AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106470 MtrunA17_Chr1g0162411 87.261 157 20 0 1 157 1 157 4.76e-99 297
Msa0106470 MtrunA17_Chr1g0162411 73.958 96 11 1 154 235 296 391 3.45e-40 144
Msa0106470 MtrunA17_Chr1g0162441 68.824 170 50 2 1 167 1 170 7.61e-76 237
Msa0106470 MtrunA17_Chr1g0162441 63.971 136 32 4 155 275 267 400 3.69e-46 160
Msa0106470 MtrunA17_Chr4g0033961 48.077 156 78 2 5 157 4 159 4.73e-46 160
Msa0106470 MtrunA17_Chr4g0033961 56.204 137 43 4 155 276 263 397 2.26e-40 145
Msa0106470 MtrunA17_Chr5g0429931 35.769 260 126 9 22 267 10 242 2.51e-37 132
Msa0106470 MtrunA17_Chr3g0077451 32.830 265 120 8 21 267 10 234 1.16e-33 122
Msa0106470 MtrunA17_Chr3g0077411 30.000 280 151 5 7 266 262 516 5.74e-33 126
Msa0106470 MtrunA17_Chr3g0077411 30.466 279 133 9 7 272 25 255 5.16e-27 109
Msa0106470 MtrunA17_Chr3g0103181 32.143 280 158 11 7 266 12 279 2.51e-32 120
Msa0106470 MtrunA17_Chr3g0131891 29.568 301 156 7 7 267 19 303 2.02e-31 119
Msa0106470 MtrunA17_Chr3g0103171 29.259 270 157 8 22 266 5 265 1.49e-27 107
Msa0106470 MtrunA17_Chr1g0162421 77.586 58 13 0 21 78 7 64 1.73e-27 101
Msa0106470 MtrunA17_Chr1g0163071 28.013 307 152 9 23 274 2 294 2.79e-27 107
Msa0106470 MtrunA17_Chr3g0077361 30.882 272 127 9 7 264 40 264 5.53e-27 109
Msa0106470 MtrunA17_Chr3g0077361 30.037 273 119 9 7 267 289 501 1.03e-26 108
Msa0106470 MtrunA17_Chr3g0077461 27.757 263 154 5 7 265 237 467 3.69e-26 106
Msa0106470 MtrunA17_Chr3g0077461 30.108 279 138 11 1 272 2 230 2.66e-23 98.6
Msa0106470 MtrunA17_Chr8g0390841 27.419 310 169 11 7 272 39 336 4.91e-26 107
Msa0106470 MtrunA17_Chr7g0233561 28.188 298 174 6 7 267 18 312 3.70e-25 102
Msa0106470 MtrunA17_Chr1g0208771 27.425 299 160 11 22 275 12 298 1.16e-23 99.8
Msa0106470 MtrunA17_Chr4g0009491 31.579 228 116 6 7 222 225 424 4.21e-23 97.8
Msa0106470 MtrunA17_Chr4g0009491 30.252 238 107 8 21 246 11 201 1.46e-21 93.6
Msa0106470 MtrunA17_Chr3g0077421 30.472 233 111 7 51 268 1 197 1.02e-22 92.8
Msa0106470 MtrunA17_Chr3g0077441 30.472 233 111 7 51 268 1 197 1.02e-22 92.8
Msa0106470 MtrunA17_Chr3g0077381 30.734 218 124 4 7 222 247 439 1.67e-21 93.6
Msa0106470 MtrunA17_Chr3g0077381 28.862 246 116 7 21 264 34 222 4.48e-21 92.4
Msa0106470 MtrunA17_Chr3g0103201 28.936 235 116 8 65 266 4 220 2.03e-21 89.7
Msa0106470 MtrunA17_Chr7g0233521 25.368 272 166 7 23 267 2 263 6.41e-20 87.0
Msa0106470 MtrunA17_Chr7g0233531 26.259 278 156 8 23 267 2 263 1.42e-19 86.3
Msa0106470 MtrunA17_Chr5g0419201 37.755 98 61 0 7 104 16 113 2.58e-19 83.6
Msa0106470 MtrunA17_Chr3g0103191 26.840 231 149 6 7 222 12 237 2.35e-18 82.0
Msa0106470 MtrunA17_Chr3g0103151 34.028 144 83 3 7 148 12 145 2.82e-18 79.7
Msa0106470 MtrunA17_Chr7g0233541 26.148 283 167 9 23 267 2 280 5.41e-18 82.0
Msa0106470 MtrunA17_Chr1g0162431 69.811 53 16 0 220 272 5 57 5.99e-18 76.3
Msa0106470 MtrunA17_Chr1g0154161 26.923 286 174 10 7 266 30 306 4.71e-17 79.7
Msa0106470 MtrunA17_Chr7g0233571 37.895 95 59 0 7 101 10 104 4.86e-16 75.1
Msa0106470 MtrunA17_Chr1g0163131 22.184 293 189 7 7 265 18 305 6.23e-15 73.6
Msa0106470 MtrunA17_Chr1g0154151 24.573 293 166 11 23 263 20 309 4.69e-13 68.2
Msa0106470 MtrunA17_Chr1g0163221 24.828 290 188 10 7 271 11 295 9.74e-13 67.4
Msa0106470 MtrunA17_Chr1g0163181 26.230 305 188 11 4 278 6 303 7.46e-12 65.1
Msa0106470 MtrunA17_Chr3g0103161 34.259 108 54 5 173 265 17 122 2.09e-11 60.1
Msa0106470 MtrunA17_Chr1g0154041 29.524 105 73 1 5 109 14 117 4.55e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106470 AT3G18990.1 42.353 340 118 9 5 270 4 339 4.20e-77 238
Msa0106470 AT3G18990.2 42.059 340 119 9 5 270 4 339 8.76e-76 236
Msa0106470 AT1G49480.3 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0106470 AT1G49480.1 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0106470 AT1G49480.2 54.795 146 48 4 140 270 82 224 4.88e-41 142
Msa0106470 AT4G01580.1 40.196 102 59 1 4 103 27 128 2.76e-20 86.3
Msa0106470 AT3G18960.1 38.542 96 59 0 4 99 27 122 1.15e-18 82.4
Msa0106470 AT3G18960.2 38.542 96 59 0 4 99 27 122 1.61e-18 81.6
Msa0106470 AT1G49475.1 30.534 131 88 2 2 130 29 158 4.24e-13 67.0
Msa0106470 AT3G18960.3 36.905 84 53 0 16 99 2 85 1.02e-12 65.5

Find 91 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTATAAATTTGGTGAAAT+TGG 0.054465 1_3:+15895572 Msa0106470:five_prime_UTR
GCAAATTTGAAGGGTGTTTC+AGG 0.187865 1_3:+15900996 Msa0106470:CDS
GCTATAAATTTGGTGAAATT+GGG 0.256472 1_3:+15895573 Msa0106470:five_prime_UTR
GTTATATAATATAACATGAT+AGG 0.259067 1_3:-15901585 None:intergenic
TATCGACTCCTTTGATTTCC+TGG 0.264885 1_3:+15898682 Msa0106470:CDS
TTTACACAAGAGAACGGTTT+AGG 0.281466 1_3:+15901116 Msa0106470:CDS
ATTCTCTAGTTTATTCAGTT+TGG 0.286188 1_3:+15901337 Msa0106470:three_prime_UTR
CAGTATTTGCCTACCAGATT+TGG 0.288300 1_3:+15900972 Msa0106470:intron
CTCCTTTGATTTCCTGGATT+CGG 0.304226 1_3:+15898688 Msa0106470:CDS
TGACTTAATAGCTATAAATT+TGG 0.305250 1_3:+15895563 None:intergenic
CTTCAAATTTGCTCCAAATC+TGG 0.314432 1_3:-15900985 None:intergenic
TCTTGCAGACGCACGTTCAT+AGG 0.341018 1_3:-15900736 None:intergenic
CTATTCCTGGCGGCACCGTC+TGG 0.365680 1_3:+15898423 Msa0106470:CDS
TGCTTAGATTGAAGGGTTGT+TGG 0.371314 1_3:-15895743 None:intergenic
CTGGCGTCTAGGATTGAAAA+AGG 0.378642 1_3:+15898442 Msa0106470:CDS
TTACACAAGAGAACGGTTTA+GGG 0.383205 1_3:+15901117 Msa0106470:CDS
