AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013250 MtrunA17_Chr1g0162411 87.261 157 20 0 1 157 1 157 4.76e-99 297
Msa0013250 MtrunA17_Chr1g0162411 73.958 96 11 1 154 235 296 391 3.45e-40 144
Msa0013250 MtrunA17_Chr1g0162441 68.824 170 50 2 1 167 1 170 7.61e-76 237
Msa0013250 MtrunA17_Chr1g0162441 63.971 136 32 4 155 275 267 400 3.69e-46 160
Msa0013250 MtrunA17_Chr4g0033961 48.077 156 78 2 5 157 4 159 4.73e-46 160
Msa0013250 MtrunA17_Chr4g0033961 56.204 137 43 4 155 276 263 397 2.26e-40 145
Msa0013250 MtrunA17_Chr5g0429931 35.769 260 126 9 22 267 10 242 2.51e-37 132
Msa0013250 MtrunA17_Chr3g0077451 32.830 265 120 8 21 267 10 234 1.16e-33 122
Msa0013250 MtrunA17_Chr3g0077411 30.000 280 151 5 7 266 262 516 5.74e-33 126
Msa0013250 MtrunA17_Chr3g0077411 30.466 279 133 9 7 272 25 255 5.16e-27 109
Msa0013250 MtrunA17_Chr3g0103181 32.143 280 158 11 7 266 12 279 2.51e-32 120
Msa0013250 MtrunA17_Chr3g0131891 29.568 301 156 7 7 267 19 303 2.02e-31 119
Msa0013250 MtrunA17_Chr3g0103171 29.259 270 157 8 22 266 5 265 1.49e-27 107
Msa0013250 MtrunA17_Chr1g0162421 77.586 58 13 0 21 78 7 64 1.73e-27 101
Msa0013250 MtrunA17_Chr1g0163071 28.013 307 152 9 23 274 2 294 2.79e-27 107
Msa0013250 MtrunA17_Chr3g0077361 30.882 272 127 9 7 264 40 264 5.53e-27 109
Msa0013250 MtrunA17_Chr3g0077361 30.037 273 119 9 7 267 289 501 1.03e-26 108
Msa0013250 MtrunA17_Chr3g0077461 27.757 263 154 5 7 265 237 467 3.69e-26 106
Msa0013250 MtrunA17_Chr3g0077461 30.108 279 138 11 1 272 2 230 2.66e-23 98.6
Msa0013250 MtrunA17_Chr8g0390841 27.419 310 169 11 7 272 39 336 4.91e-26 107
Msa0013250 MtrunA17_Chr7g0233561 28.188 298 174 6 7 267 18 312 3.70e-25 102
Msa0013250 MtrunA17_Chr1g0208771 27.425 299 160 11 22 275 12 298 1.16e-23 99.8
Msa0013250 MtrunA17_Chr4g0009491 31.579 228 116 6 7 222 225 424 4.21e-23 97.8
Msa0013250 MtrunA17_Chr4g0009491 30.252 238 107 8 21 246 11 201 1.46e-21 93.6
Msa0013250 MtrunA17_Chr3g0077421 30.472 233 111 7 51 268 1 197 1.02e-22 92.8
Msa0013250 MtrunA17_Chr3g0077441 30.472 233 111 7 51 268 1 197 1.02e-22 92.8
Msa0013250 MtrunA17_Chr3g0077381 30.734 218 124 4 7 222 247 439 1.67e-21 93.6
Msa0013250 MtrunA17_Chr3g0077381 28.862 246 116 7 21 264 34 222 4.48e-21 92.4
Msa0013250 MtrunA17_Chr3g0103201 28.936 235 116 8 65 266 4 220 2.03e-21 89.7
Msa0013250 MtrunA17_Chr7g0233521 25.368 272 166 7 23 267 2 263 6.41e-20 87.0
Msa0013250 MtrunA17_Chr7g0233531 26.259 278 156 8 23 267 2 263 1.42e-19 86.3
Msa0013250 MtrunA17_Chr5g0419201 37.755 98 61 0 7 104 16 113 2.58e-19 83.6
Msa0013250 MtrunA17_Chr3g0103191 26.840 231 149 6 7 222 12 237 2.35e-18 82.0
Msa0013250 MtrunA17_Chr3g0103151 34.028 144 83 3 7 148 12 145 2.82e-18 79.7
Msa0013250 MtrunA17_Chr7g0233541 26.148 283 167 9 23 267 2 280 5.41e-18 82.0
Msa0013250 MtrunA17_Chr1g0162431 69.811 53 16 0 220 272 5 57 5.99e-18 76.3
Msa0013250 MtrunA17_Chr1g0154161 26.923 286 174 10 7 266 30 306 4.71e-17 79.7
Msa0013250 MtrunA17_Chr7g0233571 37.895 95 59 0 7 101 10 104 4.86e-16 75.1
Msa0013250 MtrunA17_Chr1g0163131 22.184 293 189 7 7 265 18 305 6.23e-15 73.6
Msa0013250 MtrunA17_Chr1g0154151 24.573 293 166 11 23 263 20 309 4.69e-13 68.2
Msa0013250 MtrunA17_Chr1g0163221 24.828 290 188 10 7 271 11 295 9.74e-13 67.4
Msa0013250 MtrunA17_Chr1g0163181 26.230 305 188 11 4 278 6 303 7.46e-12 65.1
Msa0013250 MtrunA17_Chr3g0103161 34.259 108 54 5 173 265 17 122 2.09e-11 60.1
Msa0013250 MtrunA17_Chr1g0154041 29.524 105 73 1 5 109 14 117 4.55e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013250 AT3G18990.1 42.353 340 118 9 5 270 4 339 4.20e-77 238
Msa0013250 AT3G18990.2 42.059 340 119 9 5 270 4 339 8.76e-76 236
Msa0013250 AT1G49480.3 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0013250 AT1G49480.1 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0013250 AT1G49480.2 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0013250 AT4G01580.1 40.196 102 59 1 4 103 27 128 2.76e-20 86.3
Msa0013250 AT3G18960.1 38.542 96 59 0 4 99 27 122 1.15e-18 82.4
Msa0013250 AT3G18960.2 38.542 96 59 0 4 99 27 122 1.61e-18 81.6
Msa0013250 AT1G49475.1 30.534 131 88 2 2 130 29 158 4.24e-13 67.0
Msa0013250 AT3G18960.3 36.905 84 53 0 16 99 2 85 1.02e-12 65.5

Find 91 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTTGAAGGGTGTTTC+AGG 0.187865 1_1:+20519820 Msa0013250:CDS
TAGTATAAATTTGGTGAAAT+TGG 0.196946 1_1:+20514399 Msa0013250:five_prime_UTR
TATCGACTCCTTTGATTTCC+TGG 0.264885 1_1:+20517489 Msa0013250:CDS
AGTATAAATTTGGTGAAATT+GGG 0.280346 1_1:+20514400 Msa0013250:five_prime_UTR
TTTACACAAGAGAACGGTTT+AGG 0.281466 1_1:+20519940 Msa0013250:CDS
ATTCTCTAGTTTATTCAGTT+TGG 0.286188 1_1:+20520161 Msa0013250:three_prime_UTR
CAGTATTTGCCTACCAGATT+TGG 0.288300 1_1:+20519796 Msa0013250:intron
GGACGGAGGTAGTATAAATT+TGG 0.296054 1_1:+20514390 None:intergenic
CTCCTTTGATTTCCTGGATT+CGG 0.304226 1_1:+20517495 Msa0013250:CDS
GTTATATAATATAACATGAT+AGG 0.305465 1_1:-20520409 None:intergenic
CTTCAAATTTGCTCCAAATC+TGG 0.314432 1_1:-20519809 None:intergenic
TCTTGCAGACGCACGTTCAT+AGG 0.341018 1_1:-20519560 None:intergenic
CTATTCCTGGCGGCACCGTC+TGG 0.365680 1_1:+20517230 Msa0013250:CDS
TGCTTAGATTGAAGGGTTGT+TGG 0.371314 1_1:-20514570 None:intergenic
CTGGCGTCTAGGATTGAAAA+AGG 0.378642 1_1:+20517249 Msa0013250:CDS
TTACACAAGAGAACGGTTTA+GGG 0.383205 1_1:+20519941 Msa0013250:CDS
TTGAAAGTTGAAAACTTTGA+AGG 0.393967 1_1:-20514483 None:intergenic
GTCGCAACTGTCACTATTCC+TGG 0.396303 1_1:+20517217 Msa0013250:CDS
TTTATTCAACGCTACTCAAT+TGG 0.396344 1_1:+20517310 Msa0013250:CDS
CTCTTACTTCTGAGTGATCC+TGG 0.418604 1_1:+20520137 Msa0013250:three_prime_UTR
CAAGCTATGTTGCATAGGTA+TGG 0.423542 1_1:-20520505 None:intergenic
AACCCTTCAATCTAAGCAAT+TGG 0.424880 1_1:+20514575 Msa0013250:CDS
GCATTGTGAGAGAATGAGAT+TGG 0.425049 1_1:-20514515 None:intergenic
TTACCAATTGCTTAGATTGA+AGG 0.430305 1_1:-20514578 None:intergenic
TACTTTGTTTCGTCTAAAAG+AGG 0.450484 1_1:+20520020 Msa0013250:CDS
GTGTAAATTCGTACCATCCT+TGG 0.456711 1_1:-20519924 None:intergenic
CATAGAAAGGCTCTTCAGTC+CGG 0.462587 1_1:-20517432 None:intergenic
AGAATGAGCTTGTGGAAAGA+AGG 0.463674 1_1:-20514546 None:intergenic
GGTTTGAAGGTGCCGAATCC+AGG 0.469504 1_1:-20517507 None:intergenic
GTATAAATTTGGTGAAATTG+GGG 0.471331 1_1:+20514401 Msa0013250:five_prime_UTR
AATGCACCAGTAGGGTTTGA+AGG 0.471364 1_1:-20517520 None:intergenic
GATACTTTCTATGTCCATAC+CGG 0.474003 1_1:+20520190 Msa0013250:three_prime_UTR
CAGATTTGGAGCAAATTTGA+AGG 0.476313 1_1:+20519810 Msa0013250:CDS
GTCCATACCGGGTACGCGTA+CGG 0.483203 1_1:+20520202 Msa0013250:three_prime_UTR
GGCGGCACCGTCTGGCGTCT+AGG 0.484238 1_1:+20517238 Msa0013250:CDS
TGCTTTGCAATGCACCAGTA+GGG 0.484811 1_1:-20517528 None:intergenic
TTATATAATATAACATGATA+GGG 0.495380 1_1:-20520408 None:intergenic
CAACGCTACTCAATTGGCAT+TGG 0.496965 1_1:+20517316 Msa0013250:CDS
TGGGTACAGGTACGAGATTA+CGG 0.497721 1_1:-20520485 None:intergenic
AACTTGCAACACTACATCTC+TGG 0.504545 1_1:-20519998 None:intergenic
TACCAATTGCTTAGATTGAA+GGG 0.513266 1_1:-20514577 None:intergenic
AGAGAACGGTTTAGGGGAAG+GGG 0.514068 1_1:+20519948 Msa0013250:CDS
TGTTTCCTCAGAAAATTATC+CGG 0.517233 1_1:-20517175 None:intergenic
TGTCAGATGAAGAAAGAGAA+AGG 0.518068 1_1:+20519596 Msa0013250:CDS
AGACGCCAGACGGTGCCGCC+AGG 0.521079 1_1:-20517235 None:intergenic
TACCGTACGCGTACCCGGTA+TGG 0.521278 1_1:-20520204 None:intergenic
CTAACGCAGTGCTGCAAGTG+AGG 0.521510 1_1:-20520049 None:intergenic
ACAAGACAGTAAGGATTAGT+TGG 0.522215 1_1:-20519646 None:intergenic
TAATTATAGTCTTCATAGAA+AGG 0.526871 1_1:-20517445 None:intergenic
AAGAGAACGGTTTAGGGGAA+GGG 0.530709 1_1:+20519947 Msa0013250:CDS
TTGCAAAGCAAGGATTCTGC+TGG 0.532722 1_1:+20517541 Msa0013250:CDS
CAATCCAAGCTATGTTGCAT+AGG 0.534379 1_1:-20520510 None:intergenic
TTGCTTTGCAATGCACCAGT+AGG 0.535055 1_1:-20517529 None:intergenic
TTTGACTGAAAAGCAGAGAA+GGG 0.535951 1_1:+20514437 Msa0013250:five_prime_UTR
CAAGAGAACGGTTTAGGGGA+AGG 0.536429 1_1:+20519946 Msa0013250:CDS
AGCCATCCACAAAACAAATA+CGG 0.548306 1_1:-20517279 None:intergenic
AGATTTGGAGCAAATTTGAA+GGG 0.548691 1_1:+20519811 Msa0013250:CDS
GTTTGACTGAAAAGCAGAGA+AGG 0.553340 1_1:+20514436 Msa0013250:five_prime_UTR
TCGGCACCTTCAAACCCTAC+TGG 0.554321 1_1:+20517514 Msa0013250:CDS
GTCAGATGAAGAAAGAGAAA+GGG 0.559696 1_1:+20519597 Msa0013250:CDS
AAGAGAAAGGGCAATGAATG+AGG 0.560927 1_1:+20519609 Msa0013250:CDS
CGCAGACTAACAAGACAGTA+AGG 0.562349 1_1:-20519655 None:intergenic
GCTGCCTTGATGACAAAGGC+CGG 0.563135 1_1:+20519890 Msa0013250:CDS
ATGATTCAACAATGAGAAGC+CGG 0.564717 1_1:+20517413 Msa0013250:CDS
AAGCTATGTTGCATAGGTAT+GGG 0.564739 1_1:-20520504 None:intergenic
TATAAATTTGGTGAAATTGG+GGG 0.572057 1_1:+20514402 Msa0013250:five_prime_UTR
TACTATTCACATACGAAGGA+AGG 0.576020 1_1:+20517347 Msa0013250:CDS
TGTTGCATAGGTATGGGTAC+AGG 0.576281 1_1:-20520498 None:intergenic
ACGCCACTGTTTCTCACCAT+CGG 0.581074 1_1:-20519863 None:intergenic
TTGTGGAAAGAAGGAAGAAG+AGG 0.582385 1_1:-20514537 None:intergenic
CAGTTGCGACAGTCGAAAGT+TGG 0.587358 1_1:-20517204 None:intergenic
ATACTTTCTATGTCCATACC+GGG 0.587476 1_1:+20520191 Msa0013250:three_prime_UTR
CATAGTTTAACTCAGTAGTA+CGG 0.587876 1_1:-20517393 None:intergenic
ATTCCGCTTCAGACATCCGA+TGG 0.591154 1_1:+20519847 Msa0013250:CDS
TACTGGTGCATTGCAAAGCA+AGG 0.593014 1_1:+20517531 Msa0013250:CDS
AAATTTGCTCCAAATCTGGT+AGG 0.596789 1_1:-20519805 None:intergenic
TACGAATTTACACAAGAGAA+CGG 0.605728 1_1:+20519934 Msa0013250:CDS
TGAATAAACTAGAGAATACC+AGG 0.606340 1_1:-20520155 None:intergenic
TTTCAATCCTAGACGCCAGA+CGG 0.606617 1_1:-20517245 None:intergenic
TAACGCAGTGCTGCAAGTGA+GGG 0.609733 1_1:-20520048 None:intergenic
TTGTTGGAAGAATGAGCTTG+TGG 0.610517 1_1:-20514554 None:intergenic
TGCCGAATCCAGGAAATCAA+AGG 0.612101 1_1:-20517497 None:intergenic
ACGAGTACCGTACGCGTACC+CGG 0.614617 1_1:-20520209 None:intergenic
TCACCATCGGATGTCTGAAG+CGG 0.621327 1_1:-20519850 None:intergenic
TTGACTGAAAAGCAGAGAAG+GGG 0.640302 1_1:+20514438 Msa0013250:five_prime_UTR
CATCCGATGGTGAGAAACAG+TGG 0.644228 1_1:+20519860 Msa0013250:CDS
GTTCGCTGCCTTGATGACAA+AGG 0.645710 1_1:+20519886 Msa0013250:CDS
TTACTACTATTCACATACGA+AGG 0.656130 1_1:+20517343 Msa0013250:CDS
TACACAAGAGAACGGTTTAG+GGG 0.668422 1_1:+20519942 Msa0013250:CDS
GGGTACGCGTACGGTACTCG+TGG 0.714655 1_1:+20520211 Msa0013250:three_prime_UTR
GCAACTGTCACTATTCCTGG+CGG 0.770854 1_1:+20517220 Msa0013250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTATATTAAATTTT+AGG + chr1_1:20515611-20515630 Msa0013250:intron 0.0%
!! TAATATAATAAAATCTCAAT+TGG - chr1_1:20515605-20515624 None:intergenic 10.0%
!!! TTATATTAAATTTTAGGTTT+TGG + chr1_1:20515617-20515636 Msa0013250:intron 10.0%
!! ATTAAATAAATAAATTGGTT+TGG - chr1_1:20516920-20516939 None:intergenic 10.0%
!! TCTCTATTAAATAAATAAAT+TGG - chr1_1:20516925-20516944 None:intergenic 10.0%
!!! AAAAAAAATAGTTTAAAATG+TGG - chr1_1:20518344-20518363 None:intergenic 10.0%
!!! ACATTTTAAACTATTTTTTT+TGG + chr1_1:20518343-20518362 Msa0013250:intron 10.0%
!!! AATTTTTTGATATTTTTCTT+TGG + chr1_1:20519725-20519744 Msa0013250:intron 10.0%
!! TTATATAATATAACATGATA+GGG - chr1_1:20520411-20520430 None:intergenic 10.0%
!!! TTTTTTTAAAATTAAGATAC+GGG - chr1_1:20520462-20520481 None:intergenic 10.0%
!! AAACAGAATAAAAAAATCAT+GGG - chr1_1:20514845-20514864 None:intergenic 15.0%
!! TAAACAGAATAAAAAAATCA+TGG - chr1_1:20514846-20514865 None:intergenic 15.0%
!!! ATTGAAGTTTATTTTTTGTT+TGG + chr1_1:20515054-20515073 Msa0013250:intron 15.0%
!! AGTGATATGAATTAAAATAT+AGG + chr1_1:20515554-20515573 Msa0013250:intron 15.0%
!! TATGAATTAAAATATAGGAT+TGG + chr1_1:20515559-20515578 Msa0013250:intron 15.0%
!! TTGAAGTTTGAATAAAAATA+TGG + chr1_1:20518938-20518957 Msa0013250:intron 15.0%
!! AAAAAGTTGAAAATTAAAGT+TGG - chr1_1:20520345-20520364 None:intergenic 15.0%
!! GTTATATAATATAACATGAT+AGG - chr1_1:20520412-20520431 None:intergenic 15.0%
!!! TAGTATAAATTTGGTGAAAT+TGG + chr1_1:20514399-20514418 Msa0013250:five_prime_UTR 20.0%
!!! AGTATAAATTTGGTGAAATT+GGG + chr1_1:20514400-20514419 Msa0013250:five_prime_UTR 20.0%
!! AAAACAGAAACAAAAAAACA+TGG - chr1_1:20514653-20514672 None:intergenic 20.0%
!! AAATCCAAACTTTATGAAAA+GGG - chr1_1:20514725-20514744 None:intergenic 20.0%
!! AAAATCCAAACTTTATGAAA+AGG - chr1_1:20514726-20514745 None:intergenic 20.0%
!!! CCTTTTCAATTTCAATTTTA+GGG - chr1_1:20515130-20515149 None:intergenic 20.0%
!!! ACCTTTTCAATTTCAATTTT+AGG - chr1_1:20515131-20515150 None:intergenic 20.0%
!!! TAAATTTTAGGTTTTGGATA+TGG + chr1_1:20515623-20515642 Msa0013250:intron 20.0%
!! AAGAAAAGGAAATTGAAATT+AGG + chr1_1:20515663-20515682 Msa0013250:intron 20.0%
!!! AGTTTATGTCTTTATTTTCA+TGG + chr1_1:20515960-20515979 Msa0013250:intron 20.0%
!! TTGATAGAATTTATTGTCTT+GGG + chr1_1:20516089-20516108 Msa0013250:intron 20.0%
!!! AATATTATTTTCAATTGCAG+AGG + chr1_1:20517149-20517168 Msa0013250:intron 20.0%
!! TAATTATAGTCTTCATAGAA+AGG - chr1_1:20517448-20517467 None:intergenic 20.0%
!!! GACTATAATTATGTTTTTGA+AGG + chr1_1:20517457-20517476 Msa0013250:CDS 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_1:20517913-20517932 Msa0013250:intron 20.0%
!! TGTATAATTAAGAAAGTTGT+TGG - chr1_1:20518504-20518523 None:intergenic 20.0%
!! TTAATTATACAGAGAAAGAA+TGG + chr1_1:20518513-20518532 Msa0013250:intron 20.0%
!!! CATTTTTCAGTAATCAAATT+TGG + chr1_1:20518670-20518689 Msa0013250:intron 20.0%
!! ATTGCTTCTGATAAAAAAAT+TGG - chr1_1:20518808-20518827 None:intergenic 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_1:20517913-20517932 Msa0013250:intron 20.0%
!!! TATTTCACGTTTTCAAATTA+TGG + chr1_1:20517809-20517828 Msa0013250:intron 20.0%
!! CATAGAATAAATAGCAAAAA+TGG - chr1_1:20520241-20520260 None:intergenic 20.0%
!!! CATTTTTGCTATTTATTCTA+TGG + chr1_1:20520239-20520258 Msa0013250:three_prime_UTR 20.0%
!! GTATAAATTTGGTGAAATTG+GGG + chr1_1:20514401-20514420 Msa0013250:five_prime_UTR 25.0%
!! TATAAATTTGGTGAAATTGG+GGG + chr1_1:20514402-20514421 Msa0013250:five_prime_UTR 25.0%
! TTGAAAGTTGAAAACTTTGA+AGG - chr1_1:20514486-20514505 None:intergenic 25.0%
! AGAAACAAAAAAACATGGAA+GGG - chr1_1:20514648-20514667 None:intergenic 25.0%
! AATCCAAACTTTATGAAAAG+GGG - chr1_1:20514724-20514743 None:intergenic 25.0%
!! CATAAAGTTTGGATTTTTGT+TGG + chr1_1:20514729-20514748 Msa0013250:intron 25.0%
!! AACTTGATGATCAAAATCAT+GGG - chr1_1:20514767-20514786 None:intergenic 25.0%
!! AAACTTGATGATCAAAATCA+TGG - chr1_1:20514768-20514787 None:intergenic 25.0%
!!! ATGATTTTGATCATCAAGTT+TGG + chr1_1:20514767-20514786 Msa0013250:intron 25.0%
!!! GATTTTTCAGAAGTTGTATT+TGG + chr1_1:20514934-20514953 Msa0013250:intron 25.0%
! ATCAAAAGAGTCAAATTCTA+GGG - chr1_1:20514980-20514999 None:intergenic 25.0%
! TTTGATCATAACATAACTCA+TGG + chr1_1:20514994-20515013 Msa0013250:intron 25.0%
! CCCTAAAATTGAAATTGAAA+AGG + chr1_1:20515127-20515146 Msa0013250:intron 25.0%
! ATGTGGCAAAAAAACATTAA+GGG + chr1_1:20515277-20515296 Msa0013250:intron 25.0%
!!! GTGTGCTGTTTTAAAAAAAA+AGG + chr1_1:20515475-20515494 Msa0013250:intron 25.0%
!!! CTGTTTTAAAAAAAAAGGAG+AGG + chr1_1:20515480-20515499 Msa0013250:intron 25.0%
! ATTGCATACAGAATAAGAAA+AGG + chr1_1:20515649-20515668 Msa0013250:intron 25.0%
!! ATAACTGTTGCAATTTTTCT+TGG + chr1_1:20516001-20516020 Msa0013250:intron 25.0%
! CTTGATAGAATTTATTGTCT+TGG + chr1_1:20516088-20516107 Msa0013250:intron 25.0%
! TTAATATATGACACAGTGAA+CGG + chr1_1:20516130-20516149 Msa0013250:intron 25.0%
! AAATCCAAGTAGAATTTCAT+AGG - chr1_1:20516168-20516187 None:intergenic 25.0%
! ACGAATTTCCATATTCATAA+CGG + chr1_1:20516323-20516342 Msa0013250:intron 25.0%
! ATTAACTACCGTTATGAATA+TGG - chr1_1:20516334-20516353 None:intergenic 25.0%
! CATTTGGCTAAAAATAAACT+AGG - chr1_1:20516422-20516441 None:intergenic 25.0%
!!! TTATTTTTAGCCAAATGAGA+TGG + chr1_1:20516425-20516444 Msa0013250:intron 25.0%
!!! TTTTTTCCTCTTTTTGATTC+TGG + chr1_1:20517065-20517084 Msa0013250:intron 25.0%
! TATGAGCATTTACTAACATT+TGG + chr1_1:20517120-20517139 Msa0013250:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_1:20517700-20517719 Msa0013250:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_1:20517700-20517719 Msa0013250:intron 25.0%
!! TATTTCACGTTTTCAAACTA+CGG + chr1_1:20518172-20518191 Msa0013250:intron 25.0%
!!! AAACTATTTTTTTTGGCTAC+CGG + chr1_1:20518350-20518369 Msa0013250:intron 25.0%
! TGTGCTCTATTTATTTGATT+TGG - chr1_1:20518641-20518660 None:intergenic 25.0%
! TCAGTAATCAAATTTGGATT+TGG + chr1_1:20518676-20518695 Msa0013250:intron 25.0%
!!! GTTTGAGATTAATGTTCTTT+TGG + chr1_1:20518858-20518877 Msa0013250:intron 25.0%
! AAAACTAAAAACCTGATAAC+CGG - chr1_1:20518987-20519006 None:intergenic 25.0%
!!! GTTTTAAAAAAGTGATGATG+TGG + chr1_1:20519002-20519021 Msa0013250:intron 25.0%
! TCAAACACTCTTTCAATTAT+TGG - chr1_1:20519029-20519048 None:intergenic 25.0%
! AAGAAAACTTCAAGAAAGAA+GGG + chr1_1:20517628-20517647 Msa0013250:intron 25.0%
! ATTGTCATCAGAATAATTTG+TGG + chr1_1:20519463-20519482 Msa0013250:intron 25.0%
!! ATTCTCTAGTTTATTCAGTT+TGG + chr1_1:20520161-20520180 Msa0013250:three_prime_UTR 25.0%
TACCAATTGCTTAGATTGAA+GGG - chr1_1:20514580-20514599 None:intergenic 30.0%
TTACCAATTGCTTAGATTGA+AGG - chr1_1:20514581-20514600 None:intergenic 30.0%
GAAACAAAAAAACATGGAAG+GGG - chr1_1:20514647-20514666 None:intergenic 30.0%
CAGAAACAAAAAAACATGGA+AGG - chr1_1:20514649-20514668 None:intergenic 30.0%
CTTTATGAAAAGGGGAATTA+GGG - chr1_1:20514716-20514735 None:intergenic 30.0%
ACTTTATGAAAAGGGGAATT+AGG - chr1_1:20514717-20514736 None:intergenic 30.0%
! ATTCCCCTTTTCATAAAGTT+TGG + chr1_1:20514718-20514737 Msa0013250:intron 30.0%
!! AATTTGATTCAGTGTTGCTT+AGG + chr1_1:20514905-20514924 Msa0013250:intron 30.0%
GATCAAAAGAGTCAAATTCT+AGG - chr1_1:20514981-20515000 None:intergenic 30.0%
! ACCTGAACTCTTCAATTTTA+TGG - chr1_1:20515203-20515222 None:intergenic 30.0%
!! TAAATGGAGCATTGGTTAAA+TGG - chr1_1:20515231-20515250 None:intergenic 30.0%
CATGTGGCAAAAAAACATTA+AGG + chr1_1:20515276-20515295 Msa0013250:intron 30.0%
!! TATTTGCTATGAACACTTGA+AGG + chr1_1:20516197-20516216 Msa0013250:intron 30.0%
AAGTCAAATACCATCTCATT+TGG - chr1_1:20516438-20516457 None:intergenic 30.0%
!! TTGTGCAATTCTTTGCTTTT+TGG + chr1_1:20516866-20516885 Msa0013250:intron 30.0%
!!! TGTGCAATTCTTTGCTTTTT+GGG + chr1_1:20516867-20516886 Msa0013250:intron 30.0%
TGTTTCCTCAGAAAATTATC+CGG - chr1_1:20517178-20517197 None:intergenic 30.0%
!! GATAATTTTCTGAGGAAACA+CGG + chr1_1:20517178-20517197 Msa0013250:CDS 30.0%
!! ATAATTTTCTGAGGAAACAC+GGG + chr1_1:20517179-20517198 Msa0013250:CDS 30.0%
TTTATTCAACGCTACTCAAT+TGG + chr1_1:20517310-20517329 Msa0013250:CDS 30.0%
TTACTACTATTCACATACGA+AGG + chr1_1:20517343-20517362 Msa0013250:CDS 30.0%
CATAGTTTAACTCAGTAGTA+CGG - chr1_1:20517396-20517415 None:intergenic 30.0%
!!! CCTTATTTTCTTGTCTTTGT+TGG - chr1_1:20517603-20517622 None:intergenic 30.0%
CCAACAAAGACAAGAAAATA+AGG + chr1_1:20517600-20517619 Msa0013250:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_1:20517629-20517648 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_1:20517629-20517648 Msa0013250:intron 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_1:20517922-20517941 Msa0013250:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_1:20517629-20517648 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_1:20517629-20517648 Msa0013250:intron 30.0%
! AGTTTAAAATGTGGATGACT+TGG - chr1_1:20518335-20518354 None:intergenic 30.0%
TCACTGTGTAAGTAAATAAC+CGG - chr1_1:20518372-20518391 None:intergenic 30.0%
! ATTAAGAAAGTTGTTGGTTG+TGG - chr1_1:20518498-20518517 None:intergenic 30.0%
TTTGTGATGTTGAAGCTTAA+TGG - chr1_1:20518562-20518581 None:intergenic 30.0%
AACATCACAAACTTGTCAAA+TGG + chr1_1:20518571-20518590 Msa0013250:intron 30.0%
ACATCACAAACTTGTCAAAT+GGG + chr1_1:20518572-20518591 Msa0013250:intron 30.0%
!!! GCTGTGATATAGGTTTTTTA+TGG + chr1_1:20518733-20518752 Msa0013250:intron 30.0%
GCAGATGAGATAATTAAAGA+TGG + chr1_1:20518755-20518774 Msa0013250:intron 30.0%
! ATTAGTTTCATCATGAGAGA+TGG + chr1_1:20518885-20518904 Msa0013250:intron 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_1:20517922-20517941 Msa0013250:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_1:20517629-20517648 None:intergenic 30.0%
CAAGAAAACTTCAAGAAAGA+AGG + chr1_1:20517627-20517646 Msa0013250:intron 30.0%
TATGCATCCCCTATATAAAT+AGG - chr1_1:20519686-20519705 None:intergenic 30.0%
TTTATATAGGGGATGCATAA+TGG + chr1_1:20519687-20519706 Msa0013250:intron 30.0%
! AGATTTGGAGCAAATTTGAA+GGG + chr1_1:20519811-20519830 Msa0013250:CDS 30.0%
TACGAATTTACACAAGAGAA+CGG + chr1_1:20519934-20519953 Msa0013250:CDS 30.0%
! TACTTTGTTTCGTCTAAAAG+AGG + chr1_1:20520020-20520039 Msa0013250:CDS 30.0%
!! CAGTTTTGTAATTGTCTATC+AGG - chr1_1:20520107-20520126 None:intergenic 30.0%
TGAATAAACTAGAGAATACC+AGG - chr1_1:20520158-20520177 None:intergenic 30.0%
TTTGACTGAAAAGCAGAGAA+GGG + chr1_1:20514437-20514456 Msa0013250:five_prime_UTR 35.0%
AACCCTTCAATCTAAGCAAT+TGG + chr1_1:20514575-20514594 Msa0013250:CDS 35.0%
AGCAATTCAGATACAACTTG+TGG - chr1_1:20515166-20515185 None:intergenic 35.0%
GCCATAAAATTGAAGAGTTC+AGG + chr1_1:20515199-20515218 Msa0013250:intron 35.0%
!! AAATGGACTAAATGGAGCAT+TGG - chr1_1:20515910-20515929 None:intergenic 35.0%
ATGCTCCATTTAGTCCATTT+AGG + chr1_1:20515239-20515258 Msa0013250:intron 35.0%
!! CATGACCTAAATGGACTAAA+TGG - chr1_1:20515902-20515921 None:intergenic 35.0%
CATTTAGTCCATTTAGGTCA+TGG + chr1_1:20515245-20515264 Msa0013250:intron 35.0%
TGTGGCAAAAAATCATCCAA+GGG - chr1_1:20515871-20515890 None:intergenic 35.0%
ATGTGGCAAAAAATCATCCA+AGG - chr1_1:20515872-20515891 None:intergenic 35.0%
TCTTGTATCCATGACCTAAA+TGG + chr1_1:20515893-20515912 Msa0013250:intron 35.0%
CATTTAGTCCATTTAGGTCA+TGG - chr1_1:20515245-20515264 None:intergenic 35.0%
!! CATGACCTAAATGGACTAAA+TGG + chr1_1:20515902-20515921 Msa0013250:intron 35.0%
ATGCTCCATTTAGTCCATTT+AGG - chr1_1:20515239-20515258 None:intergenic 35.0%
ACCTGAACTCAAAATTGAAC+TGG + chr1_1:20515930-20515949 Msa0013250:intron 35.0%
CCTGAACTCAAAATTGAACT+GGG + chr1_1:20515931-20515950 Msa0013250:intron 35.0%
AACTCAAAATTGAACTGGGT+TGG + chr1_1:20515935-20515954 Msa0013250:intron 35.0%
GTGTGCTTGTGTGTTAATTT+CGG + chr1_1:20516475-20516494 Msa0013250:intron 35.0%
TGTGCTTGTGTGTTAATTTC+GGG + chr1_1:20516476-20516495 Msa0013250:intron 35.0%
TGTAGGAATTTGAGGATTTG+CGG - chr1_1:20516549-20516568 None:intergenic 35.0%
TTTGCAGATGTAGGAATTTG+AGG - chr1_1:20516557-20516576 None:intergenic 35.0%
!!! GCTTTTTCATTTGCAGATGT+AGG - chr1_1:20516566-20516585 None:intergenic 35.0%
AATGAAAAAGCTCTTCTCAC+TGG + chr1_1:20516575-20516594 Msa0013250:intron 35.0%
CAGAATTGTGCACAACATTA+CGG - chr1_1:20516753-20516772 None:intergenic 35.0%
!! CTTTTTGGGAGTGAACAATT+GGG + chr1_1:20516881-20516900 Msa0013250:intron 35.0%
!! TTTTTGGGAGTGAACAATTG+GGG + chr1_1:20516882-20516901 Msa0013250:intron 35.0%
!! AAATTGGTTTGGCCTAAGTA+TGG - chr1_1:20516909-20516928 None:intergenic 35.0%
AATGAGCCAGAATCAAAAAG+AGG - chr1_1:20517074-20517093 None:intergenic 35.0%
! TTTTCAATTGCAGAGGATTC+CGG + chr1_1:20517156-20517175 Msa0013250:intron 35.0%
!! TAATTTTCTGAGGAAACACG+GGG + chr1_1:20517180-20517199 Msa0013250:CDS 35.0%
!!! AACCGTATTTGTTTTGTGGA+TGG + chr1_1:20517277-20517296 Msa0013250:CDS 35.0%
AGCCATCCACAAAACAAATA+CGG - chr1_1:20517282-20517301 None:intergenic 35.0%
TACTATTCACATACGAAGGA+AGG + chr1_1:20517347-20517366 Msa0013250:CDS 35.0%
ATGATTCAACAATGAGAAGC+CGG + chr1_1:20517413-20517432 Msa0013250:CDS 35.0%
! TCACGTTTTCAAATTACAGC+TGG + chr1_1:20517813-20517832 Msa0013250:intron 35.0%
!! GGAGGCTTTTGGAAAATTAA+AGG - chr1_1:20518541-20518560 None:intergenic 35.0%
TTCAAAGAACCTGCGTTAAT+TGG + chr1_1:20518598-20518617 Msa0013250:intron 35.0%
TCAAAGAACCTGCGTTAATT+GGG + chr1_1:20518599-20518618 Msa0013250:intron 35.0%
!! AAGCAAACTTGCTGTGATAT+AGG + chr1_1:20518723-20518742 Msa0013250:intron 35.0%
!! GTTTTGTTGAGATTCGATTG+TGG + chr1_1:20518834-20518853 Msa0013250:intron 35.0%
CTCTCATGATGAAACTAATG+AGG - chr1_1:20518884-20518903 None:intergenic 35.0%
TGTTAGTAAACCAGTATAGC+CGG + chr1_1:20518965-20518984 Msa0013250:intron 35.0%
! GCATTGACATTTCAGATTGA+AGG + chr1_1:20519274-20519293 Msa0013250:intron 35.0%
! TCACGTTTTCAAATTATGGC+TGG + chr1_1:20519371-20519390 Msa0013250:intron 35.0%
! AGAATAATTTGTGGAACTGC+AGG + chr1_1:20519472-20519491 Msa0013250:intron 35.0%
TGTCAGATGAAGAAAGAGAA+AGG + chr1_1:20519596-20519615 Msa0013250:CDS 35.0%
GTCAGATGAAGAAAGAGAAA+GGG + chr1_1:20519597-20519616 Msa0013250:CDS 35.0%
! ACAAGACAGTAAGGATTAGT+TGG - chr1_1:20519649-20519668 None:intergenic 35.0%
! AAATTTGCTCCAAATCTGGT+AGG - chr1_1:20519808-20519827 None:intergenic 35.0%
! CTTCAAATTTGCTCCAAATC+TGG - chr1_1:20519812-20519831 None:intergenic 35.0%
! CAGATTTGGAGCAAATTTGA+AGG + chr1_1:20519810-20519829 Msa0013250:CDS 35.0%
!! ATCCTTGGCTTAACTTTTTC+CGG - chr1_1:20519912-20519931 None:intergenic 35.0%
TTTACACAAGAGAACGGTTT+AGG + chr1_1:20519940-20519959 Msa0013250:CDS 35.0%
TTACACAAGAGAACGGTTTA+GGG + chr1_1:20519941-20519960 Msa0013250:CDS 35.0%
AGCTCAACCTAAAAATTAGC+TGG + chr1_1:20520070-20520089 Msa0013250:exon 35.0%
GCTCAACCTAAAAATTAGCT+GGG + chr1_1:20520071-20520090 Msa0013250:exon 35.0%
! AACTCTCCCAGCTAATTTTT+AGG - chr1_1:20520080-20520099 None:intergenic 35.0%
GATACTTTCTATGTCCATAC+CGG + chr1_1:20520190-20520209 Msa0013250:three_prime_UTR 35.0%
ATACTTTCTATGTCCATACC+GGG + chr1_1:20520191-20520210 Msa0013250:three_prime_UTR 35.0%
GTTTGACTGAAAAGCAGAGA+AGG + chr1_1:20514436-20514455 Msa0013250:five_prime_UTR 40.0%
TTGACTGAAAAGCAGAGAAG+GGG + chr1_1:20514438-20514457 Msa0013250:five_prime_UTR 40.0%
GCATTGTGAGAGAATGAGAT+TGG - chr1_1:20514518-20514537 None:intergenic 40.0%
TTGTGGAAAGAAGGAAGAAG+AGG - chr1_1:20514540-20514559 None:intergenic 40.0%
AGAATGAGCTTGTGGAAAGA+AGG - chr1_1:20514549-20514568 None:intergenic 40.0%
TTGTTGGAAGAATGAGCTTG+TGG - chr1_1:20514557-20514576 None:intergenic 40.0%
TGCTTAGATTGAAGGGTTGT+TGG - chr1_1:20514573-20514592 None:intergenic 40.0%
!! AGCGATGGATTGGTATCTTA+CGG - chr1_1:20515424-20515443 None:intergenic 40.0%
TAATACAGTAGCAACAGCGA+TGG - chr1_1:20515439-20515458 None:intergenic 40.0%
CAAGATCGTGATTAGCAAGA+GGG + chr1_1:20515745-20515764 Msa0013250:intron 40.0%
AAGATCGTGATTAGCAAGAG+GGG + chr1_1:20515746-20515765 Msa0013250:intron 40.0%
TAATGTTAAATCCCAGCCCT+TGG + chr1_1:20515852-20515871 Msa0013250:intron 40.0%
CAAAAAATCATCCAAGGGCT+GGG - chr1_1:20515866-20515885 None:intergenic 40.0%
!!! CCCAGTTCAATTTTGAGTTC+AGG - chr1_1:20515934-20515953 None:intergenic 40.0%
GCTGCCTATGAAATTCTACT+TGG + chr1_1:20516161-20516180 Msa0013250:intron 40.0%
CAGGTGCGTTAACTTTAATC+GGG - chr1_1:20516514-20516533 None:intergenic 40.0%
CCAGGTGCGTTAACTTTAAT+CGG - chr1_1:20516515-20516534 None:intergenic 40.0%
CGATTAAAGTTAACGCACCT+GGG + chr1_1:20516513-20516532 Msa0013250:intron 40.0%
GATTAAAGTTAACGCACCTG+GGG + chr1_1:20516514-20516533 Msa0013250:intron 40.0%
GTTCTCTGTTACACGTTCAA+AGG - chr1_1:20516605-20516624 None:intergenic 40.0%
! TTTGTCTGAAACCCCCTATT+TGG + chr1_1:20516811-20516830 Msa0013250:intron 40.0%
! TTGTCTGAAACCCCCTATTT+GGG + chr1_1:20516812-20516831 Msa0013250:intron 40.0%
AAACCATGTGCACCCAAATA+GGG - chr1_1:20516827-20516846 None:intergenic 40.0%
TAAACCATGTGCACCCAAAT+AGG - chr1_1:20516828-20516847 None:intergenic 40.0%
!! GCTTTTTGGGAGTGAACAAT+TGG + chr1_1:20516880-20516899 Msa0013250:intron 40.0%
AACAATTGGGGACCATACTT+AGG + chr1_1:20516894-20516913 Msa0013250:intron 40.0%
! GGATTCCGGATAATTTTCTG+AGG + chr1_1:20517170-20517189 Msa0013250:CDS 40.0%
! CGTCTAGGATTGAAAAAGGT+TGG + chr1_1:20517253-20517272 Msa0013250:CDS 40.0%
!!! TGGCAACCGTATTTGTTTTG+TGG + chr1_1:20517273-20517292 Msa0013250:CDS 40.0%
!!! GTATTTGTTTTGTGGATGGC+TGG + chr1_1:20517281-20517300 Msa0013250:CDS 40.0%
!! TATCGACTCCTTTGATTTCC+TGG + chr1_1:20517489-20517508 Msa0013250:CDS 40.0%
! CTCCTTTGATTTCCTGGATT+CGG + chr1_1:20517495-20517514 Msa0013250:CDS 40.0%
TATGGATCAACTGATACCAG+CGG + chr1_1:20517567-20517586 Msa0013250:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_1:20517716-20517735 Msa0013250:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_1:20517716-20517735 Msa0013250:intron 40.0%
CTCAAAGAGAGAGTGGTTAT+TGG - chr1_1:20518308-20518327 None:intergenic 40.0%
ATAACCACTCTCTCTTTGAG+TGG + chr1_1:20518308-20518327 Msa0013250:intron 40.0%
ACGTTCTCTTTCTCTCTCTT+TGG + chr1_1:20518432-20518451 Msa0013250:intron 40.0%
GAAGACCTTTCAAATGACAG+AGG - chr1_1:20518463-20518482 None:intergenic 40.0%
! TTGTTGGTTGTGGTTAGATG+GGG - chr1_1:20518488-20518507 None:intergenic 40.0%
! GTTGTTGGTTGTGGTTAGAT+GGG - chr1_1:20518489-20518508 None:intergenic 40.0%
! AGTTGTTGGTTGTGGTTAGA+TGG - chr1_1:20518490-20518509 None:intergenic 40.0%
! TGAAGCTTAATGGAGGCTTT+TGG - chr1_1:20518552-20518571 None:intergenic 40.0%
GTGATGTTGAAGCTTAATGG+AGG - chr1_1:20518559-20518578 None:intergenic 40.0%
AGATGAATCCCAATTAACGC+AGG - chr1_1:20518610-20518629 None:intergenic 40.0%
TGCGTTAATTGGGATTCATC+TGG + chr1_1:20518609-20518628 Msa0013250:intron 40.0%
TTTGAGAGAGAGTGATAGAG+AGG + chr1_1:20519044-20519063 Msa0013250:intron 40.0%
CAAGAAAGAAGGGAAAATCG+CGG + chr1_1:20519191-20519210 Msa0013250:intron 40.0%
AAGAGAAAGGGCAATGAATG+AGG + chr1_1:20519609-20519628 Msa0013250:CDS 40.0%
TGCGAGCCTCCTATTTATAT+AGG + chr1_1:20519674-20519693 Msa0013250:intron 40.0%
GCGAGCCTCCTATTTATATA+GGG + chr1_1:20519675-20519694 Msa0013250:intron 40.0%
CGAGCCTCCTATTTATATAG+GGG + chr1_1:20519676-20519695 Msa0013250:intron 40.0%
GCATCCCCTATATAAATAGG+AGG - chr1_1:20519683-20519702 None:intergenic 40.0%
CAAATCTGGTAGGCAAATAC+TGG - chr1_1:20519798-20519817 None:intergenic 40.0%
CAGTATTTGCCTACCAGATT+TGG + chr1_1:20519796-20519815 Msa0013250:intron 40.0%
!! GCAAATTTGAAGGGTGTTTC+AGG + chr1_1:20519820-20519839 Msa0013250:CDS 40.0%
GGAAAAAGTTAAGCCAAGGA+TGG + chr1_1:20519911-20519930 Msa0013250:CDS 40.0%
GTGTAAATTCGTACCATCCT+TGG - chr1_1:20519927-20519946 None:intergenic 40.0%
TACACAAGAGAACGGTTTAG+GGG + chr1_1:20519942-20519961 Msa0013250:CDS 40.0%
AACTTGCAACACTACATCTC+TGG - chr1_1:20520001-20520020 None:intergenic 40.0%
TCTCGCATCCATGACCTAAA+TGG - chr1_1:20515256-20515275 None:intergenic 45.0%
!! GATGGATTGGTATCTTACGG+CGG - chr1_1:20515421-20515440 None:intergenic 45.0%
GCTGCTACTGTTATGTGTCA+AGG - chr1_1:20515698-20515717 None:intergenic 45.0%
CTGTCACTAACCATTCATGG+TGG - chr1_1:20515720-20515739 None:intergenic 45.0%
CCTCTGTCACTAACCATTCA+TGG - chr1_1:20515723-20515742 None:intergenic 45.0%
CCATGAATGGTTAGTGACAG+AGG + chr1_1:20515720-20515739 Msa0013250:intron 45.0%
GCAAGATCGTGATTAGCAAG+AGG + chr1_1:20515744-20515763 Msa0013250:intron 45.0%
GCAAAAAATCATCCAAGGGC+TGG - chr1_1:20515867-20515886 None:intergenic 45.0%
GGTCATGGATACAAGACATG+TGG - chr1_1:20515889-20515908 None:intergenic 45.0%
TGCAGTTGCTTGTAGTGTTC+TGG + chr1_1:20516285-20516304 Msa0013250:intron 45.0%
TTAATTTCGGGCCGAGTACA+TGG + chr1_1:20516488-20516507 Msa0013250:intron 45.0%
CTTTAATCGGGCCATGTACT+CGG - chr1_1:20516502-20516521 None:intergenic 45.0%
CCGATTAAAGTTAACGCACC+TGG + chr1_1:20516512-20516531 Msa0013250:intron 45.0%
GAAGAAAGGATCCGATCACA+GGG - chr1_1:20516640-20516659 None:intergenic 45.0%
ACAGGTAAGTTCCTAGAGCA+AGG - chr1_1:20516682-20516701 None:intergenic 45.0%
ATAAGAACAGCGCACAACAC+AGG - chr1_1:20516700-20516719 None:intergenic 45.0%
TTCTTATGCTCGTTGCCTTG+CGG + chr1_1:20516713-20516732 Msa0013250:intron 45.0%
ACATTACGGCCAAGGATTTC+TGG - chr1_1:20516739-20516758 None:intergenic 45.0%
AACCATGTGCACCCAAATAG+GGG - chr1_1:20516826-20516845 None:intergenic 45.0%
TTTCAATCCTAGACGCCAGA+CGG - chr1_1:20517248-20517267 None:intergenic 45.0%
! CTGGCGTCTAGGATTGAAAA+AGG + chr1_1:20517249-20517268 Msa0013250:CDS 45.0%
CAACGCTACTCAATTGGCAT+TGG + chr1_1:20517316-20517335 Msa0013250:CDS 45.0%
CATAGAAAGGCTCTTCAGTC+CGG - chr1_1:20517435-20517454 None:intergenic 45.0%
TGCCGAATCCAGGAAATCAA+AGG - chr1_1:20517500-20517519 None:intergenic 45.0%
AATGCACCAGTAGGGTTTGA+AGG - chr1_1:20517523-20517542 None:intergenic 45.0%
TGCTTTGCAATGCACCAGTA+GGG - chr1_1:20517531-20517550 None:intergenic 45.0%
TTGCTTTGCAATGCACCAGT+AGG - chr1_1:20517532-20517551 None:intergenic 45.0%
TACTGGTGCATTGCAAAGCA+AGG + chr1_1:20517531-20517550 Msa0013250:CDS 45.0%
TTGCAAAGCAAGGATTCTGC+TGG + chr1_1:20517541-20517560 Msa0013250:CDS 45.0%
CAAGGATTCTGCTGGATGTA+TGG + chr1_1:20517549-20517568 Msa0013250:intron 45.0%
CAAGAAAGAAGCGGAAATCG+CGG + chr1_1:20517638-20517657 Msa0013250:intron 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_1:20517725-20517744 Msa0013250:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_1:20517746-20517765 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_1:20517747-20517766 None:intergenic 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_1:20517954-20517973 Msa0013250:intron 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_1:20517959-20517978 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_1:20517957-20517976 Msa0013250:intron 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_1:20517962-20517981 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_1:20517725-20517744 Msa0013250:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_1:20517746-20517765 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_1:20517747-20517766 None:intergenic 45.0%
TGTTAGTGTCGCATCTGAGT+TGG - chr1_1:20518134-20518153 None:intergenic 45.0%
! TCACGTTTTCAAACTACGGC+TGG + chr1_1:20518176-20518195 Msa0013250:intron 45.0%
! CACCTCCTCTGTCATTTGAA+AGG + chr1_1:20518455-20518474 Msa0013250:intron 45.0%
GACCTTTCAAATGACAGAGG+AGG - chr1_1:20518460-20518479 None:intergenic 45.0%
AACCAGTATAGCCGGTTATC+AGG + chr1_1:20518973-20518992 Msa0013250:intron 45.0%
AACCTGATAACCGGCTATAC+TGG - chr1_1:20518978-20518997 None:intergenic 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_1:20517954-20517973 Msa0013250:intron 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_1:20517959-20517978 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_1:20517957-20517976 Msa0013250:intron 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_1:20517962-20517981 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_1:20517725-20517744 Msa0013250:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_1:20517746-20517765 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_1:20517747-20517766 None:intergenic 45.0%
CGCAGACTAACAAGACAGTA+AGG - chr1_1:20519658-20519677 None:intergenic 45.0%
! TTTTCCGGCCTTTGTCATCA+AGG - chr1_1:20519897-20519916 None:intergenic 45.0%
AAGAGAACGGTTTAGGGGAA+GGG + chr1_1:20519947-20519966 Msa0013250:CDS 45.0%
CTCTTACTTCTGAGTGATCC+TGG + chr1_1:20520137-20520156 Msa0013250:three_prime_UTR 45.0%
TGGGTACAGGTACGAGATTA+CGG - chr1_1:20520488-20520507 None:intergenic 45.0%
!! TATTTAAACTTAAATTAATA+AGG - chr1_1:20516959-20516978 None:intergenic 5.0%
!!! ATTTTTTTAAAATTAAGATA+CGG - chr1_1:20520463-20520482 None:intergenic 5.0%
AGAGGGAAACATGAGGACGA+TGG - chr1_1:20515349-20515368 None:intergenic 50.0%
AGGAGGAAGAGGGAAACATG+AGG - chr1_1:20515356-20515375 None:intergenic 50.0%
! CAAGATGATGATGAGTGGGG+AGG - chr1_1:20515395-20515414 None:intergenic 50.0%
! CGGCAAGATGATGATGAGTG+GGG - chr1_1:20515398-20515417 None:intergenic 50.0%
! GCGGCAAGATGATGATGAGT+GGG - chr1_1:20515399-20515418 None:intergenic 50.0%
CAGTAGCAACAGCGATGGAT+TGG - chr1_1:20515434-20515453 None:intergenic 50.0%
ACAGTAGCAGCCACCATGAA+TGG + chr1_1:20515707-20515726 Msa0013250:intron 50.0%
CTCTTCCTCCTCTGTTCCAA+CGG - chr1_1:20515775-20515794 None:intergenic 50.0%
GTTGGAACAGAGGAGGAAGA+GGG + chr1_1:20515774-20515793 Msa0013250:intron 50.0%
GGAAGAAAGGATCCGATCAC+AGG - chr1_1:20516641-20516660 None:intergenic 50.0%
GGATCCTTTCTTCCCATGAC+TGG + chr1_1:20516647-20516666 Msa0013250:intron 50.0%
GGATCCAGTCATGGGAAGAA+AGG - chr1_1:20516654-20516673 None:intergenic 50.0%
AGGCAGAAGGATCCAGTCAT+GGG - chr1_1:20516662-20516681 None:intergenic 50.0%
AAGGCAGAAGGATCCAGTCA+TGG - chr1_1:20516663-20516682 None:intergenic 50.0%
AGTTCCTAGAGCAAGGCAGA+AGG - chr1_1:20516675-20516694 None:intergenic 50.0%
TGTGCACAACATTACGGCCA+AGG - chr1_1:20516747-20516766 None:intergenic 50.0%
ACCATGTGCACCCAAATAGG+GGG - chr1_1:20516825-20516844 None:intergenic 50.0%
CAGTTGCGACAGTCGAAAGT+TGG - chr1_1:20517207-20517226 None:intergenic 50.0%
GTCGCAACTGTCACTATTCC+TGG + chr1_1:20517217-20517236 Msa0013250:CDS 50.0%
GCAACTGTCACTATTCCTGG+CGG + chr1_1:20517220-20517239 Msa0013250:CDS 50.0%
! TGTTGGCTATGATTCTCCGC+TGG - chr1_1:20517586-20517605 None:intergenic 50.0%
AGATGCGACACTAACACGTG+TGG + chr1_1:20518138-20518157 Msa0013250:intron 50.0%
CAGACACGACACTGAGACAT+TGG - chr1_1:20518204-20518223 None:intergenic 50.0%
ATTAGAGCAGTGCTAGCGTC+AGG + chr1_1:20518268-20518287 Msa0013250:intron 50.0%
TGGTCCACTCAAAGAGAGAG+TGG - chr1_1:20518315-20518334 None:intergenic 50.0%
TCTTGCAGACGCACGTTCAT+AGG - chr1_1:20519563-20519582 None:intergenic 50.0%
ATTCCGCTTCAGACATCCGA+TGG + chr1_1:20519847-20519866 Msa0013250:CDS 50.0%
TCACCATCGGATGTCTGAAG+CGG - chr1_1:20519853-20519872 None:intergenic 50.0%
CATCCGATGGTGAGAAACAG+TGG + chr1_1:20519860-20519879 Msa0013250:CDS 50.0%
! ACGCCACTGTTTCTCACCAT+CGG - chr1_1:20519866-20519885 None:intergenic 50.0%
! GTTCGCTGCCTTGATGACAA+AGG + chr1_1:20519886-20519905 Msa0013250:CDS 50.0%
GGCCGGAAAAAGTTAAGCCA+AGG + chr1_1:20519907-20519926 Msa0013250:CDS 50.0%
CAAGAGAACGGTTTAGGGGA+AGG + chr1_1:20519946-20519965 Msa0013250:CDS 50.0%
AGAGAACGGTTTAGGGGAAG+GGG + chr1_1:20519948-20519967 Msa0013250:CDS 50.0%
TAACGCAGTGCTGCAAGTGA+GGG - chr1_1:20520051-20520070 None:intergenic 50.0%
GGTCATGGATGCGAGACATG+TGG + chr1_1:20515260-20515279 Msa0013250:intron 55.0%
GTCGGAACAGAGGAGGAAGA+GGG - chr1_1:20515366-20515385 None:intergenic 55.0%
AGTCGGAACAGAGGAGGAAG+AGG - chr1_1:20515367-20515386 None:intergenic 55.0%
GTCATGAGTCGGAACAGAGG+AGG - chr1_1:20515373-20515392 None:intergenic 55.0%
GAGGTCATGAGTCGGAACAG+AGG - chr1_1:20515376-20515395 None:intergenic 55.0%
TGAGTGGGGAGGTCATGAGT+CGG - chr1_1:20515384-20515403 None:intergenic 55.0%
! GGCGGCAAGATGATGATGAG+TGG - chr1_1:20515400-20515419 None:intergenic 55.0%
! GGATTGGTATCTTACGGCGG+CGG - chr1_1:20515418-20515437 None:intergenic 55.0%
CGTTGGAACAGAGGAGGAAG+AGG + chr1_1:20515773-20515792 Msa0013250:intron 55.0%
GTTAACGCACCTGGGGTAAG+AGG + chr1_1:20516521-20516540 Msa0013250:intron 55.0%
GATCACAGGGCAGGCAGAAA+GGG - chr1_1:20516627-20516646 None:intergenic 55.0%
CTTTCTGCCTGCCCTGTGAT+CGG + chr1_1:20516626-20516645 Msa0013250:intron 55.0%
AAAGGATCCGATCACAGGGC+AGG - chr1_1:20516636-20516655 None:intergenic 55.0%
GGATCCTTCTGCCTTGCTCT+AGG + chr1_1:20516668-20516687 Msa0013250:intron 55.0%
ACCCCCTATTTGGGTGCACA+TGG + chr1_1:20516821-20516840 Msa0013250:intron 55.0%
!! GGTTTGAAGGTGCCGAATCC+AGG - chr1_1:20517510-20517529 None:intergenic 55.0%
TCGGCACCTTCAAACCCTAC+TGG + chr1_1:20517514-20517533 Msa0013250:CDS 55.0%
TGTCAGTGTCGCGTCTGAGT+TGG - chr1_1:20517771-20517790 None:intergenic 55.0%
CAGACACGACACTGAGACGT+TGG - chr1_1:20517841-20517860 None:intergenic 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_1:20517930-20517949 Msa0013250:intron 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_1:20517930-20517949 Msa0013250:intron 55.0%
AGACGCGACACTAACACGTG+TGG + chr1_1:20519333-20519352 Msa0013250:intron 55.0%
! GCTGCCTTGATGACAAAGGC+CGG + chr1_1:20519890-20519909 Msa0013250:CDS 55.0%
CTAACGCAGTGCTGCAAGTG+AGG - chr1_1:20520052-20520071 None:intergenic 55.0%
TTAGCAAGAGGGGCAGCCGT+TGG + chr1_1:20515756-20515775 Msa0013250:intron 60.0%
GAGGAGGAAGAGGGAACGTG+AGG + chr1_1:20515783-20515802 Msa0013250:intron 60.0%
TTTGCGGCTCCTCTTACCCC+AGG - chr1_1:20516533-20516552 None:intergenic 60.0%
CGATCACAGGGCAGGCAGAA+AGG - chr1_1:20516628-20516647 None:intergenic 60.0%
GCCTTGCGGCCAGAAATCCT+TGG + chr1_1:20516727-20516746 Msa0013250:intron 60.0%
!! GCCAAGGATTTCTGGCCGCA+AGG - chr1_1:20516731-20516750 None:intergenic 60.0%
AGACGCGACACTGACACGTG+TGG + chr1_1:20517775-20517794 Msa0013250:intron 60.0%
GTCCATACCGGGTACGCGTA+CGG + chr1_1:20520202-20520221 Msa0013250:three_prime_UTR 60.0%
TACCGTACGCGTACCCGGTA+TGG - chr1_1:20520207-20520226 None:intergenic 60.0%
! ACGAGTACCGTACGCGTACC+CGG - chr1_1:20520212-20520231 None:intergenic 60.0%
AGGGGCAGCCGTTGGAACAG+AGG + chr1_1:20515764-20515783 Msa0013250:intron 65.0%
GGCAGCCGTTGGAACAGAGG+AGG + chr1_1:20515767-20515786 Msa0013250:intron 65.0%
CTATTCCTGGCGGCACCGTC+TGG + chr1_1:20517230-20517249 Msa0013250:CDS 65.0%
GGGTACGCGTACGGTACTCG+TGG + chr1_1:20520211-20520230 Msa0013250:three_prime_UTR 65.0%
!! AGACGCCAGACGGTGCCGCC+AGG - chr1_1:20517238-20517257 None:intergenic 75.0%
GGCGGCACCGTCTGGCGTCT+AGG + chr1_1:20517238-20517257 Msa0013250:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20514399 20520519 20514399 ID=Msa0013250;Name=Msa0013250
chr1_1 mRNA 20514399 20520519 20514399 ID=Msa0013250-mRNA-1;Parent=Msa0013250;Name=Msa0013250-mRNA-1;_AED=0.30;_eAED=0.30;_QI=135|0.33|0.5|1|0.66|0.75|4|448|279
chr1_1 exon 20514399 20514596 20514399 ID=Msa0013250-mRNA-1:exon:7304;Parent=Msa0013250-mRNA-1
chr1_1 exon 20517169 20517565 20517169 ID=Msa0013250-mRNA-1:exon:7305;Parent=Msa0013250-mRNA-1
chr1_1 exon 20519560 20519666 20519560 ID=Msa0013250-mRNA-1:exon:7306;Parent=Msa0013250-mRNA-1
chr1_1 exon 20519799 20520519 20519799 ID=Msa0013250-mRNA-1:exon:7307;Parent=Msa0013250-mRNA-1
chr1_1 five_prime_UTR 20514399 20514533 20514399 ID=Msa0013250-mRNA-1:five_prime_utr;Parent=Msa0013250-mRNA-1
chr1_1 CDS 20514534 20514596 20514534 ID=Msa0013250-mRNA-1:cds;Parent=Msa0013250-mRNA-1
chr1_1 CDS 20517169 20517565 20517169 ID=Msa0013250-mRNA-1:cds;Parent=Msa0013250-mRNA-1
chr1_1 CDS 20519560 20519666 20519560 ID=Msa0013250-mRNA-1:cds;Parent=Msa0013250-mRNA-1
chr1_1 CDS 20519799 20520071 20519799 ID=Msa0013250-mRNA-1:cds;Parent=Msa0013250-mRNA-1
chr1_1 three_prime_UTR 20520072 20520519 20520072 ID=Msa0013250-mRNA-1:three_prime_utr;Parent=Msa0013250-mRNA-1
Gene Sequence

>Msa0013250

ATGCCTCTTCTTCCTTCTTTCCACAAGCTCATTCTTCCAACAACCCTTCAATCTAAGCAATTGAGGATTCCGGATAATTTTCTGAGGAAACACGGGGACCAACTTTCGACTGTCGCAACTGTCACTATTCCTGGCGGCACCGTCTGGCGTCTAGGATTGAAAAAGGTTGGCAACCGTATTTGTTTTGTGGATGGCTGGCAAGATTTTATTCAACGCTACTCAATTGGCATTGGATACTTACTACTATTCACATACGAAGGAAGGTCAAATTTCATCGTTTATATCTTCCGTACTACTGAGTTAAACTATGATTCAACAATGAGAAGCCGGACTGAAGAGCCTTTCTATGAAGACTATAATTATGTTTTTGAAGGCATTGAAGATATCGACTCCTTTGATTTCCTGGATTCGGCACCTTCAAACCCTACTGGTGCATTGCAAAGCAAGGATTCTGCTGGATCCTATGAACGTGCGTCTGCAAGAGTAAGACACAATGTGTCAGATGAAGAAAGAGAAAGGGCAATGAATGAGGCAAAAGCATTTGTACCAACTAATCCTTACTGTCTTTATTTGCCTACCAGATTTGGAGCAAATTTGAAGGGTGTTTCAGGTTTTATTCCGCTTCAGACATCCGATGGTGAGAAACAGTGGCGTGTTCGCTGCCTTGATGACAAAGGCCGGAAAAAGTTAAGCCAAGGATGGTACGAATTTACACAAGAGAACGGTTTAGGGGAAGGGGATATCTGTGTTTTTGAGCTGCTTAATACCAGAGATGTAGTGTTGCAAGTTACTTTGTTTCGTCTAAAAGAGGATGAACCCTCACTTGCAGCACTGCGTTAG
Protein sequence

>Msa0013250

MPLLPSFHKLILPTTLQSKQLRIPDNFLRKHGDQLSTVATVTIPGGTVWRLGLKKVGNRICFVDGWQDFIQRYSIGIGYLLLFTYEGRSNFIVYIFRTTELNYDSTMRSRTEEPFYEDYNYVFEGIEDIDSFDFLDSAPSNPTGALQSKDSAGSYERASARVRHNVSDEERERAMNEAKAFVPTNPYCLYLPTRFGANLKGVSGFIPLQTSDGEKQWRVRCLDDKGRKKLSQGWYEFTQENGLGEGDICVFELLNTRDVVLQVTLFRLKEDEPSLAALR*