AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343400 MtrunA17_Chr1g0158781 92.651 381 28 0 1 381 6 386 0.0 677
Msa0343400 MtrunA17_Chr5g0396731 55.477 283 115 5 107 378 72 354 6.63e-90 275
Msa0343400 MtrunA17_Chr3g0112291 49.383 324 128 9 81 375 60 376 1.31e-89 275
Msa0343400 MtrunA17_Chr4g0070871 47.239 326 136 7 87 377 182 506 4.26e-83 262
Msa0343400 MtrunA17_Chr1g0150781 49.051 316 119 8 99 375 232 544 2.08e-82 261
Msa0343400 MtrunA17_Chr3g0135961 46.729 321 126 7 99 376 223 541 5.67e-81 258
Msa0343400 MtrunA17_Chr2g0299981 42.663 368 156 9 57 376 177 537 5.26e-80 255
Msa0343400 MtrunA17_Chr5g0435721 52.174 276 104 5 108 361 193 462 1.96e-79 252
Msa0343400 MtrunA17_Chr8g0389921 46.599 294 128 5 106 375 147 435 2.23e-72 233
Msa0343400 MtrunA17_Chr1g0150451 39.416 274 139 7 102 372 72 321 2.46e-46 161
Msa0343400 MtrunA17_Chr3g0136711 38.889 270 138 7 106 372 33 278 1.52e-45 158
Msa0343400 MtrunA17_Chr1g0212961 38.235 272 133 9 106 372 94 335 1.52e-42 152
Msa0343400 MtrunA17_Chr3g0126511 37.037 270 143 7 106 372 93 338 2.11e-39 144
Msa0343400 MtrunA17_Chr3g0105371 36.330 267 148 7 115 378 95 342 2.30e-38 140
Msa0343400 MtrunA17_Chr3g0105351 36.502 263 147 7 115 375 71 315 2.58e-38 139
Msa0343400 MtrunA17_Chr5g0430481 36.090 266 144 7 115 375 131 375 1.19e-37 139
Msa0343400 MtrunA17_Chr1g0194191 31.755 359 199 12 43 374 10 349 3.90e-35 133
Msa0343400 MtrunA17_Chr4g0065141 32.292 288 151 11 106 372 84 348 2.37e-34 130
Msa0343400 MtrunA17_Chr5g0407161 32.517 286 148 9 106 372 84 343 2.94e-34 130
Msa0343400 MtrunA17_Chr3g0138281 33.447 293 154 11 99 372 73 343 5.88e-33 127
Msa0343400 MtrunA17_Chr4g0050381 34.783 253 126 7 134 376 55 278 8.60e-33 124
Msa0343400 MtrunA17_Chr2g0293811 31.690 284 161 9 109 374 63 331 2.25e-31 122
Msa0343400 MtrunA17_Chr5g0426141 33.858 254 135 8 129 375 55 282 5.34e-30 116
Msa0343400 MtrunA17_Chr1g0150071 29.607 331 162 11 106 381 22 336 7.75e-30 117
Msa0343400 MtrunA17_Chr3g0136811 30.514 331 159 10 106 381 22 336 1.36e-29 117
Msa0343400 MtrunA17_Chr8g0360351 35.521 259 134 8 120 372 48 279 1.59e-29 115
Msa0343400 MtrunA17_Chr2g0317021 33.716 261 144 7 119 375 98 333 1.06e-28 114
Msa0343400 MtrunA17_Chr4g0001761 31.231 333 151 12 106 380 22 334 8.36e-28 112
Msa0343400 MtrunA17_Chr4g0051661 33.051 236 132 6 140 372 183 395 2.55e-27 111
Msa0343400 MtrunA17_Chr1g0171571 34.483 290 145 12 104 375 383 645 2.59e-27 113
Msa0343400 MtrunA17_Chr3g0115851 32.000 250 143 7 130 375 56 282 6.00e-27 108
Msa0343400 MtrunA17_Chr2g0279151 33.333 276 154 10 105 375 31 281 1.77e-26 107
Msa0343400 MtrunA17_Chr3g0144111 34.167 240 110 9 140 372 27 225 2.71e-26 105
Msa0343400 MtrunA17_Chr6g0483411 32.068 237 137 8 115 330 52 285 1.13e-24 102
Msa0343400 MtrunA17_Chr1g0151781 31.667 240 126 8 121 325 52 288 3.03e-24 102
Msa0343400 MtrunA17_Chr3g0127091 29.206 315 161 14 105 377 58 352 1.19e-23 101
Msa0343400 MtrunA17_Chr4g0067711 32.883 222 113 6 140 325 91 312 3.57e-23 99.4
Msa0343400 MtrunA17_Chr2g0295401 31.364 220 115 7 142 325 94 313 5.18e-23 99.0
Msa0343400 MtrunA17_Chr1g0185141 30.216 278 132 10 149 374 171 438 3.11e-22 99.0
Msa0343400 MtrunA17_Chr4g0066371 29.818 275 137 11 140 376 86 342 6.96e-22 96.3
Msa0343400 MtrunA17_Chr3g0089721 31.179 263 121 12 116 327 38 291 5.32e-21 93.2
Msa0343400 MtrunA17_Chr1g0192421 33.333 222 112 9 140 325 89 310 8.76e-21 92.4
Msa0343400 MtrunA17_Chr4g0004971 30.962 239 121 10 121 318 61 296 9.53e-21 92.4
Msa0343400 MtrunA17_Chr3g0089711 30.798 263 122 12 116 327 38 291 1.78e-20 91.7
Msa0343400 MtrunA17_Chr8g0371321 29.845 258 137 8 110 326 47 301 4.54e-20 90.9
Msa0343400 MtrunA17_Chr1g0211251 27.875 287 169 8 87 335 26 312 6.28e-20 90.5
Msa0343400 MtrunA17_Chr1g0213351 25.797 345 184 10 87 374 25 354 9.55e-20 89.7
Msa0343400 MtrunA17_Chr1g0181901 29.075 227 125 5 135 325 71 297 1.75e-19 89.4
Msa0343400 MtrunA17_Chr1g0207571 28.826 281 150 9 140 374 61 337 2.90e-19 88.6
Msa0343400 MtrunA17_Chr7g0250061 30.342 234 123 6 140 335 76 307 4.79e-19 87.8
Msa0343400 MtrunA17_Chr2g0324061 29.249 253 128 8 121 325 74 323 8.36e-19 87.8
Msa0343400 MtrunA17_Chr7g0243571 30.709 254 123 10 121 325 75 324 8.71e-19 87.4
Msa0343400 MtrunA17_Chr7g0256751 29.297 256 134 9 110 326 44 291 2.21e-18 86.3
Msa0343400 MtrunA17_Chr7g0263281 26.042 288 165 6 135 378 66 349 2.63e-18 85.5
Msa0343400 MtrunA17_Chr3g0133801 29.555 247 143 8 141 374 67 295 9.08e-18 84.3
Msa0343400 MtrunA17_Chr2g0294291 26.042 288 149 10 110 349 51 322 1.51e-17 83.2
Msa0343400 MtrunA17_Chr7g0221691 29.861 288 139 14 99 325 84 369 1.58e-17 84.0
Msa0343400 MtrunA17_Chr1g0153671 29.555 247 143 8 141 374 66 294 2.57e-17 83.2
Msa0343400 MtrunA17_Chr7g0272061 30.736 231 115 9 140 325 91 321 4.57e-17 82.0
Msa0343400 MtrunA17_Chr1g0209451 28.986 276 156 11 118 374 43 297 7.69e-17 81.6
Msa0343400 MtrunA17_Chr7g0249421 31.959 194 113 5 150 325 152 344 1.84e-16 80.9
Msa0343400 MtrunA17_Chr2g0286951 28.315 279 144 10 140 380 87 347 6.98e-16 78.6