TTGAAAGTTGAAAACTTTGA+AGG 0.393967 1_3:-15895656 None:intergenic
GTCGCAACTGTCACTATTCC+TGG 0.396303 1_3:+15898410 Msa0106470:CDS
TTTATTCAACGCTACTCAAT+TGG 0.396344 1_3:+15898503 Msa0106470:CDS
CTCTTACTTCTGAGTGATCC+TGG 0.418604 1_3:+15901313 Msa0106470:three_prime_UTR
CAAGCTATGTTGCATAGGTA+TGG 0.423542 1_3:-15901682 None:intergenic
AACCCTTCAATCTAAGCAAT+TGG 0.424880 1_3:+15895748 Msa0106470:CDS
GCATTGTGAGAGAATGAGAT+TGG 0.425049 1_3:-15895688 None:intergenic
TTACCAATTGCTTAGATTGA+AGG 0.430305 1_3:-15895751 None:intergenic
TACTTTGTTTCGTCTAAAAG+AGG 0.450484 1_3:+15901196 Msa0106470:CDS
GTGTAAATTCGTACCATCCT+TGG 0.456711 1_3:-15901100 None:intergenic
CTATAAATTTGGTGAAATTG+GGG 0.458614 1_3:+15895574 Msa0106470:five_prime_UTR
CATAGAAAGGCTCTTCAGTC+CGG 0.462587 1_3:-15898625 None:intergenic
AGAATGAGCTTGTGGAAAGA+AGG 0.463674 1_3:-15895719 None:intergenic
GGTTTGAAGGTGCCGAATCC+AGG 0.469504 1_3:-15898700 None:intergenic
AATGCACCAGTAGGGTTTGA+AGG 0.471364 1_3:-15898713 None:intergenic
GATACTTTCTATGTCCATAC+CGG 0.474003 1_3:+15901366 Msa0106470:three_prime_UTR
CAGATTTGGAGCAAATTTGA+AGG 0.476313 1_3:+15900986 Msa0106470:CDS
GTCCATACCGGGTACGCGTA+CGG 0.483203 1_3:+15901378 Msa0106470:three_prime_UTR
GGCGGCACCGTCTGGCGTCT+AGG 0.484238 1_3:+15898431 Msa0106470:CDS
TGCTTTGCAATGCACCAGTA+GGG 0.484811 1_3:-15898721 None:intergenic
TTATATAATATAACATGATA+GGG 0.495380 1_3:-15901584 None:intergenic
CAACGCTACTCAATTGGCAT+TGG 0.496965 1_3:+15898509 Msa0106470:CDS
TGGGTACAGGTACGAGATTA+CGG 0.497721 1_3:-15901662 None:intergenic
AACTTGCAACACTACATCTC+TGG 0.504545 1_3:-15901174 None:intergenic
TACCAATTGCTTAGATTGAA+GGG 0.513266 1_3:-15895750 None:intergenic
AGAGAACGGTTTAGGGGAAG+GGG 0.514068 1_3:+15901124 Msa0106470:CDS
TGTTTCCTCAGAAAATTATC+CGG 0.517233 1_3:-15898368 None:intergenic
TGTCAGATGAAGAAAGAGAA+AGG 0.518068 1_3:+15900772 Msa0106470:CDS
AGACGCCAGACGGTGCCGCC+AGG 0.521079 1_3:-15898428 None:intergenic
TACCGTACGCGTACCCGGTA+TGG 0.521278 1_3:-15901380 None:intergenic
CTAACGCAGTGCTGCAAGTG+AGG 0.521510 1_3:-15901225 None:intergenic
ACAAGACAGTAAGGATTAGT+TGG 0.522215 1_3:-15900822 None:intergenic
TAATTATAGTCTTCATAGAA+AGG 0.526871 1_3:-15898638 None:intergenic
AAGAGAACGGTTTAGGGGAA+GGG 0.530709 1_3:+15901123 Msa0106470:CDS
TTGCAAAGCAAGGATTCTGC+TGG 0.532722 1_3:+15898734 Msa0106470:CDS
CAATCCAAGCTATGTTGCAT+AGG 0.534379 1_3:-15901687 None:intergenic
TTGCTTTGCAATGCACCAGT+AGG 0.535055 1_3:-15898722 None:intergenic
TTTGACTGAAAAGCAGAGAA+GGG 0.535951 1_3:+15895610 Msa0106470:five_prime_UTR
CAAGAGAACGGTTTAGGGGA+AGG 0.536429 1_3:+15901122 Msa0106470:CDS
AGCCATCCACAAAACAAATA+CGG 0.548306 1_3:-15898472 None:intergenic
AGATTTGGAGCAAATTTGAA+GGG 0.548691 1_3:+15900987 Msa0106470:CDS
GTTTGACTGAAAAGCAGAGA+AGG 0.553340 1_3:+15895609 Msa0106470:five_prime_UTR
TCGGCACCTTCAAACCCTAC+TGG 0.554321 1_3:+15898707 Msa0106470:CDS
GTCAGATGAAGAAAGAGAAA+GGG 0.559696 1_3:+15900773 Msa0106470:CDS
AAGAGAAAGGGCAATGAATG+AGG 0.560927 1_3:+15900785 Msa0106470:CDS
CGCAGACTAACAAGACAGTA+AGG 0.562349 1_3:-15900831 None:intergenic
GCTGCCTTGATGACAAAGGC+CGG 0.563135 1_3:+15901066 Msa0106470:CDS
ATGATTCAACAATGAGAAGC+CGG 0.564717 1_3:+15898606 Msa0106470:CDS
AAGCTATGTTGCATAGGTAT+GGG 0.564739 1_3:-15901681 None:intergenic
TATAAATTTGGTGAAATTGG+GGG 0.572057 1_3:+15895575 Msa0106470:five_prime_UTR
TACTATTCACATACGAAGGA+AGG 0.576020 1_3:+15898540 Msa0106470:CDS
TGTTGCATAGGTATGGGTAC+AGG 0.576281 1_3:-15901675 None:intergenic
ACGCCACTGTTTCTCACCAT+CGG 0.581074 1_3:-15901039 None:intergenic
TTGTGGAAAGAAGGAAGAAG+AGG 0.582385 1_3:-15895710 None:intergenic
CAGTTGCGACAGTCGAAAGT+TGG 0.587358 1_3:-15898397 None:intergenic
ATACTTTCTATGTCCATACC+GGG 0.587476 1_3:+15901367 Msa0106470:three_prime_UTR
CATAGTTTAACTCAGTAGTA+CGG 0.587876 1_3:-15898586 None:intergenic
ATTCCGCTTCAGACATCCGA+TGG 0.591154 1_3:+15901023 Msa0106470:CDS
TACTGGTGCATTGCAAAGCA+AGG 0.593014 1_3:+15898724 Msa0106470:CDS
AAATTTGCTCCAAATCTGGT+AGG 0.596789 1_3:-15900981 None:intergenic
TACGAATTTACACAAGAGAA+CGG 0.605728 1_3:+15901110 Msa0106470:CDS
TGAATAAACTAGAGAATACC+AGG 0.606340 1_3:-15901331 None:intergenic
TTTCAATCCTAGACGCCAGA+CGG 0.606617 1_3:-15898438 None:intergenic
TAACGCAGTGCTGCAAGTGA+GGG 0.609733 1_3:-15901224 None:intergenic
TTGTTGGAAGAATGAGCTTG+TGG 0.610517 1_3:-15895727 None:intergenic
TGCCGAATCCAGGAAATCAA+AGG 0.612101 1_3:-15898690 None:intergenic
ACGAGTACCGTACGCGTACC+CGG 0.614617 1_3:-15901385 None:intergenic
TCACCATCGGATGTCTGAAG+CGG 0.621327 1_3:-15901026 None:intergenic
TTGACTGAAAAGCAGAGAAG+GGG 0.640302 1_3:+15895611 Msa0106470:five_prime_UTR
CATCCGATGGTGAGAAACAG+TGG 0.644228 1_3:+15901036 Msa0106470:CDS
GTTCGCTGCCTTGATGACAA+AGG 0.645710 1_3:+15901062 Msa0106470:CDS
TTACTACTATTCACATACGA+AGG 0.656130 1_3:+15898536 Msa0106470:CDS
TACACAAGAGAACGGTTTAG+GGG 0.668422 1_3:+15901118 Msa0106470:CDS
GGGTACGCGTACGGTACTCG+TGG 0.714655 1_3:+15901387 Msa0106470:three_prime_UTR
GCAACTGTCACTATTCCTGG+CGG 0.770854 1_3:+15898413 Msa0106470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTATATTAAATTTT+AGG + chr1_3:15896788-15896807 Msa0106470:intron 0.0%
!! TAATATAATAAAATCTCAAT+TGG - chr1_3:15896782-15896801 None:intergenic 10.0%
!!! TTATATTAAATTTTAGGTTT+TGG + chr1_3:15896794-15896813 Msa0106470:intron 10.0%
!! ATTAAATAAATAAATTGGTT+TGG - chr1_3:15898113-15898132 None:intergenic 10.0%
