Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086160 | sp|P35684|RL3_ORYSJ | 84.576 | 389 | 60 | 0 | 24 | 412 | 1 | 389 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086160 | G7IBY1 | 99.743 | 389 | 1 | 0 | 24 | 412 | 1 | 389 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012210 | Msa0086160 | 0.808610 | 2.845431e-50 | -8.615850e-47 |
| Msa0016340 | Msa0086160 | 0.804253 | 2.360257e-49 | -8.615850e-47 |
| Msa0028150 | Msa0086160 | 0.810075 | 1.380234e-50 | -8.615850e-47 |
| Msa0042510 | Msa0086160 | 0.814660 | 1.376143e-51 | -8.615850e-47 |
| Msa0071760 | Msa0086160 | 0.809046 | 2.295921e-50 | -8.615850e-47 |
| Msa0075730 | Msa0086160 | 0.807023 | 6.187333e-50 | -8.615850e-47 |
| Msa0079560 | Msa0086160 | 0.844686 | 6.481755e-59 | -8.615850e-47 |
| Msa0086160 | Msa0087910 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
| Msa0086160 | Msa0089540 | 0.837854 | 4.065921e-57 | -8.615850e-47 |
| Msa0086160 | Msa0114600 | 0.867951 | 9.369578e-66 | -8.615850e-47 |
| Msa0086160 | Msa0123290 | 0.824895 | 6.298542e-54 | -8.615850e-47 |
| Msa0086160 | Msa0123790 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0086160 | Msa0127230 | 0.841540 | 4.466219e-58 | -8.615850e-47 |
| Msa0086160 | Msa0128330 | 0.807979 | 3.878498e-50 | -8.615850e-47 |
| Msa0086160 | Msa0132460 | 0.842107 | 3.164409e-58 | -8.615850e-47 |
| Msa0086160 | Msa0134580 | 0.812267 | 4.621092e-51 | -8.615850e-47 |
| Msa0086160 | Msa0167860 | 0.840773 | 7.104412e-58 | -8.615850e-47 |
| Msa0086160 | Msa0174580 | 0.813414 | 2.590887e-51 | -8.615850e-47 |
| Msa0086160 | Msa0182050 | 0.840889 | 6.624351e-58 | -8.615850e-47 |
| Msa0086160 | Msa0182100 | 0.867354 | 1.455903e-65 | -8.615850e-47 |
| Msa0086160 | Msa0188740 | 0.845802 | 3.235137e-59 | -8.615850e-47 |
| Msa0086160 | Msa0192300 | 0.873795 | 1.114748e-67 | -8.615850e-47 |
| Msa0086160 | Msa0220410 | -0.818186 | 2.235293e-52 | -8.615850e-47 |
| Msa0086160 | Msa0234850 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
| Msa0086160 | Msa0237180 | 0.806521 | 7.900970e-50 | -8.615850e-47 |
| Msa0086160 | Msa0270160 | 0.899007 | 3.034460e-77 | -8.615850e-47 |
| Msa0086160 | Msa0277600 | 0.859436 | 4.142404e-63 | -8.615850e-47 |
| Msa0086160 | Msa0301250 | 0.866703 | 2.348828e-65 | -8.615850e-47 |
| Msa0086160 | Msa0313060 | 0.891426 | 4.016035e-74 | -8.615850e-47 |
| Msa0086160 | Msa0315430 | 0.832385 | 9.742088e-56 | -8.615850e-47 |
| Msa0086160 | Msa0371490 | 0.816100 | 6.579864e-52 | -8.615850e-47 |
| Msa0086160 | Msa0373350 | 0.826833 | 2.183005e-54 | -8.615850e-47 |
| Msa0086160 | Msa0374050 | 0.812692 | 3.730013e-51 | -8.615850e-47 |
| Msa0086160 | Msa0377370 | 0.862788 | 3.952722e-64 | -8.615850e-47 |
| Msa0086160 | Msa0387290 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa0086160 | Msa0388520 | 0.837161 | 6.119536e-57 | -8.615850e-47 |
| Msa0086160 | Msa0419710 | 0.848587 | 5.574342e-60 | -8.615850e-47 |
| Msa0086160 | Msa0423230 | 0.816987 | 4.165017e-52 | -8.615850e-47 |
| Msa0086160 | Msa0426250 | 0.812812 | 3.511712e-51 | -8.615850e-47 |
| Msa0086160 | Msa0426940 | 0.824624 | 7.295866e-54 | -8.615850e-47 |
| Msa0086160 | Msa0433060 | 0.897822 | 9.686962e-77 | -8.615850e-47 |
| Msa0086160 | Msa0450150 | 0.888275 | 6.822171e-73 | -8.615850e-47 |
| Msa0086160 | Msa0469430 | 0.845118 | 4.956086e-59 | -8.615850e-47 |
| Msa0086160 | Msa0469740 | 0.812230 | 4.706692e-51 | -8.615850e-47 |
| Msa0086160 | Msa0482560 | 0.820593 | 6.319931e-53 | -8.615850e-47 |
| Msa0086160 | Msa0511760 | 0.811547 | 6.627875e-51 | -8.615850e-47 |
| Msa0086160 | Msa0515110 | 0.832718 | 8.057617e-56 | -8.615850e-47 |
| Msa0086160 | Msa0515560 | 0.803191 | 3.921796e-49 | -8.615850e-47 |
| Msa0086160 | Msa0521730 | 0.878076 | 3.762794e-69 | -8.615850e-47 |
| Msa0086160 | Msa0524680 | 0.894701 | 1.925816e-75 | -8.615850e-47 |
| Msa0086160 | Msa0547920 | 0.861013 | 1.382552e-63 | -8.615850e-47 |
| Msa0086160 | Msa0550490 | 0.805518 | 1.284028e-49 | -8.615850e-47 |
| Msa0086160 | Msa0568380 | 0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa0086160 | Msa0573550 | 0.877962 | 4.122762e-69 | -8.615850e-47 |
| Msa0086160 | Msa0574780 | 0.840748 | 7.213239e-58 | -8.615850e-47 |
| Msa0086160 | Msa0578010 | 0.827104 | 1.880661e-54 | -8.615850e-47 |
| Msa0086160 | Msa0585570 | 0.880319 | 6.054722e-70 | -8.615850e-47 |
| Msa0086160 | Msa0602900 | 0.875943 | 2.067024e-68 | -8.615850e-47 |
| Msa0086160 | Msa0609120 | 0.802539 | 5.348635e-49 | -8.615850e-47 |
| Msa0086160 | Msa0619230 | 0.808322 | 3.278651e-50 | -8.615850e-47 |
| Msa0086160 | Msa0643960 | 0.871234 | 7.979613e-67 | -8.615850e-47 |
| Msa0086160 | Msa0649580 | 0.852214 | 5.346213e-61 | -8.615850e-47 |
| Msa0086160 | Msa0656450 | 0.833674 | 4.657597e-56 | -8.615850e-47 |
| Msa0086160 | Msa0663400 | 0.883170 | 5.626129e-71 | -8.615850e-47 |
| Msa0086160 | Msa0694400 | 0.834074 | 3.698090e-56 | -8.615850e-47 |
| Msa0086160 | Msa0708630 | 0.844637 | 6.682248e-59 | -8.615850e-47 |
| Msa0086160 | Msa0715970 | 0.844938 | 5.543378e-59 | -8.615850e-47 |
| Msa0086160 | Msa0718560 | 0.845072 | 5.101864e-59 | -8.615850e-47 |
| Msa0086160 | Msa0790450 | 0.857164 | 1.967100e-62 | -8.615850e-47 |
| Msa0086160 | Msa0796490 | 0.809245 | 2.081238e-50 | -8.615850e-47 |
| Msa0086160 | Msa0798590 | 0.842927 | 1.917584e-58 | -8.615850e-47 |
