Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013300 | sp|Q8L3W1|VRN1_ARATH | 48.363 | 397 | 145 | 9 | 3 | 398 | 2 | 339 | 8.48e-115 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013300 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013300 | Msa0539400 | -0.804808 | 1.808757e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013300 | MtrunA17_Chr1g0162441 | 95.872 | 436 | 15 | 2 | 1 | 436 | 1 | 433 | 0.0 | 840 |
| Msa0013300 | MtrunA17_Chr4g0033961 | 60.592 | 439 | 157 | 8 | 3 | 436 | 2 | 429 | 0.0 | 523 |
| Msa0013300 | MtrunA17_Chr1g0162411 | 49.882 | 423 | 120 | 14 | 1 | 363 | 1 | 391 | 2.46e-109 | 330 |
| Msa0013300 | MtrunA17_Chr1g0162421 | 89.655 | 58 | 6 | 0 | 21 | 78 | 7 | 64 | 2.31e-31 | 114 |
| Msa0013300 | MtrunA17_Chr1g0162431 | 83.333 | 54 | 9 | 0 | 348 | 401 | 5 | 58 | 2.87e-25 | 98.2 |
| Msa0013300 | MtrunA17_Chr5g0429931 | 50.000 | 84 | 42 | 0 | 22 | 105 | 10 | 93 | 5.67e-24 | 100 |
| Msa0013300 | MtrunA17_Chr5g0429931 | 30.387 | 181 | 93 | 6 | 221 | 395 | 89 | 242 | 1.66e-11 | 64.3 |
| Msa0013300 | MtrunA17_Chr4g0009491 | 45.455 | 99 | 54 | 0 | 7 | 105 | 225 | 323 | 5.72e-24 | 103 |
| Msa0013300 | MtrunA17_Chr4g0009491 | 41.176 | 85 | 50 | 0 | 21 | 105 | 11 | 95 | 2.93e-17 | 83.6 |
| Msa0013300 | MtrunA17_Chr3g0077461 | 44.444 | 99 | 55 | 0 | 7 | 105 | 237 | 335 | 5.76e-24 | 103 |
| Msa0013300 | MtrunA17_Chr3g0077461 | 44.681 | 94 | 51 | 1 | 22 | 115 | 22 | 114 | 1.27e-19 | 90.9 |
| Msa0013300 | MtrunA17_Chr3g0077411 | 44.037 | 109 | 60 | 1 | 7 | 115 | 25 | 132 | 7.60e-24 | 103 |
| Msa0013300 | MtrunA17_Chr3g0077411 | 46.000 | 100 | 53 | 1 | 7 | 105 | 262 | 361 | 9.68e-24 | 103 |
| Msa0013300 | MtrunA17_Chr3g0077451 | 48.235 | 85 | 44 | 0 | 21 | 105 | 10 | 94 | 1.24e-23 | 99.0 |
| Msa0013300 | MtrunA17_Chr7g0233571 | 42.857 | 105 | 60 | 0 | 3 | 107 | 6 | 110 | 2.28e-22 | 95.1 |
| Msa0013300 | MtrunA17_Chr3g0103151 | 36.170 | 141 | 80 | 2 | 7 | 147 | 12 | 142 | 2.66e-22 | 93.2 |
| Msa0013300 | MtrunA17_Chr3g0077381 | 44.444 | 99 | 55 | 0 | 7 | 105 | 247 | 345 | 3.39e-22 | 98.6 |
| Msa0013300 | MtrunA17_Chr3g0077381 | 44.706 | 85 | 47 | 0 | 21 | 105 | 34 | 118 | 7.58e-20 | 91.3 |
| Msa0013300 | MtrunA17_Chr7g0233561 | 44.444 | 99 | 55 | 0 | 7 | 105 | 18 | 116 | 7.54e-22 | 95.9 |
| Msa0013300 | MtrunA17_Chr3g0103181 | 42.424 | 99 | 55 | 1 | 7 | 105 | 12 | 108 | 2.35e-21 | 93.6 |
| Msa0013300 | MtrunA17_Chr3g0077361 | 38.793 | 116 | 65 | 2 | 7 | 116 | 40 | 155 | 3.56e-21 | 95.9 |
| Msa0013300 | MtrunA17_Chr3g0077361 | 43.662 | 71 | 40 | 0 | 7 | 77 | 289 | 359 | 1.15e-15 | 79.0 |
| Msa0013300 | MtrunA17_Chr3g0077361 | 34.848 | 132 | 72 | 5 | 268 | 395 | 380 | 501 | 1.74e-12 | 69.3 |
| Msa0013300 | MtrunA17_Chr3g0103191 | 40.741 | 108 | 60 | 2 | 1 | 108 | 8 | 111 | 7.74e-21 | 91.3 |
| Msa0013300 | MtrunA17_Chr5g0419201 | 39.604 | 101 | 61 | 0 | 7 | 107 | 16 | 116 | 1.68e-20 | 89.0 |
| Msa0013300 | MtrunA17_Chr3g0131891 | 41.414 | 99 | 58 | 0 | 7 | 105 | 19 | 117 | 3.90e-20 | 90.9 |
| Msa0013300 | MtrunA17_Chr3g0131891 | 27.751 | 209 | 121 | 7 | 209 | 395 | 103 | 303 | 9.92e-15 | 75.1 |
| Msa0013300 | MtrunA17_Chr7g0233541 | 44.578 | 83 | 46 | 0 | 23 | 105 | 2 | 84 | 1.28e-19 | 89.0 |
| Msa0013300 | MtrunA17_Chr8g0390841 | 41.000 | 100 | 59 | 0 | 7 | 106 | 39 | 138 | 2.39e-19 | 90.5 |
| Msa0013300 | MtrunA17_Chr8g0390841 | 28.750 | 160 | 100 | 5 | 243 | 401 | 191 | 337 | 6.59e-14 | 73.6 |
| Msa0013300 | MtrunA17_Chr1g0163071 | 36.585 | 123 | 65 | 2 | 23 | 142 | 2 | 114 | 9.80e-19 | 86.7 |
| Msa0013300 | MtrunA17_Chr1g0163071 | 34.513 | 113 | 66 | 2 | 287 | 399 | 187 | 291 | 1.32e-13 | 71.2 |
| Msa0013300 | MtrunA17_Chr7g0233531 | 41.837 | 98 | 54 | 1 | 23 | 120 | 2 | 96 | 2.00e-18 | 85.1 |
| Msa0013300 | MtrunA17_Chr7g0233521 | 42.169 | 83 | 48 | 0 | 23 | 105 | 2 | 84 | 8.62e-18 | 83.2 |
