AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012510 MtrunA17_Chr1g0161461 93.662 284 18 0 2 285 72 355 0.0 545
Msa0012510 MtrunA17_Chr4g0038511 56.198 242 88 5 7 241 6 236 9.92e-79 240
Msa0012510 MtrunA17_Chr4g0060591 40.187 107 64 0 1 107 22 128 4.85e-21 89.0
Msa0012510 MtrunA17_Chr4g0042041 44.681 94 51 1 12 104 81 174 9.73e-20 85.9
Msa0012510 MtrunA17_Chr2g0319301 44.681 94 51 1 12 104 74 167 1.21e-19 85.5
Msa0012510 MtrunA17_Chr2g0323031 44.565 92 50 1 12 102 110 201 4.67e-18 81.6
Msa0012510 MtrunA17_Chr1g0167821 34.911 169 73 5 12 174 95 232 1.15e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012510 AT3G19860.1 51.837 245 108 5 5 247 3 239 6.83e-75 231
Msa0012510 AT3G19860.3 51.837 245 108 5 5 247 34 270 1.71e-74 231
Msa0012510 AT3G19860.2 51.837 245 108 5 5 247 56 292 6.10e-74 230
Msa0012510 AT4G36060.2 40.323 248 95 8 11 246 30 236 9.85e-48 160
Msa0012510 AT4G36060.1 40.323 248 95 8 11 246 48 254 4.37e-47 159
Msa0012510 AT4G36060.4 52.349 149 54 4 11 159 30 161 6.90e-46 155
Msa0012510 AT4G36060.3 52.349 149 54 4 11 159 48 179 2.78e-45 154
Msa0012510 AT3G23210.2 38.406 138 74 5 12 138 138 275 2.58e-19 86.3
Msa0012510 AT3G23210.1 38.406 138 74 5 12 138 167 304 5.39e-19 85.5
Msa0012510 AT5G54680.1 43.000 100 52 2 12 110 76 171 6.53e-19 84.0
Msa0012510 AT3G47640.1 35.644 101 65 0 6 106 26 126 3.36e-17 79.3
Msa0012510 AT3G47640.3 35.644 101 65 0 6 106 26 126 3.36e-17 79.3
Msa0012510 AT3G47640.2 35.644 101 65 0 6 106 26 126 3.36e-17 79.3
Msa0012510 AT1G51070.1 45.745 94 50 1 12 104 71 164 4.01e-17 79.0
Msa0012510 AT1G51070.2 45.745 94 50 1 12 104 137 230 6.58e-17 79.3
Msa0012510 AT4G14410.2 33.103 145 74 3 12 155 129 251 1.64e-14 72.4
Msa0012510 AT4G14410.3 33.103 145 74 3 12 155 129 251 1.64e-14 72.4
Msa0012510 AT4G14410.1 41.489 94 54 1 12 104 135 228 1.95e-14 72.4

Find 96 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATATGACCAGGATTT+TGG 0.212723 1_1:-18746378 None:intergenic
ATATAGTTGTTTCCAATTCA+TGG 0.280004 1_1:+18746925 Msa0012510:three_prime_UTR
ATAGGAACGGGGTATGTATA+AGG 0.280119 1_1:-18746283 None:intergenic
TCATGGTTTATCCTGGTCTT+GGG 0.291702 1_1:+18746942 Msa0012510:three_prime_UTR
CGGTTAATTGACTTTGTATA+TGG 0.302371 1_1:+18746849 Msa0012510:exon
TTGGGGTATAATTTGACTAT+AGG 0.315221 1_1:+18746960 Msa0012510:three_prime_UTR
AAAGTCAATTAACCGGCTTT+TGG 0.324355 1_1:-18746841 None:intergenic
TTCATGGTTTATCCTGGTCT+TGG 0.329235 1_1:+18746941 Msa0012510:three_prime_UTR
TTGCACATCAAGAGGGAAAA+AGG 0.330643 1_1:+18746711 Msa0012510:CDS
TTATCGTTCCGTGGTCTATC+AGG 0.334582 1_1:-18745935 None:intergenic
CTCAATGTATATTCCGTTCT+CGG 0.346765 1_1:+18746408 Msa0012510:CDS
TCAAGCTCTGTTGCCACATC+TGG 0.367803 1_1:-18746568 None:intergenic
CATCAATTGGGAAACGTCAT+AGG 0.376740 1_1:+18745331 Msa0012510:CDS
GACCAGGATAAACCATGAAT+TGG 0.376747 1_1:-18746937 None:intergenic
TGAGCTGATGGCATCTCTAT+TGG 0.379396 1_1:-18746445 None:intergenic
AGGCTGACCGTGAGAAAATC+AGG 0.380020 1_1:+18745284 Msa0012510:CDS
GAGCCAGTATTCTGCATCTC+AGG 0.388043 1_1:+18746783 Msa0012510:CDS
ATCTCTATTGGAGGGATAGC+TGG 0.399284 1_1:-18746433 None:intergenic
TTGGATTGTCTCTGTGATGA+TGG 0.399425 1_1:-18745963 None:intergenic
ATTGGCATTGGCATAGGAAC+GGG 0.403675 1_1:-18746295 None:intergenic
ACTTGACCATATGTTAATTC+AGG 0.408385 1_1:+18746883 Msa0012510:three_prime_UTR
TGAGTTTCGCTTCTGCAACT+TGG 0.412909 1_1:+18747059 Msa0012510:three_prime_UTR
GTCCCTGAGATGCAGAATAC+TGG 0.415172 1_1:-18746786 None:intergenic
TTGCATAGGTGGTGGGTGAA+TGG 0.420730 1_1:-18746335 None:intergenic
TTCCAATTCATGGTTTATCC+TGG 0.429797 1_1:+18746935 Msa0012510:three_prime_UTR
TGGAGTGTTGCTGACACTGT+TGG 0.438406 1_1:-18746821 None:intergenic
CTTGCAACTAAAACTAAAGC+TGG 0.454862 1_1:+18747028 Msa0012510:three_prime_UTR
AAATGACCTGAATTAACATA+TGG 0.463412 1_1:-18746889 None:intergenic
TGGTTTCCAAAGTAAGGAAA+AGG 0.467804 1_1:-18746358 None:intergenic
CATATACAAAGTCAATTAAC+CGG 0.470052 1_1:-18746848 None:intergenic
ACCTGTTGTGTTGTTGATCC+AGG 0.471193 1_1:-18746601 None:intergenic
GAGCTTGAGCTTAAGATGCC+TGG 0.473388 1_1:+18746583 Msa0012510:CDS
GCCTGGATCAACAACACAAC+AGG 0.473485 1_1:+18746600 Msa0012510:CDS
GGGTGAATGGAAACCGGACC+AGG 0.474052 1_1:-18746322 None:intergenic