| Msa0086160 | Msa0902730 | 0.801863 | 7.364677e-49 | -8.615850e-47 |
| Msa0086160 | Msa0929700 | 0.866521 | 2.682329e-65 | -8.615850e-47 |
| Msa0086160 | Msa0930100 | 0.852214 | 5.346213e-61 | -8.615850e-47 |
| Msa0086160 | Msa0930360 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa0086160 | Msa0930790 | 0.822152 | 2.759889e-53 | -8.615850e-47 |
| Msa0086160 | Msa0930890 | 0.865763 | 4.662864e-65 | -8.615850e-47 |
| Msa0086160 | Msa1004780 | 0.824209 | 9.137886e-54 | -8.615850e-47 |
| Msa0086160 | Msa1013430 | 0.808501 | 3.002914e-50 | -8.615850e-47 |
| Msa0086160 | Msa1025200 | 0.836035 | 1.184418e-56 | -8.615850e-47 |
| Msa0086160 | Msa1025220 | 0.828497 | 8.701495e-55 | -8.615850e-47 |
| Msa0086160 | Msa1026710 | 0.819197 | 1.317647e-52 | -8.615850e-47 |
| Msa0086160 | Msa1031740 | 0.824579 | 7.477477e-54 | -8.615850e-47 |
| Msa0086160 | Msa1068660 | 0.824089 | 9.748630e-54 | -8.615850e-47 |
| Msa0086160 | Msa1070810 | 0.840749 | 7.207759e-58 | -8.615850e-47 |
| Msa0086160 | Msa1082050 | 0.811500 | 6.788505e-51 | -8.615850e-47 |
| Msa0086160 | Msa1085850 | 0.903833 | 2.304498e-79 | -8.615850e-47 |
| Msa0086160 | Msa1118790 | 0.857956 | 1.146205e-62 | -8.615850e-47 |
| Msa0086160 | Msa1126690 | 0.863087 | 3.197022e-64 | -8.615850e-47 |
| Msa0086160 | Msa1130680 | 0.847021 | 1.504567e-59 | -8.615850e-47 |
| Msa0086160 | Msa1144610 | 0.809869 | 1.529058e-50 | -8.615850e-47 |
| Msa0086160 | Msa1158630 | 0.836423 | 9.440293e-57 | -8.615850e-47 |
| Msa0086160 | Msa1165210 | 0.889372 | 2.569959e-73 | -8.615850e-47 |
| Msa0086160 | Msa1219760 | 0.829836 | 4.118857e-55 | -8.615850e-47 |
| Msa0086160 | Msa1227350 | 0.835890 | 1.289148e-56 | -8.615850e-47 |
| Msa0086160 | Msa1235950 | 0.819840 | 9.403081e-53 | -8.615850e-47 |
| Msa0086160 | Msa1235980 | 0.819328 | 1.230172e-52 | -8.615850e-47 |
| Msa0086160 | Msa1237040 | 0.821681 | 3.547348e-53 | -8.615850e-47 |
| Msa0086160 | Msa1255830 | 0.836075 | 1.157011e-56 | -8.615850e-47 |
| Msa0086160 | Msa1255850 | 0.830999 | 2.139459e-55 | -8.615850e-47 |
| Msa0086160 | Msa1269250 | -0.805647 | 1.206755e-49 | -8.615850e-47 |
| Msa0086160 | Msa1296090 | 0.825661 | 4.151332e-54 | -8.615850e-47 |
| Msa0086160 | Msa1317390 | 0.815346 | 9.690653e-52 | -8.615850e-47 |
| Msa0086160 | Msa1330730 | 0.826660 | 2.401885e-54 | -8.615850e-47 |
| Msa0086160 | Msa1333370 | 0.831812 | 1.349962e-55 | -8.615850e-47 |
| Msa0086160 | Msa1341780 | 0.848368 | 6.409885e-60 | -8.615850e-47 |
| Msa0086160 | Msa1347610 | 0.848815 | 4.819421e-60 | -8.615850e-47 |
| Msa0086160 | Msa1351020 | 0.855503 | 6.041442e-62 | -8.615850e-47 |
| Msa0086160 | Msa1367540 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0086160 | Msa1368170 | 0.825405 | 4.771888e-54 | -8.615850e-47 |
| Msa0086160 | Msa1385480 | 0.851868 | 6.705603e-61 | -8.615850e-47 |
| Msa0086160 | Msa1390760 | 0.811788 | 5.875658e-51 | -8.615850e-47 |
| Msa0086160 | Msa1403520 | 0.884410 | 1.964712e-71 | -8.615850e-47 |
| Msa0086160 | Msa1407550 | 0.851625 | 7.858524e-61 | -8.615850e-47 |
| Msa0086160 | Msa1413570 | 0.834976 | 2.194941e-56 | -8.615850e-47 |
| Msa0086160 | Msa1424570 | 0.835356 | 1.759764e-56 | -8.615850e-47 |
| Msa0086160 | Msa1432310 | 0.836703 | 8.012591e-57 | -8.615850e-47 |
| Msa0086160 | Msa1446410 | 0.803458 | 3.452925e-49 | -8.615850e-47 |
| Msa0086160 | Msa1446510 | 0.861288 | 1.139507e-63 | -8.615850e-47 |
| Msa0086160 | Msa1450560 | 0.852700 | 3.886109e-61 | -8.615850e-47 |
| Msa0086160 | Msa1462580 | 0.838468 | 2.824931e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086160 | MtrunA17_Chr1g0201721 | 99.743 | 389 | 1 | 0 | 24 | 412 | 1 | 389 | 0.0 | 799 |
| Msa0086160 | MtrunA17_Chr4g0051121 | 90.746 | 389 | 36 | 0 | 24 | 412 | 1 | 389 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086160 | AT1G43170.1 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.6 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.2 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.3 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.9 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.8 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.7 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G43170.5 | 87.339 | 387 | 49 | 0 | 24 | 410 | 1 | 387 | 0.0 | 695 |
| Msa0086160 | AT1G61580.1 | 85.492 | 386 | 56 | 0 | 24 | 409 | 1 | 386 | 0.0 | 684 |
| Msa0086160 | AT1G43170.4 | 86.054 | 294 | 41 | 0 | 117 | 410 | 11 | 304 | 0.0 | 543 |
Find 139 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATTATACTTCCAATTT+TGG | 0.152169 | 1_2:+66757910 | Msa0086160:three_prime_UTR |
| GGCTTGGTTGGGTCATCCTT+GGG | 0.196053 | 1_2:-66755387 | None:intergenic |
| AAGGAATAAAACACCAAAAT+TGG | 0.248184 | 1_2:-66757923 | None:intergenic |
| TCACTTGAATCTCCATGATA+TGG | 0.254331 | 1_2:-66756990 | None:intergenic |
| TGGCTTGGTTGGGTCATCCT+TGG | 0.260735 | 1_2:-66755388 | None:intergenic |
| TAAATCAAAATTTAAGAAAA+AGG | 0.260866 | 1_2:-66757942 | None:intergenic |
| TGTCAATCATTTCATCCTTC+TGG | 0.271486 | 1_2:-66757089 | None:intergenic |
| CTTGCTGAAAGCCTTCTTCT+TGG | 0.282480 | 1_2:-66756115 | None:intergenic |
| ATCGATACCTCTTCCAAGTT+TGG | 0.285033 | 1_2:+66757658 | Msa0086160:CDS |
| ACCCAAGCTAACTGCCTTCT+TGG | 0.286054 | 1_2:+66755410 | Msa0086160:CDS |