!! TCTCTATTAAATAAATAAAT+TGG - chr1_3:15898118-15898137 None:intergenic 10.0%
!!! AAAAAAAATAGTTTAAAATG+TGG - chr1_3:15899534-15899553 None:intergenic 10.0%
!!! ACATTTTAAACTATTTTTTT+TGG + chr1_3:15899533-15899552 Msa0106470:intron 10.0%
!!! AATTTTTTGATATTTTTCTT+TGG + chr1_3:15900901-15900920 Msa0106470:intron 10.0%
!! TTATATAATATAACATGATA+GGG - chr1_3:15901587-15901606 None:intergenic 10.0%
!!! TTTTTTTAAAATTAAGATAC+GGG - chr1_3:15901639-15901658 None:intergenic 10.0%
!! AAACAGAATAAAAAAATCAT+GGG - chr1_3:15896025-15896044 None:intergenic 15.0%
!! TAAACAGAATAAAAAAATCA+TGG - chr1_3:15896026-15896045 None:intergenic 15.0%
!!! ATTGAAGTTTATTTTTTGTT+TGG + chr1_3:15896234-15896253 Msa0106470:intron 15.0%
!! AGTGATATGAATTAAAATAT+AGG + chr1_3:15896731-15896750 Msa0106470:intron 15.0%
!! TATGAATTAAAATATAGGAT+TGG + chr1_3:15896736-15896755 Msa0106470:intron 15.0%
!! TTGAAGTTTGAATAAAAATA+TGG + chr1_3:15900119-15900138 Msa0106470:intron 15.0%
!! AAAAAGTTGAAAATTAAAGT+TGG - chr1_3:15901521-15901540 None:intergenic 15.0%
!! GTTATATAATATAACATGAT+AGG - chr1_3:15901588-15901607 None:intergenic 15.0%
!! AAATCCAAACTTTATGAAAA+GGG - chr1_3:15895905-15895924 None:intergenic 20.0%
!! AAAATCCAAACTTTATGAAA+AGG - chr1_3:15895906-15895925 None:intergenic 20.0%
!!! CCTTTTCAATTTCAATTTTA+GGG - chr1_3:15896310-15896329 None:intergenic 20.0%
!!! ACCTTTTCAATTTCAATTTT+AGG - chr1_3:15896311-15896330 None:intergenic 20.0%
!!! TAAATTTTAGGTTTTGGATA+TGG + chr1_3:15896800-15896819 Msa0106470:intron 20.0%
!! AAGAAAAGGAAATTGAAATT+AGG + chr1_3:15896840-15896859 Msa0106470:intron 20.0%
!!! AGTTTATGTCTTTATTTTCA+TGG + chr1_3:15897153-15897172 Msa0106470:intron 20.0%
!! TTGATAGAATTTATTGTCTT+GGG + chr1_3:15897282-15897301 Msa0106470:intron 20.0%
!!! AATATTATTTTCAATTGCAG+AGG + chr1_3:15898342-15898361 Msa0106470:intron 20.0%
!! TAATTATAGTCTTCATAGAA+AGG - chr1_3:15898641-15898660 None:intergenic 20.0%
!!! GACTATAATTATGTTTTTGA+AGG + chr1_3:15898650-15898669 Msa0106470:CDS 20.0%
!!! TATTTCACGTTTTCAAATTA+CGG + chr1_3:15899002-15899021 Msa0106470:intron 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_3:15899103-15899122 Msa0106470:intron 20.0%
!! TGTATAATTAAGAAAGTTGT+TGG - chr1_3:15899694-15899713 None:intergenic 20.0%
!! TTAATTATACAGAGAAAGAA+TGG + chr1_3:15899703-15899722 Msa0106470:intron 20.0%
!! CAAATTTGATTACTGAAAAA+TGG - chr1_3:15899862-15899881 None:intergenic 20.0%
!!! CATTTTTCAGTAATCAAATT+TGG + chr1_3:15899860-15899879 Msa0106470:intron 20.0%
!! ATTGCTTCTGATAAAAAAAT+TGG - chr1_3:15899998-15900017 None:intergenic 20.0%
!! ATTGTCATCAATATAATTTG+TGG + chr1_3:15899103-15899122 Msa0106470:intron 20.0%
!!! TATTTCACGTTTTCAAATTA+TGG + chr1_3:15899002-15899021 Msa0106470:intron 20.0%
!! CATAGAATAAATAGCAAAAA+TGG - chr1_3:15901417-15901436 None:intergenic 20.0%
!!! CATTTTTGCTATTTATTCTA+TGG + chr1_3:15901415-15901434 Msa0106470:three_prime_UTR 20.0%
!! AGCTATAAATTTGGTGAAAT+TGG + chr1_3:15895572-15895591 Msa0106470:five_prime_UTR 25.0%
!! GCTATAAATTTGGTGAAATT+GGG + chr1_3:15895573-15895592 Msa0106470:five_prime_UTR 25.0%
!! CTATAAATTTGGTGAAATTG+GGG + chr1_3:15895574-15895593 Msa0106470:five_prime_UTR 25.0%
!! TATAAATTTGGTGAAATTGG+GGG + chr1_3:15895575-15895594 Msa0106470:five_prime_UTR 25.0%
! TTGAAAGTTGAAAACTTTGA+AGG - chr1_3:15895659-15895678 None:intergenic 25.0%
! GAAAACAGAAACAAAAAACA+TGG - chr1_3:15895834-15895853 None:intergenic 25.0%
! AATCCAAACTTTATGAAAAG+GGG - chr1_3:15895904-15895923 None:intergenic 25.0%
!! CATAAAGTTTGGATTTTTGT+TGG + chr1_3:15895909-15895928 Msa0106470:intron 25.0%
!! AACTTGATGATCAAAATCAT+GGG - chr1_3:15895947-15895966 None:intergenic 25.0%
!! AAACTTGATGATCAAAATCA+TGG - chr1_3:15895948-15895967 None:intergenic 25.0%
!!! ATGATTTTGATCATCAAGTT+TGG + chr1_3:15895947-15895966 Msa0106470:intron 25.0%
!!! GATTTTTCAGAAGTTGTATT+TGG + chr1_3:15896114-15896133 Msa0106470:intron 25.0%
! ATCAAAAGAGTCAAATTCTA+GGG - chr1_3:15896160-15896179 None:intergenic 25.0%
! TTTGATCATAACATAACTCA+TGG + chr1_3:15896174-15896193 Msa0106470:intron 25.0%
! CCCTAAAATTGAAATTGAAA+AGG + chr1_3:15896307-15896326 Msa0106470:intron 25.0%
!!! GTGTGCTGTTTTAAAAAAAA+AGG + chr1_3:15896652-15896671 Msa0106470:intron 25.0%
!!! CTGTTTTAAAAAAAAAGGAG+AGG + chr1_3:15896657-15896676 Msa0106470:intron 25.0%
! ATTGCATACAGAATAAGAAA+AGG + chr1_3:15896826-15896845 Msa0106470:intron 25.0%
!! ATAACTGTTGCAATTTTTCT+TGG + chr1_3:15897194-15897213 Msa0106470:intron 25.0%
! CTTGATAGAATTTATTGTCT+TGG + chr1_3:15897281-15897300 Msa0106470:intron 25.0%
! TTAATATATGACACAGTGAA+CGG + chr1_3:15897323-15897342 Msa0106470:intron 25.0%
! AAATCCAAGTAGAATTTCAT+AGG - chr1_3:15897361-15897380 None:intergenic 25.0%
! ATTAACTACCGTTATGAATA+TGG - chr1_3:15897527-15897546 None:intergenic 25.0%
! CATTTGGCTAAAAATAAACT+AGG - chr1_3:15897615-15897634 None:intergenic 25.0%
!!! TTATTTTTAGCCAAATGAGA+TGG + chr1_3:15897618-15897637 Msa0106470:intron 25.0%
!!! TTTTTTCCTCTTTTTGATTC+TGG + chr1_3:15898258-15898277 Msa0106470:intron 25.0%
! TATGAGCATTTACTAACATT+TGG + chr1_3:15898313-15898332 Msa0106470:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_3:15898893-15898912 Msa0106470:intron 25.0%
! TTTACTATACTATGTAGCAT+TGG + chr1_3:15898893-15898912 Msa0106470:intron 25.0%
!! TATTTCACGTTTTCAAACTA+CGG + chr1_3:15899362-15899381 Msa0106470:intron 25.0%