Msa0343400 MtrunA17_Chr4g0022171 28.740 254 129 8 121 325 80 330 8.41e-16 78.6
Msa0343400 MtrunA17_Chr1g0192471 30.108 279 155 11 115 374 40 297 1.96e-15 77.4
Msa0343400 MtrunA17_Chr7g0256771 28.195 266 140 9 102 326 37 292 2.38e-15 76.3
Msa0343400 MtrunA17_Chr1g0175381 26.733 303 180 11 83 349 28 324 7.12e-15 75.5
Msa0343400 MtrunA17_Chr8g0342431 29.365 252 109 8 140 325 86 334 9.55e-15 75.1
Msa0343400 MtrunA17_Chr7g0271971 28.881 277 161 10 115 374 40 297 1.05e-14 75.1
Msa0343400 MtrunA17_Chr7g0238501 23.958 288 170 9 140 378 263 550 1.48e-14 75.1
Msa0343400 MtrunA17_Chr7g0225501 29.644 253 139 11 141 374 87 319 3.55e-14 73.6
Msa0343400 MtrunA17_Chr3g0089691 34.810 158 68 6 203 327 50 205 5.20e-14 72.0
Msa0343400 MtrunA17_Chr4g0063111 28.514 249 141 8 108 325 48 290 2.05e-13 71.6
Msa0343400 MtrunA17_Chr5g0394181 25.887 282 164 9 115 374 339 597 5.82e-13 70.5
Msa0343400 MtrunA17_Chr4g0063051 27.615 239 133 10 110 327 36 255 4.70e-12 66.6
Msa0343400 MtrunA17_Chr4g0068971 33.566 143 74 5 238 374 104 231 2.51e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343400 AT2G29380.1 48.348 333 142 8 61 375 41 361 8.38e-90 275
Msa0343400 AT1G07430.1 47.664 321 115 6 104 375 118 434 3.22e-87 271
Msa0343400 AT3G11410.1 54.472 246 86 3 109 331 106 348 3.75e-83 259
Msa0343400 AT5G59220.1 55.328 244 86 4 108 333 112 350 2.05e-81 255
Msa0343400 AT4G26080.1 47.869 305 129 7 99 375 121 423 1.64e-79 251
Msa0343400 AT1G72770.4 46.505 329 118 9 99 376 182 503 1.80e-78 250
Msa0343400 AT1G72770.1 46.505 329 118 9 99 376 182 503 1.80e-78 250
Msa0343400 AT1G72770.3 46.505 329 118 9 99 376 182 503 1.80e-78 250
Msa0343400 AT1G17550.1 45.706 326 126 9 99 376 181 503 7.23e-78 249
Msa0343400 AT1G17550.2 45.706 326 126 9 99 376 181 503 7.23e-78 249
Msa0343400 AT5G57050.2 44.348 345 153 7 71 376 29 373 3.44e-77 243
Msa0343400 AT5G57050.1 47.697 304 126 7 105 376 111 413 6.83e-77 244
Msa0343400 AT5G51760.2 42.249 329 148 9 89 377 58 384 7.62e-68 219
Msa0343400 AT5G51760.1 42.249 329 148 9 89 377 88 414 2.03e-67 219
Msa0343400 AT5G59220.2 51.579 190 69 4 108 279 112 296 1.43e-50 172
Msa0343400 AT1G72770.2 47.964 221 74 7 99 279 182 401 1.56e-48 169
Msa0343400 AT1G72770.5 47.964 221 74 7 99 279 182 401 1.56e-48 169
Msa0343400 AT5G57050.3 49.254 201 78 6 105 283 111 309 3.06e-47 163
Msa0343400 AT5G10740.1 39.781 274 138 9 102 372 28 277 4.88e-46 161
Msa0343400 AT5G10740.2 39.781 274 138 9 102 372 28 277 4.88e-46 161
Msa0343400 AT4G31750.2 37.793 299 154 8 77 372 8 277 5.77e-46 160
Msa0343400 AT4G31750.1 37.793 299 154 8 77 372 8 277 8.30e-46 159
Msa0343400 AT4G31750.3 37.793 299 154 8 77 372 8 277 8.30e-46 159
Msa0343400 AT1G43900.1 38.519 270 138 7 106 372 122 366 9.09e-45 158
Msa0343400 AT5G24940.1 38.686 274 141 7 102 372 28 277 1.16e-44 160
Msa0343400 AT1G67820.2 44.037 218 115 4 109 325 86 297 1.17e-41 151
Msa0343400 AT1G67820.1 44.037 218 115 4 109 325 122 333 1.75e-41 151
Msa0343400 AT5G53140.1 37.455 275 141 8 106 375 100 348 1.71e-40 148
Msa0343400 AT5G53140.2 37.455 275 141 8 106 375 100 348 1.71e-40 148
Msa0343400 AT2G40180.1 37.828 267 150 6 115 378 136 389 4.65e-40 146
Msa0343400 AT1G07160.1 31.165 369 219 10 12 374 37 376 1.15e-39 145
Msa0343400 AT2G30020.1 38.783 263 143 7 115 375 147 393 4.61e-39 144
Msa0343400 AT3G51470.2 33.942 274 149 9 109 372 30 281 1.33e-35 133
Msa0343400 AT3G51470.1 34.182 275 147 10 109 372 74 325 1.84e-35 133
Msa0343400 AT3G62260.2 31.790 324 184 10 68 372 42 347 2.76e-35 133
Msa0343400 AT3G62260.1 33.569 283 154 9 109 372 79 346 3.07e-35 133
Msa0343400 AT2G33700.1 36.364 242 123 9 140 372 123 342 8.08e-35 132
Msa0343400 AT3G62260.3 35.366 246 131 8 140 372 27 257 4.62e-34 128
Msa0343400 AT2G25620.1 33.564 289 148 9 109 375 91 357 1.42e-32 126
Msa0343400 AT2G25620.2 33.564 289 148 9 109 375 91 357 1.42e-32 126
Msa0343400 AT1G78200.5 33.597 253 138 6 130 375 9 238 1.11e-30 117
Msa0343400 AT1G78200.4 33.597 253 138 6 130 375 9 238 1.11e-30 117
Msa0343400 AT1G78200.1 33.597 253 138 6 130 375 54 283 2.96e-30 117
Msa0343400 AT1G78200.3 33.597 253 138 6 130 375 54 283 2.96e-30 117
Msa0343400 AT1G78200.2 33.597 253 138 6 130 375 54 283 2.96e-30 117
Msa0343400 AT1G48040.1 35.336 283 149 10 109 372 80 347 5.16e-30 119
Msa0343400 AT3G15260.2 32.595 316 174 10 65 375 8 289 8.20e-30 116
Msa0343400 AT3G15260.1 32.595 316 174 10 65 375 8 289 8.20e-30 116
Msa0343400 AT2G25070.1 29.846 325 157 11 106 375 22 330 2.26e-29 117
Msa0343400 AT2G25070.2 29.846 325 157 11 106 375 22 330 2.26e-29 117
Msa0343400 AT4G31860.3 32.959 267 119 7 106 319 22 281 3.95e-29 115
Msa0343400 AT1G34750.2 33.466 251 138 7 130 375 56 282 5.30e-29 114
Msa0343400 AT1G34750.1 33.466 251 138 7 130 375 56 282 5.30e-29 114
Msa0343400 AT1G34750.3 33.466 251 138 7 130 375 56 282 5.30e-29 114
Msa0343400 AT4G31860.1 32.959 267 119 7 106 319 22 281 1.02e-28 115
Msa0343400 AT1G22280.3 33.071 254 143 8 129 375 54 287 2.06e-28 112
Msa0343400 AT2G34740.1 31.408 277 160 9 103 374 83 334 2.34e-28 114