GAGTTTCGCTTCTGCAACTT+GGG 0.475017 1_1:+18747060 Msa0012510:three_prime_UTR
AATGCCAATCCCTCCTGGTC+CGG 0.475088 1_1:+18746309 Msa0012510:CDS
TTCGCTTGACTCTTCAGAAA+GGG 0.479143 1_1:-18746038 None:intergenic
GGAAAAGGTTGCATAGGTGG+TGG 0.479444 1_1:-18746343 None:intergenic
TTCTACAACAAAATAATCAA+TGG 0.479992 1_1:+18746992 Msa0012510:three_prime_UTR
GAAACCGGACCAGGAGGGAT+TGG 0.482079 1_1:-18746313 None:intergenic
CTAAACACGTGGGATGTAGA+AGG 0.488709 1_1:-18746472 None:intergenic
TACTTTGGAAACCAAAATCC+TGG 0.492171 1_1:+18746367 Msa0012510:CDS
ATGCCAATGCCAATCCCTCC+TGG 0.495420 1_1:+18746304 Msa0012510:CDS
ATGTTATGTCCTTTAGCACT+TGG 0.496696 1_1:-18745982 None:intergenic
TAGGAACGGGGTATGTATAA+GGG 0.499215 1_1:-18746282 None:intergenic
AGAGTCTCGAAGCAAGTCAC+CGG 0.507955 1_1:+18746501 Msa0012510:CDS
CATGGTTTATCCTGGTCTTG+GGG 0.517889 1_1:+18746943 Msa0012510:three_prime_UTR
CTTCGCTTGACTCTTCAGAA+AGG 0.518130 1_1:-18746039 None:intergenic
GGTGGTGGGTGAATGGAAAC+CGG 0.527150 1_1:-18746328 None:intergenic
GAGATTCTTAAGCACTCAAA+TGG 0.528944 1_1:-18747243 None:intergenic
ATGCTAATATATATTTACAC+TGG 0.532349 1_1:-18747266 None:intergenic
TGATAGACCACGGAACGATA+AGG 0.533070 1_1:+18745937 Msa0012510:CDS
GCTGATGGCATCTCTATTGG+AGG 0.536435 1_1:-18746442 None:intergenic
CTACATCTTTCTGCATCACT+AGG 0.537613 1_1:-18746538 None:intergenic
AGAGACAATCCAAGTGCTAA+AGG 0.542357 1_1:+18745973 Msa0012510:CDS
GGAGGGATTGGCATTGGCAT+AGG 0.546018 1_1:-18746301 None:intergenic
CAACTTGGGTAGCTCAATGA+TGG 0.546607 1_1:+18747074 Msa0012510:three_prime_UTR
GAATGGTCAATTGCAGTCCA+TGG 0.547429 1_1:-18746244 None:intergenic
GTCAGCAACACTCCAAAAGC+CGG 0.553559 1_1:+18746829 Msa0012510:CDS
ATGTAGGATTGCACATCAAG+AGG 0.557698 1_1:+18746703 Msa0012510:intron
GACTCAGAGTCATGCCGCCA+TGG 0.559055 1_1:+18746227 Msa0012510:CDS
TAAGGAAAAGGTTGCATAGG+TGG 0.560851 1_1:-18746346 None:intergenic
GGACCAGGAGGGATTGGCAT+TGG 0.561637 1_1:-18746307 None:intergenic
GGCTACTCATGACAATAGAA+TGG 0.562121 1_1:-18746261 None:intergenic
GATTGGCATTGGCATAGGAA+CGG 0.568920 1_1:-18746296 None:intergenic
GAAAAGGTTGCATAGGTGGT+GGG 0.571733 1_1:-18746342 None:intergenic
GTAGAAGGATACTGAGCTGA+TGG 0.572163 1_1:-18746457 None:intergenic
AAGTAAGGAAAAGGTTGCAT+AGG 0.574577 1_1:-18746349 None:intergenic
TGTAGGATTGCACATCAAGA+GGG 0.575223 1_1:+18746704 Msa0012510:intron
TGTATTTGAGAGGAGTGAGA+TGG 0.579638 1_1:+18745231 Msa0012510:exon
TCAAATTATACCCCAAGACC+AGG 0.584405 1_1:-18746953 None:intergenic
CTAGGTCTTCTTCTATGACC+CGG 0.584520 1_1:-18746520 None:intergenic
AGCCAGTATTCTGCATCTCA+GGG 0.590410 1_1:+18746784 Msa0012510:CDS
GGGATAGCTGGAGCCGAGAA+CGG 0.590573 1_1:-18746421 None:intergenic
ATATACATTGAGGATAGACT+TGG 0.594802 1_1:-18746397 None:intergenic
TGCTAATATATATTTACACT+GGG 0.599106 1_1:-18747265 None:intergenic
TGAATTAACATATGGTCAAG+TGG 0.601637 1_1:-18746881 None:intergenic
ATGGTTGCCTTATCGTTCCG+TGG 0.604228 1_1:-18745944 None:intergenic
GCATCATAACCCTCATGTGT+AGG 0.605356 1_1:+18747137 Msa0012510:three_prime_UTR
GATAGACTTGGAATATGACC+AGG 0.610908 1_1:-18746385 None:intergenic
TTGCAACTAAAACTAAAGCT+GGG 0.611947 1_1:+18747029 Msa0012510:three_prime_UTR
GAGTCTCGAAGCAAGTCACC+GGG 0.616600 1_1:+18746502 Msa0012510:CDS
TGAATGGAAACCGGACCAGG+AGG 0.624977 1_1:-18746319 None:intergenic
TGATATGTAACCTACACATG+AGG 0.627691 1_1:-18747147 None:intergenic
CGAGAACGGAATATACATTG+AGG 0.632276 1_1:-18746407 None:intergenic
TGTTGCTAGAAAAGTTCAGA+AGG 0.634372 1_1:+18745264 Msa0012510:CDS
GAATGGAAACCGGACCAGGA+GGG 0.634490 1_1:-18746318 None:intergenic
CTGATGGCATCTCTATTGGA+GGG 0.634505 1_1:-18746441 None:intergenic
ACAAAACTAATGTATTTGAG+AGG 0.635524 1_1:+18745221 Msa0012510:five_prime_UTR
TTGGCATTGGCATAGGAACG+GGG 0.653981 1_1:-18746294 None:intergenic
GATATGTAACCTACACATGA+GGG 0.657137 1_1:-18747146 None:intergenic
ATGTAGTGTGTCTCCAGATG+TGG 0.671060 1_1:+18746555 Msa0012510:CDS
ATGCAGATCCTGATAGACCA+CGG 0.700661 1_1:+18745927 Msa0012510:intron
TGACCGTGAGAAAATCAGGA+GGG 0.711741 1_1:+18745288 Msa0012510:CDS
CTGACCGTGAGAAAATCAGG+AGG 0.717963 1_1:+18745287 Msa0012510:CDS
TGGTCAATTGCAGTCCATGG+CGG 0.722199 1_1:-18746241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGTTAGTATTATAAAAAA+GGG - chr1_1:18745464-18745483 None:intergenic 15.0%
!! AGATGTTAGTATTATAAAAA+AGG - chr1_1:18745465-18745484 None:intergenic 15.0%