| Msa0013300 | MtrunA17_Chr3g0103171 | 38.710 | 93 | 57 | 0 | 22 | 114 | 5 | 97 | 1.17e-17 | 82.4 |
| Msa0013300 | MtrunA17_Chr1g0154041 | 23.632 | 402 | 240 | 12 | 4 | 399 | 13 | 353 | 1.44e-17 | 85.1 |
| Msa0013300 | MtrunA17_Chr1g0154111 | 23.810 | 378 | 224 | 11 | 19 | 391 | 38 | 356 | 2.64e-15 | 78.2 |
| Msa0013300 | MtrunA17_Chr1g0208771 | 36.364 | 121 | 62 | 3 | 22 | 142 | 12 | 117 | 2.19e-14 | 74.7 |
| Msa0013300 | MtrunA17_Chr1g0208771 | 34.091 | 132 | 74 | 5 | 274 | 403 | 178 | 298 | 4.10e-14 | 73.9 |
| Msa0013300 | MtrunA17_Chr1g0163191 | 34.234 | 111 | 66 | 3 | 5 | 115 | 7 | 110 | 9.24e-13 | 66.2 |
| Msa0013300 | MtrunA17_Chr1g0154161 | 44.304 | 79 | 44 | 0 | 19 | 97 | 42 | 120 | 1.76e-12 | 68.2 |
| Msa0013300 | MtrunA17_Chr3g0077421 | 36.232 | 138 | 70 | 6 | 267 | 396 | 70 | 197 | 3.21e-12 | 65.5 |
| Msa0013300 | MtrunA17_Chr3g0077421 | 41.667 | 72 | 41 | 1 | 51 | 122 | 1 | 71 | 9.06e-11 | 61.2 |
| Msa0013300 | MtrunA17_Chr3g0077441 | 36.232 | 138 | 70 | 6 | 267 | 396 | 70 | 197 | 3.21e-12 | 65.5 |
| Msa0013300 | MtrunA17_Chr3g0077441 | 41.667 | 72 | 41 | 1 | 51 | 122 | 1 | 71 | 9.06e-11 | 61.2 |
| Msa0013300 | MtrunA17_Chr1g0154101 | 37.931 | 87 | 53 | 1 | 11 | 97 | 187 | 272 | 9.57e-12 | 67.4 |
| Msa0013300 | MtrunA17_Chr1g0154101 | 41.772 | 79 | 46 | 0 | 19 | 97 | 37 | 115 | 4.64e-11 | 65.1 |
| Msa0013300 | MtrunA17_Chr1g0154211 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 1.37e-11 | 65.9 |
| Msa0013300 | MtrunA17_Chr1g0154131 | 39.560 | 91 | 54 | 1 | 7 | 97 | 26 | 115 | 1.75e-11 | 65.9 |
| Msa0013300 | MtrunA17_Chr1g0154131 | 40.506 | 79 | 47 | 0 | 19 | 97 | 194 | 272 | 3.14e-11 | 65.1 |
| Msa0013300 | MtrunA17_Chr1g0154171 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 3.90e-11 | 64.3 |
| Msa0013300 | MtrunA17_Chr1g0163181 | 33.663 | 101 | 61 | 2 | 5 | 105 | 7 | 101 | 4.09e-11 | 64.7 |
| Msa0013300 | MtrunA17_Chr6g0467351 | 32.727 | 110 | 71 | 2 | 7 | 115 | 15 | 122 | 4.87e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013300 | AT3G18990.1 | 48.363 | 397 | 145 | 9 | 3 | 398 | 2 | 339 | 8.62e-116 | 343 |
| Msa0013300 | AT3G18990.2 | 48.111 | 397 | 146 | 9 | 3 | 398 | 2 | 339 | 1.38e-114 | 341 |
| Msa0013300 | AT1G49480.3 | 64.417 | 163 | 53 | 4 | 237 | 398 | 66 | 224 | 9.76e-64 | 205 |
| Msa0013300 | AT1G49480.1 | 64.417 | 163 | 53 | 4 | 237 | 398 | 66 | 224 | 9.76e-64 | 205 |
| Msa0013300 | AT1G49480.2 | 64.417 | 163 | 53 | 4 | 237 | 398 | 66 | 224 | 9.76e-64 | 205 |
| Msa0013300 | AT4G01580.1 | 42.718 | 103 | 59 | 0 | 3 | 105 | 26 | 128 | 4.73e-24 | 99.4 |
| Msa0013300 | AT3G18960.2 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 8.87e-23 | 95.9 |
| Msa0013300 | AT3G18960.1 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 9.36e-23 | 96.3 |
| Msa0013300 | AT1G49475.1 | 35.849 | 106 | 64 | 2 | 3 | 105 | 27 | 131 | 6.93e-17 | 79.0 |
| Msa0013300 | AT3G18960.3 | 41.667 | 84 | 49 | 0 | 22 | 105 | 8 | 91 | 1.31e-16 | 77.8 |
Find 109 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACATTAGAGAACAATTT+AGG | 0.145889 | 1_1:-20625146 | Msa0013300:CDS |
| AAGAATTTGAACGGTGTTTC+AGG | 0.187714 | 1_1:-20625263 | Msa0013300:CDS |
| AAAAGGTTGACAACCGAATT+TGG | 0.209979 | 1_1:-20626413 | Msa0013300:CDS |
| TCATTGCAGAATTTGTTTAA+TGG | 0.251640 | 1_1:-20626066 | Msa0013300:CDS |
| CTAAACTCAACCACGTTAAC+TGG | 0.274983 | 1_1:-20626038 | Msa0013300:CDS |
| CATTGCAGAATTTGTTTAAT+GGG | 0.276665 | 1_1:-20626065 | Msa0013300:CDS |
| TTATTAACCCCTTCCTCATT+AGG | 0.282526 | 1_1:+20625898 | None:intergenic |
| TATCGACTCCTTTGAATTCC+TGG | 0.294296 | 1_1:-20626184 | Msa0013300:CDS |
| TATTTCCTAAGAAAATTATC+TGG | 0.317191 | 1_1:+20626504 | None:intergenic |
| AGACTCATGAAATTAAAATT+AGG | 0.322399 | 1_1:-20628533 | Msa0013300:five_prime_UTR |
| TTGCCCGGCCTCCTTTATAA+AGG | 0.342429 | 1_1:+20625192 | None:intergenic |
| TTACATTAGAGAACAATTTA+GGG | 0.362987 | 1_1:-20625145 | Msa0013300:CDS |