Msa0343400 AT4G31860.2 32.950 261 115 7 106 313 22 275 1.20e-27 110
Msa0343400 AT2G40860.4 34.507 284 147 10 106 375 293 551 1.38e-27 114
Msa0343400 AT2G40860.1 34.859 284 146 10 106 375 391 649 1.52e-27 114
Msa0343400 AT3G17250.1 29.282 362 193 12 46 372 58 391 5.97e-27 111
Msa0343400 AT1G22280.1 32.283 254 139 8 129 375 54 281 6.56e-27 108
Msa0343400 AT4G28400.3 31.154 260 150 7 120 375 27 261 2.21e-26 106
Msa0343400 AT4G32950.1 32.509 283 155 11 92 352 26 294 3.74e-26 107
Msa0343400 AT4G28400.1 31.154 260 150 7 120 375 49 283 4.57e-26 106
Msa0343400 AT4G27800.1 28.662 314 158 10 105 374 57 348 5.96e-26 108
Msa0343400 AT4G11040.1 30.576 278 127 9 108 380 79 295 3.13e-25 104
Msa0343400 AT5G26010.1 33.088 272 147 11 80 319 9 277 8.55e-25 103
Msa0343400 AT2G40860.2 34.310 239 133 7 106 330 391 619 1.02e-24 106
Msa0343400 AT1G34750.4 35.602 191 110 6 130 315 56 238 4.29e-24 100
Msa0343400 AT2G20630.1 31.128 257 148 7 120 372 45 276 4.36e-24 100
Msa0343400 AT5G66080.1 29.552 335 189 10 91 380 30 362 9.29e-24 101
Msa0343400 AT3G16800.2 33.333 222 116 9 136 326 89 309 9.75e-24 101
Msa0343400 AT3G16800.1 33.333 222 116 9 136 326 89 309 9.75e-24 101
Msa0343400 AT3G16800.3 33.333 222 116 9 136 326 89 309 9.75e-24 101
Msa0343400 AT2G20630.2 30.859 256 148 7 120 371 45 275 2.38e-23 99.0
Msa0343400 AT4G28400.2 34.000 200 119 6 120 315 49 239 9.66e-23 96.7
Msa0343400 AT3G16800.4 33.023 215 112 9 143 326 1 214 1.37e-22 96.3
Msa0343400 AT3G16800.6 33.023 215 112 9 143 326 1 214 1.37e-22 96.3
Msa0343400 AT4G33920.1 29.290 338 172 13 90 374 15 338 1.50e-22 98.2
Msa0343400 AT3G51370.1 29.965 287 159 7 89 335 26 310 1.72e-22 98.2
Msa0343400 AT3G51370.3 29.965 287 159 7 89 335 26 310 1.72e-22 98.2
Msa0343400 AT5G02760.1 28.889 270 140 9 110 335 40 301 2.10e-22 97.8
Msa0343400 AT4G27800.3 28.881 277 145 9 105 337 57 325 4.43e-22 96.3
Msa0343400 AT4G27800.2 28.881 277 145 9 105 337 57 325 4.83e-22 96.3
Msa0343400 AT4G08260.1 32.766 235 113 8 141 375 20 209 4.99e-22 93.6
Msa0343400 AT3G55050.1 25.714 350 210 10 74 377 16 361 5.71e-22 96.7
Msa0343400 AT3G55050.2 25.714 350 210 10 74 377 16 361 5.71e-22 96.7
Msa0343400 AT4G32950.2 32.510 243 137 10 92 312 26 263 5.74e-22 95.1
Msa0343400 AT1G18030.1 31.250 240 135 9 115 330 82 315 1.49e-21 95.1
Msa0343400 AT2G34740.2 30.631 222 140 7 103 319 97 309 5.94e-21 92.8
Msa0343400 AT2G34740.3 30.631 222 140 7 103 319 79 291 6.90e-21 92.4
Msa0343400 AT2G20050.2 31.474 251 119 11 118 327 123 361 8.55e-21 95.1
Msa0343400 AT2G20050.1 31.474 251 119 11 118 327 123 361 9.91e-21 94.7
Msa0343400 AT1G18030.2 31.556 225 124 9 115 315 82 300 6.90e-20 89.7
Msa0343400 AT3G12620.2 27.437 277 137 7 110 335 51 314 7.49e-20 90.5
Msa0343400 AT3G12620.1 27.437 277 137 7 110 335 51 314 7.49e-20 90.5
Msa0343400 AT5G27930.1 33.632 223 111 7 140 325 92 314 1.21e-19 89.7
Msa0343400 AT5G27930.2 33.632 223 111 7 140 325 92 314 1.21e-19 89.7
Msa0343400 AT3G17090.1 27.974 311 178 11 110 380 60 364 2.09e-19 89.4
Msa0343400 AT4G38520.2 30.380 237 111 6 135 326 76 303 2.46e-19 89.4
Msa0343400 AT4G38520.1 30.380 237 111 6 135 326 76 303 2.46e-19 89.4
Msa0343400 AT1G03590.1 30.159 252 126 8 121 325 74 322 3.50e-19 89.4
Msa0343400 AT5G01700.1 31.405 242 130 9 121 328 12 251 5.88e-19 87.4
Msa0343400 AT1G47380.1 29.283 321 179 12 68 374 7 293 7.86e-19 88.2
Msa0343400 AT5G01700.2 31.405 242 130 9 121 328 61 300 1.20e-18 87.0
Msa0343400 AT3G17090.2 28.740 254 139 8 110 327 60 307 1.78e-18 85.9
Msa0343400 AT3G63320.2 29.752 242 108 8 190 378 69 301 6.66e-18 84.7
Msa0343400 AT5G66080.2 31.667 240 124 8 179 380 21 258 1.20e-17 82.8
Msa0343400 AT1G09160.2 31.452 248 137 9 141 374 69 297 1.91e-17 84.0
Msa0343400 AT1G09160.1 31.452 248 137 9 141 374 69 297 1.91e-17 84.0
Msa0343400 AT2G40860.3 33.023 215 120 7 106 306 391 595 2.20e-17 84.3
Msa0343400 AT3G63320.1 31.224 237 111 8 190 378 152 384 2.60e-17 83.6
Msa0343400 AT3G63340.6 31.222 221 102 6 204 378 233 449 4.35e-17 83.6
Msa0343400 AT3G63340.3 31.222 221 102 6 204 378 233 449 4.35e-17 83.6
Msa0343400 AT3G63340.10 31.222 221 102 6 204 378 233 449 4.35e-17 83.6
Msa0343400 AT3G63340.4 31.222 221 102 6 204 378 233 449 4.35e-17 83.6
Msa0343400 AT3G63340.8 31.222 221 102 6 204 378 233 449 5.19e-17 83.6
Msa0343400 AT3G63340.5 31.222 221 102 6 204 378 233 449 5.33e-17 83.6
Msa0343400 AT3G63340.1 31.222 221 102 6 204 378 233 449 5.33e-17 83.6
Msa0343400 AT3G63340.7 31.222 221 102 6 204 378 233 449 5.38e-17 83.6
Msa0343400 AT1G68410.4 30.952 252 133 11 141 374 74 302 5.38e-17 82.4
Msa0343400 AT1G68410.3 30.952 252 133 11 141 374 74 302 5.38e-17 82.4
Msa0343400 AT1G68410.1 30.952 252 133 11 141 374 74 302 5.38e-17 82.4
Msa0343400 AT1G68410.2 30.952 252 133 11 141 374 74 302 5.38e-17 82.4
Msa0343400 AT3G63340.11 31.222 221 102 6 204 378 233 449 5.42e-17 83.2
Msa0343400 AT3G02750.2 36.943 157 81 5 187 325 197 353 5.79e-17 82.8
Msa0343400 AT3G02750.1 36.943 157 81 5 187 325 197 353 5.79e-17 82.8
