Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012500 | sp|P33324|YKJ1_YEAST | 29.333 | 225 | 134 | 7 | 30 | 232 | 51 | 272 | 7.25e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012500 | Msa0115070 | 0.812117 | 4.982257e-51 | -8.615850e-47 |
| Msa0012500 | Msa1315870 | 0.800874 | 1.174451e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012500 | MtrunA17_Chr1g0161441 | 96.400 | 250 | 7 | 2 | 1 | 249 | 1 | 249 | 1.43e-178 | 490 |
| Msa0012500 | MtrunA17_Chr8g0385691 | 42.194 | 237 | 132 | 2 | 2 | 237 | 19 | 251 | 2.37e-61 | 193 |
| Msa0012500 | MtrunA17_Chr8g0385681 | 40.171 | 234 | 135 | 2 | 6 | 238 | 26 | 255 | 1.32e-58 | 186 |
| Msa0012500 | MtrunA17_Chr3g0131581 | 39.914 | 233 | 132 | 3 | 9 | 237 | 43 | 271 | 5.29e-58 | 185 |
| Msa0012500 | MtrunA17_Chr3g0141821 | 29.954 | 217 | 134 | 7 | 33 | 233 | 94 | 308 | 1.22e-17 | 81.6 |
| Msa0012500 | MtrunA17_Chr1g0155521 | 30.415 | 217 | 133 | 7 | 33 | 233 | 113 | 327 | 1.65e-17 | 81.6 |
| Msa0012500 | MtrunA17_Chr1g0155071 | 30.233 | 215 | 140 | 6 | 22 | 232 | 35 | 243 | 1.91e-16 | 77.0 |
| Msa0012500 | MtrunA17_Chr2g0290661 | 26.923 | 208 | 126 | 7 | 14 | 204 | 23 | 221 | 9.24e-16 | 75.5 |
| Msa0012500 | MtrunA17_Chr4g0058811 | 27.174 | 184 | 126 | 5 | 13 | 193 | 53 | 231 | 2.18e-15 | 73.6 |
| Msa0012500 | MtrunA17_Chr3g0144911 | 30.455 | 220 | 134 | 8 | 26 | 228 | 103 | 320 | 3.48e-15 | 74.3 |
| Msa0012500 | MtrunA17_Chr7g0254621 | 27.094 | 203 | 141 | 3 | 29 | 229 | 43 | 240 | 4.46e-15 | 73.6 |
| Msa0012500 | MtrunA17_Chr4g0058791 | 24.615 | 195 | 139 | 5 | 13 | 204 | 51 | 240 | 1.32e-14 | 71.2 |
| Msa0012500 | MtrunA17_Chr8g0373391 | 27.155 | 232 | 158 | 7 | 6 | 232 | 18 | 243 | 1.74e-14 | 71.2 |
| Msa0012500 | MtrunA17_Chr3g0144891 | 29.358 | 218 | 135 | 8 | 28 | 228 | 92 | 307 | 2.56e-13 | 68.9 |
| Msa0012500 | MtrunA17_Chr5g0425421 | 28.000 | 175 | 117 | 5 | 29 | 201 | 45 | 212 | 2.81e-12 | 65.5 |
| Msa0012500 | MtrunA17_Chr3g0115591 | 25.446 | 224 | 157 | 7 | 9 | 228 | 27 | 244 | 2.35e-11 | 62.8 |
| Msa0012500 | MtrunA17_Chr4g0004981 | 25.877 | 228 | 150 | 7 | 29 | 242 | 122 | 344 | 4.71e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012500 | AT1G14820.3 | 68.696 | 230 | 71 | 1 | 10 | 238 | 8 | 237 | 7.40e-115 | 329 |
| Msa0012500 | AT1G14820.2 | 68.203 | 217 | 68 | 1 | 23 | 238 | 8 | 224 | 3.39e-107 | 310 |
| Msa0012500 | AT1G14820.1 | 68.203 | 217 | 68 | 1 | 23 | 238 | 8 | 224 | 3.39e-107 | 310 |
| Msa0012500 | AT1G01630.1 | 38.140 | 215 | 128 | 2 | 25 | 238 | 45 | 255 | 3.24e-52 | 170 |
| Msa0012500 | AT1G75170.2 | 29.787 | 235 | 154 | 7 | 3 | 232 | 16 | 244 | 2.47e-17 | 79.7 |
| Msa0012500 | AT1G75170.1 | 29.787 | 235 | 154 | 7 | 3 | 232 | 16 | 244 | 2.47e-17 | 79.7 |
| Msa0012500 | AT4G08690.2 | 29.834 | 181 | 120 | 3 | 29 | 208 | 42 | 216 | 2.52e-16 | 77.0 |
| Msa0012500 | AT4G08690.1 | 29.834 | 181 | 120 | 3 | 29 | 208 | 42 | 216 | 2.52e-16 | 77.0 |
| Msa0012500 | AT4G08690.3 | 29.834 | 181 | 120 | 3 | 29 | 208 | 42 | 216 | 2.52e-16 | 77.0 |
| Msa0012500 | AT1G55840.1 | 25.962 | 208 | 128 | 7 | 14 | 204 | 23 | 221 | 3.16e-16 | 77.0 |
| Msa0012500 | AT4G36640.1 | 29.204 | 226 | 151 | 5 | 11 | 232 | 21 | 241 | 3.66e-16 | 76.6 |
| Msa0012500 | AT4G36640.3 | 29.204 | 226 | 151 | 5 | 11 | 232 | 21 | 241 | 3.66e-16 | 76.6 |
| Msa0012500 | AT1G55840.2 | 26.020 | 196 | 122 | 6 | 26 | 204 | 5 | 194 | 7.41e-16 | 75.9 |
| Msa0012500 | AT5G47730.4 | 27.184 | 206 | 130 | 6 | 14 | 205 | 23 | 222 | 1.42e-15 | 75.5 |
| Msa0012500 | AT5G47730.1 | 27.184 | 206 | 130 | 6 | 14 | 205 | 23 | 222 | 1.42e-15 | 75.5 |
| Msa0012500 | AT2G18180.1 | 28.972 | 214 | 134 | 7 | 33 | 230 | 82 | 293 | 1.28e-14 | 73.2 |
| Msa0012500 | AT2G18180.2 | 28.972 | 214 | 134 | 7 | 33 | 230 | 82 | 293 | 1.42e-14 | 73.2 |
| Msa0012500 | AT2G18180.3 | 28.837 | 215 | 135 | 7 | 32 | 230 | 10 | 222 | 3.62e-14 | 72.0 |
| Msa0012500 | AT2G18180.4 | 28.837 | 215 | 135 | 7 | 32 | 230 | 10 | 222 | 3.95e-14 | 71.6 |
| Msa0012500 | AT4G36490.1 | 27.962 | 211 | 136 | 6 | 33 | 228 | 79 | 288 | 4.89e-14 | 71.6 |
| Msa0012500 | AT5G63060.2 | 26.267 | 217 | 148 | 7 | 13 | 226 | 19 | 226 | 1.62e-13 | 68.2 |
| Msa0012500 | AT5G63060.1 | 26.267 | 217 | 148 | 7 | 13 | 226 | 54 | 261 | 3.52e-13 | 67.8 |
| Msa0012500 | AT4G39170.1 | 29.245 | 212 | 132 | 8 | 33 | 228 | 109 | 318 | 1.83e-12 | 67.0 |
| Msa0012500 | AT4G39170.2 | 29.245 | 212 | 132 | 8 | 33 | 228 | 109 | 318 | 1.92e-12 | 67.0 |
| Msa0012500 | AT1G22180.2 | 26.230 | 183 | 126 | 4 | 24 | 204 | 40 | 215 | 9.52e-12 | 64.3 |
| Msa0012500 | AT1G22180.4 | 26.230 | 183 | 126 | 4 | 24 | 204 | 40 | 215 | 9.52e-12 | 64.3 |
| Msa0012500 | AT2G16380.2 | 27.358 | 212 | 136 | 7 | 33 | 228 | 89 | 298 | 1.92e-11 | 63.9 |
| Msa0012500 | AT2G16380.1 | 27.358 | 212 | 136 | 7 | 33 | 228 | 89 | 298 | 1.92e-11 | 63.9 |
Find 73 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATCATTTGAGTCTAATT+AGG | 0.139014 | 1_1:+18737259 | Msa0012500:three_prime_UTR |
| ATCATATCTCTAATCATATT+TGG | 0.163443 | 1_1:-18737394 | None:intergenic |
| GCTCTTCCACCATACTCTTC+TGG | 0.189899 | 1_1:-18737151 | None:intergenic |
| AGAATTTATTGTACATTTAC+TGG | 0.207444 | 1_1:+18734226 | Msa0012500:intron |
| TGAAAAGTTGATTGGGGTTC+TGG | 0.231690 | 1_1:+18735001 | Msa0012500:CDS |
| TTTCAACTATAGAGGATATT+AGG | 0.248922 | 1_1:+18737327 | Msa0012500:three_prime_UTR |
| CTGTTGTTGCTTCAGCCATT+AGG | 0.253056 | 1_1:-18730763 | None:intergenic |
| GGGCAGAAGAAAAGAGTATT+TGG | 0.263590 | 1_1:-18730741 | None:intergenic |
| CAATCATTTGAGTCTAATTA+GGG | 0.265488 | 1_1:+18737260 | Msa0012500:three_prime_UTR |
| GAGATTTGTTTCCGGCTTCC+TGG | 0.277458 | 1_1:+18735316 | Msa0012500:CDS |
| TGTTGTTGCTTCAGCCATTA+GGG | 0.288650 | 1_1:-18730762 | None:intergenic |
| ACTTGAATATAGTGTCTTCT+TGG | 0.292765 | 1_1:+18737229 | Msa0012500:exon |
| CTCTTCCACCATACTCTTCT+GGG | 0.295772 | 1_1:-18737150 | None:intergenic |
| TTCTGAAGTTCCTGATGAAT+TGG | 0.300455 | 1_1:+18731278 | Msa0012500:CDS |
| GACGCACGCGGTTTAATTAC+TGG | 0.310396 | 1_1:+18735053 | Msa0012500:CDS |
| TAGCACTTTGCTAAACGTTC+AGG | 0.335995 | 1_1:-18735257 | None:intergenic |
| AGTGTTTGGAGATTTGTTTC+CGG | 0.337909 | 1_1:+18735308 | Msa0012500:CDS |
| AATTACTCTTGAATTGAATC+TGG | 0.348877 | 1_1:-18731389 | None:intergenic |
| GACTTTAAAATAGACAAAAT+AGG | 0.394721 | 1_1:-18737429 | None:intergenic |