| AGAGATTCAAAGCATAATCT+TGG | 0.363466 | 1_1:+20628349 | None:intergenic |
| CAAAGCAGGAAGGCAAATAC+TGG | 0.378699 | 1_1:+20625291 | None:intergenic |
| CGTGTAAAAGAGGACGAGTC+AGG | 0.395227 | 1_1:-20625056 | Msa0013300:CDS |
| TTACCAATTGTCTAGTTTGA+AGG | 0.397207 | 1_1:+20628267 | None:intergenic |
| ATCCCTTCAAACTAGACAAT+TGG | 0.398966 | 1_1:-20628270 | Msa0013300:intron |
| CTGGCGTCTAGGATTGAAAA+AGG | 0.407049 | 1_1:-20626430 | Msa0013300:CDS |
| TTACTCAGATCTAAATTGTT+GGG | 0.408825 | 1_1:+20628407 | None:intergenic |
| TTTCTAGTATTCACTTATGA+AGG | 0.411457 | 1_1:-20626336 | Msa0013300:CDS |
| ATTCAGTCAACCAGAGATAT+AGG | 0.424869 | 1_1:-20625979 | Msa0013300:CDS |
| ATTACTCAGATCTAAATTGT+TGG | 0.426490 | 1_1:+20628406 | None:intergenic |
| AGCCATCGACAAACCAAATT+CGG | 0.433503 | 1_1:+20626400 | None:intergenic |
| ATGGGAGACAGTGGCCTGTT+CGG | 0.436054 | 1_1:-20625217 | Msa0013300:CDS |
| CTGTTCCTGATGGCACTGTC+TGG | 0.439890 | 1_1:-20626449 | Msa0013300:CDS |
| CTTGCAATGCACCAGGAGTA+AGG | 0.441488 | 1_1:+20626145 | None:intergenic |
| GAATTTGGTTTGTCGATGGC+TGG | 0.442071 | 1_1:-20626398 | Msa0013300:CDS |
| TATATCTCTGGTTGACTGAA+TGG | 0.443124 | 1_1:+20625981 | None:intergenic |
| TTAAACAAATTCTGCAATGA+TGG | 0.444180 | 1_1:+20626069 | None:intergenic |
| CTGAATAGGGTTTGAGGAGA+AGG | 0.449747 | 1_1:-20628440 | Msa0013300:five_prime_UTR |
| TTTGTTCAACGTTACTCCAT+TGG | 0.453832 | 1_1:-20626369 | Msa0013300:CDS |
| CCTTTATAAAGGCACCGAAC+AGG | 0.459005 | 1_1:+20625203 | None:intergenic |
| ATCCTTGGCTTAACTTTGCC+CGG | 0.459163 | 1_1:+20625177 | None:intergenic |
| CAACGTTACTCCATTGGCAT+TGG | 0.459331 | 1_1:-20626363 | Msa0013300:CDS |
| TACTTTGTTTCGTGTAAAAG+AGG | 0.461446 | 1_1:-20625066 | Msa0013300:CDS |
| GATGGCACTGTCTGGCGTCT+AGG | 0.462195 | 1_1:-20626441 | Msa0013300:CDS |
| CCTGTTCGGTGCCTTTATAA+AGG | 0.463555 | 1_1:-20625203 | Msa0013300:CDS |
| TGTCTAGTTTGAAGGGATGA+AGG | 0.472503 | 1_1:+20628275 | None:intergenic |
| CACGTTAACTGGGGAGATAT+CGG | 0.483067 | 1_1:-20626027 | Msa0013300:CDS |
| GCACCAGGAGTAAGGTTTGA+AGG | 0.495370 | 1_1:+20626153 | None:intergenic |
| GGGTTGCAATAGTCGAAAGC+TGG | 0.499258 | 1_1:+20626475 | None:intergenic |
| CCCTTCAGTACGGCTTCTCA+TGG | 0.501141 | 1_1:+20626251 | None:intergenic |
| TAACAGCAGAAGAAAGAGAA+AGG | 0.504497 | 1_1:-20625491 | Msa0013300:CDS |
| GAACTGAACACCTATATCTC+TGG | 0.504709 | 1_1:+20625969 | None:intergenic |
| TAAACTCAACCACGTTAACT+GGG | 0.517161 | 1_1:-20626037 | Msa0013300:CDS |
| TACCAATTGTCTAGTTTGAA+GGG | 0.519590 | 1_1:+20628268 | None:intergenic |
| ATTAAGCTTCAGATCTCCGA+TGG | 0.523542 | 1_1:-20625236 | Msa0013300:CDS |
| AACTTGCAGTACTACCTCTC+TGG | 0.523861 | 1_1:+20625088 | None:intergenic |
| ATGTAAACTCATACCATCCT+TGG | 0.526476 | 1_1:+20625162 | None:intergenic |
| CTGTGTAACTGTAGGTGCAC+AGG | 0.526818 | 1_1:-20625589 | Msa0013300:intron |
| GGTGCCTTTATAAAGGAGGC+CGG | 0.528323 | 1_1:-20625196 | Msa0013300:CDS |
| TCACCTTCAAACCTTACTCC+TGG | 0.530653 | 1_1:-20626156 | Msa0013300:CDS |
| CATAGCAAGGCCCTTCAGTA+CGG | 0.538460 | 1_1:+20626241 | None:intergenic |
| AGACGCCAGACAGTGCCATC+AGG | 0.540335 | 1_1:+20626444 | None:intergenic |
| AACAGCAGAAGAAAGAGAAA+GGG | 0.540440 | 1_1:-20625490 | Msa0013300:CDS |
| GTCTAGTTTGAAGGGATGAA+GGG | 0.543517 | 1_1:+20628276 | None:intergenic |
| GGTTTGAAGGTGATGAATCC+AGG | 0.544026 | 1_1:+20626166 | None:intergenic |
| GGATGATAATTTGCATAGCA+AGG | 0.545527 | 1_1:+20626228 | None:intergenic |
| AGAATGAGCTTGTGAAAAGA+AGG | 0.547922 | 1_1:+20628299 | None:intergenic |
| ATTGCAGAATTTGTTTAATG+GGG | 0.548631 | 1_1:-20626064 | Msa0013300:CDS |
| TCCTGGTGCATTGCAAGACA+AGG | 0.548892 | 1_1:-20626139 | Msa0013300:CDS |
| ACCTTGTCTTGCAATGCACC+AGG | 0.549286 | 1_1:+20626138 | None:intergenic |
| ATTCAAAGCATAATCTTGGA+AGG | 0.549766 | 1_1:+20628353 | None:intergenic |
| TGATTGAAAGTTGAAAACTT+TGG | 0.552047 | 1_1:+20628379 | None:intergenic |
