Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012210 | sp|Q9SCM3|RS24_ARATH | 92.308 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 2.36e-151 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012210 | Msa0086160 | 0.808610 | 2.845431e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012210 | MtrunA17_Chr1g0161301 | 99.639 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 0.0 | 558 |
| Msa0012210 | MtrunA17_Chr8g0391761 | 98.182 | 165 | 3 | 0 | 113 | 277 | 20 | 184 | 7.19e-117 | 333 |
| Msa0012210 | MtrunA17_Chr4g0047041 | 32.727 | 165 | 94 | 4 | 89 | 244 | 147 | 303 | 1.82e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012210 | AT3G57490.1 | 92.308 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 2.40e-152 | 426 |
| Msa0012210 | AT2G41840.1 | 90.308 | 227 | 19 | 1 | 42 | 268 | 49 | 272 | 4.85e-151 | 424 |
| Msa0012210 | AT1G58684.1 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.79e-150 | 422 |
| Msa0012210 | AT1G59359.1 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.79e-150 | 422 |
| Msa0012210 | AT1G58983.1 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.79e-150 | 422 |
| Msa0012210 | AT1G58380.1 | 87.342 | 237 | 27 | 1 | 42 | 275 | 48 | 284 | 3.51e-150 | 421 |
| Msa0012210 | AT2G33800.1 | 29.530 | 149 | 97 | 2 | 89 | 237 | 147 | 287 | 2.37e-14 | 72.0 |
Find 108 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTCTCTCTGCATTTCT+AGG | 0.161553 | 1_1:+18353681 | None:intergenic |
| GTTTCTTGACACCTGAATTC+TGG | 0.269557 | 1_1:+18356323 | Msa0012210:CDS |
| GCAAACTGCAAAACCTTCTT+AGG | 0.278482 | 1_1:-18354347 | None:intergenic |
| AACGAAATTGCCAAGGGTTT+TGG | 0.290170 | 1_1:-18354408 | None:intergenic |
| TAATGTATGTTAAGCATATT+AGG | 0.297570 | 1_1:+18356476 | Msa0012210:three_prime_UTR |
| GTATCTTTCTTTATTGCGTT+TGG | 0.327562 | 1_1:+18356558 | Msa0012210:three_prime_UTR |
| GACTGTCTGATGAAGACTTA+TGG | 0.329475 | 1_1:+18356301 | Msa0012210:CDS |
| CCGGGTTCGTTGACCGGCTC+TGG | 0.332475 | 1_1:-18354066 | None:intergenic |
| CGAGTCTCCTTCCAGAATTC+AGG | 0.345000 | 1_1:-18356334 | None:intergenic |
| GATGATTTGGTGTTCTTTGA+TGG | 0.360586 | 1_1:-18353979 | None:intergenic |
| GTTCCTGCACCGAGAGGTTC+TGG | 0.361388 | 1_1:+18354305 | Msa0012210:CDS |
| CCAACATATCGGTGTACTCT+TGG | 0.364787 | 1_1:-18356375 | None:intergenic |
| CTACTAAGGTATCGATGATT+TGG | 0.379765 | 1_1:-18353992 | None:intergenic |
| TTATCCAATAAAAGCAAAAC+TGG | 0.380330 | 1_1:-18356456 | None:intergenic |
| CACAACAAAGGCCTTGATCT+TGG | 0.385331 | 1_1:+18356405 | Msa0012210:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.392766 | 1_1:+18354322 | Msa0012210:CDS |
| ACTGTGCCGTGTAAGGTTAC+TGG | 0.397057 | 1_1:+18354254 | Msa0012210:CDS |
| AAGATCAAGGCCTTTGTTGT+GGG | 0.399949 | 1_1:-18356403 | None:intergenic |
| GGTAGATTTGTTCTAAGCTT+CGG | 0.404639 | 1_1:-18353944 | None:intergenic |
| AGACGGCCGAGCTTTGTTAC+TGG | 0.409258 | 1_1:-18353903 | None:intergenic |
| AACCCTTGGCAATTTCGTTA+AGG | 0.410713 | 1_1:+18354412 | Msa0012210:CDS |
| GCCGGATTCGGAAGAGGCTT+CGG | 0.412694 | 1_1:+18353789 | Msa0012210:CDS |
| CAAGATCAAGGCCTTTGTTG+TGG | 0.418524 | 1_1:-18356404 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 1_1:+18354334 | Msa0012210:CDS |
| TTCAAAGCCTTTGTTGTTGT+GGG | 0.422150 | 1_1:+18354089 | Msa0012210:CDS |
| TTTGAACCGGGTTCGTTGAC+CGG | 0.422499 | 1_1:-18354072 | None:intergenic |
| CAACAACAAAGGCTTTGAAC+CGG | 0.423689 | 1_1:-18354085 | None:intergenic |
| TTCCTGTGAGAAGAGGTTAC+TGG | 0.425027 | 1_1:+18354207 | Msa0012210:CDS |
| TACCTCTCTCTGCATTTCTA+GGG | 0.425343 | 1_1:+18353682 | None:intergenic |
| GGAGGTCGCCGCAGAGGCGC+TGG | 0.430160 | 1_1:+18353852 | Msa0012210:CDS |
| ATCACTTCGTCTTTCAGAGT+GGG | 0.431632 | 1_1:-18354017 | None:intergenic |