!!! AAACTATTTTTTTTGGCTAC+CGG + chr1_3:15899540-15899559 Msa0106470:intron 25.0%
! TGTGCTCTATTTATTTGATT+TGG - chr1_3:15899831-15899850 None:intergenic 25.0%
! TCAGTAATCAAATTTGGATT+TGG + chr1_3:15899866-15899885 Msa0106470:intron 25.0%
!!! GTTTGAGATTAATGTTCTTT+TGG + chr1_3:15900048-15900067 Msa0106470:intron 25.0%
! AAAACTAAAAACCTGATAAC+CGG - chr1_3:15900168-15900187 None:intergenic 25.0%
!!! GTTTTAAAAAAGTGATGATG+TGG + chr1_3:15900183-15900202 Msa0106470:intron 25.0%
! TCAAACACTCTTTCAATTAT+TGG - chr1_3:15900210-15900229 None:intergenic 25.0%
! AAGAAAACTTCAAGAAAGAA+GGG + chr1_3:15898821-15898840 Msa0106470:intron 25.0%
! ATTGTCATCAGAATAATTTG+TGG + chr1_3:15900639-15900658 Msa0106470:intron 25.0%
!! ATTCTCTAGTTTATTCAGTT+TGG + chr1_3:15901337-15901356 Msa0106470:three_prime_UTR 25.0%
TACCAATTGCTTAGATTGAA+GGG - chr1_3:15895753-15895772 None:intergenic 30.0%
TTACCAATTGCTTAGATTGA+AGG - chr1_3:15895754-15895773 None:intergenic 30.0%
CTTTATGAAAAGGGGAATTA+GGG - chr1_3:15895896-15895915 None:intergenic 30.0%
ACTTTATGAAAAGGGGAATT+AGG - chr1_3:15895897-15895916 None:intergenic 30.0%
! ATTCCCCTTTTCATAAAGTT+TGG + chr1_3:15895898-15895917 Msa0106470:intron 30.0%
!! AATTTGATTCAGTGTTGCTT+AGG + chr1_3:15896085-15896104 Msa0106470:intron 30.0%
GATCAAAAGAGTCAAATTCT+AGG - chr1_3:15896161-15896180 None:intergenic 30.0%
! ACCTGAACTCTTCAATTTTA+TGG - chr1_3:15896383-15896402 None:intergenic 30.0%
!! TAAATGGAGCATTGGTTAAA+TGG - chr1_3:15896411-15896430 None:intergenic 30.0%
!! TATTTGCTATGAACACTTGA+AGG + chr1_3:15897390-15897409 Msa0106470:intron 30.0%
ACGAATCTCCATATTCATAA+CGG + chr1_3:15897516-15897535 Msa0106470:intron 30.0%
AAGTCAAATACCATCTCATT+TGG - chr1_3:15897631-15897650 None:intergenic 30.0%
!! TTGTGCAATTCTTTGCTTTT+TGG + chr1_3:15898059-15898078 Msa0106470:intron 30.0%
!!! TGTGCAATTCTTTGCTTTTT+GGG + chr1_3:15898060-15898079 Msa0106470:intron 30.0%
TGTTTCCTCAGAAAATTATC+CGG - chr1_3:15898371-15898390 None:intergenic 30.0%
!! GATAATTTTCTGAGGAAACA+CGG + chr1_3:15898371-15898390 Msa0106470:CDS 30.0%
!! ATAATTTTCTGAGGAAACAC+GGG + chr1_3:15898372-15898391 Msa0106470:CDS 30.0%
TTTATTCAACGCTACTCAAT+TGG + chr1_3:15898503-15898522 Msa0106470:CDS 30.0%
TTACTACTATTCACATACGA+AGG + chr1_3:15898536-15898555 Msa0106470:CDS 30.0%
CATAGTTTAACTCAGTAGTA+CGG - chr1_3:15898589-15898608 None:intergenic 30.0%
!!! CCTTATTTTCTTGTCTTTGT+TGG - chr1_3:15898796-15898815 None:intergenic 30.0%
CCAACAAAGACAAGAAAATA+AGG + chr1_3:15898793-15898812 Msa0106470:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_3:15898822-15898841 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_3:15898822-15898841 Msa0106470:intron 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_3:15899112-15899131 Msa0106470:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_3:15898822-15898841 None:intergenic 30.0%
AGAAAACTTCAAGAAAGAAG+CGG + chr1_3:15898822-15898841 Msa0106470:intron 30.0%
! AGTTTAAAATGTGGATGACT+TGG - chr1_3:15899525-15899544 None:intergenic 30.0%
TCACTGTGTAAGTAAATAAC+CGG - chr1_3:15899562-15899581 None:intergenic 30.0%
! ATTAAGAAAGTTGTTGGTTG+TGG - chr1_3:15899688-15899707 None:intergenic 30.0%
TTTGTGATGTTGAAGCTTAA+TGG - chr1_3:15899752-15899771 None:intergenic 30.0%
AACATCACAAACTTGTCAAA+TGG + chr1_3:15899761-15899780 Msa0106470:intron 30.0%
ACATCACAAACTTGTCAAAT+GGG + chr1_3:15899762-15899781 Msa0106470:intron 30.0%
!!! GCTGTGATATAGGTTTTTTA+TGG + chr1_3:15899923-15899942 Msa0106470:intron 30.0%
GCAGATGAGATAATTAAAGA+TGG + chr1_3:15899945-15899964 Msa0106470:intron 30.0%
! ATTAGTTTCATCATGAGAGA+TGG + chr1_3:15900075-15900094 Msa0106470:intron 30.0%
! AATATAATTTGTGGAACTGC+AGG + chr1_3:15899112-15899131 Msa0106470:intron 30.0%
! CTTCTTTCTTGAAGTTTTCT+TGG - chr1_3:15898822-15898841 None:intergenic 30.0%
CAAGAAAACTTCAAGAAAGA+AGG + chr1_3:15898820-15898839 Msa0106470:intron 30.0%
TATGCATCCCCTATATAAAT+AGG - chr1_3:15900862-15900881 None:intergenic 30.0%
TTTATATAGGGGATGCATAA+TGG + chr1_3:15900863-15900882 Msa0106470:intron 30.0%
! AGATTTGGAGCAAATTTGAA+GGG + chr1_3:15900987-15901006 Msa0106470:CDS 30.0%
TACGAATTTACACAAGAGAA+CGG + chr1_3:15901110-15901129 Msa0106470:CDS 30.0%
! TACTTTGTTTCGTCTAAAAG+AGG + chr1_3:15901196-15901215 Msa0106470:CDS 30.0%
!! CAGTTTTGTAATTGTCTATC+AGG - chr1_3:15901283-15901302 None:intergenic 30.0%
TGAATAAACTAGAGAATACC+AGG - chr1_3:15901334-15901353 None:intergenic 30.0%
TTTGACTGAAAAGCAGAGAA+GGG + chr1_3:15895610-15895629 Msa0106470:five_prime_UTR 35.0%
AACCCTTCAATCTAAGCAAT+TGG + chr1_3:15895748-15895767 Msa0106470:CDS 35.0%
AGCAATTCAGATACAACTTG+TGG - chr1_3:15896346-15896365 None:intergenic 35.0%
GCCATAAAATTGAAGAGTTC+AGG + chr1_3:15896379-15896398 Msa0106470:intron 35.0%
!! AAATGGACTAAATGGAGCAT+TGG - chr1_3:15897087-15897106 None:intergenic 35.0%
ATGCTCCATTTAGTCCATTT+AGG + chr1_3:15896419-15896438 Msa0106470:intron 35.0%
!! CATGACCTAAATGGACTAAA+TGG - chr1_3:15897079-15897098 None:intergenic 35.0%
CATTTAGTCCATTTAGGTCA+TGG + chr1_3:15896425-15896444 Msa0106470:intron 35.0%
TGTGGCAAAAAATCATCCAA+GGG - chr1_3:15897048-15897067 None:intergenic 35.0%
ATGTGGCAAAAAATCATCCA+AGG - chr1_3:15897049-15897068 None:intergenic 35.0%
TCTTGTATCCATGACCTAAA+TGG + chr1_3:15897070-15897089 Msa0106470:intron 35.0%
CATTTAGTCCATTTAGGTCA+TGG - chr1_3:15896425-15896444 None:intergenic 35.0%
!! CATGACCTAAATGGACTAAA+TGG + chr1_3:15897079-15897098 Msa0106470:intron 35.0%