Msa0343400 AT4G03415.1 29.804 255 126 8 121 325 81 332 5.97e-17 82.4
Msa0343400 AT4G03415.3 29.804 255 126 8 121 325 81 332 5.97e-17 82.4
Msa0343400 AT4G03415.2 29.804 255 126 8 121 325 81 332 5.97e-17 82.4
Msa0343400 AT4G33920.2 32.773 238 104 10 184 374 27 255 6.04e-17 80.9
Msa0343400 AT3G63340.12 31.222 221 102 6 204 378 233 449 6.13e-17 82.8
Msa0343400 AT5G06750.3 27.719 285 148 9 100 338 48 320 7.15e-17 82.0
Msa0343400 AT5G06750.1 27.719 285 148 9 100 338 48 320 7.15e-17 82.0
Msa0343400 AT4G33920.3 32.609 230 100 9 192 374 4 225 3.13e-16 78.6
Msa0343400 AT3G06270.1 25.510 294 165 9 118 375 68 343 1.16e-15 77.8
Msa0343400 AT3G63340.2 37.415 147 85 4 235 378 340 482 1.29e-15 79.3
Msa0343400 AT3G05640.2 32.159 227 119 10 134 325 83 309 1.40e-15 77.8
Msa0343400 AT3G05640.1 32.159 227 119 10 134 325 83 309 1.40e-15 77.8
Msa0343400 AT3G05640.3 32.159 227 119 10 134 325 83 309 1.40e-15 77.8
Msa0343400 AT5G19280.1 29.433 282 163 11 115 378 318 581 1.46e-15 78.6
Msa0343400 AT1G79630.6 36.957 138 71 3 204 325 112 249 1.56e-15 77.8
Msa0343400 AT1G79630.3 36.957 138 71 3 204 325 112 249 1.56e-15 77.8
Msa0343400 AT1G79630.4 36.957 138 71 3 204 325 112 249 1.56e-15 77.8
Msa0343400 AT1G79630.5 36.957 138 71 3 204 325 112 249 1.56e-15 77.8
Msa0343400 AT1G79630.2 36.957 138 71 3 204 325 152 289 1.75e-15 78.2
Msa0343400 AT1G79630.7 36.957 138 71 3 204 325 152 289 1.75e-15 78.2
Msa0343400 AT1G79630.8 36.957 138 71 3 204 325 218 355 1.87e-15 78.2
Msa0343400 AT1G79630.1 36.957 138 71 3 204 325 222 359 1.90e-15 78.2
Msa0343400 AT3G51370.2 32.984 191 92 5 179 335 37 225 1.91e-15 76.6
Msa0343400 AT5G36250.1 32.692 156 87 4 190 327 191 346 1.95e-14 74.7
Msa0343400 AT2G05050.1 28.511 235 104 8 141 375 20 190 2.92e-13 68.6
Msa0343400 AT5G19280.2 28.425 292 163 12 115 378 318 591 4.10e-13 71.2
Msa0343400 AT5G06750.2 30.890 191 96 5 184 338 48 238 6.04e-13 69.3
Msa0343400 AT5G36250.3 32.484 157 83 6 190 328 191 342 1.26e-11 65.9
Msa0343400 AT5G36250.2 30.000 170 87 5 190 327 191 360 2.04e-11 65.5
Msa0343400 AT1G22280.2 31.507 146 85 6 129 269 54 189 4.79e-11 62.0

Find 111 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGAGGAGGTGGAGAAGTA+TGG 0.235504 3_1:+1485390 Msa0343400:CDS
CTCTTTGTCACAGTGACTTC+AGG 0.244276 3_1:-1487915 None:intergenic
AATGCTTCAAAGGTCAAATT+AGG 0.290408 3_1:+1488024 Msa0343400:CDS
ATCAACTCATCAGGCCTGTT+TGG 0.331017 3_1:-1486380 None:intergenic
CTCAGGTGGCGGAGGCGTGT+AGG 0.336620 3_1:+1485346 Msa0343400:CDS
CTTGCAACCTCACGATCTAT+AGG 0.347379 3_1:+1486464 Msa0343400:CDS
AATGTTAACTTGTGCTCTTA+AGG 0.355420 3_1:+1488220 Msa0343400:three_prime_UTR
GTGTCGTTTCATGTTCTTCA+TGG 0.355665 3_1:-1484814 None:intergenic
TAGATCTTAATGTTCCTCTT+AGG 0.358874 3_1:-1488163 None:intergenic
TGGCTCCGACGACGGTGGTT+TGG 0.368726 3_1:+1484968 Msa0343400:CDS
ACCGGAGAAGGTTGAAAATT+CGG 0.382435 3_1:+1484904 Msa0343400:CDS
GGGAAGAGGTGGTGAAGCTT+TGG 0.383271 3_1:+1485584 Msa0343400:CDS
TATGAGAAATTCATCATCAT+TGG 0.394383 3_1:-1487940 None:intergenic
AGAGTGATGGAAGGGTGTTT+TGG 0.394683 3_1:+1485438 Msa0343400:CDS
TGGAATGGCCACCGTGTTCT+TGG 0.396208 3_1:+1486437 Msa0343400:CDS
CTGGTGGAAGAGTTATAAAC+TGG 0.397688 3_1:+1486417 Msa0343400:CDS
TGCTGTGGCGGTTGTTGTTA+AGG 0.400546 3_1:+1485518 Msa0343400:CDS
GGATTTGTCAAGTGATCATA+AGG 0.404582 3_1:+1485605 Msa0343400:CDS
GCAAAGATCCACGTCGGAAA+TGG 0.405131 3_1:+1484948 Msa0343400:CDS
GTGGAGAAGTATGGGAATGA+TGG 0.407900 3_1:+1485399 Msa0343400:CDS
TTGTTTGTCCACAGCCAAAC+AGG 0.412814 3_1:+1486366 Msa0343400:intron
TCTATTCTCATCAACTCATC+AGG 0.424557 3_1:-1486389 None:intergenic
TAGGATTGTGGCGGAGGAGG+TGG 0.460409 3_1:+1485380 Msa0343400:CDS
TCATGGTGGTGCTCAGGTGG+CGG 0.466235 3_1:+1485335 Msa0343400:CDS
TGGCGGGTGATGCCGCGGTT+AGG 0.472797 3_1:+1485478 Msa0343400:CDS
CGGAGGAGGTGGAGAAGTAT+GGG 0.475067 3_1:+1485391 Msa0343400:CDS
TGGTGATTCTAGAGCCGTCT+TGG 0.475428 3_1:+1485563 Msa0343400:CDS
GATGCCGCGGTTAGGACCGT+GGG 0.477926 3_1:+1485486 Msa0343400:CDS
TGGAGAAGTATGGGAATGAT+GGG 0.480508 3_1:+1485400 Msa0343400:CDS
GATAGGGTGTAGGAAGGAAA+TGG 0.481470 3_1:+1485236 Msa0343400:CDS
AGCTTCGTAACGGCTCCAAC+CGG 0.483069 3_1:-1484870 None:intergenic
TTCGGTGTTTATGACGGTCA+TGG 0.483965 3_1:+1485318 Msa0343400:CDS
GGAGAGAAGTGTGATTTCTT+CGG 0.486877 3_1:+1485300 Msa0343400:CDS
ACTAGCAAGTGATGGCTTGT+GGG 0.496581 3_1:+1487962 Msa0343400:CDS
CATGGTTCGGTGTCAACGAT+AGG 0.497255 3_1:+1485219 Msa0343400:CDS
TACTAGCAAGTGATGGCTTG+TGG 0.499391 3_1:+1487961 Msa0343400:CDS
GTCATAGTTGTTGACCTAAG+AGG 0.501868 3_1:+1488149 Msa0343400:CDS
TGGTGGTGCTCAGGTGGCGG+AGG 0.505538 3_1:+1485338 Msa0343400:CDS
ATTTGAGTGGGAGAGAGTGA+TGG 0.507256 3_1:+1485425 Msa0343400:CDS
GACACCGAACCATGCGATAG+AGG 0.509597 3_1:-1485210 None:intergenic
ACATAGGATTGTGGCGGAGG+AGG 0.510112 3_1:+1485377 Msa0343400:CDS
TCAGGTGGCGGAGGCGTGTA+GGG 0.513031 3_1:+1485347 Msa0343400:CDS
TAGAGAATGTTCACCGGAGA+AGG 0.514943 3_1:+1484892 Msa0343400:CDS
TAAAATGGATAGAGAGGTGG+CGG 0.517560 3_1:+1485461 Msa0343400:CDS
GTTAGCAACTTCGTCATCAT+CGG 0.518010 3_1:+1485043 Msa0343400:CDS