| GCTCCTCGGTCTGCCATTGT+TGG | 0.432890 | 1_1:-18353753 | None:intergenic |
| ACCGGAGACAGAGCCGGATT+CGG | 0.440482 | 1_1:+18353777 | Msa0012210:CDS |
| TCCGAATCCGGCTCTGTCTC+CGG | 0.446226 | 1_1:-18353778 | None:intergenic |
| CTCTGTCTCCGGTAGCTCCT+CGG | 0.448842 | 1_1:-18353767 | None:intergenic |
| GCTCTGGTTTGTTTCTGAAC+CGG | 0.455324 | 1_1:-18354050 | None:intergenic |
| ATAAATCAAGTAGAAAACTA+TGG | 0.455426 | 1_1:-18356636 | None:intergenic |
| TCCGAAGCCTCTTCCGAATC+CGG | 0.456291 | 1_1:-18353790 | None:intergenic |
| GTTAGGTGTGAAGTGTAGTA+AGG | 0.467876 | 1_1:+18354133 | Msa0012210:CDS |
| GACGGCCGAGCTTTGTTACT+GGG | 0.470512 | 1_1:-18353902 | None:intergenic |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.471297 | 1_1:+18354321 | Msa0012210:CDS |
| CTTGATCTTGGAGGAGGAAA+GGG | 0.473493 | 1_1:+18356417 | Msa0012210:CDS |
| TGTGGGCTTTGCCAACATAT+CGG | 0.473968 | 1_1:-18356386 | None:intergenic |
| TCCTGTGAGAAGAGGTTACT+GGG | 0.474658 | 1_1:+18354208 | Msa0012210:CDS |
| GCCACATACTGTGCCGTGTA+AGG | 0.481615 | 1_1:+18354247 | Msa0012210:CDS |
| TTTCAGAGTGGGGCCTACTA+AGG | 0.486712 | 1_1:-18354006 | None:intergenic |
| GTTCAAAGCCTTTGTTGTTG+TGG | 0.489519 | 1_1:+18354088 | Msa0012210:CDS |
| CAAATCATCGATACCTTAGT+AGG | 0.501293 | 1_1:+18353993 | Msa0012210:CDS |
| CTCGGCCGTCTCGTCAAAGA+AGG | 0.518865 | 1_1:+18353915 | Msa0012210:CDS |
| GGCTTCGGAGATCGTGGTCG+AGG | 0.518966 | 1_1:+18353804 | Msa0012210:CDS |
| AACAACAAAGGCTTTGAACC+GGG | 0.520283 | 1_1:-18354084 | None:intergenic |
| CCTTTCCTCCTCCAAGATCA+AGG | 0.523177 | 1_1:-18356416 | None:intergenic |
| GACAGAGCCGGATTCGGAAG+AGG | 0.523656 | 1_1:+18353783 | Msa0012210:CDS |
| AGAGGCGGAGATCGTGGCCG+TGG | 0.527803 | 1_1:+18353831 | Msa0012210:CDS |
| ACCTTACACGGCACAGTATG+TGG | 0.528460 | 1_1:-18354248 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 1_1:+18354283 | Msa0012210:CDS |
| CGTGGTCGAGGTGGCAGAGG+CGG | 0.538891 | 1_1:+18353816 | Msa0012210:CDS |
| CACTTTCCAGTAACCTTACA+CGG | 0.538940 | 1_1:-18354260 | None:intergenic |
| ATACCAGAACCTCTCGGTGC+AGG | 0.541543 | 1_1:-18354308 | None:intergenic |
| ATGGCAGACCGAGGAGCTAC+CGG | 0.543216 | 1_1:+18353759 | Msa0012210:CDS |
| CATCACTTCGTCTTTCAGAG+TGG | 0.543843 | 1_1:-18354018 | None:intergenic |
| AGGCGCTGGCCGTCGTGAAG+AGG | 0.545371 | 1_1:+18353866 | Msa0012210:CDS |
| CACTCTCTCTCAACCAACAA+TGG | 0.546279 | 1_1:+18353740 | Msa0012210:exon |
| CGCCTCTGCGGCGACCTCCA+CGG | 0.546686 | 1_1:-18353848 | None:intergenic |
| CTTGACACCTGAATTCTGGA+AGG | 0.547375 | 1_1:+18356327 | Msa0012210:CDS |
| CCTTGATCTTGGAGGAGGAA+AGG | 0.547470 | 1_1:+18356416 | Msa0012210:CDS |
| AACAAAGGCCTTGATCTTGG+AGG | 0.548080 | 1_1:+18356408 | Msa0012210:CDS |
| GGTTGAGAGAGAGTGAGAGA+AGG | 0.549893 | 1_1:-18353732 | None:intergenic |
| ATATCGGTGTACTCTTGGAA+TGG | 0.552478 | 1_1:-18356370 | None:intergenic |
| GATCGTGGTCGAGGTGGCAG+AGG | 0.555874 | 1_1:+18353813 | Msa0012210:CDS |
| CCAGAGCCGGTCAACGAACC+CGG | 0.560802 | 1_1:+18354066 | Msa0012210:CDS |
| ATGATTTGGTGTTCTTTGAT+GGG | 0.563159 | 1_1:-18353978 | None:intergenic |
| AGGGGATCTACCAAAACCCT+TGG | 0.565634 | 1_1:+18354398 | Msa0012210:CDS |
| GGAGCTACCGGAGACAGAGC+CGG | 0.566711 | 1_1:+18353771 | Msa0012210:CDS |
| AAAGGCCTTGATCTTGGAGG+AGG | 0.570185 | 1_1:+18356411 | Msa0012210:CDS |
| TCACTTCGTCTTTCAGAGTG+GGG | 0.570297 | 1_1:-18354016 | None:intergenic |
| CCCCAGTAACCTCTTCTCAC+AGG | 0.570541 | 1_1:-18354209 | None:intergenic |
| CCAAGAGTACACCGATATGT+TGG | 0.570916 | 1_1:+18356375 | Msa0012210:CDS |
| AACAATGGTCATGTTGGGTT+AGG | 0.571470 | 1_1:+18354116 | Msa0012210:CDS |
| GAAGTTGCTACTGCAATTCG+CGG | 0.571598 | 1_1:+18354155 | Msa0012210:CDS |
| TGGGTCCCAGTAACAAAGCT+CGG | 0.574303 | 1_1:+18353897 | Msa0012210:CDS |
| GTGACAACAATGGTCATGTT+GGG | 0.588102 | 1_1:+18354111 | Msa0012210:CDS |