| GCACCCAAGACACGGTTCTT+TGG | 0.287363 | 1_2:+66754907 | Msa0086160:CDS |
| CACCCAAGACACGGTTCTTT+GGG | 0.292688 | 1_2:+66754908 | Msa0086160:CDS |
| TGACGAGCAGCACGCTTTCT+TGG | 0.308401 | 1_2:-66754938 | None:intergenic |
| GTTAGCTTGGGTGGCTTGGT+TGG | 0.310280 | 1_2:-66755399 | None:intergenic |
| TCAGTTTCTCAAGCTGGGTC+TGG | 0.325691 | 1_2:-66756179 | None:intergenic |
| CACCAAAATTGGAAGTATAA+TGG | 0.325747 | 1_2:-66757912 | None:intergenic |
| AAAGTACTGCAGTAATAAAT+AGG | 0.326742 | 1_2:-66757864 | None:intergenic |
| TATCTCAGAGCTTCACAAAA+AGG | 0.335186 | 1_2:+66755930 | Msa0086160:intron |
| TTGAGGAAGGTTGCATGTAT+TGG | 0.358668 | 1_2:+66757198 | Msa0086160:CDS |
| TCAGAGAAGCAAAAGTTCTA+TGG | 0.364679 | 1_2:+66757703 | Msa0086160:CDS |
| GACGCCTCAAAGCTTAATTA+TGG | 0.367105 | 1_2:+66757725 | Msa0086160:exon |
| CTCACCTATCGAACTCAGTC+TGG | 0.367617 | 1_2:-66757347 | None:intergenic |
| TTAGCTTGGGTGGCTTGGTT+GGG | 0.372233 | 1_2:-66755398 | None:intergenic |
| GGCAGTTAGCTTGGGTGGCT+TGG | 0.374534 | 1_2:-66755403 | None:intergenic |
| ACTTCTTCAGTTTCTCAAGC+TGG | 0.375617 | 1_2:-66756185 | None:intergenic |
| CAGAGTAATAACCCTCTTCT+TGG | 0.375680 | 1_2:-66757575 | None:intergenic |
| TTTGCTTCTCTGATGTTGTC+TGG | 0.376238 | 1_2:-66757693 | None:intergenic |
| TCTTTCACTGTTGCCAGAGC+TGG | 0.398591 | 1_2:+66757243 | Msa0086160:CDS |
| CTTCTTCAGTTTCTCAAGCT+GGG | 0.407032 | 1_2:-66756184 | None:intergenic |
| GACGAGCAGCACGCTTTCTT+GGG | 0.410830 | 1_2:-66754937 | None:intergenic |
| AACTGCCTTCTTGGGTTACA+AGG | 0.417572 | 1_2:+66755419 | Msa0086160:CDS |
| CACTTGAATCTCCATGATAT+GGG | 0.428524 | 1_2:-66756989 | None:intergenic |
| CCCAAGCTAACTGCCTTCTT+GGG | 0.428836 | 1_2:+66755411 | Msa0086160:CDS |
| ATGGGTGGTTTCCCACACTA+TGG | 0.429746 | 1_2:+66757505 | Msa0086160:CDS |
| ATTTACAAGCTCGGCAAAGT+TGG | 0.433680 | 1_2:+66757306 | Msa0086160:CDS |
| ACCCAAGAAGGCAGTTAGCT+TGG | 0.433816 | 1_2:-66755412 | None:intergenic |
| ATCCCAAAGAACCGTGTCTT+GGG | 0.433824 | 1_2:-66754910 | None:intergenic |
| TTAGAACATTGAACACTGTA+TGG | 0.438637 | 1_2:+66756037 | Msa0086160:CDS |
| ATGGTTGTTGTCGGTGTTGT+GGG | 0.442307 | 1_2:+66755991 | Msa0086160:CDS |
| GAAACGACCATGTCCAAACT+TGG | 0.447320 | 1_2:-66757671 | None:intergenic |
| ATCTCAGATCAGGAAAATGA+AGG | 0.447874 | 1_2:+66756948 | Msa0086160:intron |
| CGAACTCAGTCTGGGCGTCA+TGG | 0.449202 | 1_2:-66757338 | None:intergenic |
| GCCTTCTTGGGTTACAAGGC+TGG | 0.450941 | 1_2:+66755423 | Msa0086160:CDS |
| TGGGTATACTTACTGGATCC+TGG | 0.456542 | 1_2:-66755477 | None:intergenic |
| AGCGTAGGTTCTACAAGAAC+TGG | 0.457230 | 1_2:+66756085 | Msa0086160:CDS |
| TGAAGGTGTTGTTACGCGTT+GGG | 0.459436 | 1_2:+66757140 | Msa0086160:CDS |
| ATACAACTTCTTTGAGAAGC+AGG | 0.459725 | 1_2:+66757047 | Msa0086160:CDS |
| ACCCCTCCCATGGTTGTTGT+CGG | 0.462754 | 1_2:+66755982 | Msa0086160:CDS |
| GTCTTCCTCGTAAGACTCAC+AGG | 0.464950 | 1_2:+66757172 | Msa0086160:CDS |
| TGAGAAAGACATTACACCTA+TGG | 0.467448 | 1_2:+66757486 | Msa0086160:CDS |
| GTAAGACTCACAGGGGTTTG+AGG | 0.468820 | 1_2:+66757181 | Msa0086160:CDS |
| CCCAAGAAGGCAGTTAGCTT+GGG | 0.469247 | 1_2:-66755411 | None:intergenic |
| ACCTTCATAACCTTTACCCT+TGG | 0.469618 | 1_2:-66757124 | None:intergenic |
| ACTACCATAATTAAGCTTTG+AGG | 0.473296 | 1_2:-66757729 | None:intergenic |
| ATGAAGGTGTTGTTACGCGT+TGG | 0.474804 | 1_2:+66757139 | Msa0086160:CDS |
| GATGAAATGATTGACATCAT+TGG | 0.474891 | 1_2:+66757096 | Msa0086160:CDS |
| TTCTGGAACACAGCATCAAT+AGG | 0.475795 | 1_2:-66757072 | None:intergenic |
| CATGGTTGTTGTCGGTGTTG+TGG | 0.479589 | 1_2:+66755990 | Msa0086160:CDS |
| GACTTCTCGTCTTGCTCTTG+AGG | 0.480840 | 1_2:+66757618 | Msa0086160:CDS |
| TGTTCAGCTCAGTTCTGTGA+TGG | 0.485951 | 1_2:-66757278 | None:intergenic |
| AATCCCAAAGAACCGTGTCT+TGG | 0.489699 | 1_2:-66754911 | None:intergenic |
| AACAAGAAAATTTACAAGCT+CGG | 0.491496 | 1_2:+66757297 | Msa0086160:CDS |
| AGAGTAATAACCCTCTTCTT+GGG | 0.492275 | 1_2:-66757574 | None:intergenic |
| GACGAGAAGTCTGCTTAAGA+AGG | 0.502167 | 1_2:-66757606 | None:intergenic |
| ACAGAAGAAAGCCCATATCA+TGG | 0.505342 | 1_2:+66756978 | Msa0086160:CDS |
| GCTGCTCGTCACAGAGGAAA+AGG | 0.506457 | 1_2:+66754950 | Msa0086160:CDS |
| AGGGGTCTCGATGATTGTCA+CGG | 0.507650 | 1_2:-66755965 | None:intergenic |
| GCTTGGTTGGGTCATCCTTG+GGG | 0.515078 | 1_2:-66755386 | None:intergenic |
| GTCAGAGAAGTCGAGAAGCC+AGG | 0.515408 | 1_2:+66755459 | Msa0086160:CDS |
| GTATCCGTTCTGACCAGCTC+TGG | 0.518044 | 1_2:-66757256 | None:intergenic |
| ATGATCAAGGGAGGCTGTGT+TGG | 0.526401 | 1_2:+66757550 | Msa0086160:CDS |
| CCGTGTGTTGGCTCACACCC+AGG | 0.526427 | 1_2:+66756221 | Msa0086160:CDS |
| CGGTGGTACCATCGCTCAGA+AGG | 0.529087 | 1_2:+66757014 | Msa0086160:CDS |
| GAACTCAGTCTGGGCGTCAT+GGG | 0.529915 | 1_2:-66757337 | None:intergenic |
| ATTGGAGTGACCAAGGGTAA+AGG | 0.537647 | 1_2:+66757114 | Msa0086160:CDS |
| ACCAAGGGTAAAGGTTATGA+AGG | 0.540699 | 1_2:+66757123 | Msa0086160:CDS |
| CGAGTTATTAAAATGTCAGA+TGG | 0.541412 | 1_2:-66757819 | None:intergenic |
| GACAACAGCAGCAAAAGCTT+AGG | 0.542238 | 1_2:+66754767 | Msa0086160:CDS |
| TCTCAGATCAGGAAAATGAA+GGG | 0.547784 | 1_2:+66756949 | Msa0086160:intron |
| CACAACACCGACAACAACCA+TGG | 0.549447 | 1_2:-66755989 | None:intergenic |
| GTTCAATGTTCTAAGACCAC+GGG | 0.551523 | 1_2:-66756028 | None:intergenic |
| ACCAGCCTTGTAACCCAAGA+AGG | 0.552644 | 1_2:-66755424 | None:intergenic |