TCTAGAGCCGTCTTGGGAAG+AGG 0.518511 3_1:+1485570 Msa0343400:CDS
GTTGTAAGAAAATGCTTCAA+AGG 0.519484 3_1:+1488014 Msa0343400:CDS
GGTGATTCTAGAGCCGTCTT+GGG 0.523572 3_1:+1485564 Msa0343400:CDS
ATTACATAGGATTGTGGCGG+AGG 0.524499 3_1:+1485374 Msa0343400:CDS
TGACGGTCATGGTGGTGCTC+AGG 0.528135 3_1:+1485329 Msa0343400:CDS
CGACGAGTGGATTCTCCGGT+TGG 0.528374 3_1:+1484855 Msa0343400:CDS
AATGGAGGATGCAGTGAGTG+TGG 0.528815 3_1:+1485254 Msa0343400:CDS
GTCGGAAATGGCTCCGACGA+CGG 0.531145 3_1:+1484960 Msa0343400:CDS
CGGTCATGGTGGTGCTCAGG+TGG 0.536858 3_1:+1485332 Msa0343400:CDS
TGATGCCGCGGTTAGGACCG+TGG 0.537553 3_1:+1485485 Msa0343400:CDS
GCGTAGAGAGATTCATGAAT+CGG 0.543819 3_1:+1485004 Msa0343400:CDS
GGAATCTTCTCTCCGACGAG+TGG 0.547552 3_1:+1484842 Msa0343400:CDS
ATGGTTCGGTGTCAACGATA+GGG 0.549454 3_1:+1485220 Msa0343400:CDS
ACGACCTCTATCGCATGGTT+CGG 0.550841 3_1:+1485206 Msa0343400:CDS
GTCTGAGATAGCATTGGCAA+AGG 0.555565 3_1:+1488106 Msa0343400:CDS
GAACATGAAACGACACTCAT+CGG 0.557105 3_1:+1484821 Msa0343400:CDS
GATTTCTTCGGTGTTTATGA+CGG 0.557309 3_1:+1485312 Msa0343400:CDS
AAATTAGGAGAGTTTGTCGT+GGG 0.567260 3_1:+1488039 Msa0343400:CDS
GATCAGTCATCCAAGCAAAA+CGG 0.570060 3_1:+1485074 Msa0343400:CDS
TCTCCGACGAGTGGATTCTC+CGG 0.570803 3_1:+1484851 Msa0343400:CDS
TCTGAGATAGCATTGGCAAA+GGG 0.577103 3_1:+1488107 Msa0343400:CDS
GGGGTCTACCGCTGCTGTGG+CGG 0.577207 3_1:+1485506 Msa0343400:CDS
GGAAGAGTTATAAACTGGAA+TGG 0.578243 3_1:+1486422 Msa0343400:CDS
CGGTGTCAACGATAGGGTGT+AGG 0.578460 3_1:+1485226 Msa0343400:CDS
CGTGGGGTCTACCGCTGCTG+TGG 0.581113 3_1:+1485503 Msa0343400:CDS
TTGATGAGAATAGAAGAAGC+TGG 0.583873 3_1:+1486398 Msa0343400:CDS
AGCAACTTCGTCATCATCGG+AGG 0.586546 3_1:+1485046 Msa0343400:CDS
AGAGGTGGCGGGTGATGCCG+CGG 0.588922 3_1:+1485473 Msa0343400:CDS
TTTCTCATACTAGCAAGTGA+TGG 0.589407 3_1:+1487954 Msa0343400:CDS
GAGTGGGAGAGAGTGATGGA+AGG 0.592483 3_1:+1485429 Msa0343400:CDS
GGAATGATGGGGAATTTGAG+TGG 0.595276 3_1:+1485412 Msa0343400:CDS
AGGGTGTAGGAAGGAAATGG+AGG 0.598498 3_1:+1485239 Msa0343400:CDS
ACTATTGTCTGAGATAGCAT+TGG 0.602546 3_1:+1488100 Msa0343400:CDS
AACATTCTCTAGCTTCGTAA+CGG 0.604268 3_1:-1484880 None:intergenic
CACAGCAGCGGTAGACCCCA+CGG 0.604976 3_1:-1485502 None:intergenic
GGAAAGATTACATAGGATTG+TGG 0.607518 3_1:+1485368 Msa0343400:CDS
TGGTAAAATGGATAGAGAGG+TGG 0.611264 3_1:+1485458 Msa0343400:CDS
AGTTTCCAAACCACCGTCGT+CGG 0.615577 3_1:-1484973 None:intergenic
CGTGTAGGGAAAGATTACAT+AGG 0.617217 3_1:+1485361 Msa0343400:CDS
CGTCGGAGCCATTTCCGACG+TGG 0.626743 3_1:-1484956 None:intergenic
ATGAGAATAGAAGAAGCTGG+TGG 0.630044 3_1:+1486401 Msa0343400:CDS
CTAGCAAGTGATGGCTTGTG+GGG 0.633102 3_1:+1487963 Msa0343400:CDS
AGTGGGAGAGAGTGATGGAA+GGG 0.635076 3_1:+1485430 Msa0343400:CDS
AACAACAACCGCCACAGCAG+CGG 0.638398 3_1:-1485514 None:intergenic
GAATGATGGGGAATTTGAGT+GGG 0.638753 3_1:+1485413 Msa0343400:CDS
CAACGACGACCTCTATCGCA+TGG 0.639230 3_1:+1485201 Msa0343400:CDS
GTCAACGATAGGGTGTAGGA+AGG 0.646408 3_1:+1485230 Msa0343400:CDS
TAACCAACCTATAGATCGTG+AGG 0.647099 3_1:-1486471 None:intergenic
CGAAGCTAGAGAATGTTCAC+CGG 0.650904 3_1:+1484886 Msa0343400:CDS
GGAAATGGCTCCGACGACGG+TGG 0.651530 3_1:+1484963 Msa0343400:CDS
TTCACCACCTCTTCCCAAGA+CGG 0.652418 3_1:-1485577 None:intergenic
TTGCAAGAACACCAAGAACA+CGG 0.661960 3_1:-1486448 None:intergenic
CAAATTAGGAGAGTTTGTCG+TGG 0.666129 3_1:+1488038 Msa0343400:CDS
GTCATCCAAGCAAAACGGAG+AGG 0.668288 3_1:+1485079 Msa0343400:CDS
AGAGCCGTCTTGGGAAGAGG+TGG 0.668426 3_1:+1485573 Msa0343400:CDS
AAGATTACATAGGATTGTGG+CGG 0.672565 3_1:+1485371 Msa0343400:CDS
AAAATGGATAGAGAGGTGGC+GGG 0.676392 3_1:+1485462 Msa0343400:CDS
CAACCGGAGAATCCACTCGT+CGG 0.678394 3_1:-1484854 None:intergenic
GGAGAAGTATGGGAATGATG+GGG 0.682396 3_1:+1485401 Msa0343400:CDS
GCGATCGTTGTTGCAAACTG+TGG 0.686693 3_1:+1485543 Msa0343400:CDS
TGTGGCGGTTGTTGTTAAGG+AGG 0.690043 3_1:+1485521 Msa0343400:CDS
AGACCCCACGGTCCTAACCG+CGG 0.692037 3_1:-1485490 None:intergenic
ATGCCGCGGTTAGGACCGTG+GGG 0.731612 3_1:+1485487 Msa0343400:CDS
TGTCAAGCAAAGATCCACGT+CGG 0.732864 3_1:+1484942 Msa0343400:CDS
GGTGTTTATGACGGTCATGG+TGG 0.734025 3_1:+1485321 Msa0343400:CDS
CAAGAACACCAAGAACACGG+TGG 0.824774 3_1:-1486445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATATATAAAGAAAAA+TGG + chr3_1:1485765-1485784 Msa0343400:intron 10.0%
!! TATAGTTATAAATTACAATT+AGG - chr3_1:1485920-1485939 None:intergenic 10.0%
!! AAACAATTATTATTAAGAAT+AGG - chr3_1:1486962-1486981 None:intergenic 10.0%
!!! TATTGTTAGCTTATTATATT+CGG + chr3_1:1485107-1485126 Msa0343400:intron 15.0%
!!! AATATCTATAATTGTTTTTG+AGG + chr3_1:1485831-1485850 Msa0343400:intron 15.0%
!!! ATATCTATAATTGTTTTTGA+GGG + chr3_1:1485832-1485851 Msa0343400:intron 15.0%
!! TTAAATTCATTGAAGATTAT+TGG + chr3_1:1486903-1486922 Msa0343400:intron 15.0%
!! TCGATTTAATTAGTTATTTA+TGG - chr3_1:1487722-1487741 None:intergenic 15.0%
!!! ATTCCATAGTACTAATTTTT+AGG + chr3_1:1485659-1485678 Msa0343400:intron 20.0%
!!! TATCTATAATTGTTTTTGAG+GGG + chr3_1:1485833-1485852 Msa0343400:intron 20.0%