ATGCTCCATTTAGTCCATTT+AGG - chr1_3:15896419-15896438 None:intergenic 35.0%
!! AAATGGACTAAATGGAGCAT+TGG + chr1_3:15897087-15897106 Msa0106470:intron 35.0%
!! TAAATGGAGCATTGGCTAAA+TGG + chr1_3:15897095-15897114 Msa0106470:intron 35.0%
ACCTGAACTCAAAATTGAAC+TGG + chr1_3:15897123-15897142 Msa0106470:intron 35.0%
CCTGAACTCAAAATTGAACT+GGG + chr1_3:15897124-15897143 Msa0106470:intron 35.0%
AACTCAAAATTGAACTGGGT+TGG + chr1_3:15897128-15897147 Msa0106470:intron 35.0%
GTGTGCTTGTGTGTTAATTT+CGG + chr1_3:15897668-15897687 Msa0106470:intron 35.0%
TGTGCTTGTGTGTTAATTTC+GGG + chr1_3:15897669-15897688 Msa0106470:intron 35.0%
TGTAGGAATTTGAGGATTTG+CGG - chr1_3:15897742-15897761 None:intergenic 35.0%
TTTGCAGATGTAGGAATTTG+AGG - chr1_3:15897750-15897769 None:intergenic 35.0%
!!! GCTTTTTCATTTGCAGATGT+AGG - chr1_3:15897759-15897778 None:intergenic 35.0%
AATGAAAAAGCTCTTCTCAC+TGG + chr1_3:15897768-15897787 Msa0106470:intron 35.0%
CAGAATTGTGCACAACATTA+CGG - chr1_3:15897946-15897965 None:intergenic 35.0%
!! CTTTTTGGGAGTGAACAATT+GGG + chr1_3:15898074-15898093 Msa0106470:intron 35.0%
!! TTTTTGGGAGTGAACAATTG+GGG + chr1_3:15898075-15898094 Msa0106470:intron 35.0%
!! AAATTGGTTTGGCCTAAGTA+TGG - chr1_3:15898102-15898121 None:intergenic 35.0%
AATGAGCCAGAATCAAAAAG+AGG - chr1_3:15898267-15898286 None:intergenic 35.0%
! TTTTCAATTGCAGAGGATTC+CGG + chr1_3:15898349-15898368 Msa0106470:intron 35.0%
!! TAATTTTCTGAGGAAACACG+GGG + chr1_3:15898373-15898392 Msa0106470:CDS 35.0%
!!! AACCGTATTTGTTTTGTGGA+TGG + chr1_3:15898470-15898489 Msa0106470:CDS 35.0%
AGCCATCCACAAAACAAATA+CGG - chr1_3:15898475-15898494 None:intergenic 35.0%
TACTATTCACATACGAAGGA+AGG + chr1_3:15898540-15898559 Msa0106470:CDS 35.0%
ATGATTCAACAATGAGAAGC+CGG + chr1_3:15898606-15898625 Msa0106470:CDS 35.0%
!! GGAGGCTTTTGGAAAATTAA+AGG - chr1_3:15899731-15899750 None:intergenic 35.0%
TTCAAAGAACCTGCGTTAAT+TGG + chr1_3:15899788-15899807 Msa0106470:intron 35.0%
TCAAAGAACCTGCGTTAATT+GGG + chr1_3:15899789-15899808 Msa0106470:intron 35.0%
!! AAGCAAACTTGCTGTGATAT+AGG + chr1_3:15899913-15899932 Msa0106470:intron 35.0%
!! GTTTTGTTGAGATTCGATTG+TGG + chr1_3:15900024-15900043 Msa0106470:intron 35.0%
CTCTCATGATGAAACTAATG+AGG - chr1_3:15900074-15900093 None:intergenic 35.0%
TGTTAGTAAACCAGTATAGC+CGG + chr1_3:15900146-15900165 Msa0106470:intron 35.0%
! GCATTGACATTTCAGATTGA+AGG + chr1_3:15900450-15900469 Msa0106470:intron 35.0%
! TCACGTTTTCAAATTATGGC+TGG + chr1_3:15900547-15900566 Msa0106470:intron 35.0%
! AGAATAATTTGTGGAACTGC+AGG + chr1_3:15900648-15900667 Msa0106470:intron 35.0%
TGTCAGATGAAGAAAGAGAA+AGG + chr1_3:15900772-15900791 Msa0106470:CDS 35.0%
GTCAGATGAAGAAAGAGAAA+GGG + chr1_3:15900773-15900792 Msa0106470:CDS 35.0%
! ACAAGACAGTAAGGATTAGT+TGG - chr1_3:15900825-15900844 None:intergenic 35.0%
! AAATTTGCTCCAAATCTGGT+AGG - chr1_3:15900984-15901003 None:intergenic 35.0%
! CTTCAAATTTGCTCCAAATC+TGG - chr1_3:15900988-15901007 None:intergenic 35.0%
! CAGATTTGGAGCAAATTTGA+AGG + chr1_3:15900986-15901005 Msa0106470:CDS 35.0%
!! ATCCTTGGCTTAACTTTTTC+CGG - chr1_3:15901088-15901107 None:intergenic 35.0%
TTTACACAAGAGAACGGTTT+AGG + chr1_3:15901116-15901135 Msa0106470:CDS 35.0%
TTACACAAGAGAACGGTTTA+GGG + chr1_3:15901117-15901136 Msa0106470:CDS 35.0%
AGCTCAACCTAAAAATTAGC+TGG + chr1_3:15901246-15901265 Msa0106470:exon 35.0%
GCTCAACCTAAAAATTAGCT+GGG + chr1_3:15901247-15901266 Msa0106470:exon 35.0%
! AACTCTCCCAGCTAATTTTT+AGG - chr1_3:15901256-15901275 None:intergenic 35.0%
GATACTTTCTATGTCCATAC+CGG + chr1_3:15901366-15901385 Msa0106470:three_prime_UTR 35.0%
ATACTTTCTATGTCCATACC+GGG + chr1_3:15901367-15901386 Msa0106470:three_prime_UTR 35.0%
GTTTGACTGAAAAGCAGAGA+AGG + chr1_3:15895609-15895628 Msa0106470:five_prime_UTR 40.0%
TTGACTGAAAAGCAGAGAAG+GGG + chr1_3:15895611-15895630 Msa0106470:five_prime_UTR 40.0%
GCATTGTGAGAGAATGAGAT+TGG - chr1_3:15895691-15895710 None:intergenic 40.0%
TTGTGGAAAGAAGGAAGAAG+AGG - chr1_3:15895713-15895732 None:intergenic 40.0%
AGAATGAGCTTGTGGAAAGA+AGG - chr1_3:15895722-15895741 None:intergenic 40.0%
TTGTTGGAAGAATGAGCTTG+TGG - chr1_3:15895730-15895749 None:intergenic 40.0%
TGCTTAGATTGAAGGGTTGT+TGG - chr1_3:15895746-15895765 None:intergenic 40.0%
!! AGCGATGGATTGGTATCTTA+CGG - chr1_3:15896601-15896620 None:intergenic 40.0%
TAATACAGTAGCAACAGCGA+TGG - chr1_3:15896616-15896635 None:intergenic 40.0%
CAAGATCGTGATTAGCAAGA+GGG + chr1_3:15896922-15896941 Msa0106470:intron 40.0%
AAGATCGTGATTAGCAAGAG+GGG + chr1_3:15896923-15896942 Msa0106470:intron 40.0%
TAATGTTAAATCCCAGCCCT+TGG + chr1_3:15897029-15897048 Msa0106470:intron 40.0%
CAAAAAATCATCCAAGGGCT+GGG - chr1_3:15897043-15897062 None:intergenic 40.0%
!!! CCCAGTTCAATTTTGAGTTC+AGG - chr1_3:15897127-15897146 None:intergenic 40.0%
GCTGCCTATGAAATTCTACT+TGG + chr1_3:15897354-15897373 Msa0106470:intron 40.0%
CAGGTGCGTTAACTTTAATC+GGG - chr1_3:15897707-15897726 None:intergenic 40.0%
CCAGGTGCGTTAACTTTAAT+CGG - chr1_3:15897708-15897727 None:intergenic 40.0%
CGATTAAAGTTAACGCACCT+GGG + chr1_3:15897706-15897725 Msa0106470:intron 40.0%
GATTAAAGTTAACGCACCTG+GGG + chr1_3:15897707-15897726 Msa0106470:intron 40.0%
GTTCTCTGTTACACGTTCAA+AGG - chr1_3:15897798-15897817 None:intergenic 40.0%
! TTTGTCTGAAACCCCCTATT+TGG + chr1_3:15898004-15898023 Msa0106470:intron 40.0%
