCCATAAAG+AGG + chr1_1:14597178-14597197 Msa0009750:intron 50.0%
TGTGCCTATGGTCAAACACG+TGG + chr1_1:14597400-14597419 Msa0009750:intron 50.0%
! CTAGCAAGTGATGGCTTGTG+GGG + chr1_1:14598413-14598432 Msa0009750:CDS 50.0%
GGAATCTTCTCTCCGACGAG+TGG + chr1_1:14595299-14595318 Msa0009750:CDS 55.0%
! TCTCCGACGAGTGGATTCTC+CGG + chr1_1:14595308-14595327 Msa0009750:CDS 55.0%
CAACCGGAGAATCCACTCGT+CGG - chr1_1:14595314-14595333 None:intergenic 55.0%
AGCTTCGTAACGGCTCCAAC+CGG - chr1_1:14595330-14595349 None:intergenic 55.0%
CATGTCGGAAATGGCTCCGA+CGG + chr1_1:14595414-14595433 Msa0009750:CDS 55.0%
GAAATGGCTCCGACGGTGAT+CGG + chr1_1:14595421-14595440 Msa0009750:CDS 55.0%
AAATGGCTCCGACGGTGATC+GGG + chr1_1:14595422-14595441 Msa0009750:CDS 55.0%
GTCGTCCAAGCAAAACGGAG+AGG + chr1_1:14595530-14595549 Msa0009750:CDS 55.0%
! GCCTACCTCTCCGTTTTGCT+TGG - chr1_1:14595538-14595557 None:intergenic 55.0%
GACACCGAACCATGCGATAG+AGG - chr1_1:14595664-14595683 None:intergenic 55.0%
! CGGTGTCAACGATAGGGTGT+AGG + chr1_1:14595677-14595696 Msa0009750:CDS 55.0%
AATGGAGGATGCGGTGAGTG+TGG + chr1_1:14595705-14595724 Msa0009750:CDS 55.0%
! ACATAGGATTGTGGCGGAGG+AGG + chr1_1:14595828-14595847 Msa0009750:CDS 55.0%
! CGGAGGAGGTGGAGAAGTAT+GGG + chr1_1:14595842-14595861 Msa0009750:CDS 55.0%
! GAGTGGGAGAGAGTGATGGA+AGG + chr1_1:14595880-14595899 Msa0009750:CDS 55.0%
ATGCCACGGTTAGGACCGTA+GGG + chr1_1:14595938-14595957 Msa0009750:CDS 55.0%
TACAGCTGCGGTAGACCCTA+CGG - chr1_1:14595956-14595975 None:intergenic 55.0%
! TCTAGAGCCGTCTTGGGAAG+AGG + chr1_1:14596021-14596040 Msa0009750:CDS 55.0%
GGGAAGAGGTGGTGAAGCTT+TGG + chr1_1:14596035-14596054 Msa0009750:CDS 55.0%
TGGAATGGCCACCGTGTTCT+TGG + chr1_1:14596682-14596701 Msa0009750:CDS 55.0%
! CGACGAGTGGATTCTCCGGT+TGG + chr1_1:14595312-14595331 Msa0009750:CDS 60.0%
CGTCGGAGCCATTTCCGACA+TGG - chr1_1:14595416-14595435 None:intergenic 60.0%
CTCCGACGGTGATCGGGAAA+CGG + chr1_1:14595428-14595447 Msa0009750:CDS 60.0%
CTCCGTTTCCCGATCACCGT+CGG - chr1_1:14595433-14595452 None:intergenic 60.0%
GGTGTTTATGACGGCCACGG+TGG + chr1_1:14595772-14595791 Msa0009750:CDS 60.0%
!! TCAGGTGGCGGAGGCATGTA+GGG + chr1_1:14595798-14595817 Msa0009750:CDS 60.0%
! TAGGATTGTGGCGGAGGAGG+TGG + chr1_1:14595831-14595850 Msa0009750:CDS 60.0%
GCGGAGGAGGTGGAGAAGTA+TGG + chr1_1:14595841-14595860 Msa0009750:CDS 60.0%
! TGGCTGGTGATGCCACGGTT+AGG + chr1_1:14595929-14595948 Msa0009750:CDS 60.0%
GATGCCACGGTTAGGACCGT+AGG + chr1_1:14595937-14595956 Msa0009750:CDS 60.0%
AGACCCTACGGTCCTAACCG+TGG - chr1_1:14595944-14595963 None:intergenic 60.0%
AGGGTCTACCGCAGCTGTAG+CGG + chr1_1:14595957-14595976 Msa0009750:CDS 60.0%
AGAGCCGTCTTGGGAAGAGG+TGG + chr1_1:14596024-14596043 Msa0009750:CDS 60.0%
!! CTCAGGTGGCGGAGGCATGT+AGG + chr1_1:14595797-14595816 Msa0009750:CDS 65.0%
! GGAGGTGGCTGGTGATGCCA+CGG + chr1_1:14595924-14595943 Msa0009750:CDS 65.0%
TGACGGCCACGGTGGTGCTC+AGG + chr1_1:14595780-14595799 Msa0009750:CDS 70.0%
CCACGGTGGTGCTCAGGTGG+CGG + chr1_1:14595786-14595805 Msa0009750:CDS 70.0%
CGGCCACGGTGGTGCTCAGG+TGG + chr1_1:14595783-14595802 Msa0009750:CDS 75.0%
CCGCCACCTGAGCACCACCG+TGG - chr1_1:14595789-14595808 None:intergenic 75.0%
! CGGTGGTGCTCAGGTGGCGG+AGG + chr1_1:14595789-14595808 Msa0009750:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 14595258 14598689 14595258 ID=Msa0009750;Name=Msa0009750
chr1_1 mRNA 14595258 14598689 14595258 ID=Msa0009750-mRNA-1;Parent=Msa0009750;Name=Msa0009750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|4|49|384
chr1_1 exon 14595258 14595551 14595258 ID=Msa0009750-mRNA-1:exon:5357;Parent=Msa0009750-mRNA-1
chr1_1 exon 14595634 14596077 14595634 ID=Msa0009750-mRNA-1:exon:5358;Parent=Msa0009750-mRNA-1
chr1_1 exon 14596625 14596730 14596625 ID=Msa0009750-mRNA-1:exon:5359;Parent=Msa0009750-mRNA-1
chr1_1 exon 14598330 14598689 14598330 ID=Msa0009750-mRNA-1:exon:5360;Parent=Msa0009750-mRNA-1
chr1_1 CDS 14595258 14595551 14595258 ID=Msa0009750-mRNA-1:cds;Parent=Msa0009750-mRNA-1
chr1_1 CDS 14595634 14596077 14595634 ID=Msa0009750-mRNA-1:cds;Parent=Msa0009750-mRNA-1
chr1_1 CDS 14596625 14596730 14596625 ID=Msa0009750-mRNA-1:cds;Parent=Msa0009750-mRNA-1
chr1_1 CDS 14598330 14598640 14598330 ID=Msa0009750-mRNA-1:cds;Parent=Msa0009750-mRNA-1
chr1_1 three_prime_UTR 14598641 14598689 14598641 ID=Msa0009750-mRNA-1:three_prime_utr;Parent=Msa0009750-mRNA-1
Gene Sequence