| GTGCCTTTATAAAGGAGGCC+GGG | 0.553894 | 1_1:-20625195 | Msa0013300:CDS |
| GCCATGAGAAGCCGTACTGA+AGG | 0.554864 | 1_1:-20626252 | Msa0013300:CDS |
| CTGACACGGTGCTGCAAGTG+AGG | 0.554904 | 1_1:+20624975 | None:intergenic |
| ACTCGACAGAATGGATTGGT+TGG | 0.561915 | 1_1:+20625441 | None:intergenic |
| CGCAGGACAACTCGACAGAA+TGG | 0.562133 | 1_1:+20625432 | None:intergenic |
| TTGCGCTATCCTAATGAGGA+AGG | 0.562431 | 1_1:-20625907 | Msa0013300:CDS |
| CTGATTTGGTTGAGCTGACA+CGG | 0.566401 | 1_1:+20624961 | None:intergenic |
| TTAGAGAACAATTTAGGGGA+AGG | 0.568521 | 1_1:-20625140 | Msa0013300:CDS |
| AACCGAATTTGGTTTGTCGA+TGG | 0.576855 | 1_1:-20626402 | Msa0013300:CDS |
| TGCAGAATTTGTTTAATGGG+GGG | 0.577486 | 1_1:-20626062 | Msa0013300:CDS |
| TTGCAGAATTTGTTTAATGG+GGG | 0.578544 | 1_1:-20626063 | Msa0013300:CDS |
| TGCGCTATCCTAATGAGGAA+GGG | 0.580496 | 1_1:-20625906 | Msa0013300:CDS |
| GAAATTGCGCTATCCTAATG+AGG | 0.581484 | 1_1:-20625911 | Msa0013300:CDS |
| TTTGCAGAAAAGAATTTGAA+CGG | 0.582980 | 1_1:-20625272 | Msa0013300:CDS |
| GGTTGCAATAGTCGAAAGCT+GGG | 0.584695 | 1_1:+20626476 | None:intergenic |
| TGATGAATCCAGGAATTCAA+AGG | 0.585718 | 1_1:+20626176 | None:intergenic |
| GCGCTATCCTAATGAGGAAG+GGG | 0.586754 | 1_1:-20625905 | Msa0013300:CDS |
| TTTGGCTTGGCTGTGAAGAA+GGG | 0.594915 | 1_1:+20625024 | None:intergenic |
| CGATATCTCCCCAGTTAACG+TGG | 0.595115 | 1_1:+20626028 | None:intergenic |
| TAGAAAGTATCCAATGCCAA+TGG | 0.595339 | 1_1:+20626353 | None:intergenic |
| CACTGCTGAAAATGATGAGG+AGG | 0.595680 | 1_1:-20625562 | Msa0013300:CDS |
| GTTCGGTGCCTTTATAAAGG+AGG | 0.598470 | 1_1:-20625200 | Msa0013300:CDS |
| GCAACCCTCACTGTTCCTGA+TGG | 0.602871 | 1_1:-20626459 | Msa0013300:CDS |
| GGCCGGGCAAAGTTAAGCCA+AGG | 0.606756 | 1_1:-20625179 | Msa0013300:CDS |
| GACAACTCGACAGAATGGAT+TGG | 0.609145 | 1_1:+20625437 | None:intergenic |
| AGAAAACTTCAAGAAAGAAG+CGG | 0.610439 | 1_1:-20625864 | Msa0013300:CDS |
| GCGCAATTTCAATCCTTCAG+TGG | 0.610517 | 1_1:+20625924 | None:intergenic |
| GATGGAGTATGATTCTTCGC+TGG | 0.611475 | 1_1:+20626087 | None:intergenic |
| AACAGGCCACTGTCTCCCAT+CGG | 0.611536 | 1_1:+20625220 | None:intergenic |
| CCATGAGAAGCCGTACTGAA+GGG | 0.612450 | 1_1:-20626251 | Msa0013300:CDS |
| GTGTAAAAGAGGACGAGTCA+GGG | 0.630504 | 1_1:-20625055 | Msa0013300:CDS |
| AATTTCATGAGTCTATCACT+CGG | 0.643910 | 1_1:+20628542 | None:intergenic |
| AGCCACTGCTGAAAATGATG+AGG | 0.645254 | 1_1:-20625565 | Msa0013300:CDS |
| GGGCAAAGTTAAGCCAAGGA+TGG | 0.645489 | 1_1:-20625175 | Msa0013300:CDS |
| TTAAGCTTCAGATCTCCGAT+GGG | 0.648569 | 1_1:-20625235 | Msa0013300:CDS |
| AGATCTCCGATGGGAGACAG+TGG | 0.649571 | 1_1:-20625226 | Msa0013300:CDS |
| CGAGCTGCTTAGAACCAGAG+AGG | 0.654792 | 1_1:-20625102 | Msa0013300:CDS |
| TGACACGGTGCTGCAAGTGA+GGG | 0.655075 | 1_1:+20624976 | None:intergenic |
| TACATTAGAGAACAATTTAG+GGG | 0.655480 | 1_1:-20625144 | Msa0013300:CDS |
| AGTGCCATCAGGAACAGTGA+GGG | 0.674235 | 1_1:+20626455 | None:intergenic |
| CAGTGCCATCAGGAACAGTG+AGG | 0.694859 | 1_1:+20626454 | None:intergenic |
| TTGTGAAAAGAAGGACGAGG+AGG | 0.697547 | 1_1:+20628308 | None:intergenic |
| AGCTTGTGAAAAGAAGGACG+AGG | 0.710821 | 1_1:+20628305 | None:intergenic |
| AAACTCAACCACGTTAACTG+GGG | 0.714026 | 1_1:-20626036 | Msa0013300:CDS |
| GTTAACTGGGGAGATATCGG+TGG | 0.726802 | 1_1:-20626024 | Msa0013300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTTGTTTAATTTA+AGG | - | chr1_1:20625004-20625023 | Msa0013300:CDS | 10.0% |
| !!! | TTCATTTTTTTTTTTTGAAT+TGG | - | chr1_1:20625271-20625290 | Msa0013300:CDS | 10.0% |
| !!! | TCATTTTTTTTTTTTGAATT+GGG | - | chr1_1:20625272-20625291 | Msa0013300:CDS | 10.0% |
| !!! | TTTAAAATCATTAATATATG+TGG | - | chr1_1:20625770-20625789 | Msa0013300:intron | 10.0% |
| !!! | CTTTTTAATTTTGATAAAAA+AGG | - | chr1_1:20626345-20626364 | Msa0013300:CDS | 10.0% |
| !! | CAAACTTTATAAAAAAAAAG+GGG | + | chr1_1:20625417-20625436 | None:intergenic | 15.0% |