! TTGTCTGAAACCCCCTATTT+GGG + chr1_3:15898005-15898024 Msa0106470:intron 40.0%
AAACCATGTGCACCCAAATA+GGG - chr1_3:15898020-15898039 None:intergenic 40.0%
TAAACCATGTGCACCCAAAT+AGG - chr1_3:15898021-15898040 None:intergenic 40.0%
!! GCTTTTTGGGAGTGAACAAT+TGG + chr1_3:15898073-15898092 Msa0106470:intron 40.0%
AACAATTGGGGACCATACTT+AGG + chr1_3:15898087-15898106 Msa0106470:intron 40.0%
! GGATTCCGGATAATTTTCTG+AGG + chr1_3:15898363-15898382 Msa0106470:CDS 40.0%
! CGTCTAGGATTGAAAAAGGT+TGG + chr1_3:15898446-15898465 Msa0106470:CDS 40.0%
!!! TGGCAACCGTATTTGTTTTG+TGG + chr1_3:15898466-15898485 Msa0106470:CDS 40.0%
!!! GTATTTGTTTTGTGGATGGC+TGG + chr1_3:15898474-15898493 Msa0106470:CDS 40.0%
!! TATCGACTCCTTTGATTTCC+TGG + chr1_3:15898682-15898701 Msa0106470:CDS 40.0%
! CTCCTTTGATTTCCTGGATT+CGG + chr1_3:15898688-15898707 Msa0106470:CDS 40.0%
TATGGATCAACTGATACCAG+CGG + chr1_3:15898760-15898779 Msa0106470:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_3:15898909-15898928 Msa0106470:intron 40.0%
ATTGATGTGTATCAGACACC+GGG - chr1_3:15898939-15898958 None:intergenic 40.0%
CATTGATGTGTATCAGACAC+CGG - chr1_3:15898940-15898959 None:intergenic 40.0%
! TCACGTTTTCAAATTACGGC+TGG + chr1_3:15899006-15899025 Msa0106470:intron 40.0%
! GCATTGGCATTTCAGATTGA+AGG + chr1_3:15898909-15898928 Msa0106470:intron 40.0%
CTCAAAGAGAGAGTGGTTAT+TGG - chr1_3:15899498-15899517 None:intergenic 40.0%
ATAACCACTCTCTCTTTGAG+TGG + chr1_3:15899498-15899517 Msa0106470:intron 40.0%
ACGTTCTCTTTCTCTCTCTT+TGG + chr1_3:15899622-15899641 Msa0106470:intron 40.0%
GAAGACCTTTCAAATGACAG+AGG - chr1_3:15899653-15899672 None:intergenic 40.0%
! TTGTTGGTTGTGGTTAGATG+GGG - chr1_3:15899678-15899697 None:intergenic 40.0%
! GTTGTTGGTTGTGGTTAGAT+GGG - chr1_3:15899679-15899698 None:intergenic 40.0%
! AGTTGTTGGTTGTGGTTAGA+TGG - chr1_3:15899680-15899699 None:intergenic 40.0%
! TGAAGCTTAATGGAGGCTTT+TGG - chr1_3:15899742-15899761 None:intergenic 40.0%
GTGATGTTGAAGCTTAATGG+AGG - chr1_3:15899749-15899768 None:intergenic 40.0%
AGATGAATCCCAATTAACGC+AGG - chr1_3:15899800-15899819 None:intergenic 40.0%
TGCGTTAATTGGGATTCATC+TGG + chr1_3:15899799-15899818 Msa0106470:intron 40.0%
TTTGAGAGAGAGTGATAGAG+AGG + chr1_3:15900225-15900244 Msa0106470:intron 40.0%
CAAGAAAGAAGGGAAAATCG+CGG + chr1_3:15900372-15900391 Msa0106470:intron 40.0%
AAGAGAAAGGGCAATGAATG+AGG + chr1_3:15900785-15900804 Msa0106470:CDS 40.0%
TGCGAGCCTCCTATTTATAT+AGG + chr1_3:15900850-15900869 Msa0106470:intron 40.0%
GCGAGCCTCCTATTTATATA+GGG + chr1_3:15900851-15900870 Msa0106470:intron 40.0%
CGAGCCTCCTATTTATATAG+GGG + chr1_3:15900852-15900871 Msa0106470:intron 40.0%
GCATCCCCTATATAAATAGG+AGG - chr1_3:15900859-15900878 None:intergenic 40.0%
CAAATCTGGTAGGCAAATAC+TGG - chr1_3:15900974-15900993 None:intergenic 40.0%
CAGTATTTGCCTACCAGATT+TGG + chr1_3:15900972-15900991 Msa0106470:intron 40.0%
!! GCAAATTTGAAGGGTGTTTC+AGG + chr1_3:15900996-15901015 Msa0106470:CDS 40.0%
GGAAAAAGTTAAGCCAAGGA+TGG + chr1_3:15901087-15901106 Msa0106470:CDS 40.0%
GTGTAAATTCGTACCATCCT+TGG - chr1_3:15901103-15901122 None:intergenic 40.0%
TACACAAGAGAACGGTTTAG+GGG + chr1_3:15901118-15901137 Msa0106470:CDS 40.0%
AACTTGCAACACTACATCTC+TGG - chr1_3:15901177-15901196 None:intergenic 40.0%
TCTCGCATCCATGACCTAAA+TGG - chr1_3:15896436-15896455 None:intergenic 45.0%
!! GATGGATTGGTATCTTACGG+CGG - chr1_3:15896598-15896617 None:intergenic 45.0%
GCTGCTACTGTTATGTGTCA+AGG - chr1_3:15896875-15896894 None:intergenic 45.0%
CTGTCACTAACCATTCATGG+TGG - chr1_3:15896897-15896916 None:intergenic 45.0%
CCTCTGTCACTAACCATTCA+TGG - chr1_3:15896900-15896919 None:intergenic 45.0%
CCATGAATGGTTAGTGACAG+AGG + chr1_3:15896897-15896916 Msa0106470:intron 45.0%
GCAAGATCGTGATTAGCAAG+AGG + chr1_3:15896921-15896940 Msa0106470:intron 45.0%
GCAAAAAATCATCCAAGGGC+TGG - chr1_3:15897044-15897063 None:intergenic 45.0%
GGTCATGGATACAAGACATG+TGG - chr1_3:15897066-15897085 None:intergenic 45.0%
TGCAGTTGCTTGTAGTGTTC+TGG + chr1_3:15897478-15897497 Msa0106470:intron 45.0%
TTAATTTCGGGCCGAGTACA+TGG + chr1_3:15897681-15897700 Msa0106470:intron 45.0%
CTTTAATCGGGCCATGTACT+CGG - chr1_3:15897695-15897714 None:intergenic 45.0%
CCGATTAAAGTTAACGCACC+TGG + chr1_3:15897705-15897724 Msa0106470:intron 45.0%
GAAGAAAGGATCCGATCACA+GGG - chr1_3:15897833-15897852 None:intergenic 45.0%
ACAGGTAAGTTCCTAGAGCA+AGG - chr1_3:15897875-15897894 None:intergenic 45.0%
ATAAGAACAGCGCACAACAC+AGG - chr1_3:15897893-15897912 None:intergenic 45.0%
TTCTTATGCTCGTTGCCTTG+CGG + chr1_3:15897906-15897925 Msa0106470:intron 45.0%
ACATTACGGCCAAGGATTTC+TGG - chr1_3:15897932-15897951 None:intergenic 45.0%
AACCATGTGCACCCAAATAG+GGG - chr1_3:15898019-15898038 None:intergenic 45.0%
TTTCAATCCTAGACGCCAGA+CGG - chr1_3:15898441-15898460 None:intergenic 45.0%
! CTGGCGTCTAGGATTGAAAA+AGG + chr1_3:15898442-15898461 Msa0106470:CDS 45.0%
CAACGCTACTCAATTGGCAT+TGG + chr1_3:15898509-15898528 Msa0106470:CDS 45.0%
CATAGAAAGGCTCTTCAGTC+CGG - chr1_3:15898628-15898647 None:intergenic 45.0%
TGCCGAATCCAGGAAATCAA+AGG - chr1_3:15898693-15898712 None:intergenic 45.0%
AATGCACCAGTAGGGTTTGA+AGG - chr1_3:15898716-15898735 None:intergenic 45.0%
TGCTTTGCAATGCACCAGTA+GGG - chr1_3:15898724-15898743 None:intergenic 45.0%
TTGCTTTGCAATGCACCAGT+AGG - chr1_3:15898725-15898744 None:intergenic 45.0%
TACTGGTGCATTGCAAAGCA+AGG + chr1_3:15898724-15898743 Msa0106470:CDS 45.0%