!! ACATTAAATACTTTAATCAT+TGG + chr1_1:18745683-18745702 Msa0012510:intron 15.0%
!! GATGTTAGTATTATAAAAAA+GGG - chr1_1:18745464-18745483 None:intergenic 15.0%
!! AGATGTTAGTATTATAAAAA+AGG - chr1_1:18745465-18745484 None:intergenic 15.0%
!! ACATTAAATACTTTAATCAT+TGG + chr1_1:18745683-18745702 Msa0012510:intron 15.0%
!!! AATGATCATTTTCATCAATT+GGG + chr1_1:18745319-18745338 Msa0012510:CDS 20.0%
!! TTGATCTTAAAACAAATTGA+AGG - chr1_1:18746081-18746100 None:intergenic 20.0%
!! TTCTACAACAAAATAATCAA+TGG + chr1_1:18746992-18747011 Msa0012510:three_prime_UTR 20.0%
!! TGCTAATATATATTTACACT+GGG - chr1_1:18747268-18747287 None:intergenic 20.0%
!! ATGCTAATATATATTTACAC+TGG - chr1_1:18747269-18747288 None:intergenic 20.0%
!!! AATGATCATTTTCATCAATT+GGG + chr1_1:18745319-18745338 Msa0012510:CDS 20.0%
!! TTGATCTTAAAACAAATTGA+AGG - chr1_1:18746081-18746100 None:intergenic 20.0%
!! TTCTACAACAAAATAATCAA+TGG + chr1_1:18746992-18747011 Msa0012510:three_prime_UTR 20.0%
!! TGCTAATATATATTTACACT+GGG - chr1_1:18747268-18747287 None:intergenic 20.0%
!! ATGCTAATATATATTTACAC+TGG - chr1_1:18747269-18747288 None:intergenic 20.0%
! ACAAAACTAATGTATTTGAG+AGG + chr1_1:18745221-18745240 Msa0012510:five_prime_UTR 25.0%
!! GAATGATCATTTTCATCAAT+TGG + chr1_1:18745318-18745337 Msa0012510:CDS 25.0%
! ATTTACACTAAACCTTTGTT+TGG + chr1_1:18745593-18745612 Msa0012510:intron 25.0%
! TGTAAAACAACAACAATCAA+AGG - chr1_1:18745819-18745838 None:intergenic 25.0%
! CATATACAAAGTCAATTAAC+CGG - chr1_1:18746851-18746870 None:intergenic 25.0%
! AAATGACCTGAATTAACATA+TGG - chr1_1:18746892-18746911 None:intergenic 25.0%
!! ATATAGTTGTTTCCAATTCA+TGG + chr1_1:18746925-18746944 Msa0012510:three_prime_UTR 25.0%
! ACAAAACTAATGTATTTGAG+AGG + chr1_1:18745221-18745240 Msa0012510:five_prime_UTR 25.0%
!! GAATGATCATTTTCATCAAT+TGG + chr1_1:18745318-18745337 Msa0012510:CDS 25.0%
! ATTTACACTAAACCTTTGTT+TGG + chr1_1:18745593-18745612 Msa0012510:intron 25.0%
! TGTAAAACAACAACAATCAA+AGG - chr1_1:18745819-18745838 None:intergenic 25.0%
! CATATACAAAGTCAATTAAC+CGG - chr1_1:18746851-18746870 None:intergenic 25.0%
! AAATGACCTGAATTAACATA+TGG - chr1_1:18746892-18746911 None:intergenic 25.0%
!! ATATAGTTGTTTCCAATTCA+TGG + chr1_1:18746925-18746944 Msa0012510:three_prime_UTR 25.0%
TTGAATTCACACTGTGATTT+AGG + chr1_1:18745366-18745385 Msa0012510:intron 30.0%
TGAATTCACACTGTGATTTA+GGG + chr1_1:18745367-18745386 Msa0012510:intron 30.0%
!! TTCTAAAATTTGAAAGAGCC+TGG - chr1_1:18745649-18745668 None:intergenic 30.0%
ATTGGTCCTGATAAAACATA+CGG + chr1_1:18745701-18745720 Msa0012510:intron 30.0%
! TTTTTGGATGCTTTTAGACA+TGG + chr1_1:18745757-18745776 Msa0012510:intron 30.0%
!! GGATTTGTTATAACGTGTTA+TGG + chr1_1:18745778-18745797 Msa0012510:intron 30.0%
CATGAATTGCCAATTTGAAA+TGG + chr1_1:18745858-18745877 Msa0012510:intron 30.0%
ATATACATTGAGGATAGACT+TGG - chr1_1:18746400-18746419 None:intergenic 30.0%
!! TTTTAGCACTGAAACAAGTT+TGG - chr1_1:18746660-18746679 None:intergenic 30.0%
ACCTTCATTCTGATTTATGT+AGG + chr1_1:18746687-18746706 Msa0012510:intron 30.0%
TCCTACATAAATCAGAATGA+AGG - chr1_1:18746691-18746710 None:intergenic 30.0%
! CGGTTAATTGACTTTGTATA+TGG + chr1_1:18746849-18746868 Msa0012510:exon 30.0%
TGAATTAACATATGGTCAAG+TGG - chr1_1:18746884-18746903 None:intergenic 30.0%
ACTTGACCATATGTTAATTC+AGG + chr1_1:18746883-18746902 Msa0012510:three_prime_UTR 30.0%
TTGGGGTATAATTTGACTAT+AGG + chr1_1:18746960-18746979 Msa0012510:three_prime_UTR 30.0%
!!! AGCTTTAGTTTTAGTTGCAA+GGG - chr1_1:18747029-18747048 None:intergenic 30.0%
TTGCAACTAAAACTAAAGCT+GGG + chr1_1:18747029-18747048 Msa0012510:three_prime_UTR 30.0%
TTGAATTCACACTGTGATTT+AGG + chr1_1:18745366-18745385 Msa0012510:intron 30.0%
TGAATTCACACTGTGATTTA+GGG + chr1_1:18745367-18745386 Msa0012510:intron 30.0%
!! TTCTAAAATTTGAAAGAGCC+TGG - chr1_1:18745649-18745668 None:intergenic 30.0%
ATTGGTCCTGATAAAACATA+CGG + chr1_1:18745701-18745720 Msa0012510:intron 30.0%
! TTTTTGGATGCTTTTAGACA+TGG + chr1_1:18745757-18745776 Msa0012510:intron 30.0%
!! GGATTTGTTATAACGTGTTA+TGG + chr1_1:18745778-18745797 Msa0012510:intron 30.0%
CATGAATTGCCAATTTGAAA+TGG + chr1_1:18745858-18745877 Msa0012510:intron 30.0%
ATATACATTGAGGATAGACT+TGG - chr1_1:18746400-18746419 None:intergenic 30.0%