| GGTGACAACAATGGTCATGT+TGG | 0.588840 | 1_1:+18354110 | Msa0012210:CDS |
| GGTGGCAGAGGCGGAGATCG+TGG | 0.589603 | 1_1:+18353825 | Msa0012210:CDS |
| GGCCGTGGAGGTCGCCGCAG+AGG | 0.598782 | 1_1:+18353846 | Msa0012210:CDS |
| GTTCTTTGATGGGAAGAGAG+TGG | 0.601081 | 1_1:-18353968 | None:intergenic |
| AGACCTTAACGAAATTGCCA+AGG | 0.604222 | 1_1:-18354415 | None:intergenic |
| GTTGTCACCCACAACAACAA+AGG | 0.604712 | 1_1:-18354096 | None:intergenic |
| CTTTGATGGGAAGAGAGTGG+AGG | 0.605151 | 1_1:-18353965 | None:intergenic |
| CGAAGTGATGAAAATCATGC+CGG | 0.605193 | 1_1:+18354031 | Msa0012210:CDS |
| GTTCAGAAACAAACCAGAGC+CGG | 0.607188 | 1_1:+18354053 | Msa0012210:CDS |
| GTTGGCAAAGCCCACAACAA+AGG | 0.608366 | 1_1:+18356393 | Msa0012210:CDS |
| GACCTTAACGAAATTGCCAA+GGG | 0.610712 | 1_1:-18354414 | None:intergenic |
| CACGACGGCCAGCGCCTCTG+CGG | 0.615990 | 1_1:-18353860 | None:intergenic |
| TTCGGAGATCGTGGTCGAGG+TGG | 0.620909 | 1_1:+18353807 | Msa0012210:CDS |
| GTTGTTGTGGGTGACAACAA+TGG | 0.621205 | 1_1:+18354101 | Msa0012210:CDS |
| AGTGTGATTCCTGTGAGAAG+AGG | 0.634613 | 1_1:+18354200 | Msa0012210:CDS |
| GGAAGAGGCTTCGGAGATCG+TGG | 0.636414 | 1_1:+18353798 | Msa0012210:CDS |
| AGAGTGAGAGAAGGAGAATG+CGG | 0.636811 | 1_1:-18353723 | None:intergenic |
| AACCCTAGAAATGCAGAGAG+AGG | 0.638699 | 1_1:-18353684 | None:intergenic |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.643088 | 1_1:+18354263 | Msa0012210:CDS |
| GCAACAATACCAGAACCTCT+CGG | 0.646729 | 1_1:-18354314 | None:intergenic |
| CGTATGGTTCCTGCACCGAG+AGG | 0.664454 | 1_1:+18354299 | Msa0012210:CDS |
| GGCGGAGATCGTGGCCGTGG+AGG | 0.667002 | 1_1:+18353834 | Msa0012210:CDS |
| GATCTTGGAGGAGGAAAGGG+CGG | 0.671501 | 1_1:+18356420 | Msa0012210:CDS |
| CTGTGAGAAGAGGTTACTGG+GGG | 0.685323 | 1_1:+18354210 | Msa0012210:CDS |
| CAACCAACAATGGCAGACCG+AGG | 0.687866 | 1_1:+18353750 | Msa0012210:exon |
| CCTGTGAGAAGAGGTTACTG+GGG | 0.696718 | 1_1:+18354209 | Msa0012210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAATTAAAATATGA+AGG | - | chr1_1:18354452-18354471 | None:intergenic | 10.0% |
| !! | AATAAATGAATATATAAAAC+AGG | - | chr1_1:18354611-18354630 | None:intergenic | 10.0% |
| !!! | ATTTCAATATTTTTTTTTGA+AGG | + | chr1_1:18355334-18355353 | Msa0012210:intron | 10.0% |
| !!! | TATAATTTTTATTGTTGAAA+AGG | + | chr1_1:18355509-18355528 | Msa0012210:intron | 10.0% |
| !! | ATTTATAGATTTATTTGTAT+TGG | - | chr1_1:18355572-18355591 | None:intergenic | 10.0% |
| !!! | TCAAGAATTATATTTTTTTT+TGG | + | chr1_1:18355699-18355718 | Msa0012210:intron | 10.0% |
| !!! | CAAGAATTATATTTTTTTTT+GGG | + | chr1_1:18355700-18355719 | Msa0012210:intron | 10.0% |
| !! | TTTATATATACAAATATACA+GGG | - | chr1_1:18355762-18355781 | None:intergenic | 10.0% |
| !! | ATTTATATATACAAATATAC+AGG | - | chr1_1:18355763-18355782 | None:intergenic | 10.0% |
| !!! | ATTGATTTGAAAATAAATGA+TGG | + | chr1_1:18355307-18355326 | Msa0012210:intron | 15.0% |
| !! | AAAAAATTCTTCTTTATAGT+TGG | - | chr1_1:18355436-18355455 | None:intergenic | 15.0% |
| !! | AATATAATTCTTGAATTAGT+CGG | - | chr1_1:18355693-18355712 | None:intergenic | 15.0% |
| !! | TTATATATACAAATATACAG+GGG | - | chr1_1:18355761-18355780 | None:intergenic | 15.0% |
| !! | TTCAATTGTATATTATAAAC+AGG | + | chr1_1:18355978-18355997 | Msa0012210:intron | 15.0% |
| !! | TCAATTGTATATTATAAACA+GGG | + | chr1_1:18355979-18355998 | Msa0012210:intron | 15.0% |
| !!! | TTTATTTGAGTTGTATAATG+TGG | + | chr1_1:18354625-18354644 | Msa0012210:intron | 20.0% |
| !! | AATTAATCATTTGCAAAACT+TGG | + | chr1_1:18354946-18354965 | Msa0012210:intron | 20.0% |
| !! | TCTTATTGTGAGTAAAATTT+AGG | + | chr1_1:18355262-18355281 | Msa0012210:intron | 20.0% |
| !! | TAACAGACGTATTAAATTTA+AGG | + | chr1_1:18355459-18355478 | Msa0012210:intron | 20.0% |
