Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152410 | sp|Q9LT23|BH121_ARATH | 59.302 | 172 | 68 | 2 | 5 | 175 | 56 | 226 | 7.29e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152410 | A0A072VR73 | 93.478 | 184 | 12 | 0 | 4 | 187 | 74 | 257 | 5.62e-122 | 359 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0152410 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012510 | Msa0152410 | 0.891912 | 2.575001e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152410 | MtrunA17_Chr1g0161461 | 93.478 | 184 | 12 | 0 | 4 | 187 | 74 | 257 | 1.08e-125 | 359 |
| Msa0152410 | MtrunA17_Chr4g0038511 | 59.669 | 181 | 66 | 3 | 7 | 187 | 6 | 179 | 2.02e-65 | 203 |
| Msa0152410 | MtrunA17_Chr4g0060591 | 40.187 | 107 | 64 | 0 | 1 | 107 | 22 | 128 | 1.58e-21 | 89.0 |
| Msa0152410 | MtrunA17_Chr4g0042041 | 41.905 | 105 | 60 | 1 | 1 | 104 | 70 | 174 | 1.34e-20 | 86.7 |
| Msa0152410 | MtrunA17_Chr2g0319301 | 42.718 | 103 | 58 | 1 | 3 | 104 | 65 | 167 | 1.97e-20 | 85.9 |
| Msa0152410 | MtrunA17_Chr2g0323031 | 44.565 | 92 | 50 | 1 | 12 | 102 | 110 | 201 | 1.06e-18 | 82.0 |
| Msa0152410 | MtrunA17_Chr1g0167821 | 45.545 | 101 | 50 | 2 | 12 | 111 | 95 | 191 | 4.06e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152410 | AT3G19860.1 | 59.302 | 172 | 68 | 2 | 5 | 175 | 3 | 173 | 1.47e-65 | 204 |
| Msa0152410 | AT3G19860.3 | 59.302 | 172 | 68 | 2 | 5 | 175 | 34 | 204 | 1.95e-65 | 205 |
| Msa0152410 | AT3G19860.2 | 59.302 | 172 | 68 | 2 | 5 | 175 | 56 | 226 | 7.41e-65 | 204 |
| Msa0152410 | AT4G36060.2 | 52.349 | 149 | 54 | 4 | 11 | 159 | 30 | 161 | 1.61e-46 | 155 |
| Msa0152410 | AT4G36060.4 | 52.349 | 149 | 54 | 4 | 11 | 159 | 30 | 161 | 3.40e-46 | 154 |
| Msa0152410 | AT4G36060.1 | 52.349 | 149 | 54 | 4 | 11 | 159 | 48 | 179 | 7.92e-46 | 154 |
| Msa0152410 | AT4G36060.3 | 52.349 | 149 | 54 | 4 | 11 | 159 | 48 | 179 | 1.22e-45 | 153 |
| Msa0152410 | AT5G54680.1 | 43.000 | 100 | 52 | 2 | 12 | 110 | 76 | 171 | 1.80e-19 | 84.0 |
| Msa0152410 | AT3G23210.2 | 38.406 | 138 | 74 | 5 | 12 | 138 | 138 | 275 | 1.97e-19 | 84.7 |
| Msa0152410 | AT3G23210.1 | 38.406 | 138 | 74 | 5 | 12 | 138 | 167 | 304 | 3.87e-19 | 84.3 |
| Msa0152410 | AT1G51070.1 | 45.745 | 94 | 50 | 1 | 12 | 104 | 71 | 164 | 6.86e-18 | 79.3 |
| Msa0152410 | AT1G51070.2 | 45.745 | 94 | 50 | 1 | 12 | 104 | 137 | 230 | 8.15e-18 | 80.5 |
| Msa0152410 | AT3G47640.1 | 35.644 | 101 | 65 | 0 | 6 | 106 | 26 | 126 | 4.91e-17 | 77.4 |
| Msa0152410 | AT3G47640.3 | 35.644 | 101 | 65 | 0 | 6 | 106 | 26 | 126 | 4.91e-17 | 77.4 |
| Msa0152410 | AT3G47640.2 | 35.644 | 101 | 65 | 0 | 6 | 106 | 26 | 126 | 4.91e-17 | 77.4 |
| Msa0152410 | AT4G14410.1 | 41.000 | 100 | 54 | 2 | 12 | 110 | 135 | 230 | 1.02e-14 | 71.6 |
| Msa0152410 | AT4G14410.2 | 41.000 | 100 | 54 | 2 | 12 | 110 | 129 | 224 | 1.17e-14 | 71.6 |
| Msa0152410 | AT4G14410.3 | 41.000 | 100 | 54 | 2 | 12 | 110 | 129 | 224 | 1.17e-14 | 71.6 |
Find 57 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAATATGACCAGGATTT+TGG | 0.212723 | 1_4:-15027811 | None:intergenic |
| ATAGGAACGGGGTATGTATA+AGG | 0.280119 | 1_4:-15027716 | None:intergenic |
| TTATCGTTCCGTGGTCTATC+AGG | 0.334582 | 1_4:-15027368 | None:intergenic |
| CTCAATGTATATTCCGTTCT+CGG | 0.346765 | 1_4:+15027841 | Msa0152410:CDS |
| CATCAATTGGGAAACGTCAT+AGG | 0.376740 | 1_4:+15026663 | Msa0152410:CDS |
| TGAGCTGATGGCATCTCTAT+TGG | 0.379396 | 1_4:-15027878 | None:intergenic |
| AGGCTGACCGTGAGAAAATC+AGG | 0.380020 | 1_4:+15026616 | Msa0152410:CDS |
| ATCTCTATTGGAGGGATAGC+TGG | 0.399284 | 1_4:-15027866 | None:intergenic |
| ATTGGCATTGGCATAGGAAC+GGG | 0.403675 | 1_4:-15027728 | None:intergenic |
| TGAGTTTCGCTTCTGCAACT+TGG | 0.412909 | 1_4:+15028492 | Msa0152410:CDS |
| TTGCATAGGTGGTGGGTGAA+TGG | 0.420730 | 1_4:-15027768 | None:intergenic |
| TTGAATTGTCTCTGTGATGA+TGG | 0.441426 | 1_4:-15027396 | None:intergenic |
| CTTGCAACTAAAACTAAAGC+TGG | 0.454862 | 1_4:+15028461 | Msa0152410:CDS |
| TGGTTTCCAAAGTAAGGAAA+AGG | 0.467804 | 1_4:-15027791 | None:intergenic |
| GGGTGAATGGAAACCGGACC+AGG | 0.474052 | 1_4:-15027755 | None:intergenic |
| GAGTTTCGCTTCTGCAACTT+GGG | 0.475017 | 1_4:+15028493 | Msa0152410:CDS |
| AATGCCAATCCCTCCTGGTC+CGG | 0.475088 | 1_4:+15027742 | Msa0152410:CDS |
| TTCGCTTGACTCTTCAGAAA+GGG | 0.479143 | 1_4:-15027471 | None:intergenic |
| GGAAAAGGTTGCATAGGTGG+TGG | 0.479444 | 1_4:-15027776 | None:intergenic |
| TTCTACAACAAAATAATCAA+TGG | 0.479992 | 1_4:+15028425 | Msa0152410:CDS |
| GAAACCGGACCAGGAGGGAT+TGG | 0.482079 | 1_4:-15027746 | None:intergenic |
| TACTTTGGAAACCAAAATCC+TGG | 0.492171 | 1_4:+15027800 | Msa0152410:CDS |
| ATGCCAATGCCAATCCCTCC+TGG | 0.495420 | 1_4:+15027737 | Msa0152410:CDS |
| TAGGAACGGGGTATGTATAA+GGG | 0.499215 | 1_4:-15027715 | None:intergenic |
| GTTGTTGTTTGTGTAGAGAA+AGG | 0.509704 | 1_4:+15026553 | Msa0152410:five_prime_UTR |
| AGAGACAATTCAAGTGCTAA+AGG | 0.518046 | 1_4:+15027406 | Msa0152410:CDS |
| CTTCGCTTGACTCTTCAGAA+AGG | 0.518130 | 1_4:-15027472 | None:intergenic |
| GTGTAGAGAAAGGAGTGAGA+TGG | 0.522999 | 1_4:+15026563 | Msa0152410:exon |
| GGTGGTGGGTGAATGGAAAC+CGG | 0.527150 | 1_4:-15027761 | None:intergenic |
| TGATAGACCACGGAACGATA+AGG | 0.533070 | 1_4:+15027370 | Msa0152410:CDS |
| GCTGATGGCATCTCTATTGG+AGG | 0.536435 | 1_4:-15027875 | None:intergenic |
| GGAGGGATTGGCATTGGCAT+AGG | 0.546018 | 1_4:-15027734 | None:intergenic |
| CAACTTGGGTAGCTCAATGA+TGG | 0.546607 | 1_4:+15028507 | Msa0152410:CDS |
| GAATGGTCAATTGCAGTCCA+TGG | 0.547429 | 1_4:-15027677 | None:intergenic |
| GACTCAGAGTCATGCCGCCA+TGG | 0.559055 | 1_4:+15027660 | Msa0152410:CDS |
| TAAGGAAAAGGTTGCATAGG+TGG | 0.560851 | 1_4:-15027779 | None:intergenic |
| GGACCAGGAGGGATTGGCAT+TGG | 0.561637 | 1_4:-15027740 | None:intergenic |
| GGCTACTCATGACAATAGAA+TGG | 0.562121 | 1_4:-15027694 | None:intergenic |
| GATTGGCATTGGCATAGGAA+CGG | 0.568920 | 1_4:-15027729 | None:intergenic |
| GAAAAGGTTGCATAGGTGGT+GGG | 0.571733 | 1_4:-15027775 | None:intergenic |
| GTAGAAGGATACTGAGCTGA+TGG | 0.572163 | 1_4:-15027890 | None:intergenic |
| AAGTAAGGAAAAGGTTGCAT+AGG | 0.574577 | 1_4:-15027782 | None:intergenic |
| GGGATAGCTGGAGCCGAGAA+CGG | 0.590573 | 1_4:-15027854 | None:intergenic |
| ATATACATTGAGGATAGACT+TGG | 0.594802 | 1_4:-15027830 | None:intergenic |
| ATGGTTGCCTTATCGTTCCG+TGG | 0.604228 | 1_4:-15027377 | None:intergenic |
| GATAGACTTGGAATATGACC+AGG | 0.610908 | 1_4:-15027818 | None:intergenic |
| TTGCAACTAAAACTAAAGCT+GGG | 0.611947 | 1_4:+15028462 | Msa0152410:CDS |
| TGAATGGAAACCGGACCAGG+AGG | 0.624977 | 1_4:-15027752 | None:intergenic |
| CGAGAACGGAATATACATTG+AGG | 0.632276 | 1_4:-15027840 | None:intergenic |
| TGTTGCTAGAAAAGTTCAGA+AGG | 0.634372 | 1_4:+15026596 | Msa0152410:CDS |
| GAATGGAAACCGGACCAGGA+GGG | 0.634490 | 1_4:-15027751 | None:intergenic |
| CTGATGGCATCTCTATTGGA+GGG | 0.634505 | 1_4:-15027874 | None:intergenic |
| TTGGCATTGGCATAGGAACG+GGG | 0.653981 | 1_4:-15027727 | None:intergenic |
| ATGCAGATCCTGATAGACCA+CGG | 0.700661 | 1_4:+15027360 | Msa0152410:intron |
| TGACCGTGAGAAAATCAGGA+GGG | 0.711741 | 1_4:+15026620 | Msa0152410:CDS |
| CTGACCGTGAGAAAATCAGG+AGG | 0.717963 | 1_4:+15026619 | Msa0152410:CDS |
| TGGTCAATTGCAGTCCATGG+CGG | 0.722199 | 1_4:-15027674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAATACTTTAATAAT+TGG | + | chr1_4:15027116-15027135 | Msa0152410:intron | 10.0% |
| !! | ACATTAAATACTTTAATAAT+TGG | + | chr1_4:15027116-15027135 | Msa0152410:intron | 10.0% |
| !!! | TTTACATTAAACATTTGTTT+TGG | + | chr1_4:15027026-15027045 | Msa0152410:intron | 15.0% |
| !!! | TTTACATTAAACATTTGTTT+TGG | + | chr1_4:15027026-15027045 | Msa0152410:intron | 15.0% |
| !!! | AATGATCATTTTCATCAATT+GGG | + | chr1_4:15026651-15026670 | Msa0152410:CDS | 20.0% |
| !! | TTACTTATATTGTTCATATG+TGG | + | chr1_4:15026760-15026779 | Msa0152410:intron | 20.0% |
| !! | TTGTTTATCAGATGTAAAAA+GGG | - | chr1_4:15026906-15026925 | None:intergenic | 20.0% |
| !! | TTGATCTTAAAACAAATTGA+AGG | - | chr1_4:15027514-15027533 | None:intergenic | 20.0% |
| !! | TTCTACAACAAAATAATCAA+TGG | + | chr1_4:15028425-15028444 | Msa0152410:CDS | 20.0% |
| !!! | AATGATCATTTTCATCAATT+GGG | + | chr1_4:15026651-15026670 | Msa0152410:CDS | 20.0% |
| !! | TTACTTATATTGTTCATATG+TGG | + | chr1_4:15026760-15026779 | Msa0152410:intron | 20.0% |
| !! | TTGTTTATCAGATGTAAAAA+GGG | - | chr1_4:15026906-15026925 | None:intergenic | 20.0% |
| !! | TTGATCTTAAAACAAATTGA+AGG | - | chr1_4:15027514-15027533 | None:intergenic | 20.0% |
| !! | TTCTACAACAAAATAATCAA+TGG | + | chr1_4:15028425-15028444 | Msa0152410:CDS | 20.0% |
| !! | GAATGATCATTTTCATCAAT+TGG | + | chr1_4:15026650-15026669 | Msa0152410:CDS | 25.0% |
| !!! | TGTTTGTAATCTGTTTTGTT+GGG | - | chr1_4:15026828-15026847 | None:intergenic | 25.0% |
| !! | TTGTTTGTAATCTGTTTTGT+TGG | - | chr1_4:15026829-15026848 | None:intergenic | 25.0% |
| !! | CAAGAAAAGTGTAGAAAAAA+GGG | - | chr1_4:15026855-15026874 | None:intergenic | 25.0% |
| !! | TCAAGAAAAGTGTAGAAAAA+AGG | - | chr1_4:15026856-15026875 | None:intergenic | 25.0% |
| ! | CTTGTTTATCAGATGTAAAA+AGG | - | chr1_4:15026907-15026926 | None:intergenic | 25.0% |
| ! | TGTAAAACAACAACAATCAA+AGG | - | chr1_4:15027252-15027271 | None:intergenic | 25.0% |
| ! | CATATACAAAGTCAATTAAC+CGG | - | chr1_4:15028284-15028303 | None:intergenic | 25.0% |
| ! | AAATGACCTGAATTAACATA+TGG | - | chr1_4:15028325-15028344 | None:intergenic | 25.0% |
| !! | ATATAGTTGTTTCCAATTCA+TGG | + | chr1_4:15028358-15028377 | Msa0152410:intron | 25.0% |
| !! | GAATGATCATTTTCATCAAT+TGG | + | chr1_4:15026650-15026669 | Msa0152410:CDS | 25.0% |
| !!! | TGTTTGTAATCTGTTTTGTT+GGG | - | chr1_4:15026828-15026847 | None:intergenic | 25.0% |
| !! | TTGTTTGTAATCTGTTTTGT+TGG | - | chr1_4:15026829-15026848 | None:intergenic | 25.0% |
| !! | CAAGAAAAGTGTAGAAAAAA+GGG | - | chr1_4:15026855-15026874 | None:intergenic | 25.0% |
| !! | TCAAGAAAAGTGTAGAAAAA+AGG | - | chr1_4:15026856-15026875 | None:intergenic | 25.0% |
| ! | CTTGTTTATCAGATGTAAAA+AGG | - | chr1_4:15026907-15026926 | None:intergenic | 25.0% |
| ! | TGTAAAACAACAACAATCAA+AGG | - | chr1_4:15027252-15027271 | None:intergenic | 25.0% |
| ! | CATATACAAAGTCAATTAAC+CGG | - | chr1_4:15028284-15028303 | None:intergenic | 25.0% |
| ! | AAATGACCTGAATTAACATA+TGG | - | chr1_4:15028325-15028344 | None:intergenic | 25.0% |
| !! | ATATAGTTGTTTCCAATTCA+TGG | + | chr1_4:15028358-15028377 | Msa0152410:intron | 25.0% |
| TTGAATTCACACTCTGATTT+AGG | + | chr1_4:15026698-15026717 | Msa0152410:intron | 30.0% | |
| TGAATTCACACTCTGATTTA+GGG | + | chr1_4:15026699-15026718 | Msa0152410:intron | 30.0% | |
| GTTAAAGCAATCTGATGAAT+CGG | + | chr1_4:15026792-15026811 | Msa0152410:intron | 30.0% | |
| AACAAGAAAATATTGCAGCA+AGG | + | chr1_4:15026921-15026940 | Msa0152410:intron | 30.0% | |
| ACAAGAAAATATTGCAGCAA+GGG | + | chr1_4:15026922-15026941 | Msa0152410:intron | 30.0% | |
| ATTGGTCCTGATAAAACATA+CGG | + | chr1_4:15027134-15027153 | Msa0152410:intron | 30.0% | |
| ! | TTTTTGGATGCTTTTAGACA+TGG | + | chr1_4:15027190-15027209 | Msa0152410:intron | 30.0% |
| !! | GGATTTGTTATAACGTGTTA+TGG | + | chr1_4:15027211-15027230 | Msa0152410:intron | 30.0% |
| CATGAATTGCCAATTTGAAA+TGG | + | chr1_4:15027291-15027310 | Msa0152410:intron | 30.0% | |
| ATATACATTGAGGATAGACT+TGG | - | chr1_4:15027833-15027852 | None:intergenic | 30.0% | |
| !! | TTTTAGCACTGAAACAAGTT+TGG | - | chr1_4:15028093-15028112 | None:intergenic | 30.0% |
| ACCTTCATTCTGATTTATGT+AGG | + | chr1_4:15028120-15028139 | Msa0152410:intron | 30.0% | |
| TCCTACATAAATCAGAATGA+AGG | - | chr1_4:15028124-15028143 | None:intergenic | 30.0% | |
| ! | CGGTTAATTGACTTTGTATA+TGG | + | chr1_4:15028282-15028301 | Msa0152410:intron | 30.0% |
| TGAATTAACATATGGTCAAG+TGG | - | chr1_4:15028317-15028336 | None:intergenic | 30.0% | |
| ACTTGACCATATGTTAATTC+AGG | + | chr1_4:15028316-15028335 | Msa0152410:intron | 30.0% | |
| TTGGGGTATAATTTGACTAT+AGG | + | chr1_4:15028393-15028412 | Msa0152410:intron | 30.0% | |
| !!! | AGCTTTAGTTTTAGTTGCAA+GGG | - | chr1_4:15028462-15028481 | None:intergenic | 30.0% |
| TTGCAACTAAAACTAAAGCT+GGG | + | chr1_4:15028462-15028481 | Msa0152410:CDS | 30.0% | |
| TTGAATTCACACTCTGATTT+AGG | + | chr1_4:15026698-15026717 | Msa0152410:intron | 30.0% | |
| TGAATTCACACTCTGATTTA+GGG | + | chr1_4:15026699-15026718 | Msa0152410:intron | 30.0% | |
| GTTAAAGCAATCTGATGAAT+CGG | + | chr1_4:15026792-15026811 | Msa0152410:intron | 30.0% | |
| AACAAGAAAATATTGCAGCA+AGG | + | chr1_4:15026921-15026940 | Msa0152410:intron | 30.0% | |
| ACAAGAAAATATTGCAGCAA+GGG | + | chr1_4:15026922-15026941 | Msa0152410:intron | 30.0% | |
| ATTGGTCCTGATAAAACATA+CGG | + | chr1_4:15027134-15027153 | Msa0152410:intron | 30.0% | |
| ! | TTTTTGGATGCTTTTAGACA+TGG | + | chr1_4:15027190-15027209 | Msa0152410:intron | 30.0% |
| !! | GGATTTGTTATAACGTGTTA+TGG | + | chr1_4:15027211-15027230 | Msa0152410:intron | 30.0% |
| CATGAATTGCCAATTTGAAA+TGG | + | chr1_4:15027291-15027310 | Msa0152410:intron | 30.0% | |
| ATATACATTGAGGATAGACT+TGG | - | chr1_4:15027833-15027852 | None:intergenic | 30.0% | |
| !! | TTTTAGCACTGAAACAAGTT+TGG | - | chr1_4:15028093-15028112 | None:intergenic | 30.0% |
| ACCTTCATTCTGATTTATGT+AGG | + | chr1_4:15028120-15028139 | Msa0152410:intron | 30.0% | |
| TCCTACATAAATCAGAATGA+AGG | - | chr1_4:15028124-15028143 | None:intergenic | 30.0% | |
| ! | CGGTTAATTGACTTTGTATA+TGG | + | chr1_4:15028282-15028301 | Msa0152410:intron | 30.0% |
| TGAATTAACATATGGTCAAG+TGG | - | chr1_4:15028317-15028336 | None:intergenic | 30.0% | |
| ACTTGACCATATGTTAATTC+AGG | + | chr1_4:15028316-15028335 | Msa0152410:intron | 30.0% | |
| TTGGGGTATAATTTGACTAT+AGG | + | chr1_4:15028393-15028412 | Msa0152410:intron | 30.0% | |
| !!! | AGCTTTAGTTTTAGTTGCAA+GGG | - | chr1_4:15028462-15028481 | None:intergenic | 30.0% |
| TTGCAACTAAAACTAAAGCT+GGG | + | chr1_4:15028462-15028481 | Msa0152410:CDS | 30.0% | |
| !! | GTTGTTGTTTGTGTAGAGAA+AGG | + | chr1_4:15026553-15026572 | Msa0152410:five_prime_UTR | 35.0% |
| TGTTGCTAGAAAAGTTCAGA+AGG | + | chr1_4:15026596-15026615 | Msa0152410:CDS | 35.0% | |
| TCAGAGTGTGAATTCAAAGA+TGG | - | chr1_4:15026695-15026714 | None:intergenic | 35.0% | |
| !! | TAGACTATGAAGCATTGACA+CGG | - | chr1_4:15026963-15026982 | None:intergenic | 35.0% |
| !!! | CATTTGTTTTGGTTTGACGT+TGG | + | chr1_4:15027037-15027056 | Msa0152410:intron | 35.0% |
| ATAACGTGTTATGGCATAAG+TGG | + | chr1_4:15027220-15027239 | Msa0152410:intron | 35.0% | |
| TGTTATGGCATAAGTGGAAA+AGG | + | chr1_4:15027226-15027245 | Msa0152410:intron | 35.0% | |
| CCACAACTACCATTTCAAAT+TGG | - | chr1_4:15027303-15027322 | None:intergenic | 35.0% | |
| ! | CCAATTTGAAATGGTAGTTG+TGG | + | chr1_4:15027300-15027319 | Msa0152410:intron | 35.0% |
| TTGAATTGTCTCTGTGATGA+TGG | - | chr1_4:15027399-15027418 | None:intergenic | 35.0% | |
| AGAGACAATTCAAGTGCTAA+AGG | + | chr1_4:15027406-15027425 | Msa0152410:CDS | 35.0% | |
| AAGTAAGGAAAAGGTTGCAT+AGG | - | chr1_4:15027785-15027804 | None:intergenic | 35.0% | |
| ! | ATGCAACCTTTTCCTTACTT+TGG | + | chr1_4:15027785-15027804 | Msa0152410:CDS | 35.0% |
| TGGTTTCCAAAGTAAGGAAA+AGG | - | chr1_4:15027794-15027813 | None:intergenic | 35.0% | |
| !!! | GGATTTTGGTTTCCAAAGTA+AGG | - | chr1_4:15027800-15027819 | None:intergenic | 35.0% |
| ! | TACTTTGGAAACCAAAATCC+TGG | + | chr1_4:15027800-15027819 | Msa0152410:CDS | 35.0% |
| ! | TTGGAATATGACCAGGATTT+TGG | - | chr1_4:15027814-15027833 | None:intergenic | 35.0% |
| CTCAATGTATATTCCGTTCT+CGG | + | chr1_4:15027841-15027860 | Msa0152410:CDS | 35.0% | |
| !! | AAAGTCAATTAACCGGCTTT+TGG | - | chr1_4:15028277-15028296 | None:intergenic | 35.0% |
| TTCCAATTCATGGTTTATCC+TGG | + | chr1_4:15028368-15028387 | Msa0152410:intron | 35.0% | |
| !!! | GCTTTAGTTTTAGTTGCAAG+GGG | - | chr1_4:15028461-15028480 | None:intergenic | 35.0% |
| !!! | CAGCTTTAGTTTTAGTTGCA+AGG | - | chr1_4:15028463-15028482 | None:intergenic | 35.0% |
| CTTGCAACTAAAACTAAAGC+TGG | + | chr1_4:15028461-15028480 | Msa0152410:CDS | 35.0% | |
| !! | GTTGTTGTTTGTGTAGAGAA+AGG | + | chr1_4:15026553-15026572 | Msa0152410:five_prime_UTR | 35.0% |
| TGTTGCTAGAAAAGTTCAGA+AGG | + | chr1_4:15026596-15026615 | Msa0152410:CDS | 35.0% | |
| TCAGAGTGTGAATTCAAAGA+TGG | - | chr1_4:15026695-15026714 | None:intergenic | 35.0% | |
| !! | TAGACTATGAAGCATTGACA+CGG | - | chr1_4:15026963-15026982 | None:intergenic | 35.0% |
| !!! | CATTTGTTTTGGTTTGACGT+TGG | + | chr1_4:15027037-15027056 | Msa0152410:intron | 35.0% |
| ATAACGTGTTATGGCATAAG+TGG | + | chr1_4:15027220-15027239 | Msa0152410:intron | 35.0% | |
| TGTTATGGCATAAGTGGAAA+AGG | + | chr1_4:15027226-15027245 | Msa0152410:intron | 35.0% | |
| CCACAACTACCATTTCAAAT+TGG | - | chr1_4:15027303-15027322 | None:intergenic | 35.0% | |
| ! | CCAATTTGAAATGGTAGTTG+TGG | + | chr1_4:15027300-15027319 | Msa0152410:intron | 35.0% |
| TTGAATTGTCTCTGTGATGA+TGG | - | chr1_4:15027399-15027418 | None:intergenic | 35.0% | |
| AGAGACAATTCAAGTGCTAA+AGG | + | chr1_4:15027406-15027425 | Msa0152410:CDS | 35.0% | |
| AAGTAAGGAAAAGGTTGCAT+AGG | - | chr1_4:15027785-15027804 | None:intergenic | 35.0% | |
| ! | ATGCAACCTTTTCCTTACTT+TGG | + | chr1_4:15027785-15027804 | Msa0152410:CDS | 35.0% |
| TGGTTTCCAAAGTAAGGAAA+AGG | - | chr1_4:15027794-15027813 | None:intergenic | 35.0% | |
| !!! | GGATTTTGGTTTCCAAAGTA+AGG | - | chr1_4:15027800-15027819 | None:intergenic | 35.0% |
| ! | TACTTTGGAAACCAAAATCC+TGG | + | chr1_4:15027800-15027819 | Msa0152410:CDS | 35.0% |
| ! | TTGGAATATGACCAGGATTT+TGG | - | chr1_4:15027814-15027833 | None:intergenic | 35.0% |
| CTCAATGTATATTCCGTTCT+CGG | + | chr1_4:15027841-15027860 | Msa0152410:CDS | 35.0% | |
| !! | AAAGTCAATTAACCGGCTTT+TGG | - | chr1_4:15028277-15028296 | None:intergenic | 35.0% |
| TTCCAATTCATGGTTTATCC+TGG | + | chr1_4:15028368-15028387 | Msa0152410:intron | 35.0% | |
| !!! | GCTTTAGTTTTAGTTGCAAG+GGG | - | chr1_4:15028461-15028480 | None:intergenic | 35.0% |
| !!! | CAGCTTTAGTTTTAGTTGCA+AGG | - | chr1_4:15028463-15028482 | None:intergenic | 35.0% |
| CTTGCAACTAAAACTAAAGC+TGG | + | chr1_4:15028461-15028480 | Msa0152410:CDS | 35.0% | |
| CATCAATTGGGAAACGTCAT+AGG | + | chr1_4:15026663-15026682 | Msa0152410:CDS | 40.0% | |
| AATTGGGAAACGTCATAGGT+AGG | + | chr1_4:15026667-15026686 | Msa0152410:intron | 40.0% | |
| AACTTGATTCTCGCATCACT+AGG | + | chr1_4:15027061-15027080 | Msa0152410:intron | 40.0% | |
| GTCCTGATAAAACATACGGA+CGG | + | chr1_4:15027138-15027157 | Msa0152410:intron | 40.0% | |
| ! | AGTCTCTAGGTCTCTGTTTT+TGG | + | chr1_4:15027174-15027193 | Msa0152410:intron | 40.0% |
| TTCGCTTGACTCTTCAGAAA+GGG | - | chr1_4:15027474-15027493 | None:intergenic | 40.0% | |
| GGCTACTCATGACAATAGAA+TGG | - | chr1_4:15027697-15027716 | None:intergenic | 40.0% | |
| TAGGAACGGGGTATGTATAA+GGG | - | chr1_4:15027718-15027737 | None:intergenic | 40.0% | |
| ATAGGAACGGGGTATGTATA+AGG | - | chr1_4:15027719-15027738 | None:intergenic | 40.0% | |
| TAAGGAAAAGGTTGCATAGG+TGG | - | chr1_4:15027782-15027801 | None:intergenic | 40.0% | |
| GATAGACTTGGAATATGACC+AGG | - | chr1_4:15027821-15027840 | None:intergenic | 40.0% | |
| CGAGAACGGAATATACATTG+AGG | - | chr1_4:15027843-15027862 | None:intergenic | 40.0% | |
| ! | CTCTTTTCGACTAAACACGT+GGG | - | chr1_4:15027918-15027937 | None:intergenic | 40.0% |
| ! | ACTCTTTTCGACTAAACACG+TGG | - | chr1_4:15027919-15027938 | None:intergenic | 40.0% |
| CTACATCTTTCTGCATCACT+AGG | - | chr1_4:15027974-15027993 | None:intergenic | 40.0% | |
| ATGTAGGATTGCACATCAAG+AGG | + | chr1_4:15028136-15028155 | Msa0152410:intron | 40.0% | |
| TGTAGGATTGCACATCAAGA+GGG | + | chr1_4:15028137-15028156 | Msa0152410:intron | 40.0% | |
| TTGCACATCAAGAGGGAAAA+AGG | + | chr1_4:15028144-15028163 | Msa0152410:intron | 40.0% | |
| ! | AGGGAAAAAGGCAAAGCATT+CGG | + | chr1_4:15028156-15028175 | Msa0152410:intron | 40.0% |
| GACCAGGATAAACCATGAAT+TGG | - | chr1_4:15028373-15028392 | None:intergenic | 40.0% | |
| TTCATGGTTTATCCTGGTCT+TGG | + | chr1_4:15028374-15028393 | Msa0152410:intron | 40.0% | |
| ! | TCATGGTTTATCCTGGTCTT+GGG | + | chr1_4:15028375-15028394 | Msa0152410:intron | 40.0% |
| TCAAATTATACCCCAAGACC+AGG | - | chr1_4:15028389-15028408 | None:intergenic | 40.0% | |
| CATCAATTGGGAAACGTCAT+AGG | + | chr1_4:15026663-15026682 | Msa0152410:CDS | 40.0% | |
| AATTGGGAAACGTCATAGGT+AGG | + | chr1_4:15026667-15026686 | Msa0152410:intron | 40.0% | |
| AACTTGATTCTCGCATCACT+AGG | + | chr1_4:15027061-15027080 | Msa0152410:intron | 40.0% | |
| GTCCTGATAAAACATACGGA+CGG | + | chr1_4:15027138-15027157 | Msa0152410:intron | 40.0% | |
| ! | AGTCTCTAGGTCTCTGTTTT+TGG | + | chr1_4:15027174-15027193 | Msa0152410:intron | 40.0% |
| TTCGCTTGACTCTTCAGAAA+GGG | - | chr1_4:15027474-15027493 | None:intergenic | 40.0% | |
| GGCTACTCATGACAATAGAA+TGG | - | chr1_4:15027697-15027716 | None:intergenic | 40.0% | |
| TAGGAACGGGGTATGTATAA+GGG | - | chr1_4:15027718-15027737 | None:intergenic | 40.0% | |
| ATAGGAACGGGGTATGTATA+AGG | - | chr1_4:15027719-15027738 | None:intergenic | 40.0% | |
| TAAGGAAAAGGTTGCATAGG+TGG | - | chr1_4:15027782-15027801 | None:intergenic | 40.0% | |
| GATAGACTTGGAATATGACC+AGG | - | chr1_4:15027821-15027840 | None:intergenic | 40.0% | |
| CGAGAACGGAATATACATTG+AGG | - | chr1_4:15027843-15027862 | None:intergenic | 40.0% | |
| ! | CTCTTTTCGACTAAACACGT+GGG | - | chr1_4:15027918-15027937 | None:intergenic | 40.0% |
| ! | ACTCTTTTCGACTAAACACG+TGG | - | chr1_4:15027919-15027938 | None:intergenic | 40.0% |
| CTACATCTTTCTGCATCACT+AGG | - | chr1_4:15027974-15027993 | None:intergenic | 40.0% | |
| ATGTAGGATTGCACATCAAG+AGG | + | chr1_4:15028136-15028155 | Msa0152410:intron | 40.0% | |
| TGTAGGATTGCACATCAAGA+GGG | + | chr1_4:15028137-15028156 | Msa0152410:intron | 40.0% | |
| TTGCACATCAAGAGGGAAAA+AGG | + | chr1_4:15028144-15028163 | Msa0152410:intron | 40.0% | |
| ! | AGGGAAAAAGGCAAAGCATT+CGG | + | chr1_4:15028156-15028175 | Msa0152410:intron | 40.0% |
| GACCAGGATAAACCATGAAT+TGG | - | chr1_4:15028373-15028392 | None:intergenic | 40.0% | |
| TTCATGGTTTATCCTGGTCT+TGG | + | chr1_4:15028374-15028393 | Msa0152410:intron | 40.0% | |
| ! | TCATGGTTTATCCTGGTCTT+GGG | + | chr1_4:15028375-15028394 | Msa0152410:intron | 40.0% |
| TCAAATTATACCCCAAGACC+AGG | - | chr1_4:15028389-15028408 | None:intergenic | 40.0% | |
| GTGTAGAGAAAGGAGTGAGA+TGG | + | chr1_4:15026563-15026582 | Msa0152410:exon | 45.0% | |
| TGACCGTGAGAAAATCAGGA+GGG | + | chr1_4:15026620-15026639 | Msa0152410:CDS | 45.0% | |
| ! | GATCCCTCCTGATTTTCTCA+CGG | - | chr1_4:15026626-15026645 | None:intergenic | 45.0% |
| !! | GTAATCTGTTTTGTTGGGCC+AGG | - | chr1_4:15026823-15026842 | None:intergenic | 45.0% |
| !! | CTATGAAGCATTGACACGGA+CGG | - | chr1_4:15026959-15026978 | None:intergenic | 45.0% |
| ! | CTCCGTCCGTATGTTTTATC+AGG | - | chr1_4:15027143-15027162 | None:intergenic | 45.0% |
| CTGATAAAACATACGGACGG+AGG | + | chr1_4:15027141-15027160 | Msa0152410:intron | 45.0% | |
| AGGAGACCTATTCAGTCTCT+AGG | + | chr1_4:15027161-15027180 | Msa0152410:intron | 45.0% | |
| CAGAGACCTAGAGACTGAAT+AGG | - | chr1_4:15027170-15027189 | None:intergenic | 45.0% | |
| ATGCAGATCCTGATAGACCA+CGG | + | chr1_4:15027360-15027379 | Msa0152410:intron | 45.0% | |
| TTATCGTTCCGTGGTCTATC+AGG | - | chr1_4:15027371-15027390 | None:intergenic | 45.0% | |
| TGATAGACCACGGAACGATA+AGG | + | chr1_4:15027370-15027389 | Msa0152410:CDS | 45.0% | |
| CTTCGCTTGACTCTTCAGAA+AGG | - | chr1_4:15027475-15027494 | None:intergenic | 45.0% | |
| CTGAAGAGTCAAGCGAAGTA+AGG | + | chr1_4:15027477-15027496 | Msa0152410:intron | 45.0% | |
| GAATGGTCAATTGCAGTCCA+TGG | - | chr1_4:15027680-15027699 | None:intergenic | 45.0% | |
| !! | ATTGGCATTGGCATAGGAAC+GGG | - | chr1_4:15027731-15027750 | None:intergenic | 45.0% |
| !! | GATTGGCATTGGCATAGGAA+CGG | - | chr1_4:15027732-15027751 | None:intergenic | 45.0% |
| GAAAAGGTTGCATAGGTGGT+GGG | - | chr1_4:15027778-15027797 | None:intergenic | 45.0% | |
| ATCTCTATTGGAGGGATAGC+TGG | - | chr1_4:15027869-15027888 | None:intergenic | 45.0% | |
| CTGATGGCATCTCTATTGGA+GGG | - | chr1_4:15027877-15027896 | None:intergenic | 45.0% | |
| TGAGCTGATGGCATCTCTAT+TGG | - | chr1_4:15027881-15027900 | None:intergenic | 45.0% | |
| GTAGAAGGATACTGAGCTGA+TGG | - | chr1_4:15027893-15027912 | None:intergenic | 45.0% | |
| CTAAACACGTGGGATGTAGA+AGG | - | chr1_4:15027908-15027927 | None:intergenic | 45.0% | |
| CTAGGTCTTCTTCTATGACC+CGG | - | chr1_4:15027956-15027975 | None:intergenic | 45.0% | |
| ATGTAGTGTGTCTCCAGATG+TGG | + | chr1_4:15027988-15028007 | Msa0152410:intron | 45.0% | |
| ! | ACCTGTTGTGTTGTTGATCC+AGG | - | chr1_4:15028037-15028056 | None:intergenic | 45.0% |
| AGCCAGTATTCTGCATCTCA+GGG | + | chr1_4:15028217-15028236 | Msa0152410:intron | 45.0% | |
| !! | CATGGTTTATCCTGGTCTTG+GGG | + | chr1_4:15028376-15028395 | Msa0152410:intron | 45.0% |
| TGAGTTTCGCTTCTGCAACT+TGG | + | chr1_4:15028492-15028511 | Msa0152410:CDS | 45.0% | |
| GAGTTTCGCTTCTGCAACTT+GGG | + | chr1_4:15028493-15028512 | Msa0152410:CDS | 45.0% | |
| GTGTAGAGAAAGGAGTGAGA+TGG | + | chr1_4:15026563-15026582 | Msa0152410:exon | 45.0% | |
| TGACCGTGAGAAAATCAGGA+GGG | + | chr1_4:15026620-15026639 | Msa0152410:CDS | 45.0% | |
| ! | GATCCCTCCTGATTTTCTCA+CGG | - | chr1_4:15026626-15026645 | None:intergenic | 45.0% |
| !! | GTAATCTGTTTTGTTGGGCC+AGG | - | chr1_4:15026823-15026842 | None:intergenic | 45.0% |
| !! | CTATGAAGCATTGACACGGA+CGG | - | chr1_4:15026959-15026978 | None:intergenic | 45.0% |
| ! | CTCCGTCCGTATGTTTTATC+AGG | - | chr1_4:15027143-15027162 | None:intergenic | 45.0% |
| CTGATAAAACATACGGACGG+AGG | + | chr1_4:15027141-15027160 | Msa0152410:intron | 45.0% | |
| AGGAGACCTATTCAGTCTCT+AGG | + | chr1_4:15027161-15027180 | Msa0152410:intron | 45.0% | |
| CAGAGACCTAGAGACTGAAT+AGG | - | chr1_4:15027170-15027189 | None:intergenic | 45.0% | |
| ATGCAGATCCTGATAGACCA+CGG | + | chr1_4:15027360-15027379 | Msa0152410:intron | 45.0% | |
| TTATCGTTCCGTGGTCTATC+AGG | - | chr1_4:15027371-15027390 | None:intergenic | 45.0% | |
| TGATAGACCACGGAACGATA+AGG | + | chr1_4:15027370-15027389 | Msa0152410:CDS | 45.0% | |
| CTTCGCTTGACTCTTCAGAA+AGG | - | chr1_4:15027475-15027494 | None:intergenic | 45.0% | |
| CTGAAGAGTCAAGCGAAGTA+AGG | + | chr1_4:15027477-15027496 | Msa0152410:intron | 45.0% | |
| GAATGGTCAATTGCAGTCCA+TGG | - | chr1_4:15027680-15027699 | None:intergenic | 45.0% | |
| !! | ATTGGCATTGGCATAGGAAC+GGG | - | chr1_4:15027731-15027750 | None:intergenic | 45.0% |
| !! | GATTGGCATTGGCATAGGAA+CGG | - | chr1_4:15027732-15027751 | None:intergenic | 45.0% |
| GAAAAGGTTGCATAGGTGGT+GGG | - | chr1_4:15027778-15027797 | None:intergenic | 45.0% | |
| ATCTCTATTGGAGGGATAGC+TGG | - | chr1_4:15027869-15027888 | None:intergenic | 45.0% | |
| CTGATGGCATCTCTATTGGA+GGG | - | chr1_4:15027877-15027896 | None:intergenic | 45.0% | |
| TGAGCTGATGGCATCTCTAT+TGG | - | chr1_4:15027881-15027900 | None:intergenic | 45.0% | |
| GTAGAAGGATACTGAGCTGA+TGG | - | chr1_4:15027893-15027912 | None:intergenic | 45.0% | |
| CTAAACACGTGGGATGTAGA+AGG | - | chr1_4:15027908-15027927 | None:intergenic | 45.0% | |
| CTAGGTCTTCTTCTATGACC+CGG | - | chr1_4:15027956-15027975 | None:intergenic | 45.0% | |
| ATGTAGTGTGTCTCCAGATG+TGG | + | chr1_4:15027988-15028007 | Msa0152410:intron | 45.0% | |
| ! | ACCTGTTGTGTTGTTGATCC+AGG | - | chr1_4:15028037-15028056 | None:intergenic | 45.0% |
| AGCCAGTATTCTGCATCTCA+GGG | + | chr1_4:15028217-15028236 | Msa0152410:intron | 45.0% | |
| !! | CATGGTTTATCCTGGTCTTG+GGG | + | chr1_4:15028376-15028395 | Msa0152410:intron | 45.0% |
| TGAGTTTCGCTTCTGCAACT+TGG | + | chr1_4:15028492-15028511 | Msa0152410:CDS | 45.0% | |
| GAGTTTCGCTTCTGCAACTT+GGG | + | chr1_4:15028493-15028512 | Msa0152410:CDS | 45.0% | |
| AGGCTGACCGTGAGAAAATC+AGG | + | chr1_4:15026616-15026635 | Msa0152410:CDS | 50.0% | |
| CTGACCGTGAGAAAATCAGG+AGG | + | chr1_4:15026619-15026638 | Msa0152410:CDS | 50.0% | |
| AGCAATCTGATGAATCGGCC+CGG | + | chr1_4:15026797-15026816 | Msa0152410:intron | 50.0% | |
| ATGGTTGCCTTATCGTTCCG+TGG | - | chr1_4:15027380-15027399 | None:intergenic | 50.0% | |
| TGGTCAATTGCAGTCCATGG+CGG | - | chr1_4:15027677-15027696 | None:intergenic | 50.0% | |
| !! | TTGGCATTGGCATAGGAACG+GGG | - | chr1_4:15027730-15027749 | None:intergenic | 50.0% |
| !! | TTGCATAGGTGGTGGGTGAA+TGG | - | chr1_4:15027771-15027790 | None:intergenic | 50.0% |
| GGAAAAGGTTGCATAGGTGG+TGG | - | chr1_4:15027779-15027798 | None:intergenic | 50.0% | |
| GCTGATGGCATCTCTATTGG+AGG | - | chr1_4:15027878-15027897 | None:intergenic | 50.0% | |
| AGAGTCTCGAAGCAAGTCAC+CGG | + | chr1_4:15027934-15027953 | Msa0152410:intron | 50.0% | |
| TCAAGCTCTGTTGCCACATC+TGG | - | chr1_4:15028004-15028023 | None:intergenic | 50.0% | |
| GAGCTTGAGCTTAAGATGCC+TGG | + | chr1_4:15028016-15028035 | Msa0152410:intron | 50.0% | |
| GCCTGGATCAACAACACAAC+AGG | + | chr1_4:15028033-15028052 | Msa0152410:intron | 50.0% | |
| GAGCCAGTATTCTGCATCTC+AGG | + | chr1_4:15028216-15028235 | Msa0152410:intron | 50.0% | |
| GTCCCTGAGATGCAGAATAC+TGG | - | chr1_4:15028222-15028241 | None:intergenic | 50.0% | |
| !! | TGGAGTGTTGCTGACACTGT+TGG | - | chr1_4:15028257-15028276 | None:intergenic | 50.0% |
| GTCAGCAACACTCCAAAAGC+CGG | + | chr1_4:15028262-15028281 | Msa0152410:intron | 50.0% | |
| AGGCTGACCGTGAGAAAATC+AGG | + | chr1_4:15026616-15026635 | Msa0152410:CDS | 50.0% | |
| CTGACCGTGAGAAAATCAGG+AGG | + | chr1_4:15026619-15026638 | Msa0152410:CDS | 50.0% | |
| AGCAATCTGATGAATCGGCC+CGG | + | chr1_4:15026797-15026816 | Msa0152410:intron | 50.0% | |
| ATGGTTGCCTTATCGTTCCG+TGG | - | chr1_4:15027380-15027399 | None:intergenic | 50.0% | |
| TGGTCAATTGCAGTCCATGG+CGG | - | chr1_4:15027677-15027696 | None:intergenic | 50.0% | |
| !! | TTGGCATTGGCATAGGAACG+GGG | - | chr1_4:15027730-15027749 | None:intergenic | 50.0% |
| !! | TTGCATAGGTGGTGGGTGAA+TGG | - | chr1_4:15027771-15027790 | None:intergenic | 50.0% |
| GGAAAAGGTTGCATAGGTGG+TGG | - | chr1_4:15027779-15027798 | None:intergenic | 50.0% | |
| GCTGATGGCATCTCTATTGG+AGG | - | chr1_4:15027878-15027897 | None:intergenic | 50.0% | |
| AGAGTCTCGAAGCAAGTCAC+CGG | + | chr1_4:15027934-15027953 | Msa0152410:intron | 50.0% | |
| TCAAGCTCTGTTGCCACATC+TGG | - | chr1_4:15028004-15028023 | None:intergenic | 50.0% | |
| GAGCTTGAGCTTAAGATGCC+TGG | + | chr1_4:15028016-15028035 | Msa0152410:intron | 50.0% | |
| GCCTGGATCAACAACACAAC+AGG | + | chr1_4:15028033-15028052 | Msa0152410:intron | 50.0% | |
| GAGCCAGTATTCTGCATCTC+AGG | + | chr1_4:15028216-15028235 | Msa0152410:intron | 50.0% | |
| GTCCCTGAGATGCAGAATAC+TGG | - | chr1_4:15028222-15028241 | None:intergenic | 50.0% | |
| !! | TGGAGTGTTGCTGACACTGT+TGG | - | chr1_4:15028257-15028276 | None:intergenic | 50.0% |
| GTCAGCAACACTCCAAAAGC+CGG | + | chr1_4:15028262-15028281 | Msa0152410:intron | 50.0% | |
| !! | TCTGTTTTGTTGGGCCAGGC+CGG | - | chr1_4:15026819-15026838 | None:intergenic | 55.0% |
| !! | GGAGGGATTGGCATTGGCAT+AGG | - | chr1_4:15027737-15027756 | None:intergenic | 55.0% |
| ATGCCAATGCCAATCCCTCC+TGG | + | chr1_4:15027737-15027756 | Msa0152410:CDS | 55.0% | |
| AATGCCAATCCCTCCTGGTC+CGG | + | chr1_4:15027742-15027761 | Msa0152410:CDS | 55.0% | |
| GAATGGAAACCGGACCAGGA+GGG | - | chr1_4:15027754-15027773 | None:intergenic | 55.0% | |
| TGAATGGAAACCGGACCAGG+AGG | - | chr1_4:15027755-15027774 | None:intergenic | 55.0% | |
| !! | GGTGGTGGGTGAATGGAAAC+CGG | - | chr1_4:15027764-15027783 | None:intergenic | 55.0% |
| GAGTCTCGAAGCAAGTCACC+GGG | + | chr1_4:15027935-15027954 | Msa0152410:intron | 55.0% | |
| !! | TCTGTTTTGTTGGGCCAGGC+CGG | - | chr1_4:15026819-15026838 | None:intergenic | 55.0% |
| !! | GGAGGGATTGGCATTGGCAT+AGG | - | chr1_4:15027737-15027756 | None:intergenic | 55.0% |
| ATGCCAATGCCAATCCCTCC+TGG | + | chr1_4:15027737-15027756 | Msa0152410:CDS | 55.0% | |
| AATGCCAATCCCTCCTGGTC+CGG | + | chr1_4:15027742-15027761 | Msa0152410:CDS | 55.0% | |
| GAATGGAAACCGGACCAGGA+GGG | - | chr1_4:15027754-15027773 | None:intergenic | 55.0% | |
| TGAATGGAAACCGGACCAGG+AGG | - | chr1_4:15027755-15027774 | None:intergenic | 55.0% | |
| !! | GGTGGTGGGTGAATGGAAAC+CGG | - | chr1_4:15027764-15027783 | None:intergenic | 55.0% |
| GAGTCTCGAAGCAAGTCACC+GGG | + | chr1_4:15027935-15027954 | Msa0152410:intron | 55.0% | |
| !! | CTGTTTTGTTGGGCCAGGCC+GGG | - | chr1_4:15026818-15026837 | None:intergenic | 60.0% |
| GACTCAGAGTCATGCCGCCA+TGG | + | chr1_4:15027660-15027679 | Msa0152410:CDS | 60.0% | |
| ! | GGACCAGGAGGGATTGGCAT+TGG | - | chr1_4:15027743-15027762 | None:intergenic | 60.0% |
| GAAACCGGACCAGGAGGGAT+TGG | - | chr1_4:15027749-15027768 | None:intergenic | 60.0% | |
| GGGTGAATGGAAACCGGACC+AGG | - | chr1_4:15027758-15027777 | None:intergenic | 60.0% | |
| GGGATAGCTGGAGCCGAGAA+CGG | - | chr1_4:15027857-15027876 | None:intergenic | 60.0% | |
| !! | CTGTTTTGTTGGGCCAGGCC+GGG | - | chr1_4:15026818-15026837 | None:intergenic | 60.0% |
| GACTCAGAGTCATGCCGCCA+TGG | + | chr1_4:15027660-15027679 | Msa0152410:CDS | 60.0% | |
| ! | GGACCAGGAGGGATTGGCAT+TGG | - | chr1_4:15027743-15027762 | None:intergenic | 60.0% |
| GAAACCGGACCAGGAGGGAT+TGG | - | chr1_4:15027749-15027768 | None:intergenic | 60.0% | |
| GGGTGAATGGAAACCGGACC+AGG | - | chr1_4:15027758-15027777 | None:intergenic | 60.0% | |
| GGGATAGCTGGAGCCGAGAA+CGG | - | chr1_4:15027857-15027876 | None:intergenic | 60.0% | |
| TCTGATGAATCGGCCCGGCC+TGG | + | chr1_4:15026802-15026821 | Msa0152410:intron | 65.0% | |
| TCTGATGAATCGGCCCGGCC+TGG | + | chr1_4:15026802-15026821 | Msa0152410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15026521 | 15028526 | 15026521 | ID=Msa0152410;Name=Msa0152410 |
| chr1_4 | mRNA | 15026521 | 15028526 | 15026521 | ID=Msa0152410-mRNA-1;Parent=Msa0152410;Name=Msa0152410-mRNA-1;_AED=0.27;_eAED=0.27;_QI=61|0.66|0.5|1|0.66|0.5|4|0|222 |
| chr1_4 | exon | 15026521 | 15026684 | 15026521 | ID=Msa0152410-mRNA-1:exon:5916;Parent=Msa0152410-mRNA-1 |
| chr1_4 | exon | 15027366 | 15027493 | 15027366 | ID=Msa0152410-mRNA-1:exon:5917;Parent=Msa0152410-mRNA-1 |
| chr1_4 | exon | 15027575 | 15027900 | 15027575 | ID=Msa0152410-mRNA-1:exon:5918;Parent=Msa0152410-mRNA-1 |
| chr1_4 | exon | 15028415 | 15028526 | 15028415 | ID=Msa0152410-mRNA-1:exon:5919;Parent=Msa0152410-mRNA-1 |
| chr1_4 | five_prime_UTR | 15026521 | 15026581 | 15026521 | ID=Msa0152410-mRNA-1:five_prime_utr;Parent=Msa0152410-mRNA-1 |
| chr1_4 | CDS | 15026582 | 15026684 | 15026582 | ID=Msa0152410-mRNA-1:cds;Parent=Msa0152410-mRNA-1 |
| chr1_4 | CDS | 15027366 | 15027493 | 15027366 | ID=Msa0152410-mRNA-1:cds;Parent=Msa0152410-mRNA-1 |
| chr1_4 | CDS | 15027575 | 15027900 | 15027575 | ID=Msa0152410-mRNA-1:cds;Parent=Msa0152410-mRNA-1 |
| chr1_4 | CDS | 15028415 | 15028526 | 15028415 | ID=Msa0152410-mRNA-1:cds;Parent=Msa0152410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