| !! | CCAAACTTTATAAAAAAAAA+GGG | + | chr1_1:20625418-20625437 | None:intergenic | 15.0% |
| !! | TCCAAACTTTATAAAAAAAA+AGG | + | chr1_1:20625419-20625438 | None:intergenic | 15.0% |
| !!! | TATAAAGTTTGGATTTTTTT+AGG | - | chr1_1:20625426-20625445 | Msa0013300:intron | 15.0% |
| !!! | TATGAATTTAAGTTTACATA+AGG | - | chr1_1:20626785-20626804 | Msa0013300:intron | 15.0% |
| !!! | ATAATTTTCTTAGGAAATAT+GGG | - | chr1_1:20626994-20627013 | Msa0013300:intron | 15.0% |
| !! | AGACTCATGAAATTAAAATT+AGG | - | chr1_1:20624961-20624980 | Msa0013300:CDS | 20.0% |
| !!! | TTTTGTTTCATGTTTTTGAT+TGG | - | chr1_1:20625296-20625315 | Msa0013300:CDS | 20.0% |
| !!! | CCCTTTTTTTTTATAAAGTT+TGG | - | chr1_1:20625415-20625434 | Msa0013300:intron | 20.0% |
| !! | AGTCTCAATTAAAATACATT+TGG | + | chr1_1:20625919-20625938 | None:intergenic | 20.0% |
| !! | TTTAATTGAGACTATCATAT+TGG | - | chr1_1:20625926-20625945 | Msa0013300:CDS | 20.0% |
| !!! | AAGCATAAAAGTATTTTTGT+TGG | + | chr1_1:20626766-20626785 | None:intergenic | 20.0% |
| !! | TTATGAGCATTACTAATATT+TGG | - | chr1_1:20626935-20626954 | Msa0013300:intron | 20.0% |
| !! | TATTTCCTAAGAAAATTATC+TGG | + | chr1_1:20626993-20627012 | None:intergenic | 20.0% |
| !!! | GATAATTTTCTTAGGAAATA+TGG | - | chr1_1:20626993-20627012 | Msa0013300:intron | 20.0% |
| !!! | TAATTTTCTTAGGAAATATG+GGG | - | chr1_1:20626995-20627014 | Msa0013300:intron | 20.0% |
| !! | TTTACATTAGAGAACAATTT+AGG | - | chr1_1:20628348-20628367 | Msa0013300:five_prime_UTR | 20.0% |
| !! | TTACATTAGAGAACAATTTA+GGG | - | chr1_1:20628349-20628368 | Msa0013300:five_prime_UTR | 20.0% |
| ! | TTTGACTAAAAAGCTGAATA+GGG | - | chr1_1:20625041-20625060 | Msa0013300:CDS | 25.0% |
| ! | TTACTCAGATCTAAATTGTT+GGG | + | chr1_1:20625090-20625109 | None:intergenic | 25.0% |
| ! | ATTACTCAGATCTAAATTGT+TGG | + | chr1_1:20625091-20625110 | None:intergenic | 25.0% |
| ! | TGATTGAAAGTTGAAAACTT+TGG | + | chr1_1:20625118-20625137 | None:intergenic | 25.0% |
| ! | TTGATGTTATGATTGTTGTA+AGG | - | chr1_1:20625325-20625344 | Msa0013300:CDS | 25.0% |
| ! | TTATGATTGTTGTAAGGAAA+GGG | - | chr1_1:20625331-20625350 | Msa0013300:CDS | 25.0% |
| !!! | ATAAAAAAAAAGGGGTATCA+GGG | + | chr1_1:20625409-20625428 | None:intergenic | 25.0% |
| !!! | TATAAAAAAAAAGGGGTATC+AGG | + | chr1_1:20625410-20625429 | None:intergenic | 25.0% |
| !!! | AATTTGATTCAGTGTTGTTT+AGG | - | chr1_1:20625553-20625572 | Msa0013300:CDS | 25.0% |
| !!! | TTTAGGTTTTGTGATTTTTC+TGG | - | chr1_1:20625570-20625589 | Msa0013300:CDS | 25.0% |
| !! | TTTTAGCCCTAAAATTGAAT+TGG | - | chr1_1:20625631-20625650 | Msa0013300:intron | 25.0% |
| !! | AACCAACCAATTCAATTTTA+GGG | + | chr1_1:20625640-20625659 | None:intergenic | 25.0% |
| !! | TAACCAACCAATTCAATTTT+AGG | + | chr1_1:20625641-20625660 | None:intergenic | 25.0% |
| !!! | TGATTTTAAAGAAAACATCG+AGG | + | chr1_1:20625760-20625779 | None:intergenic | 25.0% |
| ! | AAAAGATCAAAAGAAGTTCA+AGG | + | chr1_1:20626330-20626349 | None:intergenic | 25.0% |
| ! | AAAACCTCTTCTATTAAGTA+TGG | - | chr1_1:20626405-20626424 | Msa0013300:CDS | 25.0% |
| ! | TTCTATTAAGTATGGAAAGT+TGG | - | chr1_1:20626413-20626432 | Msa0013300:CDS | 25.0% |
| ! | AAAAACTACTCATTTCCAAA+CGG | + | chr1_1:20626456-20626475 | None:intergenic | 25.0% |
| ! | ATTAACTACCATGCTAAAAA+CGG | + | chr1_1:20626496-20626515 | None:intergenic | 25.0% |
| ! | AGACAATGAAATCATAAACA+TGG | + | chr1_1:20626869-20626888 | None:intergenic | 25.0% |
| !!! | AATGTTATTTTCAATTGCAG+AGG | - | chr1_1:20626964-20626983 | Msa0013300:intron | 25.0% |
| !! | TTTCTAGTATTCACTTATGA+AGG | - | chr1_1:20627158-20627177 | Msa0013300:intron | 25.0% |
| ! | TCTTCAATGTCTTCAAAAAT+AGG | + | chr1_1:20627290-20627309 | None:intergenic | 25.0% |
| ! | TTAAACAAATTCTGCAATGA+TGG | + | chr1_1:20627428-20627447 | None:intergenic | 25.0% |