!! GAAAAATGATAGAAAATTTC+AGG - chr3_1:1485971-1485990 None:intergenic 20.0%
!!! CCAAAGTTTTAAATAAATAC+TGG - chr3_1:1486078-1486097 None:intergenic 20.0%
!!! CCAGTATTTATTTAAAACTT+TGG + chr3_1:1486075-1486094 Msa0343400:intron 20.0%
!!! TATCATACAATAGTTTTCTT+TGG - chr3_1:1486321-1486340 None:intergenic 20.0%
!!! TAATTAATCAATGGATTTGT+TGG + chr3_1:1486562-1486581 Msa0343400:intron 20.0%
!!! TGGTTAATCAATTTTTTTTG+AGG + chr3_1:1486582-1486601 Msa0343400:intron 20.0%
!!! GGTTAATCAATTTTTTTTGA+GGG + chr3_1:1486583-1486602 Msa0343400:intron 20.0%
!!! AAAAGTTAGAACATTTTGTA+AGG - chr3_1:1487433-1487452 None:intergenic 20.0%
! TTTCATCGTTTATTATTTGC+AGG + chr3_1:1485161-1485180 Msa0343400:intron 25.0%
! GTACCTAAAAATTAGTACTA+TGG - chr3_1:1485665-1485684 None:intergenic 25.0%
!! AAGAAAAATGGAAGTAGTTT+TGG + chr3_1:1485777-1485796 Msa0343400:intron 25.0%
! TGATCAACACATGATTAATA+AGG - chr3_1:1486118-1486137 None:intergenic 25.0%
!! ATGTGTTGATCAGTATTATT+TGG + chr3_1:1486126-1486145 Msa0343400:intron 25.0%
! ATTCATTGAAGATTATTGGA+CGG + chr3_1:1486907-1486926 Msa0343400:intron 25.0%
!!! TTCAACACTTCATTTTTTCT+CGG - chr3_1:1487509-1487528 None:intergenic 25.0%
!!! AATTTTTAAGGTTTTGAGCA+AGG - chr3_1:1487654-1487673 None:intergenic 25.0%
! ATAGTTAGAGCATATTGAAT+TGG - chr3_1:1487842-1487861 None:intergenic 25.0%
! TATGAGAAATTCATCATCAT+TGG - chr3_1:1487943-1487962 None:intergenic 25.0%
!!! TGATGACGATATTAGTTTTA+AGG + chr3_1:1488195-1488214 Msa0343400:three_prime_UTR 25.0%
TTATATTCGGAAAATCCTTG+AGG + chr3_1:1485120-1485139 Msa0343400:intron 30.0%
! ATAGATTTTACGATGAAGGA+GGG + chr3_1:1485279-1485298 Msa0343400:CDS 30.0%
! TTTTGGTAAAATGGATAGAG+AGG + chr3_1:1485455-1485474 Msa0343400:CDS 30.0%
!! TAATTTTGAAGACTAGTGTC+AGG + chr3_1:1486171-1486190 Msa0343400:intron 30.0%
! TAGTTGCTAGCTTATGATAA+TGG + chr3_1:1486525-1486544 Msa0343400:intron 30.0%
!! AAATGGCAAGAGTTTTTCAA+TGG - chr3_1:1486657-1486676 None:intergenic 30.0%
! CATCTCTGCTATTCTAAAAA+TGG - chr3_1:1486674-1486693 None:intergenic 30.0%
GATCATATACACAAAACATG+TGG - chr3_1:1486834-1486853 None:intergenic 30.0%
AATCCCACATAATCAAAGTT+TGG + chr3_1:1487086-1487105 Msa0343400:intron 30.0%
ATCCCACATAATCAAAGTTT+GGG + chr3_1:1487087-1487106 Msa0343400:intron 30.0%
TCGAGTTTAGTTAAAAACTC+AGG - chr3_1:1487552-1487571 None:intergenic 30.0%
!! TCAGGTTTTGATATCACATA+TGG - chr3_1:1487900-1487919 None:intergenic 30.0%
!! TGAAGCATTTTCTTACAACT+TGG - chr3_1:1488013-1488032 None:intergenic 30.0%
GTTGTAAGAAAATGCTTCAA+AGG + chr3_1:1488014-1488033 Msa0343400:CDS 30.0%
AATGCTTCAAAGGTCAAATT+AGG + chr3_1:1488024-1488043 Msa0343400:CDS 30.0%
TAGATCTTAATGTTCCTCTT+AGG - chr3_1:1488166-1488185 None:intergenic 30.0%
! AACATTCTCTAGCTTCGTAA+CGG - chr3_1:1484883-1484902 None:intergenic 35.0%
! GGAGATAGATTTTACGATGA+AGG + chr3_1:1485275-1485294 Msa0343400:CDS 35.0%
! GATAGATTTTACGATGAAGG+AGG + chr3_1:1485278-1485297 Msa0343400:CDS 35.0%
!! GATTTCTTCGGTGTTTATGA+CGG + chr3_1:1485312-1485331 Msa0343400:CDS 35.0%
GGAAAGATTACATAGGATTG+TGG + chr3_1:1485368-1485387 Msa0343400:CDS 35.0%
AAGATTACATAGGATTGTGG+CGG + chr3_1:1485371-1485390 Msa0343400:CDS 35.0%
GGATTTGTCAAGTGATCATA+AGG + chr3_1:1485605-1485624 Msa0343400:CDS 35.0%
!! TCTTTTTCATACGCATCAGT+CGG - chr3_1:1485703-1485722 None:intergenic 35.0%
GATCAATCTCAAACAGATCT+TGG + chr3_1:1485737-1485756 Msa0343400:intron 35.0%
AAAGTTTAGAAGTCTCTGCA+TGG - chr3_1:1485886-1485905 None:intergenic 35.0%
TCTATTCTCATCAACTCATC+AGG - chr3_1:1486392-1486411 None:intergenic 35.0%
TTGATGAGAATAGAAGAAGC+TGG + chr3_1:1486398-1486417 Msa0343400:CDS 35.0%
GGAAGAGTTATAAACTGGAA+TGG + chr3_1:1486422-1486441 Msa0343400:CDS 35.0%
AAGCAATGTGTCATCTTGAT+TGG - chr3_1:1486750-1486769 None:intergenic 35.0%
GCTTAAATTCTCTCGTAAAG+AGG + chr3_1:1486766-1486785 Msa0343400:intron 35.0%
!! CGTTGATTTCAAAGAGCTTA+AGG + chr3_1:1487045-1487064 Msa0343400:intron 35.0%
CACCCAAACTTTGATTATGT+GGG - chr3_1:1487092-1487111 None:intergenic 35.0%
ACACCCAAACTTTGATTATG+TGG - chr3_1:1487093-1487112 None:intergenic 35.0%
!!! TTTTAAGGTTTTGAGCAAGG+TGG - chr3_1:1487651-1487670 None:intergenic 35.0%
CTATGTAATTTGATGCATGC+AGG + chr3_1:1487858-1487877 Msa0343400:intron 35.0%
TTTCTCATACTAGCAAGTGA+TGG + chr3_1:1487954-1487973 Msa0343400:CDS 35.0%
AAATTAGGAGAGTTTGTCGT+GGG + chr3_1:1488039-1488058 Msa0343400:CDS 35.0%
! ACTATTGTCTGAGATAGCAT+TGG + chr3_1:1488100-1488119 Msa0343400:CDS 35.0%
GAACATGAAACGACACTCAT+CGG + chr3_1:1484821-1484840 Msa0343400:CDS 40.0%
ACCGGAGAAGGTTGAAAATT+CGG + chr3_1:1484904-1484923 Msa0343400:CDS 40.0%
! TCCGAATTTTCAACCTTCTC+CGG - chr3_1:1484908-1484927 None:intergenic 40.0%
GCGTAGAGAGATTCATGAAT+CGG + chr3_1:1485004-1485023 Msa0343400:CDS 40.0%
GTTAGCAACTTCGTCATCAT+CGG + chr3_1:1485043-1485062 Msa0343400:CDS 40.0%
GATCAGTCATCCAAGCAAAA+CGG + chr3_1:1485074-1485093 Msa0343400:CDS 40.0%
! GGAGAGAAGTGTGATTTCTT+CGG + chr3_1:1485300-1485319 Msa0343400:CDS 40.0%
CGTGTAGGGAAAGATTACAT+AGG + chr3_1:1485361-1485380 Msa0343400:CDS 40.0%
! TGGAGAAGTATGGGAATGAT+GGG + chr3_1:1485400-1485419 Msa0343400:CDS 40.0%