| TTTCTAGTTTCCAATTCATC+AGG | 0.401334 | 1_1:-18731288 | None:intergenic |
| GATTGGGGTTCTGGATCTGC+AGG | 0.409166 | 1_1:+18735010 | Msa0012500:CDS |
| TTATAGATCATAAAGGGGTT+AGG | 0.412020 | 1_1:-18737302 | None:intergenic |
| TGTTTGTCCAATGGCAGAAA+TGG | 0.413217 | 1_1:+18731220 | Msa0012500:CDS |
| TGTTACATATTCTATTCTAC+TGG | 0.413810 | 1_1:+18737367 | Msa0012500:three_prime_UTR |
| TAGGAAATGAAAAGTTGATT+GGG | 0.414103 | 1_1:+18734994 | Msa0012500:CDS |
| TTTCTTGTGTTGCCTTGTCC+AGG | 0.415079 | 1_1:-18735334 | None:intergenic |
| GACATTCTCCCAGAAGAGTA+TGG | 0.427276 | 1_1:+18737142 | Msa0012500:CDS |
| AGGTGAATAAGAAGAATAAG+AGG | 0.429626 | 1_1:-18730660 | None:intergenic |
| GGACTAGTATGGTGCCTAAT+GGG | 0.443267 | 1_1:+18731244 | Msa0012500:CDS |
| AGGACTAGTATGGTGCCTAA+TGG | 0.443355 | 1_1:+18731243 | Msa0012500:CDS |
| GCAGAAATGGAGGACTAGTA+TGG | 0.444272 | 1_1:+18731233 | Msa0012500:CDS |
| GTGGTTTCACTTCAACGTCT+TGG | 0.449032 | 1_1:-18737189 | None:intergenic |
| CTTGAATTGAATCTGGTCCT+TGG | 0.455784 | 1_1:-18731382 | None:intergenic |
| GAATCTGAAATGAACCCATT+AGG | 0.458321 | 1_1:-18731258 | None:intergenic |
| CTATAAAATTTCAACTATAG+AGG | 0.462208 | 1_1:+18737319 | Msa0012500:three_prime_UTR |
| AATTGAATCTGGTCCTTGGA+AGG | 0.465657 | 1_1:-18731378 | None:intergenic |
| GAAGTGAAACCACCGGAAAA+CGG | 0.468425 | 1_1:+18737199 | Msa0012500:CDS |
| GTAGGAAATGAAAAGTTGAT+TGG | 0.469041 | 1_1:+18734993 | Msa0012500:CDS |
| TGTTGCCTTGTCCAGGAAGC+CGG | 0.471058 | 1_1:-18735327 | None:intergenic |
| GGACAAGGCAACACAAGAAA+AGG | 0.493431 | 1_1:+18735337 | Msa0012500:CDS |
| TAGTCCTCCATTTCTGCCAT+TGG | 0.499774 | 1_1:-18731227 | None:intergenic |
| AAGGGAAATGTCTACTAGCT+TGG | 0.503703 | 1_1:-18731359 | None:intergenic |
| AGCACTTTGCTAAACGTTCA+GGG | 0.506911 | 1_1:-18735256 | None:intergenic |
| AAACCTTGGTTCTTCTACAC+AGG | 0.507836 | 1_1:+18730823 | Msa0012500:CDS |
| CAACAATTACGTTGACATAA+CGG | 0.510272 | 1_1:-18730600 | None:intergenic |
| TTTCAGTGCTTTCAAGGGAA+GGG | 0.525192 | 1_1:+18734968 | Msa0012500:intron |
| CTAGCTTGGACAATCATCAC+TGG | 0.531895 | 1_1:-18731345 | None:intergenic |
| AAGAAAAGAGTATTTGGCAG+AGG | 0.536815 | 1_1:-18730735 | None:intergenic |
| TAGTAGACATTTCCCTTCCA+AGG | 0.542730 | 1_1:+18731365 | Msa0012500:CDS |
| TGTTTCCGGCTTCCTGGACA+AGG | 0.546088 | 1_1:+18735322 | Msa0012500:CDS |
| ATTGAATCTGGTCCTTGGAA+GGG | 0.551556 | 1_1:-18731377 | None:intergenic |
| TTCACTTCAACGTCTTGGAT+AGG | 0.562986 | 1_1:-18737184 | None:intergenic |
| GCTTTCAAGGGAAGGGAGGT+AGG | 0.565134 | 1_1:+18734975 | Msa0012500:CDS |
| AAGTTGTTCGTAAGTGATGT+TGG | 0.581331 | 1_1:+18737115 | Msa0012500:CDS |
| GTTGTTGCTTCAGCCATTAG+GGG | 0.581995 | 1_1:-18730761 | None:intergenic |
| CAGCAAAGATGTTTGTCCAA+TGG | 0.589632 | 1_1:+18731211 | Msa0012500:CDS |
| AGGAAATGAAAAGTTGATTG+GGG | 0.598659 | 1_1:+18734995 | Msa0012500:CDS |
| TGGGTTTCACTATTTGAGAG+TGG | 0.600747 | 1_1:-18730703 | None:intergenic |
| TTGTCCAATGGCAGAAATGG+AGG | 0.601671 | 1_1:+18731223 | Msa0012500:CDS |
| ATCATTTGAGTCTAATTAGG+GGG | 0.606848 | 1_1:+18737262 | Msa0012500:three_prime_UTR |
| ATTGGGGTTCTGGATCTGCA+GGG | 0.609006 | 1_1:+18735011 | Msa0012500:CDS |
| CAGTGCTTTCAAGGGAAGGG+AGG | 0.627355 | 1_1:+18734971 | Msa0012500:intron |
| AGACGTTGAAGTGAAACCAC+CGG | 0.634647 | 1_1:+18737192 | Msa0012500:CDS |
| TTACCTGTGTAGAAGAACCA+AGG | 0.639876 | 1_1:-18730826 | None:intergenic |
| ATGGGGACCCTACACTGATG+AGG | 0.642360 | 1_1:+18731154 | Msa0012500:CDS |
| TAGCTTGGACAATCATCACT+GGG | 0.657719 | 1_1:-18731344 | None:intergenic |
| TACTGGACAAGACAATTGCG+AGG | 0.666147 | 1_1:+18734243 | Msa0012500:CDS |
| AATCATTTGAGTCTAATTAG+GGG | 0.668712 | 1_1:+18737261 | Msa0012500:three_prime_UTR |
| CAAGAACATGTGTTGAAGAG+AGG | 0.675450 | 1_1:-18730680 | None:intergenic |
| GATTGTAATTATAAGCAATG+AGG | 0.676360 | 1_1:+18737084 | Msa0012500:intron |
| ATTCTCCCAGAAGAGTATGG+TGG | 0.682560 | 1_1:+18737145 | Msa0012500:CDS |
| AAGAGGTACAAGAAAGCACG+TGG | 0.708208 | 1_1:-18730643 | None:intergenic |
| AGGTACAAGAAAGCACGTGG+AGG | 0.747331 | 1_1:-18730640 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATATAAAAAAAAATA+TGG | - | chr1_1:18731117-18731136 | None:intergenic | 0.0% |
| !!! | ATATTTGAACTTTTTAATTT+AGG | + | chr1_1:18734464-18734483 | Msa0012500:intron | 10.0% |
| !! | AAAATCATATTATAATCAAA+TGG | - | chr1_1:18736313-18736332 | None:intergenic | 10.0% |
| !!! | TTGAAACTTTTAAAATATAA+GGG | + | chr1_1:18736699-18736718 | Msa0012500:intron | 10.0% |
| !! | TAAAAACTAAAATAAACATA+AGG | + | chr1_1:18736729-18736748 | Msa0012500:intron | 10.0% |
| !! | AAAAACTAAAATAAACATAA+GGG | + | chr1_1:18736730-18736749 | Msa0012500:intron | 10.0% |
| !!! | AAAAATAAACACAAAGTATT+GGG | - | chr1_1:18731439-18731458 | None:intergenic | 15.0% |
| !! | ATTTAATTAGTATATACTGT+CGG | + | chr1_1:18731464-18731483 | Msa0012500:intron | 15.0% |
| !!! | TAATTTGATAATGTCAAAAT+TGG | - | chr1_1:18732127-18732146 | None:intergenic | 15.0% |
| !!! | TTTTAATGTTTGATATAATG+AGG | + | chr1_1:18732782-18732801 | Msa0012500:intron | 15.0% |
| !!! | TATCTAAAAAATTGGATTTT+GGG | - | chr1_1:18733449-18733468 | None:intergenic | 15.0% |
| !!! | TTATCTAAAAAATTGGATTT+TGG | - | chr1_1:18733450-18733469 | None:intergenic | 15.0% |
| !! | AACAAATAATAGAAAACAAA+TGG | - | chr1_1:18733948-18733967 | None:intergenic | 15.0% |
| !! | AAAACAAGTTATGAAATAAT+TGG | - | chr1_1:18735197-18735216 | None:intergenic | 15.0% |
| !!! | TAAGGTTTTTTTGAATATAT+AGG | + | chr1_1:18735971-18735990 | Msa0012500:intron | 15.0% |
| !! | TTGATACTTTACTTTATATT+AGG | - | chr1_1:18736098-18736117 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_1:18736378-18736397 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_1:18736379-18736398 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | - | chr1_1:18736409-18736428 | None:intergenic | 15.0% |
| !!! | ATATTTTAAAAGTTTCAAGT+TGG | - | chr1_1:18736697-18736716 | None:intergenic | 15.0% |
| !!! | CTTGAAACTTTTAAAATATA+AGG | + | chr1_1:18736698-18736717 | Msa0012500:intron | 15.0% |
| !!! | GTTTATTTTAGTTTTTAAGT+TGG | - | chr1_1:18736726-18736745 | None:intergenic | 15.0% |
| !! | TCATTTGAATAAAAAAACTA+AGG | - | chr1_1:18736774-18736793 | None:intergenic | 15.0% |
| !!! | AAATTTTATAGATCATAAAG+GGG | - | chr1_1:18737310-18737329 | None:intergenic | 15.0% |
| !!! | GAAATTTTATAGATCATAAA+GGG | - | chr1_1:18737311-18737330 | None:intergenic | 15.0% |
| !!! | TGAAATTTTATAGATCATAA+AGG | - | chr1_1:18737312-18737331 | None:intergenic | 15.0% |
| !! | TAATTCACTAACTTAGTTTA+TGG | + | chr1_1:18730879-18730898 | Msa0012500:intron | 20.0% |
| !!! | ATATTAAATTTCCTTTTTGC+AGG | + | chr1_1:18731128-18731147 | Msa0012500:intron | 20.0% |
| !!! | TATTAAATTTCCTTTTTGCA+GGG | + | chr1_1:18731129-18731148 | Msa0012500:intron | 20.0% |
| !! | GAAAAATAAACACAAAGTAT+TGG | - | chr1_1:18731440-18731459 | None:intergenic | 20.0% |
| !!! | GATATTTGTGGATATATTTT+AGG | + | chr1_1:18731514-18731533 | Msa0012500:intron | 20.0% |
| !! | ATATACCAAAGTGTAATTAT+AGG | + | chr1_1:18731542-18731561 | Msa0012500:intron | 20.0% |
| !! | TATACCAAAGTGTAATTATA+GGG | + | chr1_1:18731543-18731562 | Msa0012500:intron | 20.0% |
| !! | TATATAAAGTAAAACTTCCA+TGG | + | chr1_1:18731638-18731657 | Msa0012500:intron | 20.0% |
| !!! | ATTTAATTTATGTAACCAGT+TGG | + | chr1_1:18731789-18731808 | Msa0012500:intron | 20.0% |
| !!! | TAACTTTAAAGTATTATAGC+TGG | + | chr1_1:18732342-18732361 | Msa0012500:intron | 20.0% |
| !! | AACCATGAATATGAAATTAT+TGG | - | chr1_1:18732374-18732393 | None:intergenic | 20.0% |
| !! | AACAACCATTCTTAAAATTT+AGG | - | chr1_1:18732631-18732650 | None:intergenic | 20.0% |
| !!! | ATTTTAAGAATGGTTGTTTA+AGG | + | chr1_1:18732633-18732652 | Msa0012500:intron | 20.0% |
| !!! | TTTTAAGAATGGTTGTTTAA+GGG | + | chr1_1:18732634-18732653 | Msa0012500:intron | 20.0% |
| !!! | TTTCTAGTTTTTTATTTTCG+GGG | - | chr1_1:18732747-18732766 | None:intergenic | 20.0% |
| !!! | CTTTCTAGTTTTTTATTTTC+GGG | - | chr1_1:18732748-18732767 | None:intergenic | 20.0% |
| !!! | CCTTTCTAGTTTTTTATTTT+CGG | - | chr1_1:18732749-18732768 | None:intergenic | 20.0% |
| !! | ATAAACTCTACTATAGTATT+AGG | + | chr1_1:18733059-18733078 | Msa0012500:intron | 20.0% |
| !! | CAACTTTGTAAGAATAATTT+GGG | - | chr1_1:18733098-18733117 | None:intergenic | 20.0% |
| !!! | AAATTGGTAAATTTGTTAGT+TGG | + | chr1_1:18733230-18733249 | Msa0012500:intron | 20.0% |
| !! | TTGGTCACATAAATTTAAAT+TGG | - | chr1_1:18733356-18733375 | None:intergenic | 20.0% |
| !!! | ATCTAAAAAATTGGATTTTG+GGG | - | chr1_1:18733448-18733467 | None:intergenic | 20.0% |
| !! | AAGTGACTTATCTAAAAAAT+TGG | - | chr1_1:18733457-18733476 | None:intergenic | 20.0% |
| !!! | AGTTGTTTAGTTCAATTTTT+TGG | + | chr1_1:18733566-18733585 | Msa0012500:intron | 20.0% |
| !!! | TTTAGTTCAATTTTTTGGAA+GGG | + | chr1_1:18733571-18733590 | Msa0012500:intron | 20.0% |
| !! | ATCATAATATTGTATCAAAG+GGG | - | chr1_1:18733712-18733731 | None:intergenic | 20.0% |
| !! | GATCATAATATTGTATCAAA+GGG | - | chr1_1:18733713-18733732 | None:intergenic | 20.0% |
| !! | TGATCATAATATTGTATCAA+AGG | - | chr1_1:18733714-18733733 | None:intergenic | 20.0% |
| !! | AAATTAGATCATGTCAAAAT+AGG | - | chr1_1:18733752-18733771 | None:intergenic | 20.0% |
| !!! | ATCTTTTGCTTTCAAATTTA+CGG | + | chr1_1:18733968-18733987 | Msa0012500:intron | 20.0% |
| !! | AGAATTTATTGTACATTTAC+TGG | + | chr1_1:18734226-18734245 | Msa0012500:intron | 20.0% |
| !! | CTTTAAACAATAGATAAGAT+AGG | - | chr1_1:18734302-18734321 | None:intergenic | 20.0% |
| !! | CTATCTTATCTATTGTTTAA+AGG | + | chr1_1:18734300-18734319 | Msa0012500:intron | 20.0% |
| !! | GACATAAAATATACTTCTTA+TGG | + | chr1_1:18734441-18734460 | Msa0012500:intron | 20.0% |
| !!! | CTTTTTAATTTAGGATAATG+AGG | + | chr1_1:18734473-18734492 | Msa0012500:intron | 20.0% |
| !! | TATAAGCTTGTATAATTGTT+TGG | - | chr1_1:18734601-18734620 | None:intergenic | 20.0% |
| !! | GAAGAAATTGTTAGTAATAA+TGG | + | chr1_1:18734853-18734872 | Msa0012500:intron | 20.0% |
| !! | TCGAATAATGATATTAACTA+AGG | - | chr1_1:18735634-18735653 | None:intergenic | 20.0% |
| !!! | TTTACTTTTTATGTCAAACA+TGG | + | chr1_1:18735706-18735725 | Msa0012500:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_1:18736382-18736401 | Msa0012500:intron | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | - | chr1_1:18736410-18736429 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr1_1:18736411-18736430 | Msa0012500:intron | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | - | chr1_1:18736670-18736689 | None:intergenic | 20.0% |
| !!! | CTGATTTTCTAAATAAGTTA+AGG | - | chr1_1:18736552-18736571 | None:intergenic | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | + | chr1_1:18736670-18736689 | Msa0012500:intron | 20.0% |
| !!! | TACTTTGAAAGTAACATATA+CGG | + | chr1_1:18736946-18736965 | Msa0012500:intron | 20.0% |
| !! | CTATAAAATTTCAACTATAG+AGG | + | chr1_1:18737319-18737338 | Msa0012500:three_prime_UTR | 20.0% |
| !! | ATCATATCTCTAATCATATT+TGG | - | chr1_1:18737397-18737416 | None:intergenic | 20.0% |
| !!! | GACTTTAAAATAGACAAAAT+AGG | - | chr1_1:18737432-18737451 | None:intergenic | 20.0% |
| ! | AATTACTCTTGAATTGAATC+TGG | - | chr1_1:18731392-18731411 | None:intergenic | 25.0% |
| ! | TCTTAGTATAGAGATATTTG+TGG | + | chr1_1:18731502-18731521 | Msa0012500:intron | 25.0% |
| ! | TTGGACAAAATACATCAATT+TGG | - | chr1_1:18731728-18731747 | None:intergenic | 25.0% |
| ! | AGGTACAGTTTAATTAATTG+AGG | + | chr1_1:18731866-18731885 | Msa0012500:intron | 25.0% |
| ! | TCTAAACAATTTGGTTATTG+AGG | - | chr1_1:18731917-18731936 | None:intergenic | 25.0% |
| ! | AGTGACTTATCTAAACAATT+TGG | - | chr1_1:18731926-18731945 | None:intergenic | 25.0% |
| ! | TTTAGATAAGTCACTTATCA+AGG | + | chr1_1:18731931-18731950 | Msa0012500:intron | 25.0% |
| ! | AATTAAATAGAATGAAGTGC+TGG | + | chr1_1:18732153-18732172 | Msa0012500:intron | 25.0% |
| !! | ATTAAATAGAATGAAGTGCT+GGG | + | chr1_1:18732154-18732173 | Msa0012500:intron | 25.0% |
| !! | CCATATCATTTGAAAGTATA+GGG | - | chr1_1:18732286-18732305 | None:intergenic | 25.0% |
| !! | ACCATATCATTTGAAAGTAT+AGG | - | chr1_1:18732287-18732306 | None:intergenic | 25.0% |
| ! | CTCCAATAATTTCATATTCA+TGG | + | chr1_1:18732369-18732388 | Msa0012500:intron | 25.0% |
| ! | GCAACTTCTATATGAAATAT+TGG | + | chr1_1:18732459-18732478 | Msa0012500:intron | 25.0% |
| ! | CTGAAAATGTGTTTATAAGT+GGG | + | chr1_1:18732556-18732575 | Msa0012500:intron | 25.0% |
| !! | CCATTCTTAAAATTTAGGTT+AGG | - | chr1_1:18732626-18732645 | None:intergenic | 25.0% |
| !!! | CCTAACCTAAATTTTAAGAA+TGG | + | chr1_1:18732623-18732642 | Msa0012500:intron | 25.0% |
| ! | GAACTGATAAAATGTACAAA+CGG | - | chr1_1:18732698-18732717 | None:intergenic | 25.0% |
| ! | CCGAAAATAAAAAACTAGAA+AGG | + | chr1_1:18732746-18732765 | Msa0012500:intron | 25.0% |
| !! | GATTCTGGTTAATAATTTGA+AGG | + | chr1_1:18732816-18732835 | Msa0012500:intron | 25.0% |
| !!! | TAATGACTTCAACTAGTTTT+TGG | - | chr1_1:18732859-18732878 | None:intergenic | 25.0% |
| ! | AAACTAGTTGAAGTCATTAA+TGG | + | chr1_1:18732860-18732879 | Msa0012500:intron | 25.0% |
| ! | AACTAGTTGAAGTCATTAAT+GGG | + | chr1_1:18732861-18732880 | Msa0012500:intron | 25.0% |
| ! | CCAACTTTGTAAGAATAATT+TGG | - | chr1_1:18733099-18733118 | None:intergenic | 25.0% |
| ! | CCAAATTATTCTTACAAAGT+TGG | + | chr1_1:18733096-18733115 | Msa0012500:intron | 25.0% |
| ! | CCTGAAAATATGTTTAAAAG+TGG | - | chr1_1:18733146-18733165 | None:intergenic | 25.0% |
| !!! | CCACTTTTAAACATATTTTC+AGG | + | chr1_1:18733143-18733162 | Msa0012500:intron | 25.0% |
| !!! | TTTGATGTATTTTTTCCAAG+CGG | + | chr1_1:18733296-18733315 | Msa0012500:intron | 25.0% |
| ! | CTACAATAATATTTGCCTAA+TGG | - | chr1_1:18733325-18733344 | None:intergenic | 25.0% |
| !!! | GTTTAGTTCAATTTTTTGGA+AGG | + | chr1_1:18733570-18733589 | Msa0012500:intron | 25.0% |
| ! | ATGTTGTTATATGAGAAGTT+AGG | + | chr1_1:18733783-18733802 | Msa0012500:intron | 25.0% |
| ! | AGGAAAATGAAACTATCAAA+TGG | + | chr1_1:18733803-18733822 | Msa0012500:intron | 25.0% |
| ! | GAGATAACTAAACAATCTTT+AGG | - | chr1_1:18733907-18733926 | None:intergenic | 25.0% |
| ! | CATATATTCAGAAGATAATC+TGG | + | chr1_1:18734022-18734041 | Msa0012500:intron | 25.0% |
| ! | AAAATTGAAATTCTCTGTCT+TGG | + | chr1_1:18734125-18734144 | Msa0012500:intron | 25.0% |
| ! | ATCTATTGTTTAAAGGAACT+TGG | + | chr1_1:18734307-18734326 | Msa0012500:intron | 25.0% |
| ! | TCTATTGTTTAAAGGAACTT+GGG | + | chr1_1:18734308-18734327 | Msa0012500:intron | 25.0% |
| ! | ACACTTCAAATTCAATCAAA+TGG | - | chr1_1:18734389-18734408 | None:intergenic | 25.0% |
| !! | TTGATTGAATTTGAAGTGTT+TGG | + | chr1_1:18734390-18734409 | Msa0012500:intron | 25.0% |
| ! | TTACGTACTGTTATATTTCA+TGG | + | chr1_1:18734706-18734725 | Msa0012500:intron | 25.0% |
| ! | TACGTACTGTTATATTTCAT+GGG | + | chr1_1:18734707-18734726 | Msa0012500:intron | 25.0% |
| !! | TAGGAAATGAAAAGTTGATT+GGG | + | chr1_1:18734994-18735013 | Msa0012500:CDS | 25.0% |
| !! | TACTGGATTTCAATTTTTAC+AGG | + | chr1_1:18735070-18735089 | Msa0012500:CDS | 25.0% |
| ! | ACAAGTTATGAAATAATTGG+TGG | - | chr1_1:18735194-18735213 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTGATAAA+CGG | - | chr1_1:18735455-18735474 | None:intergenic | 25.0% |
| ! | AAATGTGATGCAGAATATAT+TGG | + | chr1_1:18735565-18735584 | Msa0012500:intron | 25.0% |
| ! | AATGTGATGCAGAATATATT+GGG | + | chr1_1:18735566-18735585 | Msa0012500:intron | 25.0% |
| ! | TTCAATCTGTTAATTTCCAT+AGG | + | chr1_1:18735602-18735621 | Msa0012500:intron | 25.0% |
| ! | TTCGATAGTATACAGTAATA+TGG | + | chr1_1:18735649-18735668 | Msa0012500:intron | 25.0% |
| !!! | AAGCTATTGCAATTAGTTTT+TGG | + | chr1_1:18736334-18736353 | Msa0012500:intron | 25.0% |
| !!! | CTTGAAACTTTTAAAACGTA+AGG | - | chr1_1:18736669-18736688 | None:intergenic | 25.0% |
| !!! | ACGTTTTAAAAGTTTCAAGT+TGG | + | chr1_1:18736440-18736459 | Msa0012500:intron | 25.0% |
| ! | AATCTTTAAACGTTAAGTGA+CGG | - | chr1_1:18736504-18736523 | None:intergenic | 25.0% |
| ! | TCACTTAACGTTTAAAGATT+TGG | + | chr1_1:18736504-18736523 | Msa0012500:intron | 25.0% |
| ! | CACTTAACGTTTAAAGATTT+GGG | + | chr1_1:18736505-18736524 | Msa0012500:intron | 25.0% |
| !!! | ACGTTTTAAAAGTTTCAAGT+TGG | - | chr1_1:18736440-18736459 | None:intergenic | 25.0% |
| !!! | CTTGAAACTTTTAAAACGTA+AGG | + | chr1_1:18736669-18736688 | Msa0012500:intron | 25.0% |
| !!! | CTATGTAAAACTTGCTATAT+TGG | + | chr1_1:18736987-18737006 | Msa0012500:intron | 25.0% |
| ! | GATTGTAATTATAAGCAATG+AGG | + | chr1_1:18737084-18737103 | Msa0012500:intron | 25.0% |
| ! | ACAATCATTTGAGTCTAATT+AGG | + | chr1_1:18737259-18737278 | Msa0012500:three_prime_UTR | 25.0% |
| ! | CAATCATTTGAGTCTAATTA+GGG | + | chr1_1:18737260-18737279 | Msa0012500:three_prime_UTR | 25.0% |
| ! | AATCATTTGAGTCTAATTAG+GGG | + | chr1_1:18737261-18737280 | Msa0012500:three_prime_UTR | 25.0% |
| ! | TTTCAACTATAGAGGATATT+AGG | + | chr1_1:18737327-18737346 | Msa0012500:three_prime_UTR | 25.0% |
| ! | TGTTACATATTCTATTCTAC+TGG | + | chr1_1:18737367-18737386 | Msa0012500:three_prime_UTR | 25.0% |
| CAACAATTACGTTGACATAA+CGG | - | chr1_1:18730603-18730622 | None:intergenic | 30.0% | |
| AGGTGAATAAGAAGAATAAG+AGG | - | chr1_1:18730663-18730682 | None:intergenic | 30.0% | |
| AAAAAGTCTGTTGAAAACCT+TGG | + | chr1_1:18730809-18730828 | Msa0012500:CDS | 30.0% | |
| ATTCACTACTATTGACAAGA+CGG | + | chr1_1:18731017-18731036 | Msa0012500:intron | 30.0% | |
| TGATATGACGACTTAAATCA+TGG | + | chr1_1:18731089-18731108 | Msa0012500:intron | 30.0% | |
| !! | TTTCTAGTTTCCAATTCATC+AGG | - | chr1_1:18731291-18731310 | None:intergenic | 30.0% |
| ! | AACTAGAAAGATCTTTTTGC+AGG | + | chr1_1:18731302-18731321 | Msa0012500:CDS | 30.0% |
| ! | ACTAGAAAGATCTTTTTGCA+GGG | + | chr1_1:18731303-18731322 | Msa0012500:CDS | 30.0% |
| AATATCTCTATACTAAGACG+TGG | - | chr1_1:18731500-18731519 | None:intergenic | 30.0% | |
| ATGACCCTATAATTACACTT+TGG | - | chr1_1:18731550-18731569 | None:intergenic | 30.0% | |
| ! | ATTGATGTATTTTGTCCAAG+TGG | + | chr1_1:18731729-18731748 | Msa0012500:intron | 30.0% |
| ! | TTGATGTATTTTGTCCAAGT+GGG | + | chr1_1:18731730-18731749 | Msa0012500:intron | 30.0% |
| ! | CTAGACTAATCTTTTCCTAA+TGG | - | chr1_1:18731758-18731777 | None:intergenic | 30.0% |
| ATGTTCTTCTACATTGTGTT+TGG | + | chr1_1:18731963-18731982 | Msa0012500:intron | 30.0% | |
| !!! | GAAATTGAGTTGATTTTCTC+AGG | - | chr1_1:18732061-18732080 | None:intergenic | 30.0% |
| ! | ATACTTGCACTAGAATTTTG+TGG | + | chr1_1:18732186-18732205 | Msa0012500:intron | 30.0% |
| GACAAATACTAGAAGACAAA+TGG | - | chr1_1:18732262-18732281 | None:intergenic | 30.0% | |
| CCCTATACTTTCAAATGATA+TGG | + | chr1_1:18732283-18732302 | Msa0012500:intron | 30.0% | |
| !!! | TGCTCTAGTTCTTTTCAATT+AGG | + | chr1_1:18732412-18732431 | Msa0012500:intron | 30.0% |
| ! | CCACTTATAAACACATTTTC+AGG | - | chr1_1:18732558-18732577 | None:intergenic | 30.0% |
| CCTGAAAATGTGTTTATAAG+TGG | + | chr1_1:18732555-18732574 | Msa0012500:intron | 30.0% | |
| !!! | TAGTTTTTTATTTTCGGGGT+AGG | - | chr1_1:18732743-18732762 | None:intergenic | 30.0% |
| TTTCAAGCACATTCTATGAT+CGG | + | chr1_1:18732981-18733000 | Msa0012500:intron | 30.0% | |
| AGAGTCTATTAGACTTACTT+GGG | - | chr1_1:18733022-18733041 | None:intergenic | 30.0% | |
| AGAGTTTATCAATCATCTGT+TGG | - | chr1_1:18733048-18733067 | None:intergenic | 30.0% | |
| AGGTCATATCTTATTCAATG+TGG | + | chr1_1:18733163-18733182 | Msa0012500:intron | 30.0% | |
| !!! | TTGATGTATTTTTTCCAAGC+GGG | + | chr1_1:18733297-18733316 | Msa0012500:intron | 30.0% |
| GCAAATATTATTGTAGAGAC+TGG | + | chr1_1:18733329-18733348 | Msa0012500:intron | 30.0% | |
| !! | TGTCTTTTTCTTTTGCTATC+TGG | + | chr1_1:18733401-18733420 | Msa0012500:intron | 30.0% |
| TATCAAATGGAATGAAGTGT+TGG | + | chr1_1:18733816-18733835 | Msa0012500:intron | 30.0% | |
| ! | ATCAAATGGAATGAAGTGTT+GGG | + | chr1_1:18733817-18733836 | Msa0012500:intron | 30.0% |
| AAAATTCCAATGCAAGTATC+TGG | - | chr1_1:18733848-18733867 | None:intergenic | 30.0% | |
| ! | ATACTTGCATTGGAATTTTG+TGG | + | chr1_1:18733849-18733868 | Msa0012500:intron | 30.0% |
| CTCTCTTTCATTTGATTGAT+AGG | - | chr1_1:18734075-18734094 | None:intergenic | 30.0% | |
| CTTGTGTGGTAAAAAAATAG+CGG | + | chr1_1:18734332-18734351 | Msa0012500:intron | 30.0% | |
| ! | GAAGTGTTTGGTAAAATTAG+CGG | + | chr1_1:18734402-18734421 | Msa0012500:intron | 30.0% |
| TCCTCTATAAACTACAGATT+TGG | + | chr1_1:18734633-18734652 | Msa0012500:intron | 30.0% | |
| ! | ATTGCAATGCTTTTGTTGAA+TGG | - | chr1_1:18734678-18734697 | None:intergenic | 30.0% |
| CAAAAATGAATGCATAGGAA+GGG | - | chr1_1:18734753-18734772 | None:intergenic | 30.0% | |
| TCAAAAATGAATGCATAGGA+AGG | - | chr1_1:18734754-18734773 | None:intergenic | 30.0% | |
| TCTGTCAAAAATGAATGCAT+AGG | - | chr1_1:18734758-18734777 | None:intergenic | 30.0% | |
| !! | GCATTCATTTTTGACAGAAA+TGG | + | chr1_1:18734760-18734779 | Msa0012500:intron | 30.0% |
| AAAAAAGACACTAGTTGCAT+AGG | - | chr1_1:18734801-18734820 | None:intergenic | 30.0% | |
| !!! | TATGCAACTAGTGTCTTTTT+TGG | + | chr1_1:18734800-18734819 | Msa0012500:intron | 30.0% |
| !!! | ATGCAACTAGTGTCTTTTTT+GGG | + | chr1_1:18734801-18734820 | Msa0012500:intron | 30.0% |
| ACACCTTAGAGTGATTAATT+AGG | + | chr1_1:18734831-18734850 | Msa0012500:intron | 30.0% | |
| CTTCCTAATTAATCACTCTA+AGG | - | chr1_1:18734837-18734856 | None:intergenic | 30.0% | |
| TGATAAAAGAGAGTAGAAGT+TGG | - | chr1_1:18734912-18734931 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTCAGTGCTTTCA+AGG | + | chr1_1:18734962-18734981 | Msa0012500:intron | 30.0% |
| ! | TTTCTTTTCAGTGCTTTCAA+GGG | + | chr1_1:18734963-18734982 | Msa0012500:intron | 30.0% |
| ! | GTAGGAAATGAAAAGTTGAT+TGG | + | chr1_1:18734993-18735012 | Msa0012500:CDS | 30.0% |
| ! | AGGAAATGAAAAGTTGATTG+GGG | + | chr1_1:18734995-18735014 | Msa0012500:CDS | 30.0% |
| ! | GCTATATTTTACATATGCCA+TGG | + | chr1_1:18735276-18735295 | Msa0012500:CDS | 30.0% |
| !! | ACTGATTTTCAGCTTAAGAT+TGG | - | chr1_1:18735371-18735390 | None:intergenic | 30.0% |
| !! | ATGCATCACATATTTTTCAG+TGG | + | chr1_1:18735428-18735447 | Msa0012500:intron | 30.0% |
| AAAATATGCGACTGATAAAC+GGG | - | chr1_1:18735454-18735473 | None:intergenic | 30.0% | |
| !! | CACATTTTGTTTGCTTTGAT+GGG | - | chr1_1:18735552-18735571 | None:intergenic | 30.0% |
| !! | TCACATTTTGTTTGCTTTGA+TGG | - | chr1_1:18735553-18735572 | None:intergenic | 30.0% |
| ACAACACTTTGTACTAGAAA+AGG | - | chr1_1:18735870-18735889 | None:intergenic | 30.0% | |
| ! | ACTGTAGGAAACTTCTTTTA+AGG | + | chr1_1:18735953-18735972 | Msa0012500:intron | 30.0% |
| AACCATAAAAGTTTCTTCTG+CGG | + | chr1_1:18736003-18736022 | Msa0012500:intron | 30.0% | |
| CTTCTATATGCATGCATTAA+TGG | - | chr1_1:18736193-18736212 | None:intergenic | 30.0% | |
| ! | TATAGTCTCAGATTTGCTTA+AGG | - | chr1_1:18736233-18736252 | None:intergenic | 30.0% |
| TCTATACTAAGCAGCTAAAA+AGG | - | chr1_1:18736805-18736824 | None:intergenic | 30.0% | |
| AATCCTAAATCATGCACAAT+TGG | - | chr1_1:18736839-18736858 | None:intergenic | 30.0% | |
| TTGAAAGTAACATATACGGT+TGG | + | chr1_1:18736950-18736969 | Msa0012500:intron | 30.0% | |
| !! | TGTAAAACTTGCTATATTGG+TGG | + | chr1_1:18736990-18737009 | Msa0012500:intron | 30.0% |
| ACTTGAATATAGTGTCTTCT+TGG | + | chr1_1:18737229-18737248 | Msa0012500:exon | 30.0% | |
| ATCATTTGAGTCTAATTAGG+GGG | + | chr1_1:18737262-18737281 | Msa0012500:three_prime_UTR | 30.0% | |
| TTATAGATCATAAAGGGGTT+AGG | - | chr1_1:18737305-18737324 | None:intergenic | 30.0% | |
| TTGGCAGAGGAAAAATGATT+GGG | - | chr1_1:18730725-18730744 | None:intergenic | 35.0% | |
| TTTGGCAGAGGAAAAATGAT+TGG | - | chr1_1:18730726-18730745 | None:intergenic | 35.0% | |
| !! | AAGAAAAGAGTATTTGGCAG+AGG | - | chr1_1:18730738-18730757 | None:intergenic | 35.0% |
| !!! | TTCAACAGACTTTTTCAGCT+TGG | - | chr1_1:18730804-18730823 | None:intergenic | 35.0% |
| GAAGAAAAGAAAGAAGAGAC+TGG | - | chr1_1:18730853-18730872 | None:intergenic | 35.0% | |
| ! | TCTGTCATATTTCTCTGAGA+CGG | - | chr1_1:18730965-18730984 | None:intergenic | 35.0% |
| TTCACTACTATTGACAAGAC+GGG | + | chr1_1:18731018-18731037 | Msa0012500:intron | 35.0% | |
| ! | ATTTCCTTTTTGCAGGGTTA+TGG | + | chr1_1:18731135-18731154 | Msa0012500:intron | 35.0% |
| ! | TTTCCTTTTTGCAGGGTTAT+GGG | + | chr1_1:18731136-18731155 | Msa0012500:intron | 35.0% |
| TCAAAAACCTCATCAGTGTA+GGG | - | chr1_1:18731164-18731183 | None:intergenic | 35.0% | |
| ATCAAAAACCTCATCAGTGT+AGG | - | chr1_1:18731165-18731184 | None:intergenic | 35.0% | |
| !! | TGATGAGGTTTTTGATTGCT+CGG | + | chr1_1:18731169-18731188 | Msa0012500:CDS | 35.0% |
| ! | GAATCTGAAATGAACCCATT+AGG | - | chr1_1:18731261-18731280 | None:intergenic | 35.0% |
| !! | TTCTGAAGTTCCTGATGAAT+TGG | + | chr1_1:18731278-18731297 | Msa0012500:CDS | 35.0% |
| AGGGTCATTTGATTGAATCT+AGG | + | chr1_1:18731562-18731581 | Msa0012500:intron | 35.0% | |
| CAAAATGCTAGTATTAGCCA+TGG | - | chr1_1:18731658-18731677 | None:intergenic | 35.0% | |
| ! | TGATGTATTTTGTCCAAGTG+GGG | + | chr1_1:18731731-18731750 | Msa0012500:intron | 35.0% |
| ATTCCACATGGCAAAAGAAA+AGG | - | chr1_1:18731840-18731859 | None:intergenic | 35.0% | |
| TTGCCATGTGGAATTTATTG+AGG | + | chr1_1:18731846-18731865 | Msa0012500:intron | 35.0% | |
| GTACCTCAATAAATTCCACA+TGG | - | chr1_1:18731852-18731871 | None:intergenic | 35.0% | |
| TCTTCTACATTGTGTTTGGT+TGG | + | chr1_1:18731967-18731986 | Msa0012500:intron | 35.0% | |
| !!! | GAGTTGTTTTTGTGTCCTTT+TGG | + | chr1_1:18732485-18732504 | Msa0012500:intron | 35.0% |
| CCATGAACAAGAAAACCAAA+AGG | - | chr1_1:18732503-18732522 | None:intergenic | 35.0% | |
| !!! | CCTTTTGGTTTTCTTGTTCA+TGG | + | chr1_1:18732500-18732519 | Msa0012500:intron | 35.0% |
| TTGGATACACTCTGAACAAA+TGG | - | chr1_1:18732667-18732686 | None:intergenic | 35.0% | |
| TAAAATGTACAAACGGATCG+AGG | - | chr1_1:18732691-18732710 | None:intergenic | 35.0% | |
| !!! | TTTTATTTTCGGGGTAGGAT+GGG | - | chr1_1:18732738-18732757 | None:intergenic | 35.0% |
| !!! | TTTTTATTTTCGGGGTAGGA+TGG | - | chr1_1:18732739-18732758 | None:intergenic | 35.0% |
| ! | GAGGTATTTGTAGAAGATTC+TGG | + | chr1_1:18732801-18732820 | Msa0012500:intron | 35.0% |
| !!! | TGACTTCAACTAGTTTTTGG+TGG | - | chr1_1:18732856-18732875 | None:intergenic | 35.0% |
| CAGAGTCTATTAGACTTACT+TGG | - | chr1_1:18733023-18733042 | None:intergenic | 35.0% | |
| CAAGTAAGTCTAATAGACTC+TGG | + | chr1_1:18733021-18733040 | Msa0012500:intron | 35.0% | |
| CCAATTTCTATTAGTCATCG+AGG | - | chr1_1:18733217-18733236 | None:intergenic | 35.0% | |
| CCTCGATGACTAATAGAAAT+TGG | + | chr1_1:18733214-18733233 | Msa0012500:intron | 35.0% | |
| !!! | TGATGTATTTTTTCCAAGCG+GGG | + | chr1_1:18733298-18733317 | Msa0012500:intron | 35.0% |
| AAAGACAGAATGTGAACCAA+GGG | - | chr1_1:18733388-18733407 | None:intergenic | 35.0% | |
| AAAAGACAGAATGTGAACCA+AGG | - | chr1_1:18733389-18733408 | None:intergenic | 35.0% | |
| !! | CTTTTGCTATCTGGAATTGA+AGG | + | chr1_1:18733410-18733429 | Msa0012500:intron | 35.0% |
| ! | ATCCTGACTGTTCTTTTTGA+TGG | + | chr1_1:18733486-18733505 | Msa0012500:intron | 35.0% |
| !!! | CTGTTCTTTTTGATGGTGTT+TGG | + | chr1_1:18733493-18733512 | Msa0012500:intron | 35.0% |
| !!! | TCTTTTTGATGGTGTTTGGT+TGG | + | chr1_1:18733497-18733516 | Msa0012500:intron | 35.0% |
| TCTTATCTCCCAATATTGGA+GGG | - | chr1_1:18733632-18733651 | None:intergenic | 35.0% | |
| ATCTTATCTCCCAATATTGG+AGG | - | chr1_1:18733633-18733652 | None:intergenic | 35.0% | |
| CACATCTTATCTCCCAATAT+TGG | - | chr1_1:18733636-18733655 | None:intergenic | 35.0% | |
| GCCAAATCTGTAGTTTATAG+AGG | - | chr1_1:18734637-18734656 | None:intergenic | 35.0% | |
| TATAAAAATGTTGACGCACG+CGG | + | chr1_1:18735041-18735060 | Msa0012500:CDS | 35.0% | |
| CAAACACTCACAAAAAACCA+TGG | - | chr1_1:18735296-18735315 | None:intergenic | 35.0% | |
| !!! | CATGGTTTTTTGTGAGTGTT+TGG | + | chr1_1:18735294-18735313 | Msa0012500:CDS | 35.0% |
| ! | AGTGTTTGGAGATTTGTTTC+CGG | + | chr1_1:18735308-18735327 | Msa0012500:CDS | 35.0% |
| !! | TGTGTTGTACTGATTCACAT+TGG | + | chr1_1:18735397-18735416 | Msa0012500:intron | 35.0% |
| GATGGGATACTAATTCAATC+TGG | - | chr1_1:18735535-18735554 | None:intergenic | 35.0% | |
| TTAACTAAGGACATTGCCTA+TGG | - | chr1_1:18735621-18735640 | None:intergenic | 35.0% | |
| AACTTCACTAAACTGTTCGT+AGG | - | chr1_1:18735820-18735839 | None:intergenic | 35.0% | |
| ! | AGTTTGTTCGAATTCCACTA+CGG | - | chr1_1:18735904-18735923 | None:intergenic | 35.0% |
| TTTGTAGAGGTTGAGATCTT+TGG | + | chr1_1:18736059-18736078 | Msa0012500:intron | 35.0% | |
| ACTCAATATCATGTTGCGAA+AGG | + | chr1_1:18736608-18736627 | Msa0012500:intron | 35.0% | |
| CTCAATATCATGTTGCGAAA+GGG | + | chr1_1:18736609-18736628 | Msa0012500:intron | 35.0% | |
| TGACCAATTGTGCATGATTT+AGG | + | chr1_1:18736833-18736852 | Msa0012500:intron | 35.0% | |
| AAGTTGTTCGTAAGTGATGT+TGG | + | chr1_1:18737115-18737134 | Msa0012500:CDS | 35.0% | |
| CAAGAACATGTGTTGAAGAG+AGG | - | chr1_1:18730683-18730702 | None:intergenic | 40.0% | |
| TGGGTTTCACTATTTGAGAG+TGG | - | chr1_1:18730706-18730725 | None:intergenic | 40.0% | |
| !! | GGGCAGAAGAAAAGAGTATT+TGG | - | chr1_1:18730744-18730763 | None:intergenic | 40.0% |
| ! | TGTTGTTGCTTCAGCCATTA+GGG | - | chr1_1:18730765-18730784 | None:intergenic | 40.0% |
| ! | AAACCTTGGTTCTTCTACAC+AGG | + | chr1_1:18730823-18730842 | Msa0012500:CDS | 40.0% |
| TTACCTGTGTAGAAGAACCA+AGG | - | chr1_1:18730829-18730848 | None:intergenic | 40.0% | |
| TGAAATGAGATTCCTGACTG+CGG | - | chr1_1:18730941-18730960 | None:intergenic | 40.0% | |
| CAATAGTAGTGAATGAGTCC+AGG | - | chr1_1:18731011-18731030 | None:intergenic | 40.0% | |
| ! | TTCCTTTTTGCAGGGTTATG+GGG | + | chr1_1:18731137-18731156 | Msa0012500:intron | 40.0% |
| !! | GTTTTTGATTGCTCGGTCAA+TGG | + | chr1_1:18731176-18731195 | Msa0012500:CDS | 40.0% |
| CAGCAAAGATGTTTGTCCAA+TGG | + | chr1_1:18731211-18731230 | Msa0012500:CDS | 40.0% | |
| TGTTTGTCCAATGGCAGAAA+TGG | + | chr1_1:18731220-18731239 | Msa0012500:CDS | 40.0% | |
| ! | CTTTTTGCAGGGTTTGTCTA+AGG | + | chr1_1:18731314-18731333 | Msa0012500:CDS | 40.0% |
| TAGCTTGGACAATCATCACT+GGG | - | chr1_1:18731347-18731366 | None:intergenic | 40.0% | |
| AAGGGAAATGTCTACTAGCT+TGG | - | chr1_1:18731362-18731381 | None:intergenic | 40.0% | |
| TAGTAGACATTTCCCTTCCA+AGG | + | chr1_1:18731365-18731384 | Msa0012500:CDS | 40.0% | |
| ATTGAATCTGGTCCTTGGAA+GGG | - | chr1_1:18731380-18731399 | None:intergenic | 40.0% | |
| AATTGAATCTGGTCCTTGGA+AGG | - | chr1_1:18731381-18731400 | None:intergenic | 40.0% | |
| CTTGAATTGAATCTGGTCCT+TGG | - | chr1_1:18731385-18731404 | None:intergenic | 40.0% | |
| TCTCTATACTAAGACGTGGT+AGG | - | chr1_1:18731496-18731515 | None:intergenic | 40.0% | |
| AGGACAATGAAAGTGAACCA+AGG | - | chr1_1:18731820-18731839 | None:intergenic | 40.0% | |
| ! | TGTCCTTTTCTTTTGCCATG+TGG | + | chr1_1:18731834-18731853 | Msa0012500:intron | 40.0% |
| TCTACATTGTGTTTGGTTGG+AGG | + | chr1_1:18731970-18731989 | Msa0012500:intron | 40.0% | |
| CTACATTGTGTTTGGTTGGA+GGG | + | chr1_1:18731971-18731990 | Msa0012500:intron | 40.0% | |
| AACTAGAGCAACTCAATGTG+TGG | - | chr1_1:18732402-18732421 | None:intergenic | 40.0% | |
| ACACACATATGTGTGACATG+AGG | - | chr1_1:18732439-18732458 | None:intergenic | 40.0% | |
| TTAATGGGACACCTTAGTGA+TGG | + | chr1_1:18732876-18732895 | Msa0012500:intron | 40.0% | |
| ACAAAGTTGGCGAGCTTATA+AGG | + | chr1_1:18733109-18733128 | Msa0012500:intron | 40.0% | |
| AAGACAGAATGTGAACCAAG+GGG | - | chr1_1:18733387-18733406 | None:intergenic | 40.0% | |
| CACCATCAAAAAGAACAGTC+AGG | - | chr1_1:18733491-18733510 | None:intergenic | 40.0% | |