TTGCAAAGCAAGGATTCTGC+TGG + chr1_3:15898734-15898753 Msa0106470:CDS 45.0%
CAAGGATTCTGCTGGATGTA+TGG + chr1_3:15898742-15898761 Msa0106470:intron 45.0%
CAAGAAAGAAGCGGAAATCG+CGG + chr1_3:15898831-15898850 Msa0106470:intron 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_3:15898918-15898937 Msa0106470:intron 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_3:15899144-15899163 Msa0106470:intron 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_3:15899149-15899168 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_3:15899147-15899166 Msa0106470:intron 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_3:15899152-15899171 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_3:15898918-15898937 Msa0106470:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_3:15899299-15899318 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_3:15899300-15899319 None:intergenic 45.0%
TGTTAGTGTCGCATCTGAGT+TGG - chr1_3:15899324-15899343 None:intergenic 45.0%
! TCACGTTTTCAAACTACGGC+TGG + chr1_3:15899366-15899385 Msa0106470:intron 45.0%
! CACCTCCTCTGTCATTTGAA+AGG + chr1_3:15899645-15899664 Msa0106470:intron 45.0%
GACCTTTCAAATGACAGAGG+AGG - chr1_3:15899650-15899669 None:intergenic 45.0%
AACCAGTATAGCCGGTTATC+AGG + chr1_3:15900154-15900173 Msa0106470:intron 45.0%
AACCTGATAACCGGCTATAC+TGG - chr1_3:15900159-15900178 None:intergenic 45.0%
AGCCTCCACTGAAAATGATG+AGG + chr1_3:15899144-15899163 Msa0106470:intron 45.0%
! CTCCTCATCATTTTCAGTGG+AGG - chr1_3:15899149-15899168 None:intergenic 45.0%
CTCCACTGAAAATGATGAGG+AGG + chr1_3:15899147-15899166 Msa0106470:intron 45.0%
! TGCCTCCTCATCATTTTCAG+TGG - chr1_3:15899152-15899171 None:intergenic 45.0%
! TTTCAGATTGAAGGCATGCC+CGG + chr1_3:15898918-15898937 Msa0106470:intron 45.0%
ATTGATGTGTGTCAGACACC+GGG - chr1_3:15899299-15899318 None:intergenic 45.0%
CATTGATGTGTGTCAGACAC+CGG - chr1_3:15899300-15899319 None:intergenic 45.0%
CGCAGACTAACAAGACAGTA+AGG - chr1_3:15900834-15900853 None:intergenic 45.0%
! TTTTCCGGCCTTTGTCATCA+AGG - chr1_3:15901073-15901092 None:intergenic 45.0%
AAGAGAACGGTTTAGGGGAA+GGG + chr1_3:15901123-15901142 Msa0106470:CDS 45.0%
CTCTTACTTCTGAGTGATCC+TGG + chr1_3:15901313-15901332 Msa0106470:three_prime_UTR 45.0%
TGGGTACAGGTACGAGATTA+CGG - chr1_3:15901665-15901684 None:intergenic 45.0%
!! TATTTAAACTTAAATTAATA+AGG - chr1_3:15898152-15898171 None:intergenic 5.0%
!!! ATTTTTTTAAAATTAAGATA+CGG - chr1_3:15901640-15901659 None:intergenic 5.0%
! CAAGATGATGATGAGTGGGG+AGG - chr1_3:15896572-15896591 None:intergenic 50.0%
! CGGCAAGATGATGATGAGTG+GGG - chr1_3:15896575-15896594 None:intergenic 50.0%
! GCGGCAAGATGATGATGAGT+GGG - chr1_3:15896576-15896595 None:intergenic 50.0%
CAGTAGCAACAGCGATGGAT+TGG - chr1_3:15896611-15896630 None:intergenic 50.0%
ACAGTAGCAGCCACCATGAA+TGG + chr1_3:15896884-15896903 Msa0106470:intron 50.0%
CTCTTCCTCCTCTGTTCCAA+CGG - chr1_3:15896952-15896971 None:intergenic 50.0%
GTTGGAACAGAGGAGGAAGA+GGG + chr1_3:15896951-15896970 Msa0106470:intron 50.0%
GGAAGAAAGGATCCGATCAC+AGG - chr1_3:15897834-15897853 None:intergenic 50.0%
GGATCCTTTCTTCCCATGAC+TGG + chr1_3:15897840-15897859 Msa0106470:intron 50.0%
GGATCCAGTCATGGGAAGAA+AGG - chr1_3:15897847-15897866 None:intergenic 50.0%
AGGCAGAAGGATCCAGTCAT+GGG - chr1_3:15897855-15897874 None:intergenic 50.0%
AAGGCAGAAGGATCCAGTCA+TGG - chr1_3:15897856-15897875 None:intergenic 50.0%
AGTTCCTAGAGCAAGGCAGA+AGG - chr1_3:15897868-15897887 None:intergenic 50.0%
TGTGCACAACATTACGGCCA+AGG - chr1_3:15897940-15897959 None:intergenic 50.0%
ACCATGTGCACCCAAATAGG+GGG - chr1_3:15898018-15898037 None:intergenic 50.0%
CAGTTGCGACAGTCGAAAGT+TGG - chr1_3:15898400-15898419 None:intergenic 50.0%
GTCGCAACTGTCACTATTCC+TGG + chr1_3:15898410-15898429 Msa0106470:CDS 50.0%
GCAACTGTCACTATTCCTGG+CGG + chr1_3:15898413-15898432 Msa0106470:CDS 50.0%
! TGTTGGCTATGATTCTCCGC+TGG - chr1_3:15898779-15898798 None:intergenic 50.0%
AGACAGAGACACTGAGACGT+TGG - chr1_3:15899034-15899053 None:intergenic 50.0%
AGATGCGACACTAACACGTG+TGG + chr1_3:15899328-15899347 Msa0106470:intron 50.0%
CAGACACGACACTGAGACAT+TGG - chr1_3:15899394-15899413 None:intergenic 50.0%
ATTAGAGCAGTGCTAGCGTC+AGG + chr1_3:15899458-15899477 Msa0106470:intron 50.0%
TGGTCCACTCAAAGAGAGAG+TGG - chr1_3:15899505-15899524 None:intergenic 50.0%
TCTTGCAGACGCACGTTCAT+AGG - chr1_3:15900739-15900758 None:intergenic 50.0%
ATTCCGCTTCAGACATCCGA+TGG + chr1_3:15901023-15901042 Msa0106470:CDS 50.0%
TCACCATCGGATGTCTGAAG+CGG - chr1_3:15901029-15901048 None:intergenic 50.0%
CATCCGATGGTGAGAAACAG+TGG + chr1_3:15901036-15901055 Msa0106470:CDS 50.0%
! ACGCCACTGTTTCTCACCAT+CGG - chr1_3:15901042-15901061 None:intergenic 50.0%
! GTTCGCTGCCTTGATGACAA+AGG + chr1_3:15901062-15901081 Msa0106470:CDS 50.0%
GGCCGGAAAAAGTTAAGCCA+AGG + chr1_3:15901083-15901102 Msa0106470:CDS 50.0%
CAAGAGAACGGTTTAGGGGA+AGG + chr1_3:15901122-15901141 Msa0106470:CDS 50.0%
AGAGAACGGTTTAGGGGAAG+GGG + chr1_3:15901124-15901143 Msa0106470:CDS 50.0%
TAACGCAGTGCTGCAAGTGA+GGG - chr1_3:15901227-15901246 None:intergenic 50.0%
GGTCATGGATGCGAGACATG+TGG + chr1_3:15896440-15896459 Msa0106470:intron 55.0%
AGAGGGAAACGTGAGGACGA+TGG - chr1_3:15896526-15896545 None:intergenic 55.0%
AGGAGGAAGAGGGAAACGTG+AGG - chr1_3:15896533-15896552 None:intergenic 55.0%
GTCGGAACAGAGGAGGAAGA+GGG - chr1_3:15896543-15896562 None:intergenic 55.0%
