Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115070 | XP_013466596.1 | 95.582 | 249 | 10 | 1 | 1 | 248 | 1 | 249 | 1.86e-172 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115070 | sp|P33324|YKJ1_YEAST | 29.333 | 225 | 134 | 7 | 29 | 231 | 51 | 272 | 6.56e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115070 | A0A072VGS1 | 95.582 | 249 | 10 | 1 | 1 | 248 | 1 | 249 | 8.90e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012500 | Msa0115070 | 0.812117 | 4.982257e-51 | -8.615850e-47 |
| Msa0061300 | Msa0115070 | 0.930067 | 2.805174e-93 | -8.615850e-47 |
| Msa0115070 | Msa0942080 | -0.806085 | 9.761168e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115070 | MtrunA17_Chr1g0161441 | 95.582 | 249 | 10 | 1 | 1 | 248 | 1 | 249 | 1.71e-176 | 485 |
| Msa0115070 | MtrunA17_Chr8g0385691 | 42.489 | 233 | 129 | 2 | 5 | 236 | 23 | 251 | 3.89e-61 | 192 |
| Msa0115070 | MtrunA17_Chr8g0385681 | 40.171 | 234 | 135 | 2 | 5 | 237 | 26 | 255 | 1.32e-58 | 186 |
| Msa0115070 | MtrunA17_Chr3g0131581 | 39.914 | 233 | 132 | 3 | 8 | 236 | 43 | 271 | 4.95e-58 | 185 |
| Msa0115070 | MtrunA17_Chr3g0141821 | 29.954 | 217 | 134 | 7 | 32 | 232 | 94 | 308 | 1.35e-17 | 81.6 |
| Msa0115070 | MtrunA17_Chr1g0155521 | 30.415 | 217 | 133 | 7 | 32 | 232 | 113 | 327 | 1.69e-17 | 81.3 |
| Msa0115070 | MtrunA17_Chr1g0155071 | 29.915 | 234 | 153 | 7 | 3 | 231 | 16 | 243 | 1.35e-16 | 77.4 |
| Msa0115070 | MtrunA17_Chr2g0290661 | 26.923 | 208 | 126 | 7 | 13 | 203 | 23 | 221 | 9.16e-16 | 75.5 |
| Msa0115070 | MtrunA17_Chr4g0058811 | 27.174 | 184 | 126 | 5 | 12 | 192 | 53 | 231 | 2.53e-15 | 73.6 |
| Msa0115070 | MtrunA17_Chr3g0144911 | 30.455 | 220 | 134 | 8 | 25 | 227 | 103 | 320 | 3.26e-15 | 74.3 |
| Msa0115070 | MtrunA17_Chr7g0254621 | 27.094 | 203 | 141 | 3 | 28 | 228 | 43 | 240 | 4.13e-15 | 73.6 |
| Msa0115070 | MtrunA17_Chr8g0373391 | 27.234 | 235 | 160 | 7 | 2 | 231 | 15 | 243 | 9.02e-15 | 72.4 |
| Msa0115070 | MtrunA17_Chr4g0058791 | 24.615 | 195 | 139 | 5 | 12 | 203 | 51 | 240 | 1.40e-14 | 71.2 |
| Msa0115070 | MtrunA17_Chr3g0144891 | 29.358 | 218 | 135 | 8 | 27 | 227 | 92 | 307 | 2.76e-13 | 68.9 |
| Msa0115070 | MtrunA17_Chr5g0425421 | 28.000 | 175 | 117 | 5 | 28 | 200 | 45 | 212 | 2.93e-12 | 65.5 |
| Msa0115070 | MtrunA17_Chr3g0115591 | 25.446 | 224 | 157 | 7 | 8 | 227 | 27 | 244 | 2.12e-11 | 62.8 |
| Msa0115070 | MtrunA17_Chr4g0004981 | 25.877 | 228 | 150 | 7 | 28 | 241 | 122 | 344 | 5.04e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115070 | AT1G14820.3 | 68.696 | 230 | 71 | 1 | 9 | 237 | 8 | 237 | 7.77e-115 | 329 |
| Msa0115070 | AT1G14820.2 | 68.203 | 217 | 68 | 1 | 22 | 237 | 8 | 224 | 3.72e-107 | 309 |
| Msa0115070 | AT1G14820.1 | 68.203 | 217 | 68 | 1 | 22 | 237 | 8 | 224 | 3.72e-107 | 309 |
| Msa0115070 | AT1G01630.1 | 38.140 | 215 | 128 | 2 | 24 | 237 | 45 | 255 | 3.06e-52 | 170 |
| Msa0115070 | AT1G75170.2 | 29.694 | 229 | 150 | 7 | 8 | 231 | 22 | 244 | 6.51e-17 | 78.6 |
| Msa0115070 | AT1G75170.1 | 29.694 | 229 | 150 | 7 | 8 | 231 | 22 | 244 | 6.51e-17 | 78.6 |
| Msa0115070 | AT4G08690.2 | 29.834 | 181 | 120 | 3 | 28 | 207 | 42 | 216 | 2.65e-16 | 77.0 |
| Msa0115070 | AT4G08690.1 | 29.834 | 181 | 120 | 3 | 28 | 207 | 42 | 216 | 2.65e-16 | 77.0 |
| Msa0115070 | AT4G08690.3 | 29.834 | 181 | 120 | 3 | 28 | 207 | 42 | 216 | 2.65e-16 | 77.0 |
| Msa0115070 | AT4G36640.1 | 29.204 | 226 | 151 | 5 | 10 | 231 | 21 | 241 | 3.13e-16 | 76.6 |
| Msa0115070 | AT4G36640.3 | 29.204 | 226 | 151 | 5 | 10 | 231 | 21 | 241 | 3.13e-16 | 76.6 |
| Msa0115070 | AT1G55840.1 | 25.962 | 208 | 128 | 7 | 13 | 203 | 23 | 221 | 3.13e-16 | 77.0 |
| Msa0115070 | AT1G55840.2 | 26.020 | 196 | 122 | 6 | 25 | 203 | 5 | 194 | 6.59e-16 | 75.9 |
| Msa0115070 | AT5G47730.4 | 27.670 | 206 | 129 | 6 | 13 | 204 | 23 | 222 | 1.25e-15 | 75.5 |
| Msa0115070 | AT5G47730.1 | 27.670 | 206 | 129 | 6 | 13 | 204 | 23 | 222 | 1.25e-15 | 75.5 |
| Msa0115070 | AT2G18180.1 | 28.972 | 214 | 134 | 7 | 32 | 229 | 82 | 293 | 1.53e-14 | 73.2 |
| Msa0115070 | AT2G18180.2 | 28.972 | 214 | 134 | 7 | 32 | 229 | 82 | 293 | 1.59e-14 | 73.2 |
| Msa0115070 | AT2G18180.3 | 28.837 | 215 | 135 | 7 | 31 | 229 | 10 | 222 | 3.59e-14 | 72.0 |
| Msa0115070 | AT2G18180.4 | 28.837 | 215 | 135 | 7 | 31 | 229 | 10 | 222 | 3.77e-14 | 72.0 |
| Msa0115070 | AT4G36490.1 | 27.962 | 211 | 136 | 6 | 32 | 227 | 79 | 288 | 5.47e-14 | 71.6 |
| Msa0115070 | AT5G63060.2 | 26.267 | 217 | 148 | 7 | 12 | 225 | 19 | 226 | 1.71e-13 | 68.2 |
| Msa0115070 | AT5G63060.1 | 26.267 | 217 | 148 | 7 | 12 | 225 | 54 | 261 | 3.57e-13 | 67.8 |
| Msa0115070 | AT4G39170.1 | 29.245 | 212 | 132 | 8 | 32 | 227 | 109 | 318 | 1.92e-12 | 67.0 |
| Msa0115070 | AT4G39170.2 | 29.245 | 212 | 132 | 8 | 32 | 227 | 109 | 318 | 1.95e-12 | 67.0 |
| Msa0115070 | AT1G22180.2 | 26.230 | 183 | 126 | 4 | 23 | 203 | 40 | 215 | 9.38e-12 | 64.3 |
| Msa0115070 | AT1G22180.4 | 26.230 | 183 | 126 | 4 | 23 | 203 | 40 | 215 | 9.38e-12 | 64.3 |
| Msa0115070 | AT2G16380.2 | 27.358 | 212 | 136 | 7 | 32 | 227 | 89 | 298 | 1.94e-11 | 63.9 |
| Msa0115070 | AT2G16380.1 | 27.358 | 212 | 136 | 7 | 32 | 227 | 89 | 298 | 1.94e-11 | 63.9 |
Find 71 sgRNAs with CRISPR-Local
Find 430 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATCATTTGAGTCTAATT+AGG | 0.139014 | 1_3:+33629477 | Msa0115070:three_prime_UTR |
| ATCATATCTCTAATCATATT+TGG | 0.163443 | 1_3:-33629612 | None:intergenic |
| GCTCTTCCACCATACTCTTC+TGG | 0.189899 | 1_3:-33629369 | None:intergenic |
| AGAATTTATTGTACATTTAC+TGG | 0.207444 | 1_3:+33626432 | Msa0115070:intron |
| TGAAAAGTTGATTGGGGTTC+TGG | 0.231690 | 1_3:+33627207 | Msa0115070:CDS |
| TTTCAACTATAGAGGATATT+AGG | 0.248922 | 1_3:+33629545 | Msa0115070:three_prime_UTR |
| GGGCAGAAGAAAAGAGTATT+TGG | 0.263590 | 1_3:-33622809 | None:intergenic |
| CAATCATTTGAGTCTAATTA+GGG | 0.265488 | 1_3:+33629478 | Msa0115070:three_prime_UTR |
| GTCTGTTGCTTCAGCCATTA+GGG | 0.266268 | 1_3:-33622830 | None:intergenic |
| GAGATTTGTTTCCGGCTTCC+TGG | 0.277458 | 1_3:+33627522 | Msa0115070:CDS |
| ACTTGAATATAGTGTCTTCT+TGG | 0.292765 | 1_3:+33629447 | Msa0115070:exon |
| CTCTTCCACCATACTCTTCT+GGG | 0.295772 | 1_3:-33629368 | None:intergenic |
| TTCTGAAGTTCCTGATGAAT+TGG | 0.300455 | 1_3:+33623344 | Msa0115070:CDS |
| AGTCTGTTGCTTCAGCCATT+AGG | 0.308692 | 1_3:-33622831 | None:intergenic |
| GACGCACGCGGTTTAATTAC+TGG | 0.310396 | 1_3:+33627259 | Msa0115070:CDS |
| TAGCACTTTGCTAAACGTTC+AGG | 0.335995 | 1_3:-33627463 | None:intergenic |