! GAATGATGGGGAATTTGAGT+GGG + chr3_1:1485413-1485432 Msa0343400:CDS 40.0%
!!! GGAAGGGTGTTTTGGTAAAA+TGG + chr3_1:1485446-1485465 Msa0343400:CDS 40.0%
TGGTAAAATGGATAGAGAGG+TGG + chr3_1:1485458-1485477 Msa0343400:CDS 40.0%
TAAAATGGATAGAGAGGTGG+CGG + chr3_1:1485461-1485480 Msa0343400:CDS 40.0%
ATGAGAATAGAAGAAGCTGG+TGG + chr3_1:1486401-1486420 Msa0343400:CDS 40.0%
CTGGTGGAAGAGTTATAAAC+TGG + chr3_1:1486417-1486436 Msa0343400:CDS 40.0%
TTGCAAGAACACCAAGAACA+CGG - chr3_1:1486451-1486470 None:intergenic 40.0%
TAACCAACCTATAGATCGTG+AGG - chr3_1:1486474-1486493 None:intergenic 40.0%
! TTGTTTCTTGTGTGTGCCTA+TGG + chr3_1:1486976-1486995 Msa0343400:intron 40.0%
ATTTCCACGTGTTTGACCAT+AGG - chr3_1:1486995-1487014 None:intergenic 40.0%
! CAAAGAGCTTAAGGTATCCT+TGG + chr3_1:1487054-1487073 Msa0343400:intron 40.0%
! GTGGGATTTACAGTTTTCCA+AGG - chr3_1:1487074-1487093 None:intergenic 40.0%
CAAATTAGGAGAGTTTGTCG+TGG + chr3_1:1488038-1488057 Msa0343400:CDS 40.0%
!! TCTGAGATAGCATTGGCAAA+GGG + chr3_1:1488107-1488126 Msa0343400:CDS 40.0%
GTCATAGTTGTTGACCTAAG+AGG + chr3_1:1488149-1488168 Msa0343400:CDS 40.0%
CGAAGCTAGAGAATGTTCAC+CGG + chr3_1:1484886-1484905 Msa0343400:CDS 45.0%
TAGAGAATGTTCACCGGAGA+AGG + chr3_1:1484892-1484911 Msa0343400:CDS 45.0%
TGTCAAGCAAAGATCCACGT+CGG + chr3_1:1484942-1484961 Msa0343400:CDS 45.0%
!! ATGGTTCGGTGTCAACGATA+GGG + chr3_1:1485220-1485239 Msa0343400:CDS 45.0%
GATAGGGTGTAGGAAGGAAA+TGG + chr3_1:1485236-1485255 Msa0343400:CDS 45.0%
!! TTCGGTGTTTATGACGGTCA+TGG + chr3_1:1485318-1485337 Msa0343400:CDS 45.0%
ATTACATAGGATTGTGGCGG+AGG + chr3_1:1485374-1485393 Msa0343400:CDS 45.0%
! GTGGAGAAGTATGGGAATGA+TGG + chr3_1:1485399-1485418 Msa0343400:CDS 45.0%
! GGAGAAGTATGGGAATGATG+GGG + chr3_1:1485401-1485420 Msa0343400:CDS 45.0%
! GGAATGATGGGGAATTTGAG+TGG + chr3_1:1485412-1485431 Msa0343400:CDS 45.0%
ATTTGAGTGGGAGAGAGTGA+TGG + chr3_1:1485425-1485444 Msa0343400:CDS 45.0%
!!! AGAGTGATGGAAGGGTGTTT+TGG + chr3_1:1485438-1485457 Msa0343400:CDS 45.0%
AAAATGGATAGAGAGGTGGC+GGG + chr3_1:1485462-1485481 Msa0343400:CDS 45.0%
TTGTTTGTCCACAGCCAAAC+AGG + chr3_1:1486366-1486385 Msa0343400:intron 45.0%
ATCAACTCATCAGGCCTGTT+TGG - chr3_1:1486383-1486402 None:intergenic 45.0%
CTTGCAACCTCACGATCTAT+AGG + chr3_1:1486464-1486483 Msa0343400:CDS 45.0%
CAACCTCACGATCTATAGGT+TGG + chr3_1:1486468-1486487 Msa0343400:intron 45.0%
CTCTTTGTCACAGTGACTTC+AGG - chr3_1:1487918-1487937 None:intergenic 45.0%
TACTAGCAAGTGATGGCTTG+TGG + chr3_1:1487961-1487980 Msa0343400:CDS 45.0%
! ACTAGCAAGTGATGGCTTGT+GGG + chr3_1:1487962-1487981 Msa0343400:CDS 45.0%
!! GTCTGAGATAGCATTGGCAA+AGG + chr3_1:1488106-1488125 Msa0343400:CDS 45.0%
!! ATAATTAATTAATTAATCAA+TGG + chr3_1:1486553-1486572 Msa0343400:intron 5.0%
!!! TTTTCAATTTTAAAATTATT+TGG + chr3_1:1486861-1486880 Msa0343400:intron 5.0%
!!! TATTCAAAATTTAATTTTTA+AGG - chr3_1:1487666-1487685 None:intergenic 5.0%
GCAAAGATCCACGTCGGAAA+TGG + chr3_1:1484948-1484967 Msa0343400:CDS 50.0%
AGTTTCCAAACCACCGTCGT+CGG - chr3_1:1484976-1484995 None:intergenic 50.0%
AGCAACTTCGTCATCATCGG+AGG + chr3_1:1485046-1485065 Msa0343400:CDS 50.0%
GTCATCCAAGCAAAACGGAG+AGG + chr3_1:1485079-1485098 Msa0343400:CDS 50.0%
! ACGTACCTCTCCGTTTTGCT+TGG - chr3_1:1485087-1485106 None:intergenic 50.0%
TATGAGACGCACTGTCCTCA+AGG - chr3_1:1485138-1485157 None:intergenic 50.0%
ACGACCTCTATCGCATGGTT+CGG + chr3_1:1485206-1485225 Msa0343400:CDS 50.0%
!! CATGGTTCGGTGTCAACGAT+AGG + chr3_1:1485219-1485238 Msa0343400:CDS 50.0%
GTCAACGATAGGGTGTAGGA+AGG + chr3_1:1485230-1485249 Msa0343400:CDS 50.0%
AGGGTGTAGGAAGGAAATGG+AGG + chr3_1:1485239-1485258 Msa0343400:CDS 50.0%
AATGGAGGATGCAGTGAGTG+TGG + chr3_1:1485254-1485273 Msa0343400:CDS 50.0%
GGTGTTTATGACGGTCATGG+TGG + chr3_1:1485321-1485340 Msa0343400:CDS 50.0%
! AGTGGGAGAGAGTGATGGAA+GGG + chr3_1:1485430-1485449 Msa0343400:CDS 50.0%
! TGCTGTGGCGGTTGTTGTTA+AGG + chr3_1:1485518-1485537 Msa0343400:CDS 50.0%
! TGTGGCGGTTGTTGTTAAGG+AGG + chr3_1:1485521-1485540 Msa0343400:CDS 50.0%
GCGATCGTTGTTGCAAACTG+TGG + chr3_1:1485543-1485562 Msa0343400:CDS 50.0%
!! TGGTGATTCTAGAGCCGTCT+TGG + chr3_1:1485563-1485582 Msa0343400:CDS 50.0%
!! GGTGATTCTAGAGCCGTCTT+GGG + chr3_1:1485564-1485583 Msa0343400:CDS 50.0%
TTCACCACCTCTTCCCAAGA+CGG - chr3_1:1485580-1485599 None:intergenic 50.0%
CAAGAACACCAAGAACACGG+TGG - chr3_1:1486448-1486467 None:intergenic 50.0%
TGTGCCTATGGTCAAACACG+TGG + chr3_1:1486988-1487007 Msa0343400:intron 50.0%
! CTAGCAAGTGATGGCTTGTG+GGG + chr3_1:1487963-1487982 Msa0343400:CDS 50.0%
GGAATCTTCTCTCCGACGAG+TGG + chr3_1:1484842-1484861 Msa0343400:CDS 55.0%
! TCTCCGACGAGTGGATTCTC+CGG + chr3_1:1484851-1484870 Msa0343400:CDS 55.0%
CAACCGGAGAATCCACTCGT+CGG - chr3_1:1484857-1484876 None:intergenic 55.0%
AGCTTCGTAACGGCTCCAAC+CGG - chr3_1:1484873-1484892 None:intergenic 55.0%
CAACGACGACCTCTATCGCA+TGG + chr3_1:1485201-1485220 Msa0343400:CDS 55.0%
GACACCGAACCATGCGATAG+AGG - chr3_1:1485213-1485232 None:intergenic 55.0%
! CGGTGTCAACGATAGGGTGT+AGG + chr3_1:1485226-1485245 Msa0343400:CDS 55.0%