| ACCGACAACAACCATGGGAG+GGG | 0.558376 | 1_2:-66755983 | None:intergenic |
| AAGAAGGCAGTTAGCTTGGG+TGG | 0.559172 | 1_2:-66755408 | None:intergenic |
| AGGTTGCATGTATTGGAGCT+TGG | 0.565352 | 1_2:+66757205 | Msa0086160:CDS |
| TGTTCAATGTTCTAAGACCA+CGG | 0.566021 | 1_2:-66756029 | None:intergenic |
| CTGGTGCAAGTCCAAGAAGA+AGG | 0.567366 | 1_2:+66756104 | Msa0086160:CDS |
| TCTCGACTTCTCTGACAATG+TGG | 0.567495 | 1_2:-66755452 | None:intergenic |
| GACTCACAGGGGTTTGAGGA+AGG | 0.568790 | 1_2:+66757185 | Msa0086160:CDS |
| AGTACATAGTTTAAAACAGA+TGG | 0.571470 | 1_2:-66757792 | None:intergenic |
| AAGTCTGCTTAAGAAGGGAC+TGG | 0.577488 | 1_2:-66757600 | None:intergenic |
| AAGCAGTATGAAAGTGATGA+GGG | 0.580782 | 1_2:+66756144 | Msa0086160:CDS |
| ACCTCTTCCAAGTTTGGACA+TGG | 0.582976 | 1_2:+66757664 | Msa0086160:CDS |
| TCTTCCTCGTAAGACTCACA+GGG | 0.584859 | 1_2:+66757173 | Msa0086160:CDS |
| CACCGACAACAACCATGGGA+GGG | 0.590277 | 1_2:-66755984 | None:intergenic |
| CTCGACTTCTCTGACAATGT+GGG | 0.590618 | 1_2:-66755451 | None:intergenic |
| TCACCTATCGAACTCAGTCT+GGG | 0.593125 | 1_2:-66757346 | None:intergenic |
| ACGCCCAGACTGAGTTCGAT+AGG | 0.595359 | 1_2:+66757343 | Msa0086160:CDS |
| GAGAAAGACATTACACCTAT+GGG | 0.596080 | 1_2:+66757487 | Msa0086160:CDS |
| GGGGTCTCGATGATTGTCAC+GGG | 0.596471 | 1_2:-66755964 | None:intergenic |
| ACAACACCGACAACAACCAT+GGG | 0.596534 | 1_2:-66755988 | None:intergenic |
| TGACATCATTGGAGTGACCA+AGG | 0.598559 | 1_2:+66757107 | Msa0086160:CDS |
| TGCAGTGAAGGCTTTCCCCA+AGG | 0.599253 | 1_2:+66755371 | Msa0086160:intron |
| ACCATGTCCAAACTTGGAAG+AGG | 0.600841 | 1_2:-66757665 | None:intergenic |
| CCCACACTATGGTATTGTCA+AGG | 0.605764 | 1_2:+66757516 | Msa0086160:CDS |
| ACAGTGAAAGAAACTCTAGC+AGG | 0.609701 | 1_2:-66757231 | None:intergenic |
| CTGTGTTGGTCCCAAGAAGA+GGG | 0.610053 | 1_2:+66757564 | Msa0086160:CDS |
| TGCAACTGTTATCCGTGTGT+TGG | 0.610763 | 1_2:+66756209 | Msa0086160:CDS |
| TGGTACCATCGCTCAGAAGG+TGG | 0.611098 | 1_2:+66757017 | Msa0086160:CDS |
| ACGAGAAGTCTGCTTAAGAA+GGG | 0.612938 | 1_2:-66757605 | None:intergenic |
| AAAGCAGTATGAAAGTGATG+AGG | 0.613214 | 1_2:+66756143 | Msa0086160:CDS |
| GCTGTGTTGGTCCCAAGAAG+AGG | 0.613945 | 1_2:+66757563 | Msa0086160:CDS |
| AAGTTCGAGCACCCAAGACA+CGG | 0.616675 | 1_2:+66754899 | Msa0086160:CDS |
| GTTGCCAGAGCTGGTCAGAA+CGG | 0.617265 | 1_2:+66757252 | Msa0086160:CDS |
| AATCATCGAGACCCCTCCCA+TGG | 0.618819 | 1_2:+66755972 | Msa0086160:CDS |
| CAAGCTCGGCAAAGTTGGAG+AGG | 0.619055 | 1_2:+66757311 | Msa0086160:CDS |
| TGAGTGAGGAAATTAAGCGT+AGG | 0.620145 | 1_2:+66756070 | Msa0086160:CDS |
| CCTGGGTGTGAGCCAACACA+CGG | 0.624582 | 1_2:-66756221 | None:intergenic |
| AAAGTCCACCTTCTGAGCGA+TGG | 0.625795 | 1_2:-66757022 | None:intergenic |
| CCTTGACAATACCATAGTGT+GGG | 0.626411 | 1_2:-66757516 | None:intergenic |
| GAAGGTGTTGTTACGCGTTG+GGG | 0.628349 | 1_2:+66757141 | Msa0086160:CDS |
| GACATCATTGGAGTGACCAA+GGG | 0.628824 | 1_2:+66757108 | Msa0086160:CDS |
| TATTGATGCTGTGTTCCAGA+AGG | 0.629359 | 1_2:+66757074 | Msa0086160:CDS |
| ACACCGACAACAACCATGGG+AGG | 0.629529 | 1_2:-66755985 | None:intergenic |
| ATCATGGAGATTCAAGTGAA+CGG | 0.637492 | 1_2:+66756994 | Msa0086160:CDS |
| TAGTGTGGGAAACCACCCAT+AGG | 0.638601 | 1_2:-66757502 | None:intergenic |
| TCCTTGACAATACCATAGTG+TGG | 0.646452 | 1_2:-66757517 | None:intergenic |
| ACACTTCACTTGCGTAGCAG+CGG | 0.649010 | 1_2:+66754742 | Msa0086160:CDS |
| AAAGACATTACACCTATGGG+TGG | 0.665025 | 1_2:+66757490 | Msa0086160:CDS |
| AAACCCCTGTGAGTCTTACG+AGG | 0.675290 | 1_2:-66757177 | None:intergenic |
| AGGAAAACTAAAATAACCCG+AGG | 0.683530 | 1_2:-66757844 | None:intergenic |
| AAGCGTGCTGCTCGTCACAG+AGG | 0.692287 | 1_2:+66754944 | Msa0086160:CDS |
| ATGGACTCAGCATTTGAGTG+AGG | 0.693670 | 1_2:+66756056 | Msa0086160:CDS |
| ACACTATGGTATTGTCAAGG+AGG | 0.696259 | 1_2:+66757519 | Msa0086160:CDS |
| AGCAGTATGAAAGTGATGAG+GGG | 0.718906 | 1_2:+66756145 | Msa0086160:CDS |
| ATGGAGATTCAAGTGAACGG+TGG | 0.740588 | 1_2:+66756997 | Msa0086160:CDS |
| TTCAATGTTCTAAGACCACG+GGG | 0.753117 | 1_2:-66756027 | None:intergenic |
| CTTCCTCGTAAGACTCACAG+GGG | 0.755519 | 1_2:+66757174 | Msa0086160:CDS |
| GGTTATGTGAAAACTCCCCG+TGG | 0.767480 | 1_2:+66756012 | Msa0086160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTTCTTAAAAACAT+TGG | + | chr1_2:66755277-66755296 | Msa0086160:intron | 10.0% |
| !!! | TATGATTTTTTTTGTTTAAT+TGG | + | chr1_2:66755309-66755328 | Msa0086160:intron | 10.0% |
| !!! | AATGATATCATAAATTTTTT+GGG | - | chr1_2:66755565-66755584 | None:intergenic | 10.0% |
| !!! | AAATGATATCATAAATTTTT+TGG | - | chr1_2:66755566-66755585 | None:intergenic | 10.0% |
| !!! | TATCATTTATTTGATATTTT+TGG | + | chr1_2:66755578-66755597 | Msa0086160:intron | 10.0% |
| !!! | TATTTTATTTTTGAAACATA+GGG | - | chr1_2:66755741-66755760 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTTTGAAACAT+AGG | - | chr1_2:66755742-66755761 | None:intergenic | 10.0% |
| !!! | TTGGATTTATTTTTTATATT+TGG | + | chr1_2:66756729-66756748 | Msa0086160:intron | 10.0% |
| !! | TAAATCAAAATTTAAGAAAA+AGG | - | chr1_2:66757945-66757964 | None:intergenic | 10.0% |
| !! | TTAACAAAATTTCAATTACA+AGG | - | chr1_2:66755018-66755037 | None:intergenic | 15.0% |
| !! | ATTGGATCTAATTATATAAT+TGG | + | chr1_2:66755067-66755086 | Msa0086160:intron | 15.0% |