>Msa0009750

ATGCAAAAAACGACCATGAAAAACATGAAACGACACTCATCGGAATCTTCTCTCCGACGAGTGGATTCTCCGGTTGGAGCCGTTACGAAGCTAGAGAATGTTCACCGGAGAAGATTGAAAATTCGGAGAATGAAGTATAGTTGTCAAGCAAAGATCCATGTCGGAAATGGCTCCGACGGTGATCGGGAAACGGAGAATGAGCGTAGAGAGATTCATGAATCTGTTGAGATATCGTTGTCGTTGGCTTCGTCATCATCAGAGGAAGATGATCAGTCGTCCAAGCAAAACGGAGAGGTGAAGCATTATCAACAACAACAACGACCTCTATCGCATGGTTCGGTGTCAACGATAGGGTGTAGGAAGGAAATGGAGGATGCGGTGAGTGTGGAGATAGATTTTACAATGAAAGATGGAGAGAAGTGTGATTTTTTCGGTGTTTATGACGGCCACGGTGGTGCTCAGGTGGCGGAGGCATGTAGGGAGAGATTACATAGGATTGTGGCGGAGGAGGTGGAGAAGTATGGGAATGATGGGGAATTTGAGTGGGAGAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGGGAGGTGGCTGGTGATGCCACGGTTAGGACCGTAGGGTCTACCGCAGCTGTAGCGGTTGTTGTTAAGGAGGCGATCGTTGTTGCAAACTGTGGTGATTCTAGAGCCGTCTTGGGAAGAGGTGGTGAAGCTTTGGATTTGTCAAGTGATCATAAGCCAAACAGGCCTGATGAGTTGATGAGAATAGAAGAAGCTGGTGGAAGAGTTATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCAACCTCACGATCTATAGGAGATCAATATCTTCGACCATATGTGATATCAAAACCTGAAGTCACTGTGACAAAGAGAACCAATGATGATGAATTTCTCATACTAGCAAGTGATGGCTTGTGGGGTGTAATGTCTAGTAAAATTGCATGCCAAGTTGTAAGAAAATGCTTCAAAGGTCAAATTAGGAGAGTTTGTCATGGGAATGAGAATCAAAGTAATCGTGCTGCTGAAGCTGCAACACTATTGTCTGAGATAGCATTGGCAAAGGGTAGCAGAGACAATACAAGTGTCATAGTTGTTGACCTAAGAGGAACATTAAGATCTAGTTGA
Protein sequence

>Msa0009750

MQKTTMKNMKRHSSESSLRRVDSPVGAVTKLENVHRRRLKIRRMKYSCQAKIHVGNGSDGDRETENERREIHESVEISLSLASSSSEEDDQSSKQNGEVKHYQQQQRPLSHGSVSTIGCRKEMEDAVSVEIDFTMKDGEKCDFFGVYDGHGGAQVAEACRERLHRIVAEEVEKYGNDGEFEWERVMEGCFGKMDREVAGDATVRTVGSTAAVAVVVKEAIVVANCGDSRAVLGRGGEALDLSSDHKPNRPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRTNDDEFLILASDGLWGVMSSKIACQVVRKCFKGQIRRVCHGNENQSNRAAEAATLLSEIALAKGSRDNTSVIVVDLRGTLRSS*