| !!! | ATCTTTAATTTGTTCATCAA+TGG | + | chr1_1:18355781-18355800 | Msa0012210:intron | 20.0% |
| !!! | ATCCATTTAAAATGTAAAGT+GGG | - | chr1_1:18355815-18355834 | None:intergenic | 20.0% |
| !!! | AATCCATTTAAAATGTAAAG+TGG | - | chr1_1:18355816-18355835 | None:intergenic | 20.0% |
| !!! | TCATAGAATTTAACTTGAAA+TGG | + | chr1_1:18355858-18355877 | Msa0012210:intron | 20.0% |
| !! | CAATTGTATATTATAAACAG+GGG | + | chr1_1:18355980-18355999 | Msa0012210:intron | 20.0% |
| !! | ATTTCAAAATATCATTCCAA+GGG | - | chr1_1:18356006-18356025 | None:intergenic | 20.0% |
| !! | AATTTCAAAATATCATTCCA+AGG | - | chr1_1:18356007-18356026 | None:intergenic | 20.0% |
| !! | CATTTGTTTGTATAATCAAA+TGG | + | chr1_1:18356058-18356077 | Msa0012210:intron | 20.0% |
| !!! | TTAATGCTATTTATTTTTGC+AGG | + | chr1_1:18356270-18356289 | Msa0012210:intron | 20.0% |
| !! | TAATGTATGTTAAGCATATT+AGG | + | chr1_1:18356476-18356495 | Msa0012210:three_prime_UTR | 20.0% |
| !!! | ATGATGTTTTTACTTCTTCA+AGG | + | chr1_1:18354378-18354397 | Msa0012210:CDS | 25.0% |
| !!! | TGATGTTTTTACTTCTTCAA+GGG | + | chr1_1:18354379-18354398 | Msa0012210:CDS | 25.0% |
| !!! | TTTAAGTTGTTTATCCAAAC+AGG | - | chr1_1:18354652-18354671 | None:intergenic | 25.0% |
| ! | ATACAACTCAAATAAAAGAC+AGG | - | chr1_1:18354691-18354710 | None:intergenic | 25.0% |
| ! | AATAGATAGATAGAAACAAG+TGG | - | chr1_1:18355118-18355137 | None:intergenic | 25.0% |
| ! | GTAAATAGAAGCTAGATAAA+TGG | + | chr1_1:18355153-18355172 | Msa0012210:intron | 25.0% |
| ! | TTATGTATGTATATTTGCAG+CGG | + | chr1_1:18355382-18355401 | Msa0012210:intron | 25.0% |
| !!! | TTGTATTGGTTTGATACTTT+CGG | - | chr1_1:18355558-18355577 | None:intergenic | 25.0% |
| !!! | TTTTGCAACTAAACTTGTTT+GGG | + | chr1_1:18355629-18355648 | Msa0012210:intron | 25.0% |
| !! | TACCCACTTTACATTTTAAA+TGG | + | chr1_1:18355810-18355829 | Msa0012210:intron | 25.0% |
| ! | TTTAATGTTCTTAACCACAA+GGG | - | chr1_1:18356034-18356053 | None:intergenic | 25.0% |
| !! | TTTTAATGTTCTTAACCACA+AGG | - | chr1_1:18356035-18356054 | None:intergenic | 25.0% |
| ! | CGACTAATAAAGTTTATATG+CGG | - | chr1_1:18356101-18356120 | None:intergenic | 25.0% |
| !!! | TTTACCAGTTTTGCTTTTAT+TGG | + | chr1_1:18356452-18356471 | Msa0012210:three_prime_UTR | 25.0% |
| ! | TTATCCAATAAAAGCAAAAC+TGG | - | chr1_1:18356459-18356478 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTTTTGCTACTG+TGG | + | chr1_1:18356512-18356531 | Msa0012210:three_prime_UTR | 25.0% |
| !! | ATGATTTGGTGTTCTTTGAT+GGG | - | chr1_1:18353981-18354000 | None:intergenic | 30.0% |
| !! | GATGTTTTTACTTCTTCAAG+GGG | + | chr1_1:18354380-18354399 | Msa0012210:CDS | 30.0% |
| !! | GCTGTTTTCATAAGCTATAT+TGG | + | chr1_1:18354757-18354776 | Msa0012210:intron | 30.0% |
| AAGCTATATTGGAGAACTTA+TGG | + | chr1_1:18354768-18354787 | Msa0012210:intron | 30.0% | |
| CTATCAATTTACGAGTTAGA+TGG | + | chr1_1:18355028-18355047 | Msa0012210:intron | 30.0% | |
| !! | TAGTGACTTCGCTATTTTAA+AGG | - | chr1_1:18355078-18355097 | None:intergenic | 30.0% |
| TAAAATAGCGAAGTCACTAA+TGG | + | chr1_1:18355079-18355098 | Msa0012210:intron | 30.0% | |
| AAAATAGCGAAGTCACTAAT+GGG | + | chr1_1:18355080-18355099 | Msa0012210:intron | 30.0% | |
| ATCTATCTATTTCCCTTGAA+TGG | + | chr1_1:18355127-18355146 | Msa0012210:intron | 30.0% | |
| TCTATTTACTGTCCATTCAA+GGG | - | chr1_1:18355142-18355161 | None:intergenic | 30.0% | |
| TTCTATTTACTGTCCATTCA+AGG | - | chr1_1:18355143-18355162 | None:intergenic | 30.0% | |
| !!! | TATTTTTTTTTGAAGGAGCC+TGG | + | chr1_1:18355341-18355360 | Msa0012210:intron | 30.0% |
| CCAATCATATTGAAATATCC+AGG | - | chr1_1:18355362-18355381 | None:intergenic | 30.0% | |
| CCTGGATATTTCAATATGAT+TGG | + | chr1_1:18355359-18355378 | Msa0012210:intron | 30.0% | |