AGTCGGAACAGAGGAGGAAG+AGG - chr1_3:15896544-15896563 None:intergenic 55.0%
GTCATGAGTCGGAACAGAGG+AGG - chr1_3:15896550-15896569 None:intergenic 55.0%
GAGGTCATGAGTCGGAACAG+AGG - chr1_3:15896553-15896572 None:intergenic 55.0%
TGAGTGGGGAGGTCATGAGT+CGG - chr1_3:15896561-15896580 None:intergenic 55.0%
! GGCGGCAAGATGATGATGAG+TGG - chr1_3:15896577-15896596 None:intergenic 55.0%
! GGATTGGTATCTTACGGCGG+CGG - chr1_3:15896595-15896614 None:intergenic 55.0%
CGTTGGAACAGAGGAGGAAG+AGG + chr1_3:15896950-15896969 Msa0106470:intron 55.0%
GTTAACGCACCTGGGGTAAG+AGG + chr1_3:15897714-15897733 Msa0106470:intron 55.0%
GATCACAGGGCAGGCAGAAA+GGG - chr1_3:15897820-15897839 None:intergenic 55.0%
CTTTCTGCCTGCCCTGTGAT+CGG + chr1_3:15897819-15897838 Msa0106470:intron 55.0%
AAAGGATCCGATCACAGGGC+AGG - chr1_3:15897829-15897848 None:intergenic 55.0%
GGATCCTTCTGCCTTGCTCT+AGG + chr1_3:15897861-15897880 Msa0106470:intron 55.0%
ACCCCCTATTTGGGTGCACA+TGG + chr1_3:15898014-15898033 Msa0106470:intron 55.0%
!! GGTTTGAAGGTGCCGAATCC+AGG - chr1_3:15898703-15898722 None:intergenic 55.0%
TCGGCACCTTCAAACCCTAC+TGG + chr1_3:15898707-15898726 Msa0106470:CDS 55.0%
TGTCAGTGTCGCGTCTGAGT+TGG - chr1_3:15898964-15898983 None:intergenic 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_3:15899120-15899139 Msa0106470:intron 55.0%
TTGTGGAACTGCAGGTGCAC+AGG + chr1_3:15899120-15899139 Msa0106470:intron 55.0%
AGACGCGACACTAACACGTG+TGG + chr1_3:15900509-15900528 Msa0106470:intron 55.0%
! GCTGCCTTGATGACAAAGGC+CGG + chr1_3:15901066-15901085 Msa0106470:CDS 55.0%
CTAACGCAGTGCTGCAAGTG+AGG - chr1_3:15901228-15901247 None:intergenic 55.0%
TTAGCAAGAGGGGCAGCCGT+TGG + chr1_3:15896933-15896952 Msa0106470:intron 60.0%
GAGGAGGAAGAGGGAACGTG+AGG + chr1_3:15896960-15896979 Msa0106470:intron 60.0%
TTTGCGGCTCCTCTTACCCC+AGG - chr1_3:15897726-15897745 None:intergenic 60.0%
CGATCACAGGGCAGGCAGAA+AGG - chr1_3:15897821-15897840 None:intergenic 60.0%
GCCTTGCGGCCAGAAATCCT+TGG + chr1_3:15897920-15897939 Msa0106470:intron 60.0%
!! GCCAAGGATTTCTGGCCGCA+AGG - chr1_3:15897924-15897943 None:intergenic 60.0%
AGACGCGACACTGACACGTG+TGG + chr1_3:15898968-15898987 Msa0106470:intron 60.0%
GTCCATACCGGGTACGCGTA+CGG + chr1_3:15901378-15901397 Msa0106470:three_prime_UTR 60.0%
TACCGTACGCGTACCCGGTA+TGG - chr1_3:15901383-15901402 None:intergenic 60.0%
! ACGAGTACCGTACGCGTACC+CGG - chr1_3:15901388-15901407 None:intergenic 60.0%
AGGGGCAGCCGTTGGAACAG+AGG + chr1_3:15896941-15896960 Msa0106470:intron 65.0%
GGCAGCCGTTGGAACAGAGG+AGG + chr1_3:15896944-15896963 Msa0106470:intron 65.0%
CTATTCCTGGCGGCACCGTC+TGG + chr1_3:15898423-15898442 Msa0106470:CDS 65.0%
GGGTACGCGTACGGTACTCG+TGG + chr1_3:15901387-15901406 Msa0106470:three_prime_UTR 65.0%
!! AGACGCCAGACGGTGCCGCC+AGG - chr1_3:15898431-15898450 None:intergenic 75.0%
GGCGGCACCGTCTGGCGTCT+AGG + chr1_3:15898431-15898450 Msa0106470:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 15895571 15901696 15895571 ID=Msa0106470;Name=Msa0106470
chr1_3 mRNA 15895571 15901696 15895571 ID=Msa0106470-mRNA-1;Parent=Msa0106470;Name=Msa0106470-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136|0.33|0.5|1|0.66|0.75|4|449|279
chr1_3 exon 15895571 15895769 15895571 ID=Msa0106470-mRNA-1:exon:6034;Parent=Msa0106470-mRNA-1
chr1_3 exon 15898362 15898758 15898362 ID=Msa0106470-mRNA-1:exon:6035;Parent=Msa0106470-mRNA-1
chr1_3 exon 15900736 15900842 15900736 ID=Msa0106470-mRNA-1:exon:6036;Parent=Msa0106470-mRNA-1
chr1_3 exon 15900975 15901696 15900975 ID=Msa0106470-mRNA-1:exon:6037;Parent=Msa0106470-mRNA-1
chr1_3 five_prime_UTR 15895571 15895706 15895571 ID=Msa0106470-mRNA-1:five_prime_utr;Parent=Msa0106470-mRNA-1
chr1_3 CDS 15895707 15895769 15895707 ID=Msa0106470-mRNA-1:cds;Parent=Msa0106470-mRNA-1
chr1_3 CDS 15898362 15898758 15898362 ID=Msa0106470-mRNA-1:cds;Parent=Msa0106470-mRNA-1
chr1_3 CDS 15900736 15900842 15900736 ID=Msa0106470-mRNA-1:cds;Parent=Msa0106470-mRNA-1
chr1_3 CDS 15900975 15901247 15900975 ID=Msa0106470-mRNA-1:cds;Parent=Msa0106470-mRNA-1
chr1_3 three_prime_UTR 15901248 15901696 15901248 ID=Msa0106470-mRNA-1:three_prime_utr;Parent=Msa0106470-mRNA-1
Gene Sequence

>Msa0106470

ATGCCTCTTCTTCCTTCTTTCCACAAGCTCATTCTTCCAACAACCCTTCAATCTAAGCAATTGAGGATTCCGGATAATTTTCTGAGGAAACACGGGGACCAACTTTCGACTGTCGCAACTGTCACTATTCCTGGCGGCACCGTCTGGCGTCTAGGATTGAAAAAGGTTGGCAACCGTATTTGTTTTGTGGATGGCTGGCAAGATTTTATTCAACGCTACTCAATTGGCATTGGATACTTACTACTATTCACATACGAAGGAAGGTCAAATTTCATCGTTTATATCTTCCGTACTACTGAGTTAAACTATGATTCAACAATGAGAAGCCGGACTGAAGAGCCTTTCTATGAAGACTATAATTATGTTTTTGAAGGCATTGAAGATATCGACTCCTTTGATTTCCTGGATTCGGCACCTTCAAACCCTACTGGTGCATTGCAAAGCAAGGATTCTGCTGGATCCTATGAACGTGCGTCTGCAAGAGTAAGACACAATGTGTCAGATGAAGAAAGAGAAAGGGCAATGAATGAGGCAAAAGCATTTGTACCAACTAATCCTTACTGTCTTTATTTGCCTACCAGATTTGGAGCAAATTTGAAGGGTGTTTCAGGTTTTATTCCGCTTCAGACATCCGATGGTGAGAAACAGTGGCGTGTTCGCTGCCTTGATGACAAAGGCCGGAAAAAGTTAAGCCAAGGATGGTACGAATTTACACAAGAGAACGGTTTAGGGGAAGGGGATATCTGTGTTTTTGAGCTGCTTAATACCAGAGATGTAGTGTTGCAAGTTACTTTGTTTCGTCTAAAAGAGGATGAACCCTCACTTGCAGCACTGCGTTAG
Protein sequence

>Msa0106470

MPLLPSFHKLILPTTLQSKQLRIPDNFLRKHGDQLSTVATVTIPGGTVWRLGLKKVGNRICFVDGWQDFIQRYSIGIGYLLLFTYEGRSNFIVYIFRTTELNYDSTMRSRTEEPFYEDYNYVFEGIEDIDSFDFLDSAPSNPTGALQSKDSAGSYERASARVRHNVSDEERERAMNEAKAFVPTNPYCLYLPTRFGANLKGVSGFIPLQTSDGEKQWRVRCLDDKGRKKLSQGWYEFTQENGLGEGDICVFELLNTRDVVLQVTLFRLKEDEPSLAALR*