!! TTTTAGCACTGAAACAAGTT+TGG - chr1_1:18746660-18746679 None:intergenic 30.0%
ACCTTCATTCTGATTTATGT+AGG + chr1_1:18746687-18746706 Msa0012510:intron 30.0%
TCCTACATAAATCAGAATGA+AGG - chr1_1:18746691-18746710 None:intergenic 30.0%
! CGGTTAATTGACTTTGTATA+TGG + chr1_1:18746849-18746868 Msa0012510:exon 30.0%
TGAATTAACATATGGTCAAG+TGG - chr1_1:18746884-18746903 None:intergenic 30.0%
ACTTGACCATATGTTAATTC+AGG + chr1_1:18746883-18746902 Msa0012510:three_prime_UTR 30.0%
TTGGGGTATAATTTGACTAT+AGG + chr1_1:18746960-18746979 Msa0012510:three_prime_UTR 30.0%
!!! AGCTTTAGTTTTAGTTGCAA+GGG - chr1_1:18747029-18747048 None:intergenic 30.0%
TTGCAACTAAAACTAAAGCT+GGG + chr1_1:18747029-18747048 Msa0012510:three_prime_UTR 30.0%
!! ACTTTTCTAGCAACAACACT+TGG - chr1_1:18745259-18745278 None:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + chr1_1:18745264-18745283 Msa0012510:CDS 35.0%
TCACAGTGTGAATTCAAAGA+TGG - chr1_1:18745363-18745382 None:intergenic 35.0%
ACCAAGAAAATATTGCAGCA+AGG + chr1_1:18745489-18745508 Msa0012510:intron 35.0%
CCAAGAAAATATTGCAGCAA+GGG + chr1_1:18745490-18745509 Msa0012510:intron 35.0%
!! TAGACTATGAAGCATTGACA+CGG - chr1_1:18745531-18745550 None:intergenic 35.0%
! CACTAAACCTTTGTTTGGTT+TGG + chr1_1:18745598-18745617 Msa0012510:intron 35.0%
ATAACGTGTTATGGCATAAG+TGG + chr1_1:18745787-18745806 Msa0012510:intron 35.0%
TGTTATGGCATAAGTGGAAA+AGG + chr1_1:18745793-18745812 Msa0012510:intron 35.0%
CCACAACTACCATTTCAAAT+TGG - chr1_1:18745870-18745889 None:intergenic 35.0%
! CCAATTTGAAATGGTAGTTG+TGG + chr1_1:18745867-18745886 Msa0012510:intron 35.0%
ATGTTATGTCCTTTAGCACT+TGG - chr1_1:18745985-18746004 None:intergenic 35.0%
AAGTAAGGAAAAGGTTGCAT+AGG - chr1_1:18746352-18746371 None:intergenic 35.0%
! ATGCAACCTTTTCCTTACTT+TGG + chr1_1:18746352-18746371 Msa0012510:CDS 35.0%
TGGTTTCCAAAGTAAGGAAA+AGG - chr1_1:18746361-18746380 None:intergenic 35.0%
!!! GGATTTTGGTTTCCAAAGTA+AGG - chr1_1:18746367-18746386 None:intergenic 35.0%
! TACTTTGGAAACCAAAATCC+TGG + chr1_1:18746367-18746386 Msa0012510:CDS 35.0%
! TTGGAATATGACCAGGATTT+TGG - chr1_1:18746381-18746400 None:intergenic 35.0%
CTCAATGTATATTCCGTTCT+CGG + chr1_1:18746408-18746427 Msa0012510:CDS 35.0%
!! AAAGTCAATTAACCGGCTTT+TGG - chr1_1:18746844-18746863 None:intergenic 35.0%
TTCCAATTCATGGTTTATCC+TGG + chr1_1:18746935-18746954 Msa0012510:three_prime_UTR 35.0%
!!! GCTTTAGTTTTAGTTGCAAG+GGG - chr1_1:18747028-18747047 None:intergenic 35.0%
!!! CAGCTTTAGTTTTAGTTGCA+AGG - chr1_1:18747030-18747049 None:intergenic 35.0%
CTTGCAACTAAAACTAAAGC+TGG + chr1_1:18747028-18747047 Msa0012510:three_prime_UTR 35.0%
GATATGTAACCTACACATGA+GGG - chr1_1:18747149-18747168 None:intergenic 35.0%
TGATATGTAACCTACACATG+AGG - chr1_1:18747150-18747169 None:intergenic 35.0%
GAGATTCTTAAGCACTCAAA+TGG - chr1_1:18747246-18747265 None:intergenic 35.0%
!! ACTTTTCTAGCAACAACACT+TGG - chr1_1:18745259-18745278 None:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + chr1_1:18745264-18745283 Msa0012510:CDS 35.0%
TCACAGTGTGAATTCAAAGA+TGG - chr1_1:18745363-18745382 None:intergenic 35.0%
ACCAAGAAAATATTGCAGCA+AGG + chr1_1:18745489-18745508 Msa0012510:intron 35.0%
CCAAGAAAATATTGCAGCAA+GGG + chr1_1:18745490-18745509 Msa0012510:intron 35.0%
!! TAGACTATGAAGCATTGACA+CGG - chr1_1:18745531-18745550 None:intergenic 35.0%
! CACTAAACCTTTGTTTGGTT+TGG + chr1_1:18745598-18745617 Msa0012510:intron 35.0%
ATAACGTGTTATGGCATAAG+TGG + chr1_1:18745787-18745806 Msa0012510:intron 35.0%
TGTTATGGCATAAGTGGAAA+AGG + chr1_1:18745793-18745812 Msa0012510:intron 35.0%
CCACAACTACCATTTCAAAT+TGG - chr1_1:18745870-18745889 None:intergenic 35.0%
! CCAATTTGAAATGGTAGTTG+TGG + chr1_1:18745867-18745886 Msa0012510:intron 35.0%
ATGTTATGTCCTTTAGCACT+TGG - chr1_1:18745985-18746004 None:intergenic 35.0%
AAGTAAGGAAAAGGTTGCAT+AGG - chr1_1:18746352-18746371 None:intergenic 35.0%
! ATGCAACCTTTTCCTTACTT+TGG + chr1_1:18746352-18746371 Msa0012510:CDS 35.0%
TGGTTTCCAAAGTAAGGAAA+AGG - chr1_1:18746361-18746380 None:intergenic 35.0%
!!! GGATTTTGGTTTCCAAAGTA+AGG - chr1_1:18746367-18746386 None:intergenic 35.0%
! TACTTTGGAAACCAAAATCC+TGG + chr1_1:18746367-18746386 Msa0012510:CDS 35.0%
! TTGGAATATGACCAGGATTT+TGG - chr1_1:18746381-18746400 None:intergenic 35.0%