| !! | CTTTTGCAACTAAACTTGTT+TGG | + | chr1_1:18355628-18355647 | Msa0012210:intron | 30.0% |
| ! | TTTGCAACTAAACTTGTTTG+GGG | + | chr1_1:18355630-18355649 | Msa0012210:intron | 30.0% |
| !!! | TATTTTTTTTTGGGTAGCCA+AGG | + | chr1_1:18355709-18355728 | Msa0012210:intron | 30.0% |
| ATTATAATCCACAGACTTGT+TGG | + | chr1_1:18355915-18355934 | Msa0012210:intron | 30.0% | |
| ! | TTATAATCCACAGACTTGTT+GGG | + | chr1_1:18355916-18355935 | Msa0012210:intron | 30.0% |
| !! | TTTGTGTTGGTTTGTTTCAT+TGG | + | chr1_1:18356151-18356170 | Msa0012210:intron | 30.0% |
| !! | GTTTCATTGGTTTATAGTTC+TGG | + | chr1_1:18356164-18356183 | Msa0012210:intron | 30.0% |
| ! | TGTGGTTTACTTTCTTTTTG+AGG | + | chr1_1:18356530-18356549 | Msa0012210:three_prime_UTR | 30.0% |
| GTATCTTTCTTTATTGCGTT+TGG | + | chr1_1:18356558-18356577 | Msa0012210:three_prime_UTR | 30.0% | |
| ! | ATTTTTCTTCCTCTTCACGA+CGG | - | chr1_1:18353878-18353897 | None:intergenic | 35.0% |
| TCGTGAAGAGGAAGAAAAAT+GGG | + | chr1_1:18353878-18353897 | Msa0012210:CDS | 35.0% | |
| ! | GGTAGATTTGTTCTAAGCTT+CGG | - | chr1_1:18353947-18353966 | None:intergenic | 35.0% |
| !! | GATGATTTGGTGTTCTTTGA+TGG | - | chr1_1:18353982-18354001 | None:intergenic | 35.0% |
| !! | CTACTAAGGTATCGATGATT+TGG | - | chr1_1:18353995-18354014 | None:intergenic | 35.0% |
| CAAATCATCGATACCTTAGT+AGG | + | chr1_1:18353993-18354012 | Msa0012210:CDS | 35.0% | |
| !! | TTCAAAGCCTTTGTTGTTGT+GGG | + | chr1_1:18354089-18354108 | Msa0012210:CDS | 35.0% |
| TTGTATAATGTGGACCTGTT+TGG | + | chr1_1:18354635-18354654 | Msa0012210:intron | 35.0% | |
| TGGTGTGATTATATGTAGCT+AGG | + | chr1_1:18354966-18354985 | Msa0012210:intron | 35.0% | |
| GTTAGATGGACATAAGTGAT+AGG | + | chr1_1:18355042-18355061 | Msa0012210:intron | 35.0% | |
| GACATAAGTGATAGGTTAGT+GGG | + | chr1_1:18355050-18355069 | Msa0012210:intron | 35.0% | |
| AGAAACAAGTGGAAGATTAG+AGG | - | chr1_1:18355107-18355126 | None:intergenic | 35.0% | |
| ! | CATCATTTGAAAGCATGTCT+AGG | - | chr1_1:18355195-18355214 | None:intergenic | 35.0% |
| CATGCTTTCAAATGATGTGT+TGG | + | chr1_1:18355198-18355217 | Msa0012210:intron | 35.0% | |
| !! | ATGATGTGTTGGTGCTAAAT+AGG | + | chr1_1:18355209-18355228 | Msa0012210:intron | 35.0% |
| ! | TTTGGGGTAGCTCAATATTT+GGG | + | chr1_1:18355646-18355665 | Msa0012210:intron | 35.0% |
| TTAAAAACCCAACAAGTCTG+TGG | - | chr1_1:18355926-18355945 | None:intergenic | 35.0% | |
| !!! | TTTTGAAATTGACTCCCTTG+TGG | + | chr1_1:18356017-18356036 | Msa0012210:intron | 35.0% |
| CAAACACGAGTAACAAATTC+TGG | - | chr1_1:18356222-18356241 | None:intergenic | 35.0% | |
| GTCGTGAAGAGGAAGAAAAA+TGG | + | chr1_1:18353877-18353896 | Msa0012210:CDS | 40.0% | |
| ! | TTTTGCCTTCTTTGACGAGA+CGG | - | chr1_1:18353923-18353942 | None:intergenic | 40.0% |
| ATCACTTCGTCTTTCAGAGT+GGG | - | chr1_1:18354020-18354039 | None:intergenic | 40.0% | |
| CGAAGTGATGAAAATCATGC+CGG | + | chr1_1:18354031-18354050 | Msa0012210:CDS | 40.0% | |
| !! | AACAACAAAGGCTTTGAACC+GGG | - | chr1_1:18354087-18354106 | None:intergenic | 40.0% |
| !! | CAACAACAAAGGCTTTGAAC+CGG | - | chr1_1:18354088-18354107 | None:intergenic | 40.0% |
| !! | GTTCAAAGCCTTTGTTGTTG+TGG | + | chr1_1:18354088-18354107 | Msa0012210:CDS | 40.0% |
| GTGACAACAATGGTCATGTT+GGG | + | chr1_1:18354111-18354130 | Msa0012210:CDS | 40.0% | |
| AACAATGGTCATGTTGGGTT+AGG | + | chr1_1:18354116-18354135 | Msa0012210:CDS | 40.0% | |
| GTTAGGTGTGAAGTGTAGTA+AGG | + | chr1_1:18354133-18354152 | Msa0012210:CDS | 40.0% | |
| GTTACTGGGGGAATAAGATT+GGG | + | chr1_1:18354222-18354241 | Msa0012210:CDS | 40.0% | |
| CACTTTCCAGTAACCTTACA+CGG | - | chr1_1:18354263-18354282 | None:intergenic | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | + | chr1_1:18354263-18354282 | Msa0012210:CDS | 40.0% | |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | + | chr1_1:18354283-18354302 | Msa0012210:CDS | 40.0% |