! ACATAGGATTGTGGCGGAGG+AGG + chr3_1:1485377-1485396 Msa0343400:CDS 55.0%
! CGGAGGAGGTGGAGAAGTAT+GGG + chr3_1:1485391-1485410 Msa0343400:CDS 55.0%
! GAGTGGGAGAGAGTGATGGA+AGG + chr3_1:1485429-1485448 Msa0343400:CDS 55.0%
AACAACAACCGCCACAGCAG+CGG - chr3_1:1485517-1485536 None:intergenic 55.0%
! TCTAGAGCCGTCTTGGGAAG+AGG + chr3_1:1485570-1485589 Msa0343400:CDS 55.0%
GGGAAGAGGTGGTGAAGCTT+TGG + chr3_1:1485584-1485603 Msa0343400:CDS 55.0%
TCATCAGGCCTGTTTGGCTG+TGG - chr3_1:1486377-1486396 None:intergenic 55.0%
TGGAATGGCCACCGTGTTCT+TGG + chr3_1:1486437-1486456 Msa0343400:CDS 55.0%
! CGACGAGTGGATTCTCCGGT+TGG + chr3_1:1484855-1484874 Msa0343400:CDS 60.0%
GTCGGAAATGGCTCCGACGA+CGG + chr3_1:1484960-1484979 Msa0343400:CDS 60.0%
! TGACGGTCATGGTGGTGCTC+AGG + chr3_1:1485329-1485348 Msa0343400:CDS 60.0%
! TCATGGTGGTGCTCAGGTGG+CGG + chr3_1:1485335-1485354 Msa0343400:CDS 60.0%
! TAGGATTGTGGCGGAGGAGG+TGG + chr3_1:1485380-1485399 Msa0343400:CDS 60.0%
GCGGAGGAGGTGGAGAAGTA+TGG + chr3_1:1485390-1485409 Msa0343400:CDS 60.0%
AGAGCCGTCTTGGGAAGAGG+TGG + chr3_1:1485573-1485592 Msa0343400:CDS 60.0%
CGTCGGAGCCATTTCCGACG+TGG - chr3_1:1484959-1484978 None:intergenic 65.0%
GGAAATGGCTCCGACGACGG+TGG + chr3_1:1484963-1484982 Msa0343400:CDS 65.0%
TGGCTCCGACGACGGTGGTT+TGG + chr3_1:1484968-1484987 Msa0343400:CDS 65.0%
! CGGTCATGGTGGTGCTCAGG+TGG + chr3_1:1485332-1485351 Msa0343400:CDS 65.0%
!! TCAGGTGGCGGAGGCGTGTA+GGG + chr3_1:1485347-1485366 Msa0343400:CDS 65.0%
TGATGCCGCGGTTAGGACCG+TGG + chr3_1:1485485-1485504 Msa0343400:CDS 65.0%
GATGCCGCGGTTAGGACCGT+GGG + chr3_1:1485486-1485505 Msa0343400:CDS 65.0%
ATGCCGCGGTTAGGACCGTG+GGG + chr3_1:1485487-1485506 Msa0343400:CDS 65.0%
AGACCCCACGGTCCTAACCG+CGG - chr3_1:1485493-1485512 None:intergenic 65.0%
CACAGCAGCGGTAGACCCCA+CGG - chr3_1:1485505-1485524 None:intergenic 65.0%
! TGGTGGTGCTCAGGTGGCGG+AGG + chr3_1:1485338-1485357 Msa0343400:CDS 70.0%
!! CTCAGGTGGCGGAGGCGTGT+AGG + chr3_1:1485346-1485365 Msa0343400:CDS 70.0%
!! AGAGGTGGCGGGTGATGCCG+CGG + chr3_1:1485473-1485492 Msa0343400:CDS 70.0%
! TGGCGGGTGATGCCGCGGTT+AGG + chr3_1:1485478-1485497 Msa0343400:CDS 70.0%
CGTGGGGTCTACCGCTGCTG+TGG + chr3_1:1485503-1485522 Msa0343400:CDS 70.0%
GGGGTCTACCGCTGCTGTGG+CGG + chr3_1:1485506-1485525 Msa0343400:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1484816 1488239 1484816 ID=Msa0343400;Name=Msa0343400
chr3_1 mRNA 1484816 1488239 1484816 ID=Msa0343400-mRNA-1;Parent=Msa0343400;Name=Msa0343400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|4|49|381
chr3_1 exon 1484816 1485100 1484816 ID=Msa0343400-mRNA-1:exon:495;Parent=Msa0343400-mRNA-1
chr3_1 exon 1485183 1485626 1485183 ID=Msa0343400-mRNA-1:exon:496;Parent=Msa0343400-mRNA-1
chr3_1 exon 1486380 1486485 1486380 ID=Msa0343400-mRNA-1:exon:497;Parent=Msa0343400-mRNA-1
chr3_1 exon 1487880 1488239 1487880 ID=Msa0343400-mRNA-1:exon:498;Parent=Msa0343400-mRNA-1
chr3_1 CDS 1484816 1485100 1484816 ID=Msa0343400-mRNA-1:cds;Parent=Msa0343400-mRNA-1
chr3_1 CDS 1485183 1485626 1485183 ID=Msa0343400-mRNA-1:cds;Parent=Msa0343400-mRNA-1
chr3_1 CDS 1486380 1486485 1486380 ID=Msa0343400-mRNA-1:cds;Parent=Msa0343400-mRNA-1
chr3_1 CDS 1487880 1488190 1487880 ID=Msa0343400-mRNA-1:cds;Parent=Msa0343400-mRNA-1
chr3_1 three_prime_UTR 1488191 1488239 1488191 ID=Msa0343400-mRNA-1:three_prime_utr;Parent=Msa0343400-mRNA-1
Gene Sequence

>Msa0343400

ATGAAGAACATGAAACGACACTCATCGGAATCTTCTCTCCGACGAGTGGATTCTCCGGTTGGAGCCGTTACGAAGCTAGAGAATGTTCACCGGAGAAGGTTGAAAATTCGGAGAATGAAGTATAGTTGTCAAGCAAAGATCCACGTCGGAAATGGCTCCGACGACGGTGGTTTGGAAACTGAGAATGCGCGTAGAGAGATTCATGAATCGGTTGAGATATCGTTGTCGTTAGCAACTTCGTCATCATCGGAGGAAGATGATCAGTCATCCAAGCAAAACGGAGAGGTGAAGCATTATCAACAACAACGACGACCTCTATCGCATGGTTCGGTGTCAACGATAGGGTGTAGGAAGGAAATGGAGGATGCAGTGAGTGTGGAGATAGATTTTACGATGAAGGAGGGAGAGAAGTGTGATTTCTTCGGTGTTTATGACGGTCATGGTGGTGCTCAGGTGGCGGAGGCGTGTAGGGAAAGATTACATAGGATTGTGGCGGAGGAGGTGGAGAAGTATGGGAATGATGGGGAATTTGAGTGGGAGAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGAGAGGTGGCGGGTGATGCCGCGGTTAGGACCGTGGGGTCTACCGCTGCTGTGGCGGTTGTTGTTAAGGAGGCGATCGTTGTTGCAAACTGTGGTGATTCTAGAGCCGTCTTGGGAAGAGGTGGTGAAGCTTTGGATTTGTCAAGTGATCATAAGCCAAACAGGCCTGATGAGTTGATGAGAATAGAAGAAGCTGGTGGAAGAGTTATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCAACCTCACGATCTATAGGAGATGAATATCTTCGACCATATGTGATATCAAAACCTGAAGTCACTGTGACAAAGAGAACCAATGATGATGAATTTCTCATACTAGCAAGTGATGGCTTGTGGGGTGTAATGTCTAGTGAAATTGCATGCCAAGTTGTAAGAAAATGCTTCAAAGGTCAAATTAGGAGAGTTTGTCGTGGGAATGAGAATCAAAGTAATCGTGCTGCTGAAGCTGCAACACTATTGTCTGAGATAGCATTGGCAAAGGGTAGCAGAGACAATACAAGTGTCATAGTTGTTGACCTAAGAGGAACATTAAGATCTAGTTGA
Protein sequence

>Msa0343400

MKNMKRHSSESSLRRVDSPVGAVTKLENVHRRRLKIRRMKYSCQAKIHVGNGSDDGGLETENARREIHESVEISLSLATSSSSEEDDQSSKQNGEVKHYQQQRRPLSHGSVSTIGCRKEMEDAVSVEIDFTMKEGEKCDFFGVYDGHGGAQVAEACRERLHRIVAEEVEKYGNDGEFEWERVMEGCFGKMDREVAGDAAVRTVGSTAAVAVVVKEAIVVANCGDSRAVLGRGGEALDLSSDHKPNRPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDEYLRPYVISKPEVTVTKRTNDDEFLILASDGLWGVMSSEIACQVVRKCFKGQIRRVCRGNENQSNRAAEAATLLSEIALAKGSRDNTSVIVVDLRGTLRSS*