| !! | TCATTGCAGAATTTGTTTAA+TGG | - | chr1_1:20627428-20627447 | Msa0013300:intron | 25.0% |
| !! | CATTGCAGAATTTGTTTAAT+GGG | - | chr1_1:20627429-20627448 | Msa0013300:intron | 25.0% |
| !! | ATTGCAGAATTTGTTTAATG+GGG | - | chr1_1:20627430-20627449 | Msa0013300:intron | 25.0% |
| ! | AATTTAATCTGTGTAACTGT+AGG | - | chr1_1:20627897-20627916 | Msa0013300:intron | 25.0% |
| ! | TTTATATAGGGGATGTATAA+TGG | - | chr1_1:20628094-20628113 | Msa0013300:intron | 25.0% |
| ! | TTTGCAGAAAAGAATTTGAA+CGG | - | chr1_1:20628222-20628241 | Msa0013300:intron | 25.0% |
| ! | TACATTAGAGAACAATTTAG+GGG | - | chr1_1:20628350-20628369 | Msa0013300:five_prime_UTR | 25.0% |
| AATTTCATGAGTCTATCACT+CGG | + | chr1_1:20624955-20624974 | None:intergenic | 30.0% | |
| GTTTGACTAAAAAGCTGAAT+AGG | - | chr1_1:20625040-20625059 | Msa0013300:CDS | 30.0% | |
| ATTCAAAGCATAATCTTGGA+AGG | + | chr1_1:20625144-20625163 | None:intergenic | 30.0% | |
| AGAGATTCAAAGCATAATCT+TGG | + | chr1_1:20625148-20625167 | None:intergenic | 30.0% | |
| ! | TACCAATTGTCTAGTTTGAA+GGG | + | chr1_1:20625229-20625248 | None:intergenic | 30.0% |
| ! | TTACCAATTGTCTAGTTTGA+AGG | + | chr1_1:20625230-20625249 | None:intergenic | 30.0% |
| GTTATGATTGTTGTAAGGAA+AGG | - | chr1_1:20625330-20625349 | Msa0013300:CDS | 30.0% | |
| ! | TTGTAAGGAAAGGGTTTTTA+GGG | - | chr1_1:20625340-20625359 | Msa0013300:CDS | 30.0% |
| !!! | AGGGTTTTGGTTGATTTTTT+AGG | - | chr1_1:20625359-20625378 | Msa0013300:intron | 30.0% |
| !!! | GGGTTTTGGTTGATTTTTTA+GGG | - | chr1_1:20625360-20625379 | Msa0013300:intron | 30.0% |
| AACTCAGTGATCAAAATCAT+GGG | + | chr1_1:20625464-20625483 | None:intergenic | 30.0% | |
| AAACTCAGTGATCAAAATCA+TGG | + | chr1_1:20625465-20625484 | None:intergenic | 30.0% | |
| !! | ATGATTTTGATCACTGAGTT+TGG | - | chr1_1:20625464-20625483 | Msa0013300:CDS | 30.0% |
| TCTGTTATGATTCTTGATGA+AGG | - | chr1_1:20625491-20625510 | Msa0013300:CDS | 30.0% | |
| CTGTTATGATTCTTGATGAA+GGG | - | chr1_1:20625492-20625511 | Msa0013300:CDS | 30.0% | |
| CTTTGAATGAGAAATTCTTG+TGG | - | chr1_1:20625684-20625703 | Msa0013300:intron | 30.0% | |
| CATTAATATATGTGGTTCAG+TGG | - | chr1_1:20625778-20625797 | Msa0013300:intron | 30.0% | |
| CACTTATTAAGTATGACCTT+TGG | - | chr1_1:20625996-20626015 | Msa0013300:CDS | 30.0% | |
| ATTAACTACCATGCTGAAAA+TGG | + | chr1_1:20626072-20626091 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTCACTCATTCAA+AGG | + | chr1_1:20626246-20626265 | None:intergenic | 30.0% |
| TCAAAAGAAGTTCAAGGATT+TGG | + | chr1_1:20626324-20626343 | None:intergenic | 30.0% | |
| TTGCATATCTAGGAAATTTG+AGG | + | chr1_1:20626381-20626400 | None:intergenic | 30.0% | |
| ! | GGTTTTTCATTTGCATATCT+AGG | + | chr1_1:20626391-20626410 | None:intergenic | 30.0% |
| CTTTCCATACTTAATAGAAG+AGG | + | chr1_1:20626412-20626431 | None:intergenic | 30.0% | |
| ! | TTTTTAACAGGTCATGTACT+CGG | + | chr1_1:20626606-20626625 | None:intergenic | 30.0% |
| !!! | AAAGGTGCGTTTTTTTTAAC+AGG | + | chr1_1:20626618-20626637 | None:intergenic | 30.0% |
| TTTAAACTCGAGATTTGACT+CGG | + | chr1_1:20626900-20626919 | None:intergenic | 30.0% | |
| ! | GGATTCCAGATAATTTTCTT+AGG | - | chr1_1:20626985-20627004 | Msa0013300:intron | 30.0% |
| ! | TTGCAGAATTTGTTTAATGG+GGG | - | chr1_1:20627431-20627450 | Msa0013300:intron | 30.0% |
| AGAAAACTTCAAGAAAGAAG+CGG | - | chr1_1:20627630-20627649 | Msa0013300:intron | 30.0% | |
| CTTATCTAAAAGAGCTTACT+TGG | + | chr1_1:20627665-20627684 | None:intergenic | 30.0% | |
| !!! | TCACCTTTTGAAATTATGAC+CGG | - | chr1_1:20627792-20627811 | Msa0013300:intron | 30.0% |
| CATCCCCTATATAAATAAGA+GGG | + | chr1_1:20628089-20628108 | None:intergenic | 30.0% | |
| ACATCCCCTATATAAATAAG+AGG | + | chr1_1:20628090-20628109 | None:intergenic | 30.0% | |
| ! | TACTTTGTTTCGTGTAAAAG+AGG | - | chr1_1:20628428-20628447 | Msa0013300:five_prime_UTR | 30.0% |
| AAAAAGCTGAATAGGGTTTG+AGG | - | chr1_1:20625048-20625067 | Msa0013300:CDS | 35.0% | |