| TTCTGGTATTGTTGCTGCTA+GGG | + | chr1_1:18354322-18354341 | Msa0012210:CDS | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | - | chr1_1:18354350-18354369 | None:intergenic | 40.0% | |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | + | chr1_1:18354350-18354369 | Msa0012210:CDS | 40.0% |
| ! | AACGAAATTGCCAAGGGTTT+TGG | - | chr1_1:18354411-18354430 | None:intergenic | 40.0% |
| AACCCTTGGCAATTTCGTTA+AGG | + | chr1_1:18354412-18354431 | Msa0012210:CDS | 40.0% | |
| GACCTTAACGAAATTGCCAA+GGG | - | chr1_1:18354417-18354436 | None:intergenic | 40.0% | |
| AGACCTTAACGAAATTGCCA+AGG | - | chr1_1:18354418-18354437 | None:intergenic | 40.0% | |
| GGTTAGTGACAGTGTTAGTT+TGG | + | chr1_1:18354987-18355006 | Msa0012210:intron | 40.0% | |
| GGACATAAGTGATAGGTTAG+TGG | + | chr1_1:18355049-18355068 | Msa0012210:intron | 40.0% | |
| TATGCGTGTACAAACTTGAG+TGG | + | chr1_1:18355235-18355254 | Msa0012210:intron | 40.0% | |
| AGCTCGCGAAAAATTTATGC+TGG | + | chr1_1:18355408-18355427 | Msa0012210:intron | 40.0% | |
| GCTCGCGAAAAATTTATGCT+GGG | + | chr1_1:18355409-18355428 | Msa0012210:intron | 40.0% | |
| CTCGCGAAAAATTTATGCTG+GGG | + | chr1_1:18355410-18355429 | Msa0012210:intron | 40.0% | |
| ! | GTTTGGGGTAGCTCAATATT+TGG | + | chr1_1:18355645-18355664 | Msa0012210:intron | 40.0% |
| TTGGGGTAGCTCAATATTTG+GGG | + | chr1_1:18355647-18355666 | Msa0012210:intron | 40.0% | |
| ATATTATAAACAGGGGCCCT+TGG | + | chr1_1:18355987-18356006 | Msa0012210:intron | 40.0% | |
| GTCATATATTGAGACAGTGC+TGG | + | chr1_1:18356120-18356139 | Msa0012210:intron | 40.0% | |
| GCATACATAGATTCGATTGC+AGG | - | chr1_1:18356200-18356219 | None:intergenic | 40.0% | |
| GACTGTCTGATGAAGACTTA+TGG | + | chr1_1:18356301-18356320 | Msa0012210:CDS | 40.0% | |
| GTTTCTTGACACCTGAATTC+TGG | + | chr1_1:18356323-18356342 | Msa0012210:CDS | 40.0% | |
| ATATCGGTGTACTCTTGGAA+TGG | - | chr1_1:18356373-18356392 | None:intergenic | 40.0% | |
| ! | AAGATCAAGGCCTTTGTTGT+GGG | - | chr1_1:18356406-18356425 | None:intergenic | 40.0% |
| AACCCTAGAAATGCAGAGAG+AGG | - | chr1_1:18353687-18353706 | None:intergenic | 45.0% | |
| AGAGTGAGAGAAGGAGAATG+CGG | - | chr1_1:18353726-18353745 | None:intergenic | 45.0% | |
| CACTCTCTCTCAACCAACAA+TGG | + | chr1_1:18353740-18353759 | Msa0012210:exon | 45.0% | |
| GTTCTTTGATGGGAAGAGAG+TGG | - | chr1_1:18353971-18353990 | None:intergenic | 45.0% | |
| TCACTTCGTCTTTCAGAGTG+GGG | - | chr1_1:18354019-18354038 | None:intergenic | 45.0% | |
| CATCACTTCGTCTTTCAGAG+TGG | - | chr1_1:18354021-18354040 | None:intergenic | 45.0% | |
| !! | GCTCTGGTTTGTTTCTGAAC+CGG | - | chr1_1:18354053-18354072 | None:intergenic | 45.0% |
| GTTCAGAAACAAACCAGAGC+CGG | + | chr1_1:18354053-18354072 | Msa0012210:CDS | 45.0% | |
| GTTGTCACCCACAACAACAA+AGG | - | chr1_1:18354099-18354118 | None:intergenic | 45.0% | |
| GTTGTTGTGGGTGACAACAA+TGG | + | chr1_1:18354101-18354120 | Msa0012210:CDS | 45.0% | |
| GGTGACAACAATGGTCATGT+TGG | + | chr1_1:18354110-18354129 | Msa0012210:CDS | 45.0% | |
| GAAGTTGCTACTGCAATTCG+CGG | + | chr1_1:18354155-18354174 | Msa0012210:CDS | 45.0% | |
| AGTGTGATTCCTGTGAGAAG+AGG | + | chr1_1:18354200-18354219 | Msa0012210:CDS | 45.0% | |
| TTCCTGTGAGAAGAGGTTAC+TGG | + | chr1_1:18354207-18354226 | Msa0012210:CDS | 45.0% | |
| TCCTGTGAGAAGAGGTTACT+GGG | + | chr1_1:18354208-18354227 | Msa0012210:CDS | 45.0% | |
| GGTTACTGGGGGAATAAGAT+TGG | + | chr1_1:18354221-18354240 | Msa0012210:CDS | 45.0% | |
| GCAACAATACCAGAACCTCT+CGG | - | chr1_1:18354317-18354336 | None:intergenic | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | + | chr1_1:18354321-18354340 | Msa0012210:CDS | 45.0% | |
| CATACAGGGTCTAGTGTGAT+TGG | - | chr1_1:18354896-18354915 | None:intergenic | 45.0% | |
| TTCGCGCTTCTTAGCATACA+GGG | - | chr1_1:18354910-18354929 | None:intergenic | 45.0% | |
| ! | GCTGGATGAGTAGTTTGTGT+TGG | + | chr1_1:18356138-18356157 | Msa0012210:intron | 45.0% |
| CTTGACACCTGAATTCTGGA+AGG | + | chr1_1:18356327-18356346 | Msa0012210:CDS | 45.0% | |
| CCAACATATCGGTGTACTCT+TGG | - | chr1_1:18356378-18356397 | None:intergenic | 45.0% | |
| ! | CCAAGAGTACACCGATATGT+TGG | + | chr1_1:18356375-18356394 | Msa0012210:CDS | 45.0% |
| TGTGGGCTTTGCCAACATAT+CGG | - | chr1_1:18356389-18356408 | None:intergenic | 45.0% | |
| CAAGATCAAGGCCTTTGTTG+TGG | - | chr1_1:18356407-18356426 | None:intergenic | 45.0% | |
| CACAACAAAGGCCTTGATCT+TGG | + | chr1_1:18356405-18356424 | Msa0012210:CDS | 45.0% | |
| AACAAAGGCCTTGATCTTGG+AGG | + | chr1_1:18356408-18356427 | Msa0012210:CDS | 45.0% | |
| CTTGATCTTGGAGGAGGAAA+GGG | + | chr1_1:18356417-18356436 | Msa0012210:CDS | 45.0% | |
| !! | CAATAAAAATTATAAATTAT+GGG | - | chr1_1:18355503-18355522 | None:intergenic | 5.0% |
| !! | ACAATAAAAATTATAAATTA+TGG | - | chr1_1:18355504-18355523 | None:intergenic | 5.0% |
| GGTTGAGAGAGAGTGAGAGA+AGG | - | chr1_1:18353735-18353754 | None:intergenic | 50.0% | |
| TGGGTCCCAGTAACAAAGCT+CGG | + | chr1_1:18353897-18353916 | Msa0012210:CDS | 50.0% | |
| CTTTGATGGGAAGAGAGTGG+AGG | - | chr1_1:18353968-18353987 | None:intergenic | 50.0% | |
| TTTCAGAGTGGGGCCTACTA+AGG | - | chr1_1:18354009-18354028 | None:intergenic | 50.0% | |
| TTTGAACCGGGTTCGTTGAC+CGG | - | chr1_1:18354075-18354094 | None:intergenic | 50.0% | |
| CCTGTGAGAAGAGGTTACTG+GGG | + | chr1_1:18354209-18354228 | Msa0012210:CDS | 50.0% | |
| CTGTGAGAAGAGGTTACTGG+GGG | + | chr1_1:18354210-18354229 | Msa0012210:CDS | 50.0% | |
| ACCTTACACGGCACAGTATG+TGG | - | chr1_1:18354251-18354270 | None:intergenic | 50.0% | |
| ACTGTGCCGTGTAAGGTTAC+TGG | + | chr1_1:18354254-18354273 | Msa0012210:CDS | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | + | chr1_1:18354334-18354353 | Msa0012210:CDS | 50.0% | |
| AGGGGATCTACCAAAACCCT+TGG | + | chr1_1:18354398-18354417 | Msa0012210:CDS | 50.0% | |
| GTTCGCGCTTCTTAGCATAC+AGG | - | chr1_1:18354911-18354930 | None:intergenic | 50.0% | |
| ! | ATGCTAAGAAGCGCGAACAC+AGG | + | chr1_1:18354913-18354932 | Msa0012210:intron | 50.0% |
| CGAGTCTCCTTCCAGAATTC+AGG | - | chr1_1:18356337-18356356 | None:intergenic | 50.0% | |
| GTTGGCAAAGCCCACAACAA+AGG | + | chr1_1:18356393-18356412 | Msa0012210:CDS | 50.0% | |
| AAAGGCCTTGATCTTGGAGG+AGG | + | chr1_1:18356411-18356430 | Msa0012210:CDS | 50.0% | |
| CCTTTCCTCCTCCAAGATCA+AGG | - | chr1_1:18356419-18356438 | None:intergenic | 50.0% | |
| CCTTGATCTTGGAGGAGGAA+AGG | + | chr1_1:18356416-18356435 | Msa0012210:CDS | 50.0% | |
| CAACCAACAATGGCAGACCG+AGG | + | chr1_1:18353750-18353769 | Msa0012210:exon | 55.0% | |
| TCCGAAGCCTCTTCCGAATC+CGG | - | chr1_1:18353793-18353812 | None:intergenic | 55.0% | |
| !! | GACGGCCGAGCTTTGTTACT+GGG | - | chr1_1:18353905-18353924 | None:intergenic | 55.0% |
| !! | AGACGGCCGAGCTTTGTTAC+TGG | - | chr1_1:18353906-18353925 | None:intergenic | 55.0% |
| CCCCAGTAACCTCTTCTCAC+AGG | - | chr1_1:18354212-18354231 | None:intergenic | 55.0% | |
| GCCACATACTGTGCCGTGTA+AGG | + | chr1_1:18354247-18354266 | Msa0012210:CDS | 55.0% | |
| ! | ATACCAGAACCTCTCGGTGC+AGG | - | chr1_1:18354311-18354330 | None:intergenic | 55.0% |
| TCATATGGGAGGGGTAGCCT+TGG | - | chr1_1:18355729-18355748 | None:intergenic | 55.0% | |
| AGGCTACCCCTCCCATATGA+AGG | + | chr1_1:18355729-18355748 | Msa0012210:intron | 55.0% | |
| GGCTACCCCTCCCATATGAA+GGG | + | chr1_1:18355730-18355749 | Msa0012210:intron | 55.0% | |
| CGTAGCCCTTCATATGGGAG+GGG | - | chr1_1:18355738-18355757 | None:intergenic | 55.0% | |