| AGTGTTTGGAGATTTGTTTC+CGG | 0.337909 | 1_3:+33627514 | Msa0115070:CDS |
| GACTTTAAAATAGACAAAAT+AGG | 0.394721 | 1_3:-33629647 | None:intergenic |
| TTTCTAGTTTCCAATTCATC+AGG | 0.401334 | 1_3:-33623354 | None:intergenic |
| GATTGGGGTTCTGGATCTGC+AGG | 0.409166 | 1_3:+33627216 | Msa0115070:CDS |
| TTATAGATCATAAAGGGGTT+AGG | 0.412020 | 1_3:-33629520 | None:intergenic |
| TGTTTGTCCAATGGCAGAAA+TGG | 0.413217 | 1_3:+33623286 | Msa0115070:CDS |
| TGTTACATATTCTATTCTAC+TGG | 0.413810 | 1_3:+33629585 | Msa0115070:three_prime_UTR |
| TAGGAAATGAAAAGTTGATT+GGG | 0.414103 | 1_3:+33627200 | Msa0115070:CDS |
| TTTCTTGTGTTGCCTTGTCC+AGG | 0.415079 | 1_3:-33627540 | None:intergenic |
| GACATTCTCCCAGAAGAGTA+TGG | 0.427276 | 1_3:+33629360 | Msa0115070:CDS |
| AGGTGAATAAGAAGAATAAG+AGG | 0.429626 | 1_3:-33622728 | None:intergenic |
| GGACTAGTATGGTGCCTAAT+GGG | 0.443267 | 1_3:+33623310 | Msa0115070:CDS |
| AGGACTAGTATGGTGCCTAA+TGG | 0.443355 | 1_3:+33623309 | Msa0115070:CDS |
| GCAGAAATGGAGGACTAGTA+TGG | 0.444272 | 1_3:+33623299 | Msa0115070:CDS |
| GTGGTTTCACTTCAACGTCT+TGG | 0.449032 | 1_3:-33629407 | None:intergenic |
| CTTGAATTGAATCTGATCCT+TGG | 0.458306 | 1_3:-33623448 | None:intergenic |
| GAATCTGAAATGAACCCATT+AGG | 0.458321 | 1_3:-33623324 | None:intergenic |
| CTATAAAATTTCAACTATAG+AGG | 0.462208 | 1_3:+33629537 | Msa0115070:three_prime_UTR |
| GAAGTGAAACCACCGGAAAA+CGG | 0.468425 | 1_3:+33629417 | Msa0115070:CDS |
| GTAGGAAATGAAAAGTTGAT+TGG | 0.469041 | 1_3:+33627199 | Msa0115070:CDS |
| TGTTGCCTTGTCCAGGAAGC+CGG | 0.471058 | 1_3:-33627533 | None:intergenic |
| AATTGAATCTGATCCTTGGA+AGG | 0.474850 | 1_3:-33623444 | None:intergenic |
| GGACAAGGCAACACAAGAAA+AGG | 0.493431 | 1_3:+33627543 | Msa0115070:CDS |
| TAGTCCTCCATTTCTGCCAT+TGG | 0.499774 | 1_3:-33623293 | None:intergenic |
| AAGGGAAATGTCTACTAGCT+TGG | 0.503703 | 1_3:-33623425 | None:intergenic |
| AGCACTTTGCTAAACGTTCA+GGG | 0.506911 | 1_3:-33627462 | None:intergenic |
| AAACCTTGGTTCTTCTACAC+AGG | 0.507836 | 1_3:+33622888 | Msa0115070:CDS |
| CAACAATTACGTTGACATAA+CGG | 0.510272 | 1_3:-33622668 | None:intergenic |
| TAGTAGACATTTCCCTTCCA+AGG | 0.515787 | 1_3:+33623431 | Msa0115070:CDS |
| TTTCAGTGCTTTCAAGGGAA+GGG | 0.525192 | 1_3:+33627174 | Msa0115070:intron |
| AAGAAAAGAGTATTTGGCAG+AGG | 0.536815 | 1_3:-33622803 | None:intergenic |
| TGTTTCCGGCTTCCTGGACA+AGG | 0.546088 | 1_3:+33627528 | Msa0115070:CDS |
| TTCACTTCAACGTCTTGGAT+AGG | 0.562986 | 1_3:-33629402 | None:intergenic |
| GCTTTCAAGGGAAGGGAGGT+AGG | 0.565134 | 1_3:+33627181 | Msa0115070:CDS |
| AAGTTGTTCGTAAGTGATGT+TGG | 0.581331 | 1_3:+33629333 | Msa0115070:CDS |
| ATTGAATCTGATCCTTGGAA+GGG | 0.584570 | 1_3:-33623443 | None:intergenic |
| CAGCAAAGATGTTTGTCCAA+TGG | 0.589632 | 1_3:+33623277 | Msa0115070:CDS |
| AGGAAATGAAAAGTTGATTG+GGG | 0.598659 | 1_3:+33627201 | Msa0115070:CDS |
| TTGTCCAATGGCAGAAATGG+AGG | 0.601671 | 1_3:+33623289 | Msa0115070:CDS |
| ATCATTTGAGTCTAATTAGG+GGG | 0.606848 | 1_3:+33629480 | Msa0115070:three_prime_UTR |
| ATTGGGGTTCTGGATCTGCA+GGG | 0.609006 | 1_3:+33627217 | Msa0115070:CDS |
| TGGGTTTCACTATTTGAGAG+TGG | 0.609032 | 1_3:-33622771 | None:intergenic |
| TCTGTTGCTTCAGCCATTAG+GGG | 0.615865 | 1_3:-33622829 | None:intergenic |
| CTAGCTTGGACAATCATCAC+AGG | 0.616426 | 1_3:-33623411 | None:intergenic |
| CAGTGCTTTCAAGGGAAGGG+AGG | 0.627355 | 1_3:+33627177 | Msa0115070:intron |
| AGACGTTGAAGTGAAACCAC+CGG | 0.634647 | 1_3:+33629410 | Msa0115070:CDS |
| TTACCTGTGTAGAAGAACCA+AGG | 0.639876 | 1_3:-33622891 | None:intergenic |
| ATGGGGACCCTACACTGATG+AGG | 0.642360 | 1_3:+33623220 | Msa0115070:CDS |
| TACTGGACAAGACAATTGCG+AGG | 0.666147 | 1_3:+33626449 | Msa0115070:CDS |
| AATCATTTGAGTCTAATTAG+GGG | 0.668712 | 1_3:+33629479 | Msa0115070:three_prime_UTR |
| CAAGAACATGTGTTGAAGAG+AGG | 0.675450 | 1_3:-33622748 | None:intergenic |
| GATTGTAATTATAAGCAATG+AGG | 0.676360 | 1_3:+33629302 | Msa0115070:intron |
| ATTCTCCCAGAAGAGTATGG+TGG | 0.682560 | 1_3:+33629363 | Msa0115070:CDS |
| AAGAGGTACAAGAAAGCACG+TGG | 0.708208 | 1_3:-33622711 | None:intergenic |
| AGGTACAAGAAAGCACGTGG+AGG | 0.747331 | 1_3:-33622708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATAAAAAAAAAATA+TGG | - | chr1_3:33623182-33623201 | None:intergenic | 0.0% |
| !!! | ATATTTGAACTTTTTAATTT+AGG | + | chr1_3:33626670-33626689 | Msa0115070:intron | 10.0% |
| !! | AAAATCATATTATAATCAAA+TGG | - | chr1_3:33628531-33628550 | None:intergenic | 10.0% |
| !!! | TTGAAACTTTTAAAATATAA+GGG | + | chr1_3:33628917-33628936 | Msa0115070:intron | 10.0% |
| !! | TAAAAACTAAAATAAACATA+AGG | + | chr1_3:33628947-33628966 | Msa0115070:intron | 10.0% |
| !! | AAAAACTAAAATAAACATAA+GGG | + | chr1_3:33628948-33628967 | Msa0115070:intron | 10.0% |
| !!! | AAAAATAAACACAAAGTATT+TGG | - | chr1_3:33623506-33623525 | None:intergenic | 15.0% |
| !!! | TAATTTGATAATGTCAAAAT+TGG | - | chr1_3:33624341-33624360 | None:intergenic | 15.0% |
| !!! | TTTTAATGTTTGATATAATG+AGG | + | chr1_3:33624996-33625015 | Msa0115070:intron | 15.0% |
| !!! | TATCTAAAAAATTGGATTTT+GGG | - | chr1_3:33625663-33625682 | None:intergenic | 15.0% |
| !!! | TTATCTAAAAAATTGGATTT+TGG | - | chr1_3:33625664-33625683 | None:intergenic | 15.0% |
| !! | AACAAATAATAGAAAACAAA+TGG | - | chr1_3:33626162-33626181 | None:intergenic | 15.0% |
| !! | AAAACAAGTTATGAAATAAT+TGG | - | chr1_3:33627403-33627422 | None:intergenic | 15.0% |
| !!! | TAAGGTTTTTTTGAATATAT+AGG | + | chr1_3:33628189-33628208 | Msa0115070:intron | 15.0% |
| !! | TTGATACTTTACTTTATATT+AGG | - | chr1_3:33628316-33628335 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr1_3:33628596-33628615 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr1_3:33628597-33628616 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | - | chr1_3:33628627-33628646 | None:intergenic | 15.0% |
| !!! | ATATTTTAAAAGTTTCAAGT+TGG | - | chr1_3:33628915-33628934 | None:intergenic | 15.0% |
| !!! | CTTGAAACTTTTAAAATATA+AGG | + | chr1_3:33628916-33628935 | Msa0115070:intron | 15.0% |
| !!! | GTTTATTTTAGTTTTTAAGT+TGG | - | chr1_3:33628944-33628963 | None:intergenic | 15.0% |
| !! | TCATTTGAATAAAAAAACTA+AGG | - | chr1_3:33628992-33629011 | None:intergenic | 15.0% |
| !!! | AAATTTTATAGATCATAAAG+GGG | - | chr1_3:33629528-33629547 | None:intergenic | 15.0% |
| !!! | GAAATTTTATAGATCATAAA+GGG | - | chr1_3:33629529-33629548 | None:intergenic | 15.0% |
| !!! | TGAAATTTTATAGATCATAA+AGG | - | chr1_3:33629530-33629549 | None:intergenic | 15.0% |
| !! | TAATTCACTAACTTAGTTTA+TGG | + | chr1_3:33622944-33622963 | Msa0115070:intron | 20.0% |
| !!! | ATATTAAATTTCCTTTTTGC+AGG | + | chr1_3:33623194-33623213 | Msa0115070:intron | 20.0% |
| !!! | TATTAAATTTCCTTTTTGCA+GGG | + | chr1_3:33623195-33623214 | Msa0115070:intron | 20.0% |
| !! | TGGAAAAAAAACAAATACAA+AGG | + | chr1_3:33623717-33623736 | Msa0115070:intron | 20.0% |
| !! | GGAAAAAAAACAAATACAAA+GGG | + | chr1_3:33623718-33623737 | Msa0115070:intron | 20.0% |
| !! | GAAAAAAAACAAATACAAAG+GGG | + | chr1_3:33623719-33623738 | Msa0115070:intron | 20.0% |
| !! | ATATAAAAGTAAAACTTCCA+TGG | + | chr1_3:33623845-33623864 | Msa0115070:intron | 20.0% |
| !!! | ATTTAATTTATGTAACCAGT+TGG | + | chr1_3:33624000-33624019 | Msa0115070:intron | 20.0% |
| !!! | TAAACAATTTTTGGTTATTG+AGG | - | chr1_3:33624129-33624148 | None:intergenic | 20.0% |
| !!! | TGACTTATCTAAACAATTTT+TGG | - | chr1_3:33624138-33624157 | None:intergenic | 20.0% |
| !!! | TAACTTTAAAGTATTATAGC+TGG | + | chr1_3:33624556-33624575 | Msa0115070:intron | 20.0% |
| !! | AACCATGAATATGAAATTAT+TGG | - | chr1_3:33624588-33624607 | None:intergenic | 20.0% |
| !! | AACAACCATTCTTAAAATTT+AGG | - | chr1_3:33624845-33624864 | None:intergenic | 20.0% |
| !!! | ATTTTAAGAATGGTTGTTTA+AGG | + | chr1_3:33624847-33624866 | Msa0115070:intron | 20.0% |
| !!! | TTTTAAGAATGGTTGTTTAA+GGG | + | chr1_3:33624848-33624867 | Msa0115070:intron | 20.0% |
| !! | GAAATGATAAAATGTACAAA+CGG | - | chr1_3:33624912-33624931 | None:intergenic | 20.0% |
| !!! | TTTCTAGTTTTTTATTTTCG+GGG | - | chr1_3:33624961-33624980 | None:intergenic | 20.0% |
| !!! | CTTTCTAGTTTTTTATTTTC+GGG | - | chr1_3:33624962-33624981 | None:intergenic | 20.0% |
| !!! | CCTTTCTAGTTTTTTATTTT+CGG | - | chr1_3:33624963-33624982 | None:intergenic | 20.0% |
| !! | ATAAACTCTACTATAGTATT+AGG | + | chr1_3:33625273-33625292 | Msa0115070:intron | 20.0% |
| !! | CAACTTTGTAAGAATAATTT+GGG | - | chr1_3:33625312-33625331 | None:intergenic | 20.0% |
| !!! | AAATTGGTAAATTTGTTAGT+TGG | + | chr1_3:33625444-33625463 | Msa0115070:intron | 20.0% |
| !! | TTGGTCACATAAATTTAAAT+TGG | - | chr1_3:33625570-33625589 | None:intergenic | 20.0% |
| !!! | ATCTAAAAAATTGGATTTTG+GGG | - | chr1_3:33625662-33625681 | None:intergenic | 20.0% |
| !! | AAGTGACTTATCTAAAAAAT+TGG | - | chr1_3:33625671-33625690 | None:intergenic | 20.0% |
| !!! | AGTTGTTTAGTTCAATTTTT+TGG | + | chr1_3:33625780-33625799 | Msa0115070:intron | 20.0% |
| !!! | TTTAGTTCAATTTTTTGGAA+GGG | + | chr1_3:33625785-33625804 | Msa0115070:intron | 20.0% |
| !! | AAATTAGATCATGTCAAAAT+AGG | - | chr1_3:33625966-33625985 | None:intergenic | 20.0% |
| !!! | ATCTTTTGCTTTCAAATTTA+CGG | + | chr1_3:33626182-33626201 | Msa0115070:intron | 20.0% |
| !! | AGAATTTATTGTACATTTAC+TGG | + | chr1_3:33626432-33626451 | Msa0115070:intron | 20.0% |
| !! | CTTTAAACAATAGATAAGAT+AGG | - | chr1_3:33626508-33626527 | None:intergenic | 20.0% |
| !! | CTATCTTATCTATTGTTTAA+AGG | + | chr1_3:33626506-33626525 | Msa0115070:intron | 20.0% |
| !!! | CTTTTTAATTTAGGATAATG+AGG | + | chr1_3:33626679-33626698 | Msa0115070:intron | 20.0% |
| !! | TATAAGCTTGTATAATTGTT+TGG | - | chr1_3:33626807-33626826 | None:intergenic | 20.0% |
| !! | GAAGAAATTGTTAGTAATAA+TGG | + | chr1_3:33627059-33627078 | Msa0115070:intron | 20.0% |
| !! | ACTAAATTACTAATTCAATC+TGG | - | chr1_3:33627746-33627765 | None:intergenic | 20.0% |
| !! | TCGAATAATGATATTAACTA+AGG | - | chr1_3:33627853-33627872 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr1_3:33628600-33628619 | Msa0115070:intron | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | - | chr1_3:33628628-33628647 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr1_3:33628629-33628648 | Msa0115070:intron | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | - | chr1_3:33628888-33628907 | None:intergenic | 20.0% |
| !!! | CTGATTTTCTAAATAAGTTA+AGG | - | chr1_3:33628770-33628789 | None:intergenic | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | + | chr1_3:33628888-33628907 | Msa0115070:intron | 20.0% |
| !!! | TACTTTGAAAGTAACATATA+CGG | + | chr1_3:33629164-33629183 | Msa0115070:intron | 20.0% |
| !! | CTATAAAATTTCAACTATAG+AGG | + | chr1_3:33629537-33629556 | Msa0115070:three_prime_UTR | 20.0% |
| !! | ATCATATCTCTAATCATATT+TGG | - | chr1_3:33629615-33629634 | None:intergenic | 20.0% |
| !!! | GACTTTAAAATAGACAAAAT+AGG | - | chr1_3:33629650-33629669 | None:intergenic | 20.0% |
| !! | AACTAGAAAGATCTTTTTAC+AGG | + | chr1_3:33623368-33623387 | Msa0115070:CDS | 25.0% |
| !! | ACTAGAAAGATCTTTTTACA+GGG | + | chr1_3:33623369-33623388 | Msa0115070:CDS | 25.0% |
| ! | TCTTAGTATAGAGATATTTG+TGG | + | chr1_3:33623569-33623588 | Msa0115070:intron | 25.0% |
| ! | ATCACACTATAATTACACTT+TGG | - | chr1_3:33623617-33623636 | None:intergenic | 25.0% |
| !!! | ACCTAGATTCAATTTTTAAG+GGG | - | chr1_3:33623783-33623802 | None:intergenic | 25.0% |
| !! | CACCTAGATTCAATTTTTAA+GGG | - | chr1_3:33623784-33623803 | None:intergenic | 25.0% |
| !! | ACACCTAGATTCAATTTTTA+AGG | - | chr1_3:33623785-33623804 | None:intergenic | 25.0% |
| ! | TTGGACAAAATACATCAATT+TGG | - | chr1_3:33623939-33623958 | None:intergenic | 25.0% |
| ! | AGGTACAGTTTAATTAATTG+AGG | + | chr1_3:33624078-33624097 | Msa0115070:intron | 25.0% |
| ! | TTTAGATAAGTCACTTATCA+AGG | + | chr1_3:33624145-33624164 | Msa0115070:intron | 25.0% |
| ! | AATTAAATAGAATGAAGTGC+TGG | + | chr1_3:33624367-33624386 | Msa0115070:intron | 25.0% |
| !! | ATTAAATAGAATGAAGTGCT+GGG | + | chr1_3:33624368-33624387 | Msa0115070:intron | 25.0% |
| ! | CCATATCATTTGAAAGTAAA+GGG | - | chr1_3:33624500-33624519 | None:intergenic | 25.0% |
| ! | ACCATATCATTTGAAAGTAA+AGG | - | chr1_3:33624501-33624520 | None:intergenic | 25.0% |
| ! | CTCCAATAATTTCATATTCA+TGG | + | chr1_3:33624583-33624602 | Msa0115070:intron | 25.0% |
| ! | GCAACTTCTATATGAAATAT+TGG | + | chr1_3:33624673-33624692 | Msa0115070:intron | 25.0% |
| ! | CTGAAAATGTGTTTATAAGT+GGG | + | chr1_3:33624770-33624789 | Msa0115070:intron | 25.0% |
| !! | CCATTCTTAAAATTTAGGTT+AGG | - | chr1_3:33624840-33624859 | None:intergenic | 25.0% |
| !!! | CCTAACCTAAATTTTAAGAA+TGG | + | chr1_3:33624837-33624856 | Msa0115070:intron | 25.0% |
| ! | CCGAAAATAAAAAACTAGAA+AGG | + | chr1_3:33624960-33624979 | Msa0115070:intron | 25.0% |
| !! | GATTCTGGTTAATAATTTGA+AGG | + | chr1_3:33625030-33625049 | Msa0115070:intron | 25.0% |
| !!! | TAATGACTTCAACTAGTTTT+TGG | - | chr1_3:33625073-33625092 | None:intergenic | 25.0% |
| ! | AAACTAGTTGAAGTCATTAA+TGG | + | chr1_3:33625074-33625093 | Msa0115070:intron | 25.0% |
| ! | AACTAGTTGAAGTCATTAAT+GGG | + | chr1_3:33625075-33625094 | Msa0115070:intron | 25.0% |
| ! | CCAACTTTGTAAGAATAATT+TGG | - | chr1_3:33625313-33625332 | None:intergenic | 25.0% |
| ! | CCAAATTATTCTTACAAAGT+TGG | + | chr1_3:33625310-33625329 | Msa0115070:intron | 25.0% |
| ! | CCTGAAAATATGTTTAAAAG+TGG | - | chr1_3:33625360-33625379 | None:intergenic | 25.0% |
| !!! | CCACTTTTAAACATATTTTC+AGG | + | chr1_3:33625357-33625376 | Msa0115070:intron | 25.0% |
| !!! | TTTGATGTATTTTTTCCAAG+CGG | + | chr1_3:33625510-33625529 | Msa0115070:intron | 25.0% |
| ! | CTACAATAATATTTGCCTAA+TGG | - | chr1_3:33625539-33625558 | None:intergenic | 25.0% |
| !!! | GTTTAGTTCAATTTTTTGGA+AGG | + | chr1_3:33625784-33625803 | Msa0115070:intron | 25.0% |
| ! | ATCATAATATTGTACCAAAG+GGG | - | chr1_3:33625926-33625945 | None:intergenic | 25.0% |
| ! | GATCATAATATTGTACCAAA+GGG | - | chr1_3:33625927-33625946 | None:intergenic | 25.0% |
| ! | TGATCATAATATTGTACCAA+AGG | - | chr1_3:33625928-33625947 | None:intergenic | 25.0% |
| ! | ATGTTGTTATATGAGAAGTT+AGG | + | chr1_3:33625997-33626016 | Msa0115070:intron | 25.0% |
| ! | AGGAAAATGAAACTATCAAA+TGG | + | chr1_3:33626017-33626036 | Msa0115070:intron | 25.0% |
| ! | GAGATAACTAAACAATCTTT+AGG | - | chr1_3:33626121-33626140 | None:intergenic | 25.0% |
| ! | CATATATTCAGAAGATAATC+TGG | + | chr1_3:33626236-33626255 | Msa0115070:intron | 25.0% |
| ! | AAAATTGAAATTCTCTGTCT+TGG | + | chr1_3:33626339-33626358 | Msa0115070:intron | 25.0% |
| ! | ATCTATTGTTTAAAGGAACT+TGG | + | chr1_3:33626513-33626532 | Msa0115070:intron | 25.0% |
| ! | TCTATTGTTTAAAGGAACTT+GGG | + | chr1_3:33626514-33626533 | Msa0115070:intron | 25.0% |
| ! | ACACTTCAAATTCAATCAAA+TGG | - | chr1_3:33626595-33626614 | None:intergenic | 25.0% |
| !! | TTGATTGAATTTGAAGTGTT+TGG | + | chr1_3:33626596-33626615 | Msa0115070:intron | 25.0% |
| ! | TTACGTACTGTTATATTTCA+TGG | + | chr1_3:33626912-33626931 | Msa0115070:intron | 25.0% |
| ! | TACGTACTGTTATATTTCAT+GGG | + | chr1_3:33626913-33626932 | Msa0115070:intron | 25.0% |
| !! | TAGGAAATGAAAAGTTGATT+GGG | + | chr1_3:33627200-33627219 | Msa0115070:CDS | 25.0% |
| !! | TACTGGATTTCAATTTTTAC+AGG | + | chr1_3:33627276-33627295 | Msa0115070:CDS | 25.0% |
| ! | ACAAGTTATGAAATAATTGG+TGG | - | chr1_3:33627400-33627419 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTGATAAA+CGG | - | chr1_3:33627661-33627680 | None:intergenic | 25.0% |
| ! | AAATGTGATGCAGAATATAT+TGG | + | chr1_3:33627784-33627803 | Msa0115070:intron | 25.0% |
| ! | AATGTGATGCAGAATATATT+GGG | + | chr1_3:33627785-33627804 | Msa0115070:intron | 25.0% |
| ! | TTCAATCTGTTAATTTCCAT+AGG | + | chr1_3:33627821-33627840 | Msa0115070:intron | 25.0% |
| ! | TTCGATAGTATACAGTAATA+TGG | + | chr1_3:33627868-33627887 | Msa0115070:intron | 25.0% |
| !!! | GTTTACTTTTATGTCAAACA+TGG | + | chr1_3:33627924-33627943 | Msa0115070:intron | 25.0% |
| !!! | AAGCTATTGCAATTAGTTTT+TGG | + | chr1_3:33628552-33628571 | Msa0115070:intron | 25.0% |
| !!! | CTTGAAACTTTTAAAACGTA+AGG | - | chr1_3:33628887-33628906 | None:intergenic | 25.0% |
| !!! | ACGTTTTAAAAGTTTCAAGT+TGG | + | chr1_3:33628658-33628677 | Msa0115070:intron | 25.0% |
| ! | AATCTTTAAACGTTAAGTGA+CGG | - | chr1_3:33628722-33628741 | None:intergenic | 25.0% |
| ! | TCACTTAACGTTTAAAGATT+TGG | + | chr1_3:33628722-33628741 | Msa0115070:intron | 25.0% |
| ! | CACTTAACGTTTAAAGATTT+GGG | + | chr1_3:33628723-33628742 | Msa0115070:intron | 25.0% |
| !!! | ACGTTTTAAAAGTTTCAAGT+TGG | - | chr1_3:33628658-33628677 | None:intergenic | 25.0% |
| !!! | CTTGAAACTTTTAAAACGTA+AGG | + | chr1_3:33628887-33628906 | Msa0115070:intron | 25.0% |
| !!! | CTATGTAAAACTTGCTATAT+TGG | + | chr1_3:33629205-33629224 | Msa0115070:intron | 25.0% |
| ! | GATTGTAATTATAAGCAATG+AGG | + | chr1_3:33629302-33629321 | Msa0115070:intron | 25.0% |
| ! | ACAATCATTTGAGTCTAATT+AGG | + | chr1_3:33629477-33629496 | Msa0115070:three_prime_UTR | 25.0% |
| ! | CAATCATTTGAGTCTAATTA+GGG | + | chr1_3:33629478-33629497 | Msa0115070:three_prime_UTR | 25.0% |
| ! | AATCATTTGAGTCTAATTAG+GGG | + | chr1_3:33629479-33629498 | Msa0115070:three_prime_UTR | 25.0% |
| ! | TTTCAACTATAGAGGATATT+AGG | + | chr1_3:33629545-33629564 | Msa0115070:three_prime_UTR | 25.0% |
| ! | TGTTACATATTCTATTCTAC+TGG | + | chr1_3:33629585-33629604 | Msa0115070:three_prime_UTR | 25.0% |
| CAACAATTACGTTGACATAA+CGG | - | chr1_3:33622671-33622690 | None:intergenic | 30.0% | |
| AGGTGAATAAGAAGAATAAG+AGG | - | chr1_3:33622731-33622750 | None:intergenic | 30.0% | |
| AAAAAGTCTGTTGAAAACCT+TGG | + | chr1_3:33622874-33622893 | Msa0115070:CDS | 30.0% | |
| ATTCACTACTATTGACAAGA+CGG | + | chr1_3:33623082-33623101 | Msa0115070:intron | 30.0% | |
| TGATATGACGACTTAAATCA+TGG | + | chr1_3:33623154-33623173 | Msa0115070:intron | 30.0% | |
| !! | TTTCTAGTTTCCAATTCATC+AGG | - | chr1_3:33623357-33623376 | None:intergenic | 30.0% |
| AATATCTCTATACTAAGACG+TGG | - | chr1_3:33623567-33623586 | None:intergenic | 30.0% | |
| AACAAATACAAAGGGGAAAT+CGG | + | chr1_3:33623726-33623745 | Msa0115070:intron | 30.0% | |
| ACCCCTTAAAAATTGAATCT+AGG | + | chr1_3:33623779-33623798 | Msa0115070:intron | 30.0% | |
| ! | ATTGATGTATTTTGTCCAAG+TGG | + | chr1_3:33623940-33623959 | Msa0115070:intron | 30.0% |
| ! | TTGATGTATTTTGTCCAAGT+GGG | + | chr1_3:33623941-33623960 | Msa0115070:intron | 30.0% |
| ! | CTAGACTAATCTTTTCCTAA+TGG | - | chr1_3:33623969-33623988 | None:intergenic | 30.0% |
| ATGTTCTTCTACATTGTGTT+TGG | + | chr1_3:33624177-33624196 | Msa0115070:intron | 30.0% | |
| !!! | GAAATTGAGTTGATTTTCTC+AGG | - | chr1_3:33624275-33624294 | None:intergenic | 30.0% |
| ! | ATACTTGCACTAGAATTTTG+TGG | + | chr1_3:33624400-33624419 | Msa0115070:intron | 30.0% |
| CCCTTTACTTTCAAATGATA+TGG | + | chr1_3:33624497-33624516 | Msa0115070:intron | 30.0% | |
| !!! | TGCTCTAGTTCTTTTCAATT+AGG | + | chr1_3:33624626-33624645 | Msa0115070:intron | 30.0% |
| ! | CCACTTATAAACACATTTTC+AGG | - | chr1_3:33624772-33624791 | None:intergenic | 30.0% |
| CCTGAAAATGTGTTTATAAG+TGG | + | chr1_3:33624769-33624788 | Msa0115070:intron | 30.0% | |
| !!! | TAGTTTTTTATTTTCGGGGT+AGG | - | chr1_3:33624957-33624976 | None:intergenic | 30.0% |
| TTTCAAGCACATTCTATGAT+CGG | + | chr1_3:33625195-33625214 | Msa0115070:intron | 30.0% | |
| AGAGTCTATTAGACTTACTT+GGG | - | chr1_3:33625236-33625255 | None:intergenic | 30.0% | |
| AGAGTTTATCAATCATCTGT+TGG | - | chr1_3:33625262-33625281 | None:intergenic | 30.0% | |
| AGGTCATATCTTATTCAATG+TGG | + | chr1_3:33625377-33625396 | Msa0115070:intron | 30.0% | |
| !!! | TTGATGTATTTTTTCCAAGC+GGG | + | chr1_3:33625511-33625530 | Msa0115070:intron | 30.0% |
| GCAAATATTATTGTAGAGAC+TGG | + | chr1_3:33625543-33625562 | Msa0115070:intron | 30.0% | |
| !! | TGTCTTTTTCTTTTGCTATC+TGG | + | chr1_3:33625615-33625634 | Msa0115070:intron | 30.0% |
| TATCAAATGGAATGAAGTGT+TGG | + | chr1_3:33626030-33626049 | Msa0115070:intron | 30.0% | |
| ! | ATCAAATGGAATGAAGTGTT+GGG | + | chr1_3:33626031-33626050 | Msa0115070:intron | 30.0% |
| AAAATTCCAATGCAAGTATC+TGG | - | chr1_3:33626062-33626081 | None:intergenic | 30.0% | |
| ! | ATACTTGCATTGGAATTTTG+TGG | + | chr1_3:33626063-33626082 | Msa0115070:intron | 30.0% |
| CTCTCTTTCATTTGATTGAT+AGG | - | chr1_3:33626289-33626308 | None:intergenic | 30.0% | |
| CTTGTGTGGTAAAAAAATAG+CGG | + | chr1_3:33626538-33626557 | Msa0115070:intron | 30.0% | |
| ! | GAAGTGTTTGGTAAAATTAG+CGG | + | chr1_3:33626608-33626627 | Msa0115070:intron | 30.0% |
| TCCTCTATAAACTACAGATT+TGG | + | chr1_3:33626839-33626858 | Msa0115070:intron | 30.0% | |
| ! | ATTGCAATGCTTTTGTTGAA+TGG | - | chr1_3:33626884-33626903 | None:intergenic | 30.0% |
| CAAAAATGAATGCATAGGAA+GGG | - | chr1_3:33626959-33626978 | None:intergenic | 30.0% | |
| TCAAAAATGAATGCATAGGA+AGG | - | chr1_3:33626960-33626979 | None:intergenic | 30.0% | |
| TCTGTCAAAAATGAATGCAT+AGG | - | chr1_3:33626964-33626983 | None:intergenic | 30.0% | |
| !! | GCATTCATTTTTGACAGAAA+TGG | + | chr1_3:33626966-33626985 | Msa0115070:intron | 30.0% |
| AAAAAAGACACTAGTTGCAT+AGG | - | chr1_3:33627007-33627026 | None:intergenic | 30.0% | |
| !!! | TATGCAACTAGTGTCTTTTT+TGG | + | chr1_3:33627006-33627025 | Msa0115070:intron | 30.0% |
| !!! | ATGCAACTAGTGTCTTTTTT+GGG | + | chr1_3:33627007-33627026 | Msa0115070:intron | 30.0% |
| ACACCTTAGAGTGATTAATT+AGG | + | chr1_3:33627037-33627056 | Msa0115070:intron | 30.0% | |
| CTTCCTAATTAATCACTCTA+AGG | - | chr1_3:33627043-33627062 | None:intergenic | 30.0% | |
| TGATAAAAGAGAGTAGAAGT+TGG | - | chr1_3:33627118-33627137 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTCAGTGCTTTCA+AGG | + | chr1_3:33627168-33627187 | Msa0115070:intron | 30.0% |
| ! | TTTCTTTTCAGTGCTTTCAA+GGG | + | chr1_3:33627169-33627188 | Msa0115070:intron | 30.0% |
| ! | GTAGGAAATGAAAAGTTGAT+TGG | + | chr1_3:33627199-33627218 | Msa0115070:CDS | 30.0% |
| ! | AGGAAATGAAAAGTTGATTG+GGG | + | chr1_3:33627201-33627220 | Msa0115070:CDS | 30.0% |
| ! | GCTATATTTTACATATGCCA+TGG | + | chr1_3:33627482-33627501 | Msa0115070:CDS | 30.0% |
| !! | ACTGATTTTCAGCTTAAGAT+TGG | - | chr1_3:33627577-33627596 | None:intergenic | 30.0% |
| !! | ATGCATCACATATTTTTCAG+TGG | + | chr1_3:33627634-33627653 | Msa0115070:intron | 30.0% |
| AAAATATGCGACTGATAAAC+GGG | - | chr1_3:33627660-33627679 | None:intergenic | 30.0% | |
| !! | CACATTTTGTTTGCTTTGAT+GGG | - | chr1_3:33627771-33627790 | None:intergenic | 30.0% |
| !! | TCACATTTTGTTTGCTTTGA+TGG | - | chr1_3:33627772-33627791 | None:intergenic | 30.0% |
| ACAACACTTTGTACTAGAAA+AGG | - | chr1_3:33628088-33628107 | None:intergenic | 30.0% | |
| ! | ACTGTAGGAAACTTCTTTTA+AGG | + | chr1_3:33628171-33628190 | Msa0115070:intron | 30.0% |
| AACCATAAAAGTTTCTTCTG+CGG | + | chr1_3:33628221-33628240 | Msa0115070:intron | 30.0% | |
| CTTCTATATGCATGCATTAA+TGG | - | chr1_3:33628411-33628430 | None:intergenic | 30.0% | |
| ! | TATAGTCTCAGATTTGCTTA+AGG | - | chr1_3:33628451-33628470 | None:intergenic | 30.0% |
| TCTATACTAAGCAGCTAAAA+AGG | - | chr1_3:33629023-33629042 | None:intergenic | 30.0% | |
| AATCCTAAATCATGCACAAT+TGG | - | chr1_3:33629057-33629076 | None:intergenic | 30.0% | |
| TTGAAAGTAACATATACGGT+TGG | + | chr1_3:33629168-33629187 | Msa0115070:intron | 30.0% | |
| !! | TGTAAAACTTGCTATATTGG+TGG | + | chr1_3:33629208-33629227 | Msa0115070:intron | 30.0% |
| ACTTGAATATAGTGTCTTCT+TGG | + | chr1_3:33629447-33629466 | Msa0115070:exon | 30.0% | |
| ATCATTTGAGTCTAATTAGG+GGG | + | chr1_3:33629480-33629499 | Msa0115070:three_prime_UTR | 30.0% | |
| TTATAGATCATAAAGGGGTT+AGG | - | chr1_3:33629523-33629542 | None:intergenic | 30.0% | |
| !! | AAGAAAAGAGTATTTGGCAG+AGG | - | chr1_3:33622806-33622825 | None:intergenic | 35.0% |
| !!! | TTCAACAGACTTTTTCAGCT+TGG | - | chr1_3:33622869-33622888 | None:intergenic | 35.0% |
| GAAGAAAAGAAAGAAGAGAC+TGG | - | chr1_3:33622918-33622937 | None:intergenic | 35.0% | |
| ! | TCTGTCATATTTCTCTGAGA+CGG | - | chr1_3:33623030-33623049 | None:intergenic | 35.0% |
| TTCACTACTATTGACAAGAC+GGG | + | chr1_3:33623083-33623102 | Msa0115070:intron | 35.0% | |
| ! | ATTTCCTTTTTGCAGGGTTA+TGG | + | chr1_3:33623201-33623220 | Msa0115070:intron | 35.0% |
| ! | TTTCCTTTTTGCAGGGTTAT+GGG | + | chr1_3:33623202-33623221 | Msa0115070:intron | 35.0% |
| TCAAAAACCTCATCAGTGTA+GGG | - | chr1_3:33623230-33623249 | None:intergenic | 35.0% | |
| ATCAAAAACCTCATCAGTGT+AGG | - | chr1_3:33623231-33623250 | None:intergenic | 35.0% | |
| !! | TGATGAGGTTTTTGATTGCT+CGG | + | chr1_3:33623235-33623254 | Msa0115070:CDS | 35.0% |
| ! | GAATCTGAAATGAACCCATT+AGG | - | chr1_3:33623327-33623346 | None:intergenic | 35.0% |
| !! | TTCTGAAGTTCCTGATGAAT+TGG | + | chr1_3:33623344-33623363 | Msa0115070:CDS | 35.0% |
| ! | CTTTTTACAGGGTTTGTCTA+AGG | + | chr1_3:33623380-33623399 | Msa0115070:CDS | 35.0% |
| ATTGAATCTGATCCTTGGAA+GGG | - | chr1_3:33623446-33623465 | None:intergenic | 35.0% | |
| AATTGAATCTGATCCTTGGA+AGG | - | chr1_3:33623447-33623466 | None:intergenic | 35.0% | |
| CTTGAATTGAATCTGATCCT+TGG | - | chr1_3:33623451-33623470 | None:intergenic | 35.0% | |
| CAAGATGCACTAATAAGCTT+GGG | + | chr1_3:33623694-33623713 | Msa0115070:intron | 35.0% | |
| CAAAATGCTAGTATTAGCCA+TGG | - | chr1_3:33623865-33623884 | None:intergenic | 35.0% | |
| ! | TGATGTATTTTGTCCAAGTG+GGG | + | chr1_3:33623942-33623961 | Msa0115070:intron | 35.0% |
| ATTCCACATGGCAAAAGAAA+AGG | - | chr1_3:33624052-33624071 | None:intergenic | 35.0% | |
| TTGCCATGTGGAATTTATTG+AGG | + | chr1_3:33624058-33624077 | Msa0115070:intron | 35.0% | |
| GTACCTCAATAAATTCCACA+TGG | - | chr1_3:33624064-33624083 | None:intergenic | 35.0% | |
| TCTTCTACATTGTGTTTGGT+TGG | + | chr1_3:33624181-33624200 | Msa0115070:intron | 35.0% | |
| GACAACTACTAGAAGACAAA+TGG | - | chr1_3:33624476-33624495 | None:intergenic | 35.0% | |
| !!! | GAGTTGTTTTTGTGTCCTTT+TGG | + | chr1_3:33624699-33624718 | Msa0115070:intron | 35.0% |
| CCATGAACAAGAAAACCAAA+AGG | - | chr1_3:33624717-33624736 | None:intergenic | 35.0% | |
| !!! | CCTTTTGGTTTTCTTGTTCA+TGG | + | chr1_3:33624714-33624733 | Msa0115070:intron | 35.0% |
| TTGGATACACTCTGAACAAA+TGG | - | chr1_3:33624881-33624900 | None:intergenic | 35.0% | |
| TAAAATGTACAAACGGATCG+AGG | - | chr1_3:33624905-33624924 | None:intergenic | 35.0% | |
| !!! | TTTTATTTTCGGGGTAGGAT+GGG | - | chr1_3:33624952-33624971 | None:intergenic | 35.0% |
| !!! | TTTTTATTTTCGGGGTAGGA+TGG | - | chr1_3:33624953-33624972 | None:intergenic | 35.0% |
| ! | GAGGTATTTGTAGAAGATTC+TGG | + | chr1_3:33625015-33625034 | Msa0115070:intron | 35.0% |
| !!! | TGACTTCAACTAGTTTTTGG+TGG | - | chr1_3:33625070-33625089 | None:intergenic | 35.0% |
| CAGAGTCTATTAGACTTACT+TGG | - | chr1_3:33625237-33625256 | None:intergenic | 35.0% | |
| CAAGTAAGTCTAATAGACTC+TGG | + | chr1_3:33625235-33625254 | Msa0115070:intron | 35.0% | |
| CCAATTTCTATTAGTCATCG+AGG | - | chr1_3:33625431-33625450 | None:intergenic | 35.0% | |
| CCTCGATGACTAATAGAAAT+TGG | + | chr1_3:33625428-33625447 | Msa0115070:intron | 35.0% | |
| !!! | TGATGTATTTTTTCCAAGCG+GGG | + | chr1_3:33625512-33625531 | Msa0115070:intron | 35.0% |
| AAAGACAGAATGTGAACCAA+GGG | - | chr1_3:33625602-33625621 | None:intergenic | 35.0% | |
| AAAAGACAGAATGTGAACCA+AGG | - | chr1_3:33625603-33625622 | None:intergenic | 35.0% | |
| !! | CTTTTGCTATCTGGAATTGA+AGG | + | chr1_3:33625624-33625643 | Msa0115070:intron | 35.0% |
| ! | ATCCTGACTGTTCTTTTTGA+TGG | + | chr1_3:33625700-33625719 | Msa0115070:intron | 35.0% |
| !!! | CTGTTCTTTTTGATGGTGTT+TGG | + | chr1_3:33625707-33625726 | Msa0115070:intron | 35.0% |
| !!! | TCTTTTTGATGGTGTTTGGT+TGG | + | chr1_3:33625711-33625730 | Msa0115070:intron | 35.0% |
| TCTTATCTCCCAATATTGGA+GGG | - | chr1_3:33625846-33625865 | None:intergenic | 35.0% | |
| ATCTTATCTCCCAATATTGG+AGG | - | chr1_3:33625847-33625866 | None:intergenic | 35.0% | |
| CACATCTTATCTCCCAATAT+TGG | - | chr1_3:33625850-33625869 | None:intergenic | 35.0% | |
| GCCAAATCTGTAGTTTATAG+AGG | - | chr1_3:33626843-33626862 | None:intergenic | 35.0% | |
| TATAAAAATGTTGACGCACG+CGG | + | chr1_3:33627247-33627266 | Msa0115070:CDS | 35.0% | |
| CAAACACTCACAAAAAACCA+TGG | - | chr1_3:33627502-33627521 | None:intergenic | 35.0% | |
| !!! | CATGGTTTTTTGTGAGTGTT+TGG | + | chr1_3:33627500-33627519 | Msa0115070:CDS | 35.0% |
| ! | AGTGTTTGGAGATTTGTTTC+CGG | + | chr1_3:33627514-33627533 | Msa0115070:CDS | 35.0% |
| !! | TGTGTTGTACTGATTCACAT+TGG | + | chr1_3:33627603-33627622 | Msa0115070:intron | 35.0% |
| TTAACTAAGGACATTGCCTA+TGG | - | chr1_3:33627840-33627859 | None:intergenic | 35.0% | |
| AACTTCACTAAACTGTTCGT+AGG | - | chr1_3:33628038-33628057 | None:intergenic | 35.0% | |
| ! | AGTTTGTTCGAATTCCACTA+CGG | - | chr1_3:33628122-33628141 | None:intergenic | 35.0% |
| TTTGTAGAGGTTGAGATCTT+TGG | + | chr1_3:33628277-33628296 | Msa0115070:intron | 35.0% | |
| ACTCAATATCATGTTGCGAA+AGG | + | chr1_3:33628826-33628845 | Msa0115070:intron | 35.0% | |
| CTCAATATCATGTTGCGAAA+GGG | + | chr1_3:33628827-33628846 | Msa0115070:intron | 35.0% | |
| TGACCAATTGTGCATGATTT+AGG | + | chr1_3:33629051-33629070 | Msa0115070:intron | 35.0% | |
| AAGTTGTTCGTAAGTGATGT+TGG | + | chr1_3:33629333-33629352 | Msa0115070:CDS | 35.0% | |
| CAAGAACATGTGTTGAAGAG+AGG | - | chr1_3:33622751-33622770 | None:intergenic | 40.0% | |
| TGGGTTTCACTATTTGAGAG+TGG | - | chr1_3:33622774-33622793 | None:intergenic | 40.0% | |
| TTGGCAGAGGAAAAATGACT+GGG | - | chr1_3:33622793-33622812 | None:intergenic | 40.0% | |
| TTTGGCAGAGGAAAAATGAC+TGG | - | chr1_3:33622794-33622813 | None:intergenic | 40.0% | |
| !! | GGGCAGAAGAAAAGAGTATT+TGG | - | chr1_3:33622812-33622831 | None:intergenic | 40.0% |
| ! | AAACCTTGGTTCTTCTACAC+AGG | + | chr1_3:33622888-33622907 | Msa0115070:CDS | 40.0% |
| TTACCTGTGTAGAAGAACCA+AGG | - | chr1_3:33622894-33622913 | None:intergenic | 40.0% | |
| TGAAATGAGATTCCTGACTG+CGG | - | chr1_3:33623006-33623025 | None:intergenic | 40.0% | |
| CAATAGTAGTGAATGAGTCC+AGG | - | chr1_3:33623076-33623095 | None:intergenic | 40.0% | |
| ! | TTCCTTTTTGCAGGGTTATG+GGG | + | chr1_3:33623203-33623222 | Msa0115070:intron | 40.0% |
| !! | GTTTTTGATTGCTCGGTCAA+TGG | + | chr1_3:33623242-33623261 | Msa0115070:CDS | 40.0% |
| CAGCAAAGATGTTTGTCCAA+TGG | + | chr1_3:33623277-33623296 | Msa0115070:CDS | 40.0% | |
| TGTTTGTCCAATGGCAGAAA+TGG | + | chr1_3:33623286-33623305 | Msa0115070:CDS | 40.0% | |
| AAGGGAAATGTCTACTAGCT+TGG | - | chr1_3:33623428-33623447 | None:intergenic | 40.0% | |
| TAGTAGACATTTCCCTTCCA+AGG | + | chr1_3:33623431-33623450 | Msa0115070:CDS | 40.0% | |
| TCTCTATACTAAGACGTGGT+AGG | - | chr1_3:33623563-33623582 | None:intergenic | 40.0% | |
| CTTATTAGTGCATCTTGCAC+GGG | - | chr1_3:33623691-33623710 | None:intergenic | 40.0% | |
| GCTTATTAGTGCATCTTGCA+CGG | - | chr1_3:33623692-33623711 | None:intergenic | 40.0% | |
| GCAAGATGCACTAATAAGCT+TGG | + | chr1_3:33623693-33623712 | Msa0115070:intron | 40.0% | |
| GGACAATGAAAGTGAACCAA+GGG | - | chr1_3:33624031-33624050 | None:intergenic | 40.0% | |
| AGGACAATGAAAGTGAACCA+AGG | - | chr1_3:33624032-33624051 | None:intergenic | 40.0% | |
| ! | TGTCCTTTTCTTTTGCCATG+TGG | + | chr1_3:33624046-33624065 | Msa0115070:intron | 40.0% |
| TCTACATTGTGTTTGGTTGG+AGG | + | chr1_3:33624184-33624203 | Msa0115070:intron | 40.0% | |
| CTACATTGTGTTTGGTTGGA+GGG | + | chr1_3:33624185-33624204 | Msa0115070:intron | 40.0% | |
| AACTAGAGCAACTCAATGTG+TGG | - | chr1_3:33624616-33624635 | None:intergenic | 40.0% | |
| ACACACATATGTGTGACATG+AGG | - | chr1_3:33624653-33624672 | None:intergenic | 40.0% | |
| TTAATGGGACACCTTAGTGA+TGG | + | chr1_3:33625090-33625109 | Msa0115070:intron | 40.0% | |
| ACAAAGTTGGCGAGCTTATA+AGG | + | chr1_3:33625323-33625342 | Msa0115070:intron | 40.0% | |
| AAGACAGAATGTGAACCAAG+GGG | - | chr1_3:33625601-33625620 | None:intergenic | 40.0% | |
| CACCATCAAAAAGAACAGTC+AGG | - | chr1_3:33625705-33625724 | None:intergenic | 40.0% | |
| GTTTGGTTGGAGTGAAATAG+AGG | + | chr1_3:33625724-33625743 | Msa0115070:intron | 40.0% | |
| TTGGAGTGAAATAGAGGAGA+GGG | + | chr1_3:33625730-33625749 | Msa0115070:intron | 40.0% | |
| TGTTAACTCCCCTCCAATAT+TGG | + | chr1_3:33625834-33625853 | Msa0115070:intron | 40.0% | |
| GTTAACTCCCCTCCAATATT+GGG | + | chr1_3:33625835-33625854 | Msa0115070:intron | 40.0% | |
| CTTATCTCCCAATATTGGAG+GGG | - | chr1_3:33625845-33625864 | None:intergenic | 40.0% | |
| GCTTATCCAGATACTTGCAT+TGG | + | chr1_3:33626053-33626072 | Msa0115070:intron | 40.0% | |
| !! | GCGGATAAACTAGTTGATAG+TGG | + | chr1_3:33626557-33626576 | Msa0115070:intron | 40.0% |
| ! | TGACAGAAATGGCTTTTGAG+AGG | + | chr1_3:33626977-33626996 | Msa0115070:intron | 40.0% |
| ! | TTTTCAGTGCTTTCAAGGGA+AGG | + | chr1_3:33627173-33627192 | Msa0115070:intron | 40.0% |
| TTTCAGTGCTTTCAAGGGAA+GGG | + | chr1_3:33627174-33627193 | Msa0115070:intron | 40.0% | |
| ! | TGAAAAGTTGATTGGGGTTC+TGG | + | chr1_3:33627207-33627226 | Msa0115070:CDS | 40.0% |
| AGCACTTTGCTAAACGTTCA+GGG | - | chr1_3:33627465-33627484 | None:intergenic | 40.0% | |
| TAGCACTTTGCTAAACGTTC+AGG | - | chr1_3:33627466-33627485 | None:intergenic | 40.0% | |
| CTAACATGCTACTGAGAGAT+GGG | - | chr1_3:33627690-33627709 | None:intergenic | 40.0% | |
| TCTAACATGCTACTGAGAGA+TGG | - | chr1_3:33627691-33627710 | None:intergenic | 40.0% | |
| ATCTCTCAGTAGCATGTTAG+AGG | + | chr1_3:33627690-33627709 | Msa0115070:intron | 40.0% | |
| !! | TGTACTAGAAAAGGTGTCGT+GGG | - | chr1_3:33628079-33628098 | None:intergenic | 40.0% |
| !! | TTGTACTAGAAAAGGTGTCG+TGG | - | chr1_3:33628080-33628099 | None:intergenic | 40.0% |
| ATTCCACTACGGTACAGTAT+TGG | - | chr1_3:33628111-33628130 | None:intergenic | 40.0% | |
| GAACAAACTTCTATCTTCCG+TGG | + | chr1_3:33628133-33628152 | Msa0115070:intron | 40.0% | |
| TCCACATTTGACAACACTGT+AGG | + | chr1_3:33628156-33628175 | Msa0115070:intron | 40.0% | |
| TCCTACAGTGTTGTCAAATG+TGG | - | chr1_3:33628160-33628179 | None:intergenic | 40.0% | |
| GATACCATAGTCGTTTGTAG+AGG | + | chr1_3:33628264-33628283 | Msa0115070:intron | 40.0% | |
| TCAACCTCTACAAACGACTA+TGG | - | chr1_3:33628271-33628290 | None:intergenic | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | - | chr1_3:33628685-33628704 | None:intergenic | 40.0% |
| ! | TTCCAACGTGAGCAATGTTT+TGG | + | chr1_3:33628859-33628878 | Msa0115070:intron | 40.0% |
| TCAAGCAAAGCCGTGAAAAT+GGG | - | chr1_3:33629274-33629293 | None:intergenic | 40.0% | |
| ATCAAGCAAAGCCGTGAAAA+TGG | - | chr1_3:33629275-33629294 | None:intergenic | 40.0% | |
| TTCACTTCAACGTCTTGGAT+AGG | - | chr1_3:33629405-33629424 | None:intergenic | 40.0% | |
| ! | AAGAGGTACAAGAAAGCACG+TGG | - | chr1_3:33622714-33622733 | None:intergenic | 45.0% |
| ! | CTCTTTTCTTCTGCCCCTAA+TGG | + | chr1_3:33622816-33622835 | Msa0115070:exon | 45.0% |
| ! | TCTGTTGCTTCAGCCATTAG+GGG | - | chr1_3:33622832-33622851 | None:intergenic | 45.0% |
| ! | GTCTGTTGCTTCAGCCATTA+GGG | - | chr1_3:33622833-33622852 | None:intergenic | 45.0% |
| ! | AGTCTGTTGCTTCAGCCATT+AGG | - | chr1_3:33622834-33622853 | None:intergenic | 45.0% |
| TTGTCCAATGGCAGAAATGG+AGG | + | chr1_3:33623289-33623308 | Msa0115070:CDS | 45.0% | |
| TAGTCCTCCATTTCTGCCAT+TGG | - | chr1_3:33623296-33623315 | None:intergenic | 45.0% | |
| ! | GCAGAAATGGAGGACTAGTA+TGG | + | chr1_3:33623299-33623318 | Msa0115070:CDS | 45.0% |
| ! | AGGACTAGTATGGTGCCTAA+TGG | + | chr1_3:33623309-33623328 | Msa0115070:CDS | 45.0% |
| ! | GGACTAGTATGGTGCCTAAT+GGG | + | chr1_3:33623310-33623329 | Msa0115070:CDS | 45.0% |
| CTAGCTTGGACAATCATCAC+AGG | - | chr1_3:33623414-33623433 | None:intergenic | 45.0% | |
| GATGCACTAATAAGCTTGGG+TGG | + | chr1_3:33623697-33623716 | Msa0115070:intron | 45.0% | |
| ! | TTTTCCTAATGGTCCCCACT+TGG | - | chr1_3:33623958-33623977 | None:intergenic | 45.0% |
| TAACCAGTTGGAAACTCCCT+TGG | + | chr1_3:33624012-33624031 | Msa0115070:intron | 45.0% | |
| GTTTGGTTGGAGGGAAATAG+AGG | + | chr1_3:33624194-33624213 | Msa0115070:intron | 45.0% | |
| TAGAGCAACTCAATGTGTGG+TGG | - | chr1_3:33624613-33624632 | None:intergenic | 45.0% | |
| GGTTGTCGAGAGTCTCATAT+TGG | + | chr1_3:33624735-33624754 | Msa0115070:intron | 45.0% | |
| ! | CAAAACTGGCTTCTAACGTG+AGG | - | chr1_3:33624802-33624821 | None:intergenic | 45.0% |
| ! | ACGTTAGAAGCCAGTTTTGC+AGG | + | chr1_3:33624803-33624822 | Msa0115070:intron | 45.0% |
| ! | CGTTAGAAGCCAGTTTTGCA+GGG | + | chr1_3:33624804-33624823 | Msa0115070:intron | 45.0% |
| CTAACTCAACCCTGCAAAAC+TGG | - | chr1_3:33624816-33624835 | None:intergenic | 45.0% | |
| ! | CAGTTTTGCAGGGTTGAGTT+AGG | + | chr1_3:33624814-33624833 | Msa0115070:intron | 45.0% |
| TGTACAAACGGATCGAGGAT+TGG | - | chr1_3:33624900-33624919 | None:intergenic | 45.0% | |
| ! | CACCTTAGTGATGGAGCATA+CGG | + | chr1_3:33625099-33625118 | Msa0115070:intron | 45.0% |
| TACCGTATGCTCCATCACTA+AGG | - | chr1_3:33625104-33625123 | None:intergenic | 45.0% | |
| GCATACGGTACTCATCTTGA+TGG | + | chr1_3:33625114-33625133 | Msa0115070:intron | 45.0% | |
| !! | GTACTCATCTTGATGGTGCA+AGG | + | chr1_3:33625121-33625140 | Msa0115070:intron | 45.0% |
| GTGCAAGGTTCAAGACAGTT+GGG | + | chr1_3:33625136-33625155 | Msa0115070:intron | 45.0% | |
| TGCAAGGTTCAAGACAGTTG+GGG | + | chr1_3:33625137-33625156 | Msa0115070:intron | 45.0% | |
| AAGTTGGCGAGCTTATAAGG+TGG | + | chr1_3:33625326-33625345 | Msa0115070:intron | 45.0% | |
| AGTTGGCGAGCTTATAAGGT+GGG | + | chr1_3:33625327-33625346 | Msa0115070:intron | 45.0% | |
| AGACAGAATGTGAACCAAGG+GGG | - | chr1_3:33625600-33625619 | None:intergenic | 45.0% | |
| GTTGGAGTGAAATAGAGGAG+AGG | + | chr1_3:33625729-33625748 | Msa0115070:intron | 45.0% | |
| TGGAGTGAAATAGAGGAGAG+GGG | + | chr1_3:33625731-33625750 | Msa0115070:intron | 45.0% | |
| AGGGGAGCTGAAATTGTGTA+AGG | - | chr1_3:33625908-33625927 | None:intergenic | 45.0% | |
| ACACAATTTCAGCTCCCCTT+TGG | + | chr1_3:33625909-33625928 | Msa0115070:intron | 45.0% | |
| TACTGGACAAGACAATTGCG+AGG | + | chr1_3:33626449-33626468 | Msa0115070:CDS | 45.0% | |
| ! | AAAGGAACTTGGGTCTTGTG+TGG | + | chr1_3:33626524-33626543 | Msa0115070:intron | 45.0% |
| ATGGTCTGCTATGTTTGTCG+AGG | - | chr1_3:33626865-33626884 | None:intergenic | 45.0% | |
| TGAATGCATAGGAAGGGAAG+TGG | - | chr1_3:33626953-33626972 | None:intergenic | 45.0% | |
| TTTCTTGTGTTGCCTTGTCC+AGG | - | chr1_3:33627543-33627562 | None:intergenic | 45.0% | |
| GGACAAGGCAACACAAGAAA+AGG | + | chr1_3:33627543-33627562 | Msa0115070:CDS | 45.0% | |
| TCAGTAGCATGTTAGAGGAG+AGG | + | chr1_3:33627695-33627714 | Msa0115070:intron | 45.0% | |
| CAGTAGCATGTTAGAGGAGA+GGG | + | chr1_3:33627696-33627715 | Msa0115070:intron | 45.0% | |
| !! | AAAGGTGTCGTGGGACAATA+GGG | - | chr1_3:33628070-33628089 | None:intergenic | 45.0% |
| !! | AAAAGGTGTCGTGGGACAAT+AGG | - | chr1_3:33628071-33628090 | None:intergenic | 45.0% |
| TGTCCAATACTGTACCGTAG+TGG | + | chr1_3:33628105-33628124 | Msa0115070:intron | 45.0% | |
| GTGTTGTCAAATGTGGACCA+CGG | - | chr1_3:33628153-33628172 | None:intergenic | 45.0% | |
| ! | CGCCGCAGAAGAAACTTTTA+TGG | - | chr1_3:33628226-33628245 | None:intergenic | 45.0% |
| GTCCAAAACGTTACTCACGT+TGG | + | chr1_3:33628680-33628699 | Msa0115070:intron | 45.0% | |
| GTCCAAAACATTGCTCACGT+TGG | - | chr1_3:33628864-33628883 | None:intergenic | 45.0% | |
| GACATTCTCCCAGAAGAGTA+TGG | + | chr1_3:33629360-33629379 | Msa0115070:CDS | 45.0% | |
| ! | ATTCTCCCAGAAGAGTATGG+TGG | + | chr1_3:33629363-33629382 | Msa0115070:CDS | 45.0% |
| CTCTTCCACCATACTCTTCT+GGG | - | chr1_3:33629371-33629390 | None:intergenic | 45.0% | |
| GTGGTTTCACTTCAACGTCT+TGG | - | chr1_3:33629410-33629429 | None:intergenic | 45.0% | |
| AGACGTTGAAGTGAAACCAC+CGG | + | chr1_3:33629410-33629429 | Msa0115070:CDS | 45.0% | |
| GAAGTGAAACCACCGGAAAA+CGG | + | chr1_3:33629417-33629436 | Msa0115070:CDS | 45.0% | |
| ! | CAAGTCGTTCTTCCGTTTTC+CGG | - | chr1_3:33629432-33629451 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAT+CGG | + | chr1_3:33623643-33623662 | Msa0115070:intron | 5.0% |
| !!! | AAACATTTTTTTAATTTTTT+TGG | + | chr1_3:33628794-33628813 | Msa0115070:intron | 5.0% |
| ! | AGGTACAAGAAAGCACGTGG+AGG | - | chr1_3:33622711-33622730 | None:intergenic | 50.0% |
| GAATCAGATTCTCCGCAGTC+AGG | + | chr1_3:33622991-33623010 | Msa0115070:intron | 50.0% | |
| GATGTGAGATTCCTGACTGC+AGG | + | chr1_3:33623048-33623067 | Msa0115070:intron | 50.0% | |
| GTCCCCATAACCCTGCAAAA+AGG | - | chr1_3:33623208-33623227 | None:intergenic | 50.0% | |
| ! | AAGGGGTTTTTGTTCGAGCC+AGG | - | chr1_3:33623766-33623785 | None:intergenic | 50.0% |
| TTGTCCAAGTGGGGACCATT+AGG | + | chr1_3:33623951-33623970 | Msa0115070:intron | 50.0% | |
| GAACCAAGGGAGTTTCCAAC+TGG | - | chr1_3:33624018-33624037 | None:intergenic | 50.0% | |
| !! | ATTTTCGGGGTAGGATGGGT+AGG | - | chr1_3:33624948-33624967 | None:intergenic | 50.0% |
| GGTGCAAGGTTCAAGACAGT+TGG | + | chr1_3:33625135-33625154 | Msa0115070:intron | 50.0% | |
| GGTTCAAGACAGTTGGGGTT+AGG | + | chr1_3:33625142-33625161 | Msa0115070:intron | 50.0% | |
| TCAAGACAGTTGGGGTTAGG+TGG | + | chr1_3:33625145-33625164 | Msa0115070:intron | 50.0% | |
| CAAGACAGTTGGGGTTAGGT+GGG | + | chr1_3:33625146-33625165 | Msa0115070:intron | 50.0% | |
| AAGACAGTTGGGGTTAGGTG+GGG | + | chr1_3:33625147-33625166 | Msa0115070:intron | 50.0% | |
| TTAGGTGGGGTAGGTGGAAT+AGG | + | chr1_3:33625160-33625179 | Msa0115070:intron | 50.0% | |
| GGTAGGTGGAATAGGTGGAA+AGG | + | chr1_3:33625168-33625187 | Msa0115070:intron | 50.0% | |
| ! | TTTTCCAAGCGGGGACCATT+AGG | + | chr1_3:33625521-33625540 | Msa0115070:intron | 50.0% |
| TGACCAATTGAGTTCCCCCT+TGG | + | chr1_3:33625583-33625602 | Msa0115070:intron | 50.0% | |
| GAACCAAGGGGGAACTCAAT+TGG | - | chr1_3:33625589-33625608 | None:intergenic | 50.0% | |
| !! | ATTGGGGTTCTGGATCTGCA+GGG | + | chr1_3:33627217-33627236 | Msa0115070:CDS | 50.0% |
| GACGCACGCGGTTTAATTAC+TGG | + | chr1_3:33627259-33627278 | Msa0115070:CDS | 50.0% | |
| ! | GAGATTTGTTTCCGGCTTCC+TGG | + | chr1_3:33627522-33627541 | Msa0115070:CDS | 50.0% |
| ! | GTGCCAGCTTCCCATTTTCA+CGG | + | chr1_3:33629261-33629280 | Msa0115070:intron | 50.0% |
| AAGCCGTGAAAATGGGAAGC+TGG | - | chr1_3:33629267-33629286 | None:intergenic | 50.0% | |
| GCTCTTCCACCATACTCTTC+TGG | - | chr1_3:33629372-33629391 | None:intergenic | 50.0% | |
| GATTCCTGACTGCAGGAACC+TGG | + | chr1_3:33623055-33623074 | Msa0115070:intron | 55.0% | |
| ATGGGGACCCTACACTGATG+AGG | + | chr1_3:33623220-33623239 | Msa0115070:CDS | 55.0% | |
| TGCATCTTGCACGGGCTTGT+TGG | - | chr1_3:33623683-33623702 | None:intergenic | 55.0% | |
| TCGGTTGCCATACTAGCACC+TGG | + | chr1_3:33623745-33623764 | Msa0115070:intron | 55.0% | |
| GTTCGAGCCAGGTGCTAGTA+TGG | - | chr1_3:33623755-33623774 | None:intergenic | 55.0% | |
| TTTGCCTAATGGTCCCCGCT+TGG | - | chr1_3:33625528-33625547 | None:intergenic | 55.0% | |
| CAGTGCTTTCAAGGGAAGGG+AGG | + | chr1_3:33627177-33627196 | Msa0115070:intron | 55.0% | |
| GCTTTCAAGGGAAGGGAGGT+AGG | + | chr1_3:33627181-33627200 | Msa0115070:CDS | 55.0% | |
| !! | GATTGGGGTTCTGGATCTGC+AGG | + | chr1_3:33627216-33627235 | Msa0115070:CDS | 55.0% |
| TGTTTCCGGCTTCCTGGACA+AGG | + | chr1_3:33627528-33627547 | Msa0115070:CDS | 55.0% | |
| TGTTGCCTTGTCCAGGAAGC+CGG | - | chr1_3:33627536-33627555 | None:intergenic | 55.0% | |
| ! | GTCGTTCTTCCGTTTTCCGG+TGG | - | chr1_3:33629429-33629448 | None:intergenic | 55.0% |
| GAGTCCAGGTTCCTGCAGTC+AGG | - | chr1_3:33623062-33623081 | None:intergenic | 60.0% | |
| TTCGGGGTAGGATGGGTAGG+AGG | - | chr1_3:33624945-33624964 | None:intergenic | 60.0% | |
| CAGTTGGGGTTAGGTGGGGT+AGG | + | chr1_3:33625151-33625170 | Msa0115070:intron | 60.0% | |
| TTGGGGTTAGGTGGGGTAGG+TGG | + | chr1_3:33625154-33625173 | Msa0115070:intron | 60.0% | |
| GGTGGGGTAGGTGGAATAGG+TGG | + | chr1_3:33625163-33625182 | Msa0115070:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33622655 | 33629680 | 33622655 | ID=Msa0115070;Name=Msa0115070 |
| chr1_3 | mRNA | 33622655 | 33629680 | 33622655 | ID=Msa0115070-mRNA-1;Parent=Msa0115070;Name=Msa0115070-mRNA-1;_AED=0.22;_eAED=0.22;_QI=180|1|1|1|1|1|6|228|248 |
| chr1_3 | exon | 33622655 | 33622909 | 33622655 | ID=Msa0115070-mRNA-1:exon:10524;Parent=Msa0115070-mRNA-1 |
| chr1_3 | exon | 33623216 | 33623471 | 33623216 | ID=Msa0115070-mRNA-1:exon:10525;Parent=Msa0115070-mRNA-1 |
| chr1_3 | exon | 33626434 | 33626470 | 33626434 | ID=Msa0115070-mRNA-1:exon:10526;Parent=Msa0115070-mRNA-1 |
| chr1_3 | exon | 33627180 | 33627297 | 33627180 | ID=Msa0115070-mRNA-1:exon:10527;Parent=Msa0115070-mRNA-1 |
| chr1_3 | exon | 33627454 | 33627564 | 33627454 | ID=Msa0115070-mRNA-1:exon:10528;Parent=Msa0115070-mRNA-1 |
| chr1_3 | exon | 33629303 | 33629680 | 33629303 | ID=Msa0115070-mRNA-1:exon:10529;Parent=Msa0115070-mRNA-1 |
| chr1_3 | five_prime_UTR | 33622655 | 33622834 | 33622655 | ID=Msa0115070-mRNA-1:five_prime_utr;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33622835 | 33622909 | 33622835 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33623216 | 33623471 | 33623216 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33626434 | 33626470 | 33626434 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33627180 | 33627297 | 33627180 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33627454 | 33627564 | 33627454 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | CDS | 33629303 | 33629452 | 33629303 | ID=Msa0115070-mRNA-1:cds;Parent=Msa0115070-mRNA-1 |
| chr1_3 | three_prime_UTR | 33629453 | 33629680 | 33629453 | ID=Msa0115070-mRNA-1:three_prime_utr;Parent=Msa0115070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