| !! | CTAATATCATAGTTATAATA+AGG | - | chr1_2:66755094-66755113 | None:intergenic | 15.0% |
| !! | TAAATATGATTAAATAAAGC+AGG | - | chr1_2:66755211-66755230 | None:intergenic | 15.0% |
| !!! | AATAAAAAACTTGTTATCAA+GGG | - | chr1_2:66755250-66755269 | None:intergenic | 15.0% |
| !!! | ATTTAATTTGATGAATGTTT+AGG | + | chr1_2:66755522-66755541 | Msa0086160:intron | 15.0% |
| !!! | ATTTTATTTTTGAAACATAG+GGG | - | chr1_2:66755740-66755759 | None:intergenic | 15.0% |
| !! | TATCTAACAATTATCATAAT+AGG | + | chr1_2:66756822-66756841 | Msa0086160:intron | 15.0% |
| !!! | CGATAATTTTAAATAACTAA+TGG | + | chr1_2:66756878-66756897 | Msa0086160:intron | 15.0% |
| !! | ACAACATAATGATAAGAAAT+GGG | - | chr1_2:66754989-66755008 | None:intergenic | 20.0% |
| !! | AACAACATAATGATAAGAAA+TGG | - | chr1_2:66754990-66755009 | None:intergenic | 20.0% |
| !!! | TAAAATGACAATCATTTTCT+TGG | + | chr1_2:66755040-66755059 | Msa0086160:intron | 20.0% |
| !! | GTCAAATTACATATTCATAA+GGG | - | chr1_2:66755189-66755208 | None:intergenic | 20.0% |
| !!! | CAATAAAAAACTTGTTATCA+AGG | - | chr1_2:66755251-66755270 | None:intergenic | 20.0% |
| !!! | GTATTTTTACCTCAAATTAT+AGG | + | chr1_2:66755606-66755625 | Msa0086160:intron | 20.0% |
| !! | TTAAGCATTTCAAAAAATCA+GGG | - | chr1_2:66755894-66755913 | None:intergenic | 20.0% |
| !!! | CTAGATTTTTCTTAAAAGTT+AGG | - | chr1_2:66756492-66756511 | None:intergenic | 20.0% |
| !!! | TTTATTTTGGATGATGTTTT+TGG | + | chr1_2:66756531-66756550 | Msa0086160:intron | 20.0% |
| !!! | ATTTTTTATATTTGGCAGTA+TGG | + | chr1_2:66756737-66756756 | Msa0086160:intron | 20.0% |
| ! | TGAATTATAGGTTTGAGAAT+GGG | - | chr1_2:66754801-66754820 | None:intergenic | 25.0% |
| ! | ATGAATTATAGGTTTGAGAA+TGG | - | chr1_2:66754802-66754821 | None:intergenic | 25.0% |
| ! | ATGTTTGAGGAATGAATTAT+AGG | - | chr1_2:66754813-66754832 | None:intergenic | 25.0% |
| !!! | TTGTTGTTATTGTTGTTTGA+AGG | + | chr1_2:66754854-66754873 | Msa0086160:intron | 25.0% |
| !! | AATCATTTTCTTGGTTAGAT+TGG | + | chr1_2:66755049-66755068 | Msa0086160:intron | 25.0% |
| ! | GGTCAAATTACATATTCATA+AGG | - | chr1_2:66755190-66755209 | None:intergenic | 25.0% |
| ! | TAAATGAATCAAAGCTTGAT+GGG | - | chr1_2:66755499-66755518 | None:intergenic | 25.0% |
| ! | TTCAGTGAAAAACTAAACAA+AGG | - | chr1_2:66755693-66755712 | None:intergenic | 25.0% |
| ! | TTTGGCTGAAAATGAATATT+GGG | - | chr1_2:66755780-66755799 | None:intergenic | 25.0% |
| ! | ATTTGGCTGAAAATGAATAT+TGG | - | chr1_2:66755781-66755800 | None:intergenic | 25.0% |
| ! | ATAAAATGCAAAACCAGATT+TGG | - | chr1_2:66755798-66755817 | None:intergenic | 25.0% |
| !! | TAATGTGTTATTGTTGATGT+AGG | + | chr1_2:66755853-66755872 | Msa0086160:intron | 25.0% |
| ! | TAAGCATTTCAAAAAATCAG+GGG | - | chr1_2:66755893-66755912 | None:intergenic | 25.0% |
| ! | GTTAAGCATTTCAAAAAATC+AGG | - | chr1_2:66755895-66755914 | None:intergenic | 25.0% |
| !! | CTTTTGCTTCTCATTATATT+AGG | + | chr1_2:66756275-66756294 | Msa0086160:intron | 25.0% |
| ! | AACAAGAAAATTTACAAGCT+CGG | + | chr1_2:66757297-66757316 | Msa0086160:CDS | 25.0% |
| !! | AGTACATAGTTTAAAACAGA+TGG | - | chr1_2:66757795-66757814 | None:intergenic | 25.0% |
| !!! | AAAGTACTGCAGTAATAAAT+AGG | - | chr1_2:66757867-66757886 | None:intergenic | 25.0% |
| !! | TTCCATTATACTTCCAATTT+TGG | + | chr1_2:66757910-66757929 | Msa0086160:three_prime_UTR | 25.0% |
| ! | AAGGAATAAAACACCAAAAT+TGG | - | chr1_2:66757926-66757945 | None:intergenic | 25.0% |
| !! | TTGTTATTGTTGTTTGAAGG+TGG | + | chr1_2:66754857-66754876 | Msa0086160:intron | 30.0% |
| TATCTGAGTGTAACTTAACT+TGG | + | chr1_2:66755335-66755354 | Msa0086160:intron | 30.0% | |
| GTAAATGAATCAAAGCTTGA+TGG | - | chr1_2:66755500-66755519 | None:intergenic | 30.0% | |
| AACTTCTCTCCTATAATTTG+AGG | - | chr1_2:66755618-66755637 | None:intergenic | 30.0% | |
| !! | ACTTTGAAACATGTAATCTC+AGG | - | chr1_2:66755652-66755671 | None:intergenic | 30.0% |
| ! | TATTCATTTTCAGCCAAATC+TGG | + | chr1_2:66755782-66755801 | Msa0086160:intron | 30.0% |
| TGTGTTCTCTTACATTTACA+TGG | + | chr1_2:66755826-66755845 | Msa0086160:intron | 30.0% | |
| TTAGAACATTGAACACTGTA+TGG | + | chr1_2:66756037-66756056 | Msa0086160:CDS | 30.0% | |
| ACAGAAATAGACAGCATATT+CGG | - | chr1_2:66756253-66756272 | None:intergenic | 30.0% | |
| TTGCTTCTCATTATATTAGG+AGG | + | chr1_2:66756278-66756297 | Msa0086160:intron | 30.0% | |
| TCATCTCAAAAAGCAAAGAA+AGG | - | chr1_2:66756372-66756391 | None:intergenic | 30.0% | |
| AAATAAAGTTCCAGAACTAC+TGG | - | chr1_2:66756518-66756537 | None:intergenic | 30.0% | |
| !!! | GTAGTTCTGGAACTTTATTT+TGG | + | chr1_2:66756518-66756537 | Msa0086160:intron | 30.0% |
| !! | AGTCACAATTTTGATACTAG+TGG | + | chr1_2:66756561-66756580 | Msa0086160:intron | 30.0% |
| !! | ATTTTCCTGATCTGAGATAA+AGG | - | chr1_2:66756946-66756965 | None:intergenic | 30.0% |
| GATGAAATGATTGACATCAT+TGG | + | chr1_2:66757096-66757115 | Msa0086160:CDS | 30.0% | |
| GTTGCAATAGATTTCTGTTT+AGG | + | chr1_2:66757393-66757412 | Msa0086160:intron | 30.0% | |
| CAAAAAAGGTTGGATAAGTT+TGG | - | chr1_2:66757456-66757475 | None:intergenic | 30.0% | |
| !!! | ATCCAACCTTTTTTGTTAAC+AGG | + | chr1_2:66757461-66757480 | Msa0086160:intron | 30.0% |
| ACTACCATAATTAAGCTTTG+AGG | - | chr1_2:66757732-66757751 | None:intergenic | 30.0% | |
| !!! | TGGTAGTAGTTTTGAAATGT+TGG | + | chr1_2:66757745-66757764 | Msa0086160:three_prime_UTR | 30.0% |
| !!! | GGTAGTAGTTTTGAAATGTT+GGG | + | chr1_2:66757746-66757765 | Msa0086160:three_prime_UTR | 30.0% |
| CGAGTTATTAAAATGTCAGA+TGG | - | chr1_2:66757822-66757841 | None:intergenic | 30.0% | |
| !! | CATTTTAATAACTCGATCCT+CGG | + | chr1_2:66757827-66757846 | Msa0086160:three_prime_UTR | 30.0% |
| !! | ATTTTAATAACTCGATCCTC+GGG | + | chr1_2:66757828-66757847 | Msa0086160:three_prime_UTR | 30.0% |
| ! | CACCAAAATTGGAAGTATAA+TGG | - | chr1_2:66757915-66757934 | None:intergenic | 30.0% |
| GAACGATGATACAATGTTTG+AGG | - | chr1_2:66754826-66754845 | None:intergenic | 35.0% | |
| ! | TGAGTGTAACTTAACTTGGT+TGG | + | chr1_2:66755339-66755358 | Msa0086160:intron | 35.0% |
| !! | TGTGAAGCTCTGAGATAATA+GGG | - | chr1_2:66755927-66755946 | None:intergenic | 35.0% |
| !! | TTGTGAAGCTCTGAGATAAT+AGG | - | chr1_2:66755928-66755947 | None:intergenic | 35.0% |
| TATCTCAGAGCTTCACAAAA+AGG | + | chr1_2:66755930-66755949 | Msa0086160:intron | 35.0% | |
| !! | TGTTCAATGTTCTAAGACCA+CGG | - | chr1_2:66756032-66756051 | None:intergenic | 35.0% |
| AAAGCAGTATGAAAGTGATG+AGG | + | chr1_2:66756143-66756162 | Msa0086160:CDS | 35.0% | |
| AAGCAGTATGAAAGTGATGA+GGG | + | chr1_2:66756144-66756163 | Msa0086160:CDS | 35.0% | |
| ACTAAATCAGAAATCTCGTG+TGG | - | chr1_2:66756450-66756469 | None:intergenic | 35.0% | |
| ACGAGATTTCTGACTCTTAT+TGG | + | chr1_2:66756710-66756729 | Msa0086160:intron | 35.0% | |
| GTTTACCTTTATCTCAGATC+AGG | + | chr1_2:66756938-66756957 | Msa0086160:intron | 35.0% | |
| ATCTCAGATCAGGAAAATGA+AGG | + | chr1_2:66756948-66756967 | Msa0086160:intron | 35.0% | |
| TCTCAGATCAGGAAAATGAA+GGG | + | chr1_2:66756949-66756968 | Msa0086160:intron | 35.0% | |
| CACTTGAATCTCCATGATAT+GGG | - | chr1_2:66756992-66757011 | None:intergenic | 35.0% | |
| TCACTTGAATCTCCATGATA+TGG | - | chr1_2:66756993-66757012 | None:intergenic | 35.0% | |
| ATCATGGAGATTCAAGTGAA+CGG | + | chr1_2:66756994-66757013 | Msa0086160:CDS | 35.0% | |
| ! | ATACAACTTCTTTGAGAAGC+AGG | + | chr1_2:66757047-66757066 | Msa0086160:CDS | 35.0% |
| TGTCAATCATTTCATCCTTC+TGG | - | chr1_2:66757092-66757111 | None:intergenic | 35.0% | |
| AACATGCTCTGATTGTTCAT+TGG | + | chr1_2:66757371-66757390 | Msa0086160:intron | 35.0% | |
| GTCCTGTTAACAAAAAAGGT+TGG | - | chr1_2:66757466-66757485 | None:intergenic | 35.0% | |
| CTCAGTCCTGTTAACAAAAA+AGG | - | chr1_2:66757470-66757489 | None:intergenic | 35.0% | |
| TGAGAAAGACATTACACCTA+TGG | + | chr1_2:66757486-66757505 | Msa0086160:CDS | 35.0% | |
| GAGAAAGACATTACACCTAT+GGG | + | chr1_2:66757487-66757506 | Msa0086160:CDS | 35.0% | |
| ! | GAGGATTTTCTGATGATCAA+GGG | + | chr1_2:66757538-66757557 | Msa0086160:CDS | 35.0% |
| AGAGTAATAACCCTCTTCTT+GGG | - | chr1_2:66757577-66757596 | None:intergenic | 35.0% | |
| TCAGAGAAGCAAAAGTTCTA+TGG | + | chr1_2:66757703-66757722 | Msa0086160:CDS | 35.0% | |
| AGGAAAACTAAAATAACCCG+AGG | - | chr1_2:66757847-66757866 | None:intergenic | 35.0% | |
| GTGGAAAAAAGATGTCTCAC+AGG | + | chr1_2:66754876-66754895 | Msa0086160:CDS | 40.0% | |
| TCAACAGCATTCAAGTGTTC+AGG | - | chr1_2:66755132-66755151 | None:intergenic | 40.0% | |
| ! | AGCTTGATGGGTATACTTAC+TGG | - | chr1_2:66755487-66755506 | None:intergenic | 40.0% |
| !! | TTCAATGTTCTAAGACCACG+GGG | - | chr1_2:66756030-66756049 | None:intergenic | 40.0% |
| !! | GTTCAATGTTCTAAGACCAC+GGG | - | chr1_2:66756031-66756050 | None:intergenic | 40.0% |
| TGAGTGAGGAAATTAAGCGT+AGG | + | chr1_2:66756070-66756089 | Msa0086160:CDS | 40.0% | |
| AGCAGTATGAAAGTGATGAG+GGG | + | chr1_2:66756145-66756164 | Msa0086160:CDS | 40.0% | |
| CTTCTTCAGTTTCTCAAGCT+GGG | - | chr1_2:66756187-66756206 | None:intergenic | 40.0% | |
| ACTTCTTCAGTTTCTCAAGC+TGG | - | chr1_2:66756188-66756207 | None:intergenic | 40.0% | |
| AATCTAGTCACCAGTAGTTC+TGG | + | chr1_2:66756505-66756524 | Msa0086160:intron | 40.0% | |
| TAAGAGTCAGAAATCTCGTG+TGG | - | chr1_2:66756709-66756728 | None:intergenic | 40.0% | |
| TCAATGACTCTCGACTCATA+TGG | + | chr1_2:66756760-66756779 | Msa0086160:intron | 40.0% | |
| ACAGAAGAAAGCCCATATCA+TGG | + | chr1_2:66756978-66756997 | Msa0086160:CDS | 40.0% | |
| !! | TTCTGGAACACAGCATCAAT+AGG | - | chr1_2:66757075-66757094 | None:intergenic | 40.0% |
| TATTGATGCTGTGTTCCAGA+AGG | + | chr1_2:66757074-66757093 | Msa0086160:CDS | 40.0% | |
| ACCAAGGGTAAAGGTTATGA+AGG | + | chr1_2:66757123-66757142 | Msa0086160:CDS | 40.0% | |
| ACCTTCATAACCTTTACCCT+TGG | - | chr1_2:66757127-66757146 | None:intergenic | 40.0% | |
| TTGAGGAAGGTTGCATGTAT+TGG | + | chr1_2:66757198-66757217 | Msa0086160:CDS | 40.0% | |
| ACAGTGAAAGAAACTCTAGC+AGG | - | chr1_2:66757234-66757253 | None:intergenic | 40.0% | |
| ATTTACAAGCTCGGCAAAGT+TGG | + | chr1_2:66757306-66757325 | Msa0086160:CDS | 40.0% | |
| AAAGACATTACACCTATGGG+TGG | + | chr1_2:66757490-66757509 | Msa0086160:CDS | 40.0% | |
| CCTTGACAATACCATAGTGT+GGG | - | chr1_2:66757519-66757538 | None:intergenic | 40.0% | |
| TCCTTGACAATACCATAGTG+TGG | - | chr1_2:66757520-66757539 | None:intergenic | 40.0% | |
| ACACTATGGTATTGTCAAGG+AGG | + | chr1_2:66757519-66757538 | Msa0086160:CDS | 40.0% | |
| ! | GGAGGATTTTCTGATGATCA+AGG | + | chr1_2:66757537-66757556 | Msa0086160:CDS | 40.0% |
| ! | GATTTTCTGATGATCAAGGG+AGG | + | chr1_2:66757541-66757560 | Msa0086160:CDS | 40.0% |
| CAGAGTAATAACCCTCTTCT+TGG | - | chr1_2:66757578-66757597 | None:intergenic | 40.0% | |
| ACGAGAAGTCTGCTTAAGAA+GGG | - | chr1_2:66757608-66757627 | None:intergenic | 40.0% | |
| ATCGATACCTCTTCCAAGTT+TGG | + | chr1_2:66757658-66757677 | Msa0086160:CDS | 40.0% | |
| TTTGCTTCTCTGATGTTGTC+TGG | - | chr1_2:66757696-66757715 | None:intergenic | 40.0% | |
| GACGCCTCAAAGCTTAATTA+TGG | + | chr1_2:66757725-66757744 | Msa0086160:exon | 40.0% | |
| GACAACAGCAGCAAAAGCTT+AGG | + | chr1_2:66754767-66754786 | Msa0086160:CDS | 45.0% | |
| ATCCCAAAGAACCGTGTCTT+GGG | - | chr1_2:66754913-66754932 | None:intergenic | 45.0% | |
| AATCCCAAAGAACCGTGTCT+TGG | - | chr1_2:66754914-66754933 | None:intergenic | 45.0% | |
| AACTGCCTTCTTGGGTTACA+AGG | + | chr1_2:66755419-66755438 | Msa0086160:CDS | 45.0% | |
| CTCGACTTCTCTGACAATGT+GGG | - | chr1_2:66755454-66755473 | None:intergenic | 45.0% | |
| TCTCGACTTCTCTGACAATG+TGG | - | chr1_2:66755455-66755474 | None:intergenic | 45.0% | |
| TGGGTATACTTACTGGATCC+TGG | - | chr1_2:66755480-66755499 | None:intergenic | 45.0% | |
| ACAACACCGACAACAACCAT+GGG | - | chr1_2:66755991-66756010 | None:intergenic | 45.0% | |
| !! | ATGGTTGTTGTCGGTGTTGT+GGG | + | chr1_2:66755991-66756010 | Msa0086160:CDS | 45.0% |
| ATGGACTCAGCATTTGAGTG+AGG | + | chr1_2:66756056-66756075 | Msa0086160:CDS | 45.0% | |
| AGCGTAGGTTCTACAAGAAC+TGG | + | chr1_2:66756085-66756104 | Msa0086160:CDS | 45.0% | |
| CTTGCTGAAAGCCTTCTTCT+TGG | - | chr1_2:66756118-66756137 | None:intergenic | 45.0% | |
| TGCAACTGTTATCCGTGTGT+TGG | + | chr1_2:66756209-66756228 | Msa0086160:CDS | 45.0% | |
| AGCATATTCGGCAGTTACCT+GGG | - | chr1_2:66756241-66756260 | None:intergenic | 45.0% | |
| ! | CGCTAATTAGGTGCTATGAG+CGG | + | chr1_2:66756678-66756697 | Msa0086160:intron | 45.0% |
| ATGGAGATTCAAGTGAACGG+TGG | + | chr1_2:66756997-66757016 | Msa0086160:CDS | 45.0% | |
| TGACATCATTGGAGTGACCA+AGG | + | chr1_2:66757107-66757126 | Msa0086160:CDS | 45.0% | |
| GACATCATTGGAGTGACCAA+GGG | + | chr1_2:66757108-66757127 | Msa0086160:CDS | 45.0% | |
| ATTGGAGTGACCAAGGGTAA+AGG | + | chr1_2:66757114-66757133 | Msa0086160:CDS | 45.0% | |
| !! | ATGAAGGTGTTGTTACGCGT+TGG | + | chr1_2:66757139-66757158 | Msa0086160:CDS | 45.0% |
| !! | TGAAGGTGTTGTTACGCGTT+GGG | + | chr1_2:66757140-66757159 | Msa0086160:CDS | 45.0% |
| TCTTCCTCGTAAGACTCACA+GGG | + | chr1_2:66757173-66757192 | Msa0086160:CDS | 45.0% | |
| AGGTTGCATGTATTGGAGCT+TGG | + | chr1_2:66757205-66757224 | Msa0086160:CDS | 45.0% | |
| TGTTCAGCTCAGTTCTGTGA+TGG | - | chr1_2:66757281-66757300 | None:intergenic | 45.0% | |
| TCACCTATCGAACTCAGTCT+GGG | - | chr1_2:66757349-66757368 | None:intergenic | 45.0% | |
| CCCACACTATGGTATTGTCA+AGG | + | chr1_2:66757516-66757535 | Msa0086160:CDS | 45.0% | |
| AAGTCTGCTTAAGAAGGGAC+TGG | - | chr1_2:66757603-66757622 | None:intergenic | 45.0% | |
| GACGAGAAGTCTGCTTAAGA+AGG | - | chr1_2:66757609-66757628 | None:intergenic | 45.0% | |
| ACCTCTTCCAAGTTTGGACA+TGG | + | chr1_2:66757664-66757683 | Msa0086160:CDS | 45.0% | |
| ACCATGTCCAAACTTGGAAG+AGG | - | chr1_2:66757668-66757687 | None:intergenic | 45.0% | |
| GAAACGACCATGTCCAAACT+TGG | - | chr1_2:66757674-66757693 | None:intergenic | 45.0% | |
| ACACTTCACTTGCGTAGCAG+CGG | + | chr1_2:66754742-66754761 | Msa0086160:CDS | 50.0% | |
| AAGTTCGAGCACCCAAGACA+CGG | + | chr1_2:66754899-66754918 | Msa0086160:CDS | 50.0% | |
| CACCCAAGACACGGTTCTTT+GGG | + | chr1_2:66754908-66754927 | Msa0086160:CDS | 50.0% | |
| TGGTGTGACTACTGCAGTGA+AGG | + | chr1_2:66755359-66755378 | Msa0086160:intron | 50.0% | |
| !! | TTAGCTTGGGTGGCTTGGTT+GGG | - | chr1_2:66755401-66755420 | None:intergenic | 50.0% |
| ! | AAGAAGGCAGTTAGCTTGGG+TGG | - | chr1_2:66755411-66755430 | None:intergenic | 50.0% |
| ACCCAAGCTAACTGCCTTCT+TGG | + | chr1_2:66755410-66755429 | Msa0086160:CDS | 50.0% | |
| ! | CCCAAGAAGGCAGTTAGCTT+GGG | - | chr1_2:66755414-66755433 | None:intergenic | 50.0% |
| CCCAAGCTAACTGCCTTCTT+GGG | + | chr1_2:66755411-66755430 | Msa0086160:CDS | 50.0% | |
| ACCCAAGAAGGCAGTTAGCT+TGG | - | chr1_2:66755415-66755434 | None:intergenic | 50.0% | |
| ! | ACCAGCCTTGTAACCCAAGA+AGG | - | chr1_2:66755427-66755446 | None:intergenic | 50.0% |
| AGGGGTCTCGATGATTGTCA+CGG | - | chr1_2:66755968-66755987 | None:intergenic | 50.0% | |
| CACAACACCGACAACAACCA+TGG | - | chr1_2:66755992-66756011 | None:intergenic | 50.0% | |
| !! | CATGGTTGTTGTCGGTGTTG+TGG | + | chr1_2:66755990-66756009 | Msa0086160:CDS | 50.0% |
| GGTTATGTGAAAACTCCCCG+TGG | + | chr1_2:66756012-66756031 | Msa0086160:CDS | 50.0% | |
| CTGGTGCAAGTCCAAGAAGA+AGG | + | chr1_2:66756104-66756123 | Msa0086160:CDS | 50.0% | |
| TCAGTTTCTCAAGCTGGGTC+TGG | - | chr1_2:66756182-66756201 | None:intergenic | 50.0% | |
| CAGCATATTCGGCAGTTACC+TGG | - | chr1_2:66756242-66756261 | None:intergenic | 50.0% | |
| TCTGTGCAAACGCAGCACTT+AGG | + | chr1_2:66756406-66756425 | Msa0086160:intron | 50.0% | |
| ! | CAGCACTTAGGTGCTATGAG+CGG | + | chr1_2:66756418-66756437 | Msa0086160:intron | 50.0% |
| GTGCAAACGCAGCGCTAATT+AGG | + | chr1_2:66756666-66756685 | Msa0086160:intron | 50.0% | |
| AAAGTCCACCTTCTGAGCGA+TGG | - | chr1_2:66757025-66757044 | None:intergenic | 50.0% | |
| !! | GAAGGTGTTGTTACGCGTTG+GGG | + | chr1_2:66757141-66757160 | Msa0086160:CDS | 50.0% |
| GTCTTCCTCGTAAGACTCAC+AGG | + | chr1_2:66757172-66757191 | Msa0086160:CDS | 50.0% | |