CTCAATGTATATTCCGTTCT+CGG + chr1_1:18746408-18746427 Msa0012510:CDS 35.0%
!! AAAGTCAATTAACCGGCTTT+TGG - chr1_1:18746844-18746863 None:intergenic 35.0%
TTCCAATTCATGGTTTATCC+TGG + chr1_1:18746935-18746954 Msa0012510:three_prime_UTR 35.0%
!!! GCTTTAGTTTTAGTTGCAAG+GGG - chr1_1:18747028-18747047 None:intergenic 35.0%
!!! CAGCTTTAGTTTTAGTTGCA+AGG - chr1_1:18747030-18747049 None:intergenic 35.0%
CTTGCAACTAAAACTAAAGC+TGG + chr1_1:18747028-18747047 Msa0012510:three_prime_UTR 35.0%
GATATGTAACCTACACATGA+GGG - chr1_1:18747149-18747168 None:intergenic 35.0%
TGATATGTAACCTACACATG+AGG - chr1_1:18747150-18747169 None:intergenic 35.0%
GAGATTCTTAAGCACTCAAA+TGG - chr1_1:18747246-18747265 None:intergenic 35.0%
TGTATTTGAGAGGAGTGAGA+TGG + chr1_1:18745231-18745250 Msa0012510:exon 40.0%
CATCAATTGGGAAACGTCAT+AGG + chr1_1:18745331-18745350 Msa0012510:CDS 40.0%
AATTGGGAAACGTCATAGGT+AGG + chr1_1:18745335-18745354 Msa0012510:intron 40.0%
! CCCTTGCTGCAATATTTTCT+TGG - chr1_1:18745493-18745512 None:intergenic 40.0%
GTCCTGATAAAACATACGGA+CGG + chr1_1:18745705-18745724 Msa0012510:intron 40.0%
! AGTCTCTAGGTCTCTGTTTT+TGG + chr1_1:18745741-18745760 Msa0012510:intron 40.0%
TTGGATTGTCTCTGTGATGA+TGG - chr1_1:18745966-18745985 None:intergenic 40.0%
AGAGACAATCCAAGTGCTAA+AGG + chr1_1:18745973-18745992 Msa0012510:CDS 40.0%
TTCGCTTGACTCTTCAGAAA+GGG - chr1_1:18746041-18746060 None:intergenic 40.0%
GGCTACTCATGACAATAGAA+TGG - chr1_1:18746264-18746283 None:intergenic 40.0%
TAGGAACGGGGTATGTATAA+GGG - chr1_1:18746285-18746304 None:intergenic 40.0%
ATAGGAACGGGGTATGTATA+AGG - chr1_1:18746286-18746305 None:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - chr1_1:18746349-18746368 None:intergenic 40.0%
GATAGACTTGGAATATGACC+AGG - chr1_1:18746388-18746407 None:intergenic 40.0%
CGAGAACGGAATATACATTG+AGG - chr1_1:18746410-18746429 None:intergenic 40.0%
! CTCTTTTCGACTAAACACGT+GGG - chr1_1:18746485-18746504 None:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - chr1_1:18746486-18746505 None:intergenic 40.0%
CTACATCTTTCTGCATCACT+AGG - chr1_1:18746541-18746560 None:intergenic 40.0%
ATGTAGGATTGCACATCAAG+AGG + chr1_1:18746703-18746722 Msa0012510:intron 40.0%
TGTAGGATTGCACATCAAGA+GGG + chr1_1:18746704-18746723 Msa0012510:intron 40.0%
TTGCACATCAAGAGGGAAAA+AGG + chr1_1:18746711-18746730 Msa0012510:CDS 40.0%
! AGGGAAAAAGGCAAAGCATT+CGG + chr1_1:18746723-18746742 Msa0012510:CDS 40.0%
GACCAGGATAAACCATGAAT+TGG - chr1_1:18746940-18746959 None:intergenic 40.0%
TTCATGGTTTATCCTGGTCT+TGG + chr1_1:18746941-18746960 Msa0012510:three_prime_UTR 40.0%
! TCATGGTTTATCCTGGTCTT+GGG + chr1_1:18746942-18746961 Msa0012510:three_prime_UTR 40.0%
TCAAATTATACCCCAAGACC+AGG - chr1_1:18746956-18746975 None:intergenic 40.0%
TGTATTTGAGAGGAGTGAGA+TGG + chr1_1:18745231-18745250 Msa0012510:exon 40.0%
CATCAATTGGGAAACGTCAT+AGG + chr1_1:18745331-18745350 Msa0012510:CDS 40.0%
AATTGGGAAACGTCATAGGT+AGG + chr1_1:18745335-18745354 Msa0012510:intron 40.0%
! CCCTTGCTGCAATATTTTCT+TGG - chr1_1:18745493-18745512 None:intergenic 40.0%
GTCCTGATAAAACATACGGA+CGG + chr1_1:18745705-18745724 Msa0012510:intron 40.0%
! AGTCTCTAGGTCTCTGTTTT+TGG + chr1_1:18745741-18745760 Msa0012510:intron 40.0%
TTGGATTGTCTCTGTGATGA+TGG - chr1_1:18745966-18745985 None:intergenic 40.0%
AGAGACAATCCAAGTGCTAA+AGG + chr1_1:18745973-18745992 Msa0012510:CDS 40.0%
TTCGCTTGACTCTTCAGAAA+GGG - chr1_1:18746041-18746060 None:intergenic 40.0%
GGCTACTCATGACAATAGAA+TGG - chr1_1:18746264-18746283 None:intergenic 40.0%
TAGGAACGGGGTATGTATAA+GGG - chr1_1:18746285-18746304 None:intergenic 40.0%
ATAGGAACGGGGTATGTATA+AGG - chr1_1:18746286-18746305 None:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - chr1_1:18746349-18746368 None:intergenic 40.0%
GATAGACTTGGAATATGACC+AGG - chr1_1:18746388-18746407 None:intergenic 40.0%
CGAGAACGGAATATACATTG+AGG - chr1_1:18746410-18746429 None:intergenic 40.0%
! CTCTTTTCGACTAAACACGT+GGG - chr1_1:18746485-18746504 None:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - chr1_1:18746486-18746505 None:intergenic 40.0%
CTACATCTTTCTGCATCACT+AGG - chr1_1:18746541-18746560 None:intergenic 40.0%
ATGTAGGATTGCACATCAAG+AGG + chr1_1:18746703-18746722 Msa0012510:intron 40.0%
TGTAGGATTGCACATCAAGA+GGG + chr1_1:18746704-18746723 Msa0012510:intron 40.0%