| GCGTAGCCCTTCATATGGGA+GGG | - | chr1_1:18355739-18355758 | None:intergenic | 55.0% | |
| ! | AGGGGCGTAGCCCTTCATAT+GGG | - | chr1_1:18355743-18355762 | None:intergenic | 55.0% |
| GATCTTGGAGGAGGAAAGGG+CGG | + | chr1_1:18356420-18356439 | Msa0012210:CDS | 55.0% | |
| GCTCCTCGGTCTGCCATTGT+TGG | - | chr1_1:18353756-18353775 | None:intergenic | 60.0% | |
| ATGGCAGACCGAGGAGCTAC+CGG | + | chr1_1:18353759-18353778 | Msa0012210:CDS | 60.0% | |
| CTCTGTCTCCGGTAGCTCCT+CGG | - | chr1_1:18353770-18353789 | None:intergenic | 60.0% | |
| ACCGGAGACAGAGCCGGATT+CGG | + | chr1_1:18353777-18353796 | Msa0012210:CDS | 60.0% | |
| TCCGAATCCGGCTCTGTCTC+CGG | - | chr1_1:18353781-18353800 | None:intergenic | 60.0% | |
| GACAGAGCCGGATTCGGAAG+AGG | + | chr1_1:18353783-18353802 | Msa0012210:CDS | 60.0% | |
| GCCGGATTCGGAAGAGGCTT+CGG | + | chr1_1:18353789-18353808 | Msa0012210:CDS | 60.0% | |
| GGAAGAGGCTTCGGAGATCG+TGG | + | chr1_1:18353798-18353817 | Msa0012210:CDS | 60.0% | |
| TTCGGAGATCGTGGTCGAGG+TGG | + | chr1_1:18353807-18353826 | Msa0012210:CDS | 60.0% | |
| CTCGGCCGTCTCGTCAAAGA+AGG | + | chr1_1:18353915-18353934 | Msa0012210:CDS | 60.0% | |
| CGTATGGTTCCTGCACCGAG+AGG | + | chr1_1:18354299-18354318 | Msa0012210:CDS | 60.0% | |
| GTTCCTGCACCGAGAGGTTC+TGG | + | chr1_1:18354305-18354324 | Msa0012210:CDS | 60.0% | |
| GGCGTAGCCCTTCATATGGG+AGG | - | chr1_1:18355740-18355759 | None:intergenic | 60.0% | |
| ! | CAGGGGCGTAGCCCTTCATA+TGG | - | chr1_1:18355744-18355763 | None:intergenic | 60.0% |
| GGAGCTACCGGAGACAGAGC+CGG | + | chr1_1:18353771-18353790 | Msa0012210:CDS | 65.0% | |
| GGCTTCGGAGATCGTGGTCG+AGG | + | chr1_1:18353804-18353823 | Msa0012210:CDS | 65.0% | |
| GATCGTGGTCGAGGTGGCAG+AGG | + | chr1_1:18353813-18353832 | Msa0012210:CDS | 65.0% | |
| CCAGAGCCGGTCAACGAACC+CGG | + | chr1_1:18354066-18354085 | Msa0012210:CDS | 65.0% | |
| CGTGGTCGAGGTGGCAGAGG+CGG | + | chr1_1:18353816-18353835 | Msa0012210:CDS | 70.0% | |
| GGTGGCAGAGGCGGAGATCG+TGG | + | chr1_1:18353825-18353844 | Msa0012210:CDS | 70.0% | |
| AGAGGCGGAGATCGTGGCCG+TGG | + | chr1_1:18353831-18353850 | Msa0012210:CDS | 70.0% | |
| !! | AGGCGCTGGCCGTCGTGAAG+AGG | + | chr1_1:18353866-18353885 | Msa0012210:CDS | 70.0% |
| ! | CCGGGTTCGTTGACCGGCTC+TGG | - | chr1_1:18354069-18354088 | None:intergenic | 70.0% |
| GGCGGAGATCGTGGCCGTGG+AGG | + | chr1_1:18353834-18353853 | Msa0012210:CDS | 75.0% | |
| CGCCTCTGCGGCGACCTCCA+CGG | - | chr1_1:18353851-18353870 | None:intergenic | 75.0% | |
| CACGACGGCCAGCGCCTCTG+CGG | - | chr1_1:18353863-18353882 | None:intergenic | 75.0% | |
| ! | GGCCGTGGAGGTCGCCGCAG+AGG | + | chr1_1:18353846-18353865 | Msa0012210:CDS | 80.0% |
| !! | GGAGGTCGCCGCAGAGGCGC+TGG | + | chr1_1:18353852-18353871 | Msa0012210:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18353683 | 18356644 | 18353683 | ID=Msa0012210;Name=Msa0012210 |
| chr1_1 | mRNA | 18353683 | 18356644 | 18353683 | ID=Msa0012210-mRNA-1;Parent=Msa0012210;Name=Msa0012210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|1|1|2|194|277 |
| chr1_1 | exon | 18353683 | 18354433 | 18353683 | ID=Msa0012210-mRNA-1:exon:6711;Parent=Msa0012210-mRNA-1 |
| chr1_1 | exon | 18356292 | 18356644 | 18356292 | ID=Msa0012210-mRNA-1:exon:6712;Parent=Msa0012210-mRNA-1 |
| chr1_1 | five_prime_UTR | 18353683 | 18353758 | 18353683 | ID=Msa0012210-mRNA-1:five_prime_utr;Parent=Msa0012210-mRNA-1 |
| chr1_1 | CDS | 18353759 | 18354433 | 18353759 | ID=Msa0012210-mRNA-1:cds;Parent=Msa0012210-mRNA-1 |
| chr1_1 | CDS | 18356292 | 18356450 | 18356292 | ID=Msa0012210-mRNA-1:cds;Parent=Msa0012210-mRNA-1 |
| chr1_1 | three_prime_UTR | 18356451 | 18356644 | 18356451 | ID=Msa0012210-mRNA-1:three_prime_utr;Parent=Msa0012210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