| CTTCCTCGTAAGACTCACAG+GGG | + | chr1_2:66757174-66757193 | Msa0086160:CDS | 50.0% | |
| AAACCCCTGTGAGTCTTACG+AGG | - | chr1_2:66757180-66757199 | None:intergenic | 50.0% | |
| GTAAGACTCACAGGGGTTTG+AGG | + | chr1_2:66757181-66757200 | Msa0086160:CDS | 50.0% | |
| TCTTTCACTGTTGCCAGAGC+TGG | + | chr1_2:66757243-66757262 | Msa0086160:CDS | 50.0% | |
| CTCACCTATCGAACTCAGTC+TGG | - | chr1_2:66757350-66757369 | None:intergenic | 50.0% | |
| TAGTGTGGGAAACCACCCAT+AGG | - | chr1_2:66757505-66757524 | None:intergenic | 50.0% | |
| ATGGGTGGTTTCCCACACTA+TGG | + | chr1_2:66757505-66757524 | Msa0086160:CDS | 50.0% | |
| ATGATCAAGGGAGGCTGTGT+TGG | + | chr1_2:66757550-66757569 | Msa0086160:CDS | 50.0% | |
| ! | CTGTGTTGGTCCCAAGAAGA+GGG | + | chr1_2:66757564-66757583 | Msa0086160:CDS | 50.0% |
| GACTTCTCGTCTTGCTCTTG+AGG | + | chr1_2:66757618-66757637 | Msa0086160:CDS | 50.0% | |
| GCACCCAAGACACGGTTCTT+TGG | + | chr1_2:66754907-66754926 | Msa0086160:CDS | 55.0% | |
| GACGAGCAGCACGCTTTCTT+GGG | - | chr1_2:66754940-66754959 | None:intergenic | 55.0% | |
| TGACGAGCAGCACGCTTTCT+TGG | - | chr1_2:66754941-66754960 | None:intergenic | 55.0% | |
| GCTGCTCGTCACAGAGGAAA+AGG | + | chr1_2:66754950-66754969 | Msa0086160:CDS | 55.0% | |
| TGCAGTGAAGGCTTTCCCCA+AGG | + | chr1_2:66755371-66755390 | Msa0086160:intron | 55.0% | |
| GCTTGGTTGGGTCATCCTTG+GGG | - | chr1_2:66755389-66755408 | None:intergenic | 55.0% | |
| ! | GGCTTGGTTGGGTCATCCTT+GGG | - | chr1_2:66755390-66755409 | None:intergenic | 55.0% |
| !! | TGGCTTGGTTGGGTCATCCT+TGG | - | chr1_2:66755391-66755410 | None:intergenic | 55.0% |
| !! | GTTAGCTTGGGTGGCTTGGT+TGG | - | chr1_2:66755402-66755421 | None:intergenic | 55.0% |
| GCCTTCTTGGGTTACAAGGC+TGG | + | chr1_2:66755423-66755442 | Msa0086160:CDS | 55.0% | |
| GTCAGAGAAGTCGAGAAGCC+AGG | + | chr1_2:66755459-66755478 | Msa0086160:CDS | 55.0% | |
| GGGGTCTCGATGATTGTCAC+GGG | - | chr1_2:66755967-66755986 | None:intergenic | 55.0% | |
| AATCATCGAGACCCCTCCCA+TGG | + | chr1_2:66755972-66755991 | Msa0086160:CDS | 55.0% | |
| ACCCCTCCCATGGTTGTTGT+CGG | + | chr1_2:66755982-66756001 | Msa0086160:CDS | 55.0% | |
| ACCGACAACAACCATGGGAG+GGG | - | chr1_2:66755986-66756005 | None:intergenic | 55.0% | |
| CACCGACAACAACCATGGGA+GGG | - | chr1_2:66755987-66756006 | None:intergenic | 55.0% | |
| ACACCGACAACAACCATGGG+AGG | - | chr1_2:66755988-66756007 | None:intergenic | 55.0% | |
| TGGTACCATCGCTCAGAAGG+TGG | + | chr1_2:66757017-66757036 | Msa0086160:CDS | 55.0% | |
| GACTCACAGGGGTTTGAGGA+AGG | + | chr1_2:66757185-66757204 | Msa0086160:CDS | 55.0% | |
| GTTGCCAGAGCTGGTCAGAA+CGG | + | chr1_2:66757252-66757271 | Msa0086160:CDS | 55.0% | |
| GTATCCGTTCTGACCAGCTC+TGG | - | chr1_2:66757259-66757278 | None:intergenic | 55.0% | |
| CAAGCTCGGCAAAGTTGGAG+AGG | + | chr1_2:66757311-66757330 | Msa0086160:CDS | 55.0% | |
| GAACTCAGTCTGGGCGTCAT+GGG | - | chr1_2:66757340-66757359 | None:intergenic | 55.0% | |
| ACGCCCAGACTGAGTTCGAT+AGG | + | chr1_2:66757343-66757362 | Msa0086160:CDS | 55.0% | |
| ! | GCTGTGTTGGTCCCAAGAAG+AGG | + | chr1_2:66757563-66757582 | Msa0086160:CDS | 55.0% |
| ! | AAGCGTGCTGCTCGTCACAG+AGG | + | chr1_2:66754944-66754963 | Msa0086160:CDS | 60.0% |
| ! | GGCAGTTAGCTTGGGTGGCT+TGG | - | chr1_2:66755406-66755425 | None:intergenic | 60.0% |
| CCTGGGTGTGAGCCAACACA+CGG | - | chr1_2:66756224-66756243 | None:intergenic | 60.0% | |
| CGGTGGTACCATCGCTCAGA+AGG | + | chr1_2:66757014-66757033 | Msa0086160:CDS | 60.0% | |
| CGAACTCAGTCTGGGCGTCA+TGG | - | chr1_2:66757341-66757360 | None:intergenic | 60.0% | |
| !! | CCGTGTGTTGGCTCACACCC+AGG | + | chr1_2:66756221-66756240 | Msa0086160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 66754731 | 66757992 | 66754731 | ID=Msa0086160;Name=Msa0086160 |
| chr1_2 | mRNA | 66754731 | 66757992 | 66754731 | ID=Msa0086160-mRNA-1;Parent=Msa0086160;Name=Msa0086160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|0.8|0.83|6|251|412 |
| chr1_2 | exon | 66754731 | 66754788 | 66754731 | ID=Msa0086160-mRNA-1:exon:22503;Parent=Msa0086160-mRNA-1 |
| chr1_2 | exon | 66754876 | 66754971 | 66754876 | ID=Msa0086160-mRNA-1:exon:22504;Parent=Msa0086160-mRNA-1 |
| chr1_2 | exon | 66755376 | 66755486 | 66755376 | ID=Msa0086160-mRNA-1:exon:22505;Parent=Msa0086160-mRNA-1 |
| chr1_2 | exon | 66755938 | 66756242 | 66755938 | ID=Msa0086160-mRNA-1:exon:22506;Parent=Msa0086160-mRNA-1 |
| chr1_2 | exon | 66756955 | 66757364 | 66756955 | ID=Msa0086160-mRNA-1:exon:22507;Parent=Msa0086160-mRNA-1 |
| chr1_2 | exon | 66757483 | 66757992 | 66757483 | ID=Msa0086160-mRNA-1:exon:22508;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66754731 | 66754788 | 66754731 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66754876 | 66754971 | 66754876 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66755376 | 66755486 | 66755376 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66755938 | 66756242 | 66755938 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66756955 | 66757364 | 66756955 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | CDS | 66757483 | 66757741 | 66757483 | ID=Msa0086160-mRNA-1:cds;Parent=Msa0086160-mRNA-1 |
| chr1_2 | three_prime_UTR | 66757742 | 66757992 | 66757742 | ID=Msa0086160-mRNA-1:three_prime_utr;Parent=Msa0086160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