| AGAATGAGCTTGTGAAAAGA+AGG | + | chr1_1:20625198-20625217 | None:intergenic | 35.0% | |
| ATCCCTTCAAACTAGACAAT+TGG | - | chr1_1:20625224-20625243 | Msa0013300:CDS | 35.0% | |
| ! | GTTGTAAGGAAAGGGTTTTT+AGG | - | chr1_1:20625339-20625358 | Msa0013300:CDS | 35.0% |
| !!! | GGTTGATTTTTTAGGGTATG+TGG | - | chr1_1:20625367-20625386 | Msa0013300:intron | 35.0% |
| !! | GTGTTGAAATTTTGATCACC+AGG | - | chr1_1:20625596-20625615 | Msa0013300:intron | 35.0% |
| AGCCCTAAAATTGAATTGGT+TGG | - | chr1_1:20625635-20625654 | Msa0013300:intron | 35.0% | |
| !! | GTTAGTTTGTTTGTGTCTAG+TGG | - | chr1_1:20625657-20625676 | Msa0013300:intron | 35.0% |
| TACTGGCAATAACAATCCAA+AGG | + | chr1_1:20626015-20626034 | None:intergenic | 35.0% | |
| TGTTATTGCCAGTAGCAATT+TGG | - | chr1_1:20626021-20626040 | Msa0013300:CDS | 35.0% | |
| ACACATTTCCAAATTGCTAC+TGG | + | chr1_1:20626032-20626051 | None:intergenic | 35.0% | |
| ! | ATGAATCTCCATTTTCAGCA+TGG | - | chr1_1:20626061-20626080 | Msa0013300:CDS | 35.0% |
| !!! | AAAGGTGCGTTGTTTTTAAC+CGG | + | chr1_1:20626228-20626247 | None:intergenic | 35.0% |
| ! | GGTTTTACATTTGCAGATGT+AGG | + | chr1_1:20626279-20626298 | None:intergenic | 35.0% |
| !!! | ATGAATCTCCGTTTTTAGCA+TGG | - | chr1_1:20626485-20626504 | Msa0013300:CDS | 35.0% |
| !! | AATTGGTTCGACCTAAGTAT+GGG | + | chr1_1:20626704-20626723 | None:intergenic | 35.0% |
| !! | AAATTGGTTCGACCTAAGTA+TGG | + | chr1_1:20626705-20626724 | None:intergenic | 35.0% |
| AAAAGGTTGACAACCGAATT+TGG | - | chr1_1:20627081-20627100 | Msa0013300:intron | 35.0% | |
| TTTGTTCAACGTTACTCCAT+TGG | - | chr1_1:20627125-20627144 | Msa0013300:intron | 35.0% | |
| !! | TAGAAAGTATCCAATGCCAA+TGG | + | chr1_1:20627144-20627163 | None:intergenic | 35.0% |
| ! | GGATGATAATTTGCATAGCA+AGG | + | chr1_1:20627269-20627288 | None:intergenic | 35.0% |
| TGATGAATCCAGGAATTCAA+AGG | + | chr1_1:20627321-20627340 | None:intergenic | 35.0% | |
| !! | TTGCAAGACAAGGTTTTTAG+TGG | - | chr1_1:20627365-20627384 | Msa0013300:intron | 35.0% |
| !!! | CAAGGTTTTTAGTGGATCTT+TGG | - | chr1_1:20627373-20627392 | Msa0013300:intron | 35.0% |
| ! | TGCAGAATTTGTTTAATGGG+GGG | - | chr1_1:20627432-20627451 | Msa0013300:intron | 35.0% |
| TAAACTCAACCACGTTAACT+GGG | - | chr1_1:20627457-20627476 | Msa0013300:intron | 35.0% | |
| TATATCTCTGGTTGACTGAA+TGG | + | chr1_1:20627516-20627535 | None:intergenic | 35.0% | |
| ATTCAGTCAACCAGAGATAT+AGG | - | chr1_1:20627515-20627534 | Msa0013300:intron | 35.0% | |
| GAGTTTAAAAAGTCCACTGA+AGG | - | chr1_1:20627557-20627576 | Msa0013300:intron | 35.0% | |
| TTATTAACCCCTTCCTCATT+AGG | + | chr1_1:20627599-20627618 | None:intergenic | 35.0% | |
| !! | GCACTGACATTTTAGATCAA+AGG | - | chr1_1:20627714-20627733 | Msa0013300:intron | 35.0% |
| ATCATGTATGTCAGACACTT+GGG | + | chr1_1:20627744-20627763 | None:intergenic | 35.0% | |
| AATCATGTATGTCAGACACT+TGG | + | chr1_1:20627745-20627764 | None:intergenic | 35.0% | |
| ACACCGGTCATAATTTCAAA+AGG | + | chr1_1:20627798-20627817 | None:intergenic | 35.0% | |
| TAACAGCAGAAGAAAGAGAA+AGG | - | chr1_1:20628003-20628022 | Msa0013300:intron | 35.0% | |
| AACAGCAGAAGAAAGAGAAA+GGG | - | chr1_1:20628004-20628023 | Msa0013300:intron | 35.0% | |
| ! | CAAATTCTTTTCTGCAAAGC+AGG | + | chr1_1:20628220-20628239 | None:intergenic | 35.0% |
| AAGAATTTGAACGGTGTTTC+AGG | - | chr1_1:20628231-20628250 | Msa0013300:intron | 35.0% | |
| ATGTAAACTCATACCATCCT+TGG | + | chr1_1:20628335-20628354 | None:intergenic | 35.0% | |
| TTAGAGAACAATTTAGGGGA+AGG | - | chr1_1:20628354-20628373 | Msa0013300:five_prime_UTR | 35.0% | |
| ! | TTTTTGCATGGCTCACATTT+TGG | + | chr1_1:20628491-20628510 | None:intergenic | 35.0% |
| ! | GTCTAGTTTGAAGGGATGAA+GGG | + | chr1_1:20625221-20625240 | None:intergenic | 40.0% |
| ! | TGTCTAGTTTGAAGGGATGA+AGG | + | chr1_1:20625222-20625241 | None:intergenic | 40.0% |
| !!! | GGAAAGGGTTTTTAGGGTTT+TGG | - | chr1_1:20625346-20625365 | Msa0013300:intron | 40.0% |