TTGCACATCAAGAGGGAAAA+AGG + chr1_1:18746711-18746730 Msa0012510:CDS 40.0%
! AGGGAAAAAGGCAAAGCATT+CGG + chr1_1:18746723-18746742 Msa0012510:CDS 40.0%
GACCAGGATAAACCATGAAT+TGG - chr1_1:18746940-18746959 None:intergenic 40.0%
TTCATGGTTTATCCTGGTCT+TGG + chr1_1:18746941-18746960 Msa0012510:three_prime_UTR 40.0%
! TCATGGTTTATCCTGGTCTT+GGG + chr1_1:18746942-18746961 Msa0012510:three_prime_UTR 40.0%
TCAAATTATACCCCAAGACC+AGG - chr1_1:18746956-18746975 None:intergenic 40.0%
TGACCGTGAGAAAATCAGGA+GGG + chr1_1:18745288-18745307 Msa0012510:CDS 45.0%
! GATCCCTCCTGATTTTCTCA+CGG - chr1_1:18745294-18745313 None:intergenic 45.0%
!! CTATGAAGCATTGACACGGA+CGG - chr1_1:18745527-18745546 None:intergenic 45.0%
!! ACCTTTGTTTGGTTTGGCGT+TGG + chr1_1:18745604-18745623 Msa0012510:intron 45.0%
AACTTGATTCTCGCATCACC+AGG + chr1_1:18745628-18745647 Msa0012510:intron 45.0%
! CTCCGTCCGTATGTTTTATC+AGG - chr1_1:18745710-18745729 None:intergenic 45.0%
CTGATAAAACATACGGACGG+AGG + chr1_1:18745708-18745727 Msa0012510:intron 45.0%
AGGAGACCTATTCAGTCTCT+AGG + chr1_1:18745728-18745747 Msa0012510:intron 45.0%
CAGAGACCTAGAGACTGAAT+AGG - chr1_1:18745737-18745756 None:intergenic 45.0%
ATGCAGATCCTGATAGACCA+CGG + chr1_1:18745927-18745946 Msa0012510:intron 45.0%
TTATCGTTCCGTGGTCTATC+AGG - chr1_1:18745938-18745957 None:intergenic 45.0%
TGATAGACCACGGAACGATA+AGG + chr1_1:18745937-18745956 Msa0012510:CDS 45.0%
CTTCGCTTGACTCTTCAGAA+AGG - chr1_1:18746042-18746061 None:intergenic 45.0%
CTGAAGAGTCAAGCGAAGTA+AGG + chr1_1:18746044-18746063 Msa0012510:intron 45.0%
GAATGGTCAATTGCAGTCCA+TGG - chr1_1:18746247-18746266 None:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - chr1_1:18746298-18746317 None:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - chr1_1:18746299-18746318 None:intergenic 45.0%
GAAAAGGTTGCATAGGTGGT+GGG - chr1_1:18746345-18746364 None:intergenic 45.0%
ATCTCTATTGGAGGGATAGC+TGG - chr1_1:18746436-18746455 None:intergenic 45.0%
CTGATGGCATCTCTATTGGA+GGG - chr1_1:18746444-18746463 None:intergenic 45.0%
TGAGCTGATGGCATCTCTAT+TGG - chr1_1:18746448-18746467 None:intergenic 45.0%
GTAGAAGGATACTGAGCTGA+TGG - chr1_1:18746460-18746479 None:intergenic 45.0%
CTAAACACGTGGGATGTAGA+AGG - chr1_1:18746475-18746494 None:intergenic 45.0%
CTAGGTCTTCTTCTATGACC+CGG - chr1_1:18746523-18746542 None:intergenic 45.0%
ATGTAGTGTGTCTCCAGATG+TGG + chr1_1:18746555-18746574 Msa0012510:CDS 45.0%
! ACCTGTTGTGTTGTTGATCC+AGG - chr1_1:18746604-18746623 None:intergenic 45.0%
AGCCAGTATTCTGCATCTCA+GGG + chr1_1:18746784-18746803 Msa0012510:CDS 45.0%
!! CATGGTTTATCCTGGTCTTG+GGG + chr1_1:18746943-18746962 Msa0012510:three_prime_UTR 45.0%
TGAGTTTCGCTTCTGCAACT+TGG + chr1_1:18747059-18747078 Msa0012510:three_prime_UTR 45.0%
GAGTTTCGCTTCTGCAACTT+GGG + chr1_1:18747060-18747079 Msa0012510:three_prime_UTR 45.0%
CAACTTGGGTAGCTCAATGA+TGG + chr1_1:18747074-18747093 Msa0012510:three_prime_UTR 45.0%
GCATCATAACCCTCATGTGT+AGG + chr1_1:18747137-18747156 Msa0012510:three_prime_UTR 45.0%
TGACCGTGAGAAAATCAGGA+GGG + chr1_1:18745288-18745307 Msa0012510:CDS 45.0%
! GATCCCTCCTGATTTTCTCA+CGG - chr1_1:18745294-18745313 None:intergenic 45.0%
!! CTATGAAGCATTGACACGGA+CGG - chr1_1:18745527-18745546 None:intergenic 45.0%
!! ACCTTTGTTTGGTTTGGCGT+TGG + chr1_1:18745604-18745623 Msa0012510:intron 45.0%
AACTTGATTCTCGCATCACC+AGG + chr1_1:18745628-18745647 Msa0012510:intron 45.0%
! CTCCGTCCGTATGTTTTATC+AGG - chr1_1:18745710-18745729 None:intergenic 45.0%
CTGATAAAACATACGGACGG+AGG + chr1_1:18745708-18745727 Msa0012510:intron 45.0%
AGGAGACCTATTCAGTCTCT+AGG + chr1_1:18745728-18745747 Msa0012510:intron 45.0%
CAGAGACCTAGAGACTGAAT+AGG - chr1_1:18745737-18745756 None:intergenic 45.0%
ATGCAGATCCTGATAGACCA+CGG + chr1_1:18745927-18745946 Msa0012510:intron 45.0%
TTATCGTTCCGTGGTCTATC+AGG - chr1_1:18745938-18745957 None:intergenic 45.0%
TGATAGACCACGGAACGATA+AGG + chr1_1:18745937-18745956 Msa0012510:CDS 45.0%
CTTCGCTTGACTCTTCAGAA+AGG - chr1_1:18746042-18746061 None:intergenic 45.0%
CTGAAGAGTCAAGCGAAGTA+AGG + chr1_1:18746044-18746063 Msa0012510:intron 45.0%
GAATGGTCAATTGCAGTCCA+TGG - chr1_1:18746247-18746266 None:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - chr1_1:18746298-18746317 None:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - chr1_1:18746299-18746318 None:intergenic 45.0%
GAAAAGGTTGCATAGGTGGT+GGG - chr1_1:18746345-18746364 None:intergenic 45.0%
ATCTCTATTGGAGGGATAGC+TGG - chr1_1:18746436-18746455 None:intergenic 45.0%
CTGATGGCATCTCTATTGGA+GGG - chr1_1:18746444-18746463 None:intergenic 45.0%
TGAGCTGATGGCATCTCTAT+TGG - chr1_1:18746448-18746467 None:intergenic 45.0%
GTAGAAGGATACTGAGCTGA+TGG - chr1_1:18746460-18746479 None:intergenic 45.0%
CTAAACACGTGGGATGTAGA+AGG - chr1_1:18746475-18746494 None:intergenic 45.0%
CTAGGTCTTCTTCTATGACC+CGG - chr1_1:18746523-18746542 None:intergenic 45.0%
ATGTAGTGTGTCTCCAGATG+TGG + chr1_1:18746555-18746574 Msa0012510:CDS 45.0%
! ACCTGTTGTGTTGTTGATCC+AGG - chr1_1:18746604-18746623 None:intergenic 45.0%
AGCCAGTATTCTGCATCTCA+GGG + chr1_1:18746784-18746803 Msa0012510:CDS 45.0%
!! CATGGTTTATCCTGGTCTTG+GGG + chr1_1:18746943-18746962 Msa0012510:three_prime_UTR 45.0%
TGAGTTTCGCTTCTGCAACT+TGG + chr1_1:18747059-18747078 Msa0012510:three_prime_UTR 45.0%
GAGTTTCGCTTCTGCAACTT+GGG + chr1_1:18747060-18747079 Msa0012510:three_prime_UTR 45.0%
CAACTTGGGTAGCTCAATGA+TGG + chr1_1:18747074-18747093 Msa0012510:three_prime_UTR 45.0%
GCATCATAACCCTCATGTGT+AGG + chr1_1:18747137-18747156 Msa0012510:three_prime_UTR 45.0%
AGGCTGACCGTGAGAAAATC+AGG + chr1_1:18745284-18745303 Msa0012510:CDS 50.0%
CTGACCGTGAGAAAATCAGG+AGG + chr1_1:18745287-18745306 Msa0012510:CDS 50.0%
GCCAACGCCAAACCAAACAA+AGG - chr1_1:18745608-18745627 None:intergenic 50.0%
ATGGTTGCCTTATCGTTCCG+TGG - chr1_1:18745947-18745966 None:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+CGG - chr1_1:18746244-18746263 None:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - chr1_1:18746297-18746316 None:intergenic 50.0%
!! TTGCATAGGTGGTGGGTGAA+TGG - chr1_1:18746338-18746357 None:intergenic 50.0%
GGAAAAGGTTGCATAGGTGG+TGG - chr1_1:18746346-18746365 None:intergenic 50.0%
GCTGATGGCATCTCTATTGG+AGG - chr1_1:18746445-18746464 None:intergenic 50.0%
AGAGTCTCGAAGCAAGTCAC+CGG + chr1_1:18746501-18746520 Msa0012510:CDS 50.0%
TCAAGCTCTGTTGCCACATC+TGG - chr1_1:18746571-18746590 None:intergenic 50.0%
GAGCTTGAGCTTAAGATGCC+TGG + chr1_1:18746583-18746602 Msa0012510:CDS 50.0%
GCCTGGATCAACAACACAAC+AGG + chr1_1:18746600-18746619 Msa0012510:CDS 50.0%
GAGCCAGTATTCTGCATCTC+AGG + chr1_1:18746783-18746802 Msa0012510:CDS 50.0%
GTCCCTGAGATGCAGAATAC+TGG - chr1_1:18746789-18746808 None:intergenic 50.0%
!! TGGAGTGTTGCTGACACTGT+TGG - chr1_1:18746824-18746843 None:intergenic 50.0%
GTCAGCAACACTCCAAAAGC+CGG + chr1_1:18746829-18746848 Msa0012510:CDS 50.0%
AGGCTGACCGTGAGAAAATC+AGG + chr1_1:18745284-18745303 Msa0012510:CDS 50.0%
CTGACCGTGAGAAAATCAGG+AGG + chr1_1:18745287-18745306 Msa0012510:CDS 50.0%
GCCAACGCCAAACCAAACAA+AGG - chr1_1:18745608-18745627 None:intergenic 50.0%
ATGGTTGCCTTATCGTTCCG+TGG - chr1_1:18745947-18745966 None:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+CGG - chr1_1:18746244-18746263 None:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - chr1_1:18746297-18746316 None:intergenic 50.0%
!! TTGCATAGGTGGTGGGTGAA+TGG - chr1_1:18746338-18746357 None:intergenic 50.0%
GGAAAAGGTTGCATAGGTGG+TGG - chr1_1:18746346-18746365 None:intergenic 50.0%
GCTGATGGCATCTCTATTGG+AGG - chr1_1:18746445-18746464 None:intergenic 50.0%
AGAGTCTCGAAGCAAGTCAC+CGG + chr1_1:18746501-18746520 Msa0012510:CDS 50.0%
TCAAGCTCTGTTGCCACATC+TGG - chr1_1:18746571-18746590 None:intergenic 50.0%
GAGCTTGAGCTTAAGATGCC+TGG + chr1_1:18746583-18746602 Msa0012510:CDS 50.0%
GCCTGGATCAACAACACAAC+AGG + chr1_1:18746600-18746619 Msa0012510:CDS 50.0%
GAGCCAGTATTCTGCATCTC+AGG + chr1_1:18746783-18746802 Msa0012510:CDS 50.0%
GTCCCTGAGATGCAGAATAC+TGG - chr1_1:18746789-18746808 None:intergenic 50.0%
!! TGGAGTGTTGCTGACACTGT+TGG - chr1_1:18746824-18746843 None:intergenic 50.0%
GTCAGCAACACTCCAAAAGC+CGG + chr1_1:18746829-18746848 Msa0012510:CDS 50.0%
!! GGAGGGATTGGCATTGGCAT+AGG - chr1_1:18746304-18746323 None:intergenic 55.0%
ATGCCAATGCCAATCCCTCC+TGG + chr1_1:18746304-18746323 Msa0012510:CDS 55.0%
AATGCCAATCCCTCCTGGTC+CGG + chr1_1:18746309-18746328 Msa0012510:CDS 55.0%
GAATGGAAACCGGACCAGGA+GGG - chr1_1:18746321-18746340 None:intergenic 55.0%
TGAATGGAAACCGGACCAGG+AGG - chr1_1:18746322-18746341 None:intergenic 55.0%
!! GGTGGTGGGTGAATGGAAAC+CGG - chr1_1:18746331-18746350 None:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+GGG + chr1_1:18746502-18746521 Msa0012510:CDS 55.0%
!! GGAGGGATTGGCATTGGCAT+AGG - chr1_1:18746304-18746323 None:intergenic 55.0%
ATGCCAATGCCAATCCCTCC+TGG + chr1_1:18746304-18746323 Msa0012510:CDS 55.0%
AATGCCAATCCCTCCTGGTC+CGG + chr1_1:18746309-18746328 Msa0012510:CDS 55.0%
GAATGGAAACCGGACCAGGA+GGG - chr1_1:18746321-18746340 None:intergenic 55.0%
TGAATGGAAACCGGACCAGG+AGG - chr1_1:18746322-18746341 None:intergenic 55.0%
!! GGTGGTGGGTGAATGGAAAC+CGG - chr1_1:18746331-18746350 None:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+GGG + chr1_1:18746502-18746521 Msa0012510:CDS 55.0%
GACTCAGAGTCATGCCGCCA+TGG + chr1_1:18746227-18746246 Msa0012510:CDS 60.0%
! GGACCAGGAGGGATTGGCAT+TGG - chr1_1:18746310-18746329 None:intergenic 60.0%
GAAACCGGACCAGGAGGGAT+TGG - chr1_1:18746316-18746335 None:intergenic 60.0%
GGGTGAATGGAAACCGGACC+AGG - chr1_1:18746325-18746344 None:intergenic 60.0%
GGGATAGCTGGAGCCGAGAA+CGG - chr1_1:18746424-18746443 None:intergenic 60.0%
GACTCAGAGTCATGCCGCCA+TGG + chr1_1:18746227-18746246 Msa0012510:CDS 60.0%
! GGACCAGGAGGGATTGGCAT+TGG - chr1_1:18746310-18746329 None:intergenic 60.0%
GAAACCGGACCAGGAGGGAT+TGG - chr1_1:18746316-18746335 None:intergenic 60.0%
GGGTGAATGGAAACCGGACC+AGG - chr1_1:18746325-18746344 None:intergenic 60.0%
GGGATAGCTGGAGCCGAGAA+CGG - chr1_1:18746424-18746443 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18745215 18747353 18745215 ID=Msa0012510;Name=Msa0012510
chr1_1 mRNA 18745215 18747353 18745215 ID=Msa0012510-mRNA-1;Parent=Msa0012510;Name=Msa0012510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=35|1|1|1|0.75|0.6|5|458|285
chr1_1 exon 18745215 18745352 18745215 ID=Msa0012510-mRNA-1:exon:6912;Parent=Msa0012510-mRNA-1
chr1_1 exon 18745933 18746060 18745933 ID=Msa0012510-mRNA-1:exon:6913;Parent=Msa0012510-mRNA-1
chr1_1 exon 18746142 18746621 18746142 ID=Msa0012510-mRNA-1:exon:6914;Parent=Msa0012510-mRNA-1
chr1_1 exon 18746709 18747170 18746709 ID=Msa0012510-mRNA-1:exon:6915;Parent=Msa0012510-mRNA-1
chr1_1 exon 18747211 18747353 18747211 ID=Msa0012510-mRNA-1:exon:6916;Parent=Msa0012510-mRNA-1
chr1_1 five_prime_UTR 18745215 18745249 18745215 ID=Msa0012510-mRNA-1:five_prime_utr;Parent=Msa0012510-mRNA-1
chr1_1 CDS 18745250 18745352 18745250 ID=Msa0012510-mRNA-1:cds;Parent=Msa0012510-mRNA-1
chr1_1 CDS 18745933 18746060 18745933 ID=Msa0012510-mRNA-1:cds;Parent=Msa0012510-mRNA-1
chr1_1 CDS 18746142 18746621 18746142 ID=Msa0012510-mRNA-1:cds;Parent=Msa0012510-mRNA-1
chr1_1 CDS 18746709 18746855 18746709 ID=Msa0012510-mRNA-1:cds;Parent=Msa0012510-mRNA-1
chr1_1 three_prime_UTR 18746856 18747170 18746856 ID=Msa0012510-mRNA-1:three_prime_utr;Parent=Msa0012510-mRNA-1
chr1_1 three_prime_UTR 18747211 18747353 18747211 ID=Msa0012510-mRNA-1:three_prime_utr;Parent=Msa0012510-mRNA-1
Gene Sequence

>Msa0012510

ATGGAACCAAGTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGATCGCTTGAATGATCATTTTCATCAATTGGGAAACGTCATAGATCCTGATAGACCACGGAACGATAAGGCAACCATCATCACAGAGACAATCCAAGTGCTAAAGGACATAACATCTGAAGTTGATCGACTGAAAACAGAGCACAAATCCCTTTCTGAAGAGTCAAGCGAACTAATACAAGAAAAGAATGAATTGCGAGAAGAGAAAGCAACTTTAAAATCTGATATAGAAAATCTTAATTCTCAGTATCAGCAGAGACTCAGAGTCATGCCGCCATGGACTGCAATTGACCATTCTATTGTCATGAGTAGCCCTTATACATACCCCGTTCCTATGCCAATGCCAATCCCTCCTGGTCCGGTTTCCATTCACCCACCACCTATGCAACCTTTTCCTTACTTTGGAAACCAAAATCCTGGTCATATTCCAAGTCTATCCTCAATGTATATTCCGTTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAGCTCAGTATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCGGGTCATAGAAGAAGACCTAGTGATGCAGAAAGATGTAGTGTGTCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCAACAACACAACAGGATTGCACATCAAGAGGGAAAAAGGCAAAGCATTCGGTGATGAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGTGTCAGCAACACTCCAAAAGCCGGTTAA
Protein sequence

>Msa0012510

MEPSVVARKVQKADREKIRRDRLNDHFHQLGNVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESSELIQEKNELREEKATLKSDIENLNSQYQQRLRVMPPWTAIDHSIVMSSPYTYPVPMPMPIPPGPVSIHPPPMQPFPYFGNQNPGHIPSLSSMYIPFSAPAIPPIEMPSAQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSTTQQDCTSRGKKAKHSVMSDRIIIDESASSQYSASQGLQDSSNSVSNTPKAG*