| GTTTGGTTGGAGTGAAATAG+AGG | + | chr1_1:18733510-18733529 | Msa0012500:intron | 40.0% | |
| TTGGAGTGAAATAGAGGAGA+GGG | + | chr1_1:18733516-18733535 | Msa0012500:intron | 40.0% | |
| TGTTAACTCCCCTCCAATAT+TGG | + | chr1_1:18733620-18733639 | Msa0012500:intron | 40.0% | |
| GTTAACTCCCCTCCAATATT+GGG | + | chr1_1:18733621-18733640 | Msa0012500:intron | 40.0% | |
| CTTATCTCCCAATATTGGAG+GGG | - | chr1_1:18733631-18733650 | None:intergenic | 40.0% | |
| GCTTATCCAGATACTTGCAT+TGG | + | chr1_1:18733839-18733858 | Msa0012500:intron | 40.0% | |
| !! | GCGGATAAACTAGTTGATAG+TGG | + | chr1_1:18734351-18734370 | Msa0012500:intron | 40.0% |
| ! | TGACAGAAATGGCTTTTGAG+AGG | + | chr1_1:18734771-18734790 | Msa0012500:intron | 40.0% |
| ! | TTTTCAGTGCTTTCAAGGGA+AGG | + | chr1_1:18734967-18734986 | Msa0012500:intron | 40.0% |
| TTTCAGTGCTTTCAAGGGAA+GGG | + | chr1_1:18734968-18734987 | Msa0012500:intron | 40.0% | |
| ! | TGAAAAGTTGATTGGGGTTC+TGG | + | chr1_1:18735001-18735020 | Msa0012500:CDS | 40.0% |
| AGCACTTTGCTAAACGTTCA+GGG | - | chr1_1:18735259-18735278 | None:intergenic | 40.0% | |
| TAGCACTTTGCTAAACGTTC+AGG | - | chr1_1:18735260-18735279 | None:intergenic | 40.0% | |
| CTAACATGCTACTGAGAGAT+GGG | - | chr1_1:18735484-18735503 | None:intergenic | 40.0% | |
| TCTAACATGCTACTGAGAGA+TGG | - | chr1_1:18735485-18735504 | None:intergenic | 40.0% | |
| ATCTCTCAGTAGCATGTTAG+AGG | + | chr1_1:18735484-18735503 | Msa0012500:intron | 40.0% | |
| TCTCTCAGTAGCATGTTAGA+GGG | + | chr1_1:18735485-18735504 | Msa0012500:intron | 40.0% | |
| !! | TGTACTAGAAAAGGTGTCGT+GGG | - | chr1_1:18735861-18735880 | None:intergenic | 40.0% |
| !! | TTGTACTAGAAAAGGTGTCG+TGG | - | chr1_1:18735862-18735881 | None:intergenic | 40.0% |
| ATTCCACTACGGTACAGTAT+TGG | - | chr1_1:18735893-18735912 | None:intergenic | 40.0% | |
| GAACAAACTTCTATCTTCCG+TGG | + | chr1_1:18735915-18735934 | Msa0012500:intron | 40.0% | |
| TCCACATTTGACAACACTGT+AGG | + | chr1_1:18735938-18735957 | Msa0012500:intron | 40.0% | |
| TCCTACAGTGTTGTCAAATG+TGG | - | chr1_1:18735942-18735961 | None:intergenic | 40.0% | |
| GATACCATAGTCGTTTGTAG+AGG | + | chr1_1:18736046-18736065 | Msa0012500:intron | 40.0% | |
| TCAACCTCTACAAACGACTA+TGG | - | chr1_1:18736053-18736072 | None:intergenic | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | - | chr1_1:18736467-18736486 | None:intergenic | 40.0% |
| ! | TTCCAACGTGAGCAATGTTT+TGG | + | chr1_1:18736641-18736660 | Msa0012500:intron | 40.0% |
| TCAAGCAAAGCCGTGAAAAT+GGG | - | chr1_1:18737056-18737075 | None:intergenic | 40.0% | |
| ATCAAGCAAAGCCGTGAAAA+TGG | - | chr1_1:18737057-18737076 | None:intergenic | 40.0% | |
| TTCACTTCAACGTCTTGGAT+AGG | - | chr1_1:18737187-18737206 | None:intergenic | 40.0% | |
| ! | AAGAGGTACAAGAAAGCACG+TGG | - | chr1_1:18730646-18730665 | None:intergenic | 45.0% |
| ! | CTCTTTTCTTCTGCCCCTAA+TGG | + | chr1_1:18730748-18730767 | Msa0012500:exon | 45.0% |
| ! | GTTGTTGCTTCAGCCATTAG+GGG | - | chr1_1:18730764-18730783 | None:intergenic | 45.0% |
| ! | CTGTTGTTGCTTCAGCCATT+AGG | - | chr1_1:18730766-18730785 | None:intergenic | 45.0% |
| TTGTCCAATGGCAGAAATGG+AGG | + | chr1_1:18731223-18731242 | Msa0012500:CDS | 45.0% | |
| TAGTCCTCCATTTCTGCCAT+TGG | - | chr1_1:18731230-18731249 | None:intergenic | 45.0% | |
| ! | GCAGAAATGGAGGACTAGTA+TGG | + | chr1_1:18731233-18731252 | Msa0012500:CDS | 45.0% |
| ! | AGGACTAGTATGGTGCCTAA+TGG | + | chr1_1:18731243-18731262 | Msa0012500:CDS | 45.0% |
| ! | GGACTAGTATGGTGCCTAAT+GGG | + | chr1_1:18731244-18731263 | Msa0012500:CDS | 45.0% |
| CTAGCTTGGACAATCATCAC+TGG | - | chr1_1:18731348-18731367 | None:intergenic | 45.0% | |
| ! | TTTTCCTAATGGTCCCCACT+TGG | - | chr1_1:18731747-18731766 | None:intergenic | 45.0% |
| GTAACCAGTTGGAAACTCCT+TGG | + | chr1_1:18731800-18731819 | Msa0012500:intron | 45.0% | |
| TGAACCAAGGAGTTTCCAAC+TGG | - | chr1_1:18731807-18731826 | None:intergenic | 45.0% | |
| GTTTGGTTGGAGGGAAATAG+AGG | + | chr1_1:18731980-18731999 | Msa0012500:intron | 45.0% | |
| TAGAGCAACTCAATGTGTGG+TGG | - | chr1_1:18732399-18732418 | None:intergenic | 45.0% | |
| GGTTGTCGAGAGTCTCATAT+TGG | + | chr1_1:18732521-18732540 | Msa0012500:intron | 45.0% | |
| ! | CAAAACTGGCTTCTAACGTG+AGG | - | chr1_1:18732588-18732607 | None:intergenic | 45.0% |
| ! | ACGTTAGAAGCCAGTTTTGC+AGG | + | chr1_1:18732589-18732608 | Msa0012500:intron | 45.0% |
| ! | CGTTAGAAGCCAGTTTTGCA+GGG | + | chr1_1:18732590-18732609 | Msa0012500:intron | 45.0% |
| CTAACTCAACCCTGCAAAAC+TGG | - | chr1_1:18732602-18732621 | None:intergenic | 45.0% | |
| ! | CAGTTTTGCAGGGTTGAGTT+AGG | + | chr1_1:18732600-18732619 | Msa0012500:intron | 45.0% |
| TGTACAAACGGATCGAGGAT+TGG | - | chr1_1:18732686-18732705 | None:intergenic | 45.0% | |
| ! | CACCTTAGTGATGGAGCATA+CGG | + | chr1_1:18732885-18732904 | Msa0012500:intron | 45.0% |
| TACCGTATGCTCCATCACTA+AGG | - | chr1_1:18732890-18732909 | None:intergenic | 45.0% | |
| GCATACGGTACTCATCTTGA+TGG | + | chr1_1:18732900-18732919 | Msa0012500:intron | 45.0% | |
| !! | GTACTCATCTTGATGGTGCA+AGG | + | chr1_1:18732907-18732926 | Msa0012500:intron | 45.0% |
| GTGCAAGGTTCAAGACAGTT+GGG | + | chr1_1:18732922-18732941 | Msa0012500:intron | 45.0% | |
| GGTTCAAGACAGTTGGGATT+AGG | + | chr1_1:18732928-18732947 | Msa0012500:intron | 45.0% | |
| TCAAGACAGTTGGGATTAGG+TGG | + | chr1_1:18732931-18732950 | Msa0012500:intron | 45.0% | |
| CAAGACAGTTGGGATTAGGT+GGG | + | chr1_1:18732932-18732951 | Msa0012500:intron | 45.0% | |
| AAGACAGTTGGGATTAGGTG+GGG | + | chr1_1:18732933-18732952 | Msa0012500:intron | 45.0% | |
| AAGTTGGCGAGCTTATAAGG+TGG | + | chr1_1:18733112-18733131 | Msa0012500:intron | 45.0% | |
| AGTTGGCGAGCTTATAAGGT+GGG | + | chr1_1:18733113-18733132 | Msa0012500:intron | 45.0% | |
| AGACAGAATGTGAACCAAGG+GGG | - | chr1_1:18733386-18733405 | None:intergenic | 45.0% | |
| GTTGGAGTGAAATAGAGGAG+AGG | + | chr1_1:18733515-18733534 | Msa0012500:intron | 45.0% | |
| TGGAGTGAAATAGAGGAGAG+GGG | + | chr1_1:18733517-18733536 | Msa0012500:intron | 45.0% | |
| AGGGGAGCTGAAATTGTGTA+AGG | - | chr1_1:18733694-18733713 | None:intergenic | 45.0% | |
| TACTGGACAAGACAATTGCG+AGG | + | chr1_1:18734243-18734262 | Msa0012500:CDS | 45.0% | |
| ! | AAAGGAACTTGGGTCTTGTG+TGG | + | chr1_1:18734318-18734337 | Msa0012500:intron | 45.0% |
| ATGGTCTGCTATGTTTGTCG+AGG | - | chr1_1:18734659-18734678 | None:intergenic | 45.0% | |
| TGAATGCATAGGAAGGGAAG+TGG | - | chr1_1:18734747-18734766 | None:intergenic | 45.0% | |
| TTTCTTGTGTTGCCTTGTCC+AGG | - | chr1_1:18735337-18735356 | None:intergenic | 45.0% | |
| GGACAAGGCAACACAAGAAA+AGG | + | chr1_1:18735337-18735356 | Msa0012500:CDS | 45.0% | |
| !! | AAAGGTGTCGTGGGACAATA+GGG | - | chr1_1:18735852-18735871 | None:intergenic | 45.0% |
| !! | AAAAGGTGTCGTGGGACAAT+AGG | - | chr1_1:18735853-18735872 | None:intergenic | 45.0% |
| TGTCCAATACTGTACCGTAG+TGG | + | chr1_1:18735887-18735906 | Msa0012500:intron | 45.0% | |
| GTGTTGTCAAATGTGGACCA+CGG | - | chr1_1:18735935-18735954 | None:intergenic | 45.0% | |
| ! | CGCCGCAGAAGAAACTTTTA+TGG | - | chr1_1:18736008-18736027 | None:intergenic | 45.0% |
| GTCCAAAACGTTACTCACGT+TGG | + | chr1_1:18736462-18736481 | Msa0012500:intron | 45.0% | |
| GTCCAAAACATTGCTCACGT+TGG | - | chr1_1:18736646-18736665 | None:intergenic | 45.0% | |
| GACATTCTCCCAGAAGAGTA+TGG | + | chr1_1:18737142-18737161 | Msa0012500:CDS | 45.0% | |
| ! | ATTCTCCCAGAAGAGTATGG+TGG | + | chr1_1:18737145-18737164 | Msa0012500:CDS | 45.0% |
| CTCTTCCACCATACTCTTCT+GGG | - | chr1_1:18737153-18737172 | None:intergenic | 45.0% | |
| GTGGTTTCACTTCAACGTCT+TGG | - | chr1_1:18737192-18737211 | None:intergenic | 45.0% | |
| AGACGTTGAAGTGAAACCAC+CGG | + | chr1_1:18737192-18737211 | Msa0012500:CDS | 45.0% | |
| GAAGTGAAACCACCGGAAAA+CGG | + | chr1_1:18737199-18737218 | Msa0012500:CDS | 45.0% | |
| ! | CAAGTCGTTCTTCCGTTTTC+CGG | - | chr1_1:18737214-18737233 | None:intergenic | 45.0% |
| !!! | AAACATTTTTTTAATTTTTT+TGG | + | chr1_1:18736576-18736595 | Msa0012500:intron | 5.0% |
| ! | AGGTACAAGAAAGCACGTGG+AGG | - | chr1_1:18730643-18730662 | None:intergenic | 50.0% |
| GAATCAGATTCTCCGCAGTC+AGG | + | chr1_1:18730926-18730945 | Msa0012500:intron | 50.0% | |
| GATGTGAGATTCCTGACTGC+AGG | + | chr1_1:18730983-18731002 | Msa0012500:intron | 50.0% | |
| GTCCCCATAACCCTGCAAAA+AGG | - | chr1_1:18731142-18731161 | None:intergenic | 50.0% | |
| TTGTCCAAGTGGGGACCATT+AGG | + | chr1_1:18731740-18731759 | Msa0012500:intron | 50.0% | |
| !! | ATTTTCGGGGTAGGATGGGT+AGG | - | chr1_1:18732734-18732753 | None:intergenic | 50.0% |
| GGTGCAAGGTTCAAGACAGT+TGG | + | chr1_1:18732921-18732940 | Msa0012500:intron | 50.0% | |
| TTAGGTGGGGTAGGTGGAAT+AGG | + | chr1_1:18732946-18732965 | Msa0012500:intron | 50.0% | |
| GGTAGGTGGAATAGGTGGAA+AGG | + | chr1_1:18732954-18732973 | Msa0012500:intron | 50.0% | |
| ! | TTTTCCAAGCGGGGACCATT+AGG | + | chr1_1:18733307-18733326 | Msa0012500:intron | 50.0% |
| TGACCAATTGAGTTCCCCCT+TGG | + | chr1_1:18733369-18733388 | Msa0012500:intron | 50.0% | |
| GAACCAAGGGGGAACTCAAT+TGG | - | chr1_1:18733375-18733394 | None:intergenic | 50.0% | |
| !! | ATTGGGGTTCTGGATCTGCA+GGG | + | chr1_1:18735011-18735030 | Msa0012500:CDS | 50.0% |
| GACGCACGCGGTTTAATTAC+TGG | + | chr1_1:18735053-18735072 | Msa0012500:CDS | 50.0% | |
| ! | GAGATTTGTTTCCGGCTTCC+TGG | + | chr1_1:18735316-18735335 | Msa0012500:CDS | 50.0% |
| ! | GTGCCAGCTTCCCATTTTCA+CGG | + | chr1_1:18737043-18737062 | Msa0012500:intron | 50.0% |
| AAGCCGTGAAAATGGGAAGC+TGG | - | chr1_1:18737049-18737068 | None:intergenic | 50.0% | |
| GCTCTTCCACCATACTCTTC+TGG | - | chr1_1:18737154-18737173 | None:intergenic | 50.0% | |
| GATTCCTGACTGCAGGAACC+TGG | + | chr1_1:18730990-18731009 | Msa0012500:intron | 55.0% | |
| ATGGGGACCCTACACTGATG+AGG | + | chr1_1:18731154-18731173 | Msa0012500:CDS | 55.0% | |
| CAGTTGGGATTAGGTGGGGT+AGG | + | chr1_1:18732937-18732956 | Msa0012500:intron | 55.0% | |
| TTGGGATTAGGTGGGGTAGG+TGG | + | chr1_1:18732940-18732959 | Msa0012500:intron | 55.0% | |
| TTTGCCTAATGGTCCCCGCT+TGG | - | chr1_1:18733314-18733333 | None:intergenic | 55.0% | |
| CAGTGCTTTCAAGGGAAGGG+AGG | + | chr1_1:18734971-18734990 | Msa0012500:intron | 55.0% | |
| GCTTTCAAGGGAAGGGAGGT+AGG | + | chr1_1:18734975-18734994 | Msa0012500:CDS | 55.0% | |
| !! | GATTGGGGTTCTGGATCTGC+AGG | + | chr1_1:18735010-18735029 | Msa0012500:CDS | 55.0% |
| TGTTTCCGGCTTCCTGGACA+AGG | + | chr1_1:18735322-18735341 | Msa0012500:CDS | 55.0% | |
| TGTTGCCTTGTCCAGGAAGC+CGG | - | chr1_1:18735330-18735349 | None:intergenic | 55.0% | |
| ! | GTCGTTCTTCCGTTTTCCGG+TGG | - | chr1_1:18737211-18737230 | None:intergenic | 55.0% |
| GAGTCCAGGTTCCTGCAGTC+AGG | - | chr1_1:18730997-18731016 | None:intergenic | 60.0% | |
| TTCGGGGTAGGATGGGTAGG+AGG | - | chr1_1:18732731-18732750 | None:intergenic | 60.0% | |
| GGTGGGGTAGGTGGAATAGG+TGG | + | chr1_1:18732949-18732968 | Msa0012500:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18730587 | 18737474 | 18730587 | ID=Msa0012500;Name=Msa0012500 |
| chr1_1 | mRNA | 18730587 | 18737474 | 18730587 | ID=Msa0012500-mRNA-1;Parent=Msa0012500;Name=Msa0012500-mRNA-1;_AED=0.22;_eAED=0.22;_QI=180|1|1|1|1|1|6|240|249 |
| chr1_1 | exon | 18730587 | 18730844 | 18730587 | ID=Msa0012500-mRNA-1:exon:6917;Parent=Msa0012500-mRNA-1 |
| chr1_1 | exon | 18731150 | 18731405 | 18731150 | ID=Msa0012500-mRNA-1:exon:6918;Parent=Msa0012500-mRNA-1 |
| chr1_1 | exon | 18734228 | 18734264 | 18734228 | ID=Msa0012500-mRNA-1:exon:6919;Parent=Msa0012500-mRNA-1 |
| chr1_1 | exon | 18734974 | 18735091 | 18734974 | ID=Msa0012500-mRNA-1:exon:6920;Parent=Msa0012500-mRNA-1 |
| chr1_1 | exon | 18735248 | 18735358 | 18735248 | ID=Msa0012500-mRNA-1:exon:6921;Parent=Msa0012500-mRNA-1 |
| chr1_1 | exon | 18737085 | 18737474 | 18737085 | ID=Msa0012500-mRNA-1:exon:6922;Parent=Msa0012500-mRNA-1 |
| chr1_1 | five_prime_UTR | 18730587 | 18730766 | 18730587 | ID=Msa0012500-mRNA-1:five_prime_utr;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18730767 | 18730844 | 18730767 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18731150 | 18731405 | 18731150 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18734228 | 18734264 | 18734228 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18734974 | 18735091 | 18734974 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18735248 | 18735358 | 18735248 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | CDS | 18737085 | 18737234 | 18737085 | ID=Msa0012500-mRNA-1:cds;Parent=Msa0012500-mRNA-1 |
| chr1_1 | three_prime_UTR | 18737235 | 18737474 | 18737235 | ID=Msa0012500-mRNA-1:three_prime_utr;Parent=Msa0012500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