| CTAAAATCAACTCAGCAACC+TGG | + | chr1_1:20625617-20625636 | None:intergenic | 40.0% | |
| ATCTCAAACCTAATCGCAGA+TGG | - | chr1_1:20626154-20626173 | Msa0013300:CDS | 40.0% | |
| TGGTCGTGTGTGTTAATTTC+AGG | - | chr1_1:20626189-20626208 | Msa0013300:CDS | 40.0% | |
| ! | TTTTAACCGGGTCGTATACT+CGG | + | chr1_1:20626215-20626234 | None:intergenic | 40.0% |
| !!! | AAGGTGCGTTGTTTTTAACC+GGG | + | chr1_1:20626227-20626246 | None:intergenic | 40.0% |
| AAACCTCTTCTCACCAGAAA+AGG | - | chr1_1:20626294-20626313 | Msa0013300:CDS | 40.0% | |
| ! | GAAAGTTGGATTGCTATTGC+TGG | - | chr1_1:20626427-20626446 | Msa0013300:CDS | 40.0% |
| ATATCGCACCTAATCACTGA+TGG | - | chr1_1:20626574-20626593 | Msa0013300:intron | 40.0% | |
| GGCAAAAACCATCAGTGATT+AGG | + | chr1_1:20626585-20626604 | None:intergenic | 40.0% | |
| CAAGGAAGTTTGAGGATTCT+CGG | + | chr1_1:20626651-20626670 | None:intergenic | 40.0% | |
| !! | AACCGAATTTGGTTTGTCGA+TGG | - | chr1_1:20627092-20627111 | Msa0013300:intron | 40.0% |
| AGCCATCGACAAACCAAATT+CGG | + | chr1_1:20627097-20627116 | None:intergenic | 40.0% | |
| !! | TATCGACTCCTTTGAATTCC+TGG | - | chr1_1:20627310-20627329 | Msa0013300:intron | 40.0% |
| CTAAACTCAACCACGTTAAC+TGG | - | chr1_1:20627456-20627475 | Msa0013300:intron | 40.0% | |
| AAACTCAACCACGTTAACTG+GGG | - | chr1_1:20627458-20627477 | Msa0013300:intron | 40.0% | |
| GAACTGAACACCTATATCTC+TGG | + | chr1_1:20627528-20627547 | None:intergenic | 40.0% | |
| GAAATTGCGCTATCCTAATG+AGG | - | chr1_1:20627583-20627602 | Msa0013300:intron | 40.0% | |
| TATATAAATAAGAGGGCCGC+AGG | + | chr1_1:20628082-20628101 | None:intergenic | 40.0% | |
| ! | TGCGGCCCTCTTATTTATAT+AGG | - | chr1_1:20628081-20628100 | Msa0013300:intron | 40.0% |
| ! | GCGGCCCTCTTATTTATATA+GGG | - | chr1_1:20628082-20628101 | Msa0013300:intron | 40.0% |
| ! | CGGCCCTCTTATTTATATAG+GGG | - | chr1_1:20628083-20628102 | Msa0013300:intron | 40.0% |
| ! | TTCTTTTCTGCAAAGCAGGA+AGG | + | chr1_1:20628216-20628235 | None:intergenic | 40.0% |
| ATTAAGCTTCAGATCTCCGA+TGG | - | chr1_1:20628258-20628277 | Msa0013300:intron | 40.0% | |
| TTAAGCTTCAGATCTCCGAT+GGG | - | chr1_1:20628259-20628278 | Msa0013300:intron | 40.0% | |
| ! | GAGGGTTCAACATTTTTGCA+TGG | + | chr1_1:20628503-20628522 | None:intergenic | 40.0% |
| CTGAATAGGGTTTGAGGAGA+AGG | - | chr1_1:20625054-20625073 | Msa0013300:CDS | 45.0% | |
| TTGTGAAAAGAAGGACGAGG+AGG | + | chr1_1:20625189-20625208 | None:intergenic | 45.0% | |
| AGCTTGTGAAAAGAAGGACG+AGG | + | chr1_1:20625192-20625211 | None:intergenic | 45.0% | |
| GGCAAAAACCATCTGCGATT+AGG | + | chr1_1:20626165-20626184 | None:intergenic | 45.0% | |
| ATTAACACACACGACCACAC+AGG | + | chr1_1:20626186-20626205 | None:intergenic | 45.0% | |
| TTGCAGATGTAGGAAGTTCG+AGG | + | chr1_1:20626269-20626288 | None:intergenic | 45.0% | |
| !!! | AGGATTTGGTGCTCCTTTTC+TGG | + | chr1_1:20626310-20626329 | None:intergenic | 45.0% |
| ATTCTCGGTCACACGTTCAA+AGG | + | chr1_1:20626636-20626655 | None:intergenic | 45.0% | |
| CGAGAATCCTCAAACTTCCT+TGG | - | chr1_1:20626649-20626668 | Msa0013300:intron | 45.0% | |
| GCAAAGACCAAGGAAGTTTG+AGG | + | chr1_1:20626659-20626678 | None:intergenic | 45.0% | |
| GGTTGCAATAGTCGAAAGCT+GGG | + | chr1_1:20627021-20627040 | None:intergenic | 45.0% | |
| ! | CTGGCGTCTAGGATTGAAAA+AGG | - | chr1_1:20627064-20627083 | Msa0013300:intron | 45.0% |
| !! | GAATTTGGTTTGTCGATGGC+TGG | - | chr1_1:20627096-20627115 | Msa0013300:intron | 45.0% |
| CAACGTTACTCCATTGGCAT+TGG | - | chr1_1:20627131-20627150 | Msa0013300:intron | 45.0% | |
| GGTTTGAAGGTGATGAATCC+AGG | + | chr1_1:20627331-20627350 | None:intergenic | 45.0% | |
| TCACCTTCAAACCTTACTCC+TGG | - | chr1_1:20627338-20627357 | Msa0013300:intron | 45.0% | |
| GATGGAGTATGATTCTTCGC+TGG | + | chr1_1:20627410-20627429 | None:intergenic | 45.0% | |
| CACGTTAACTGGGGAGATAT+CGG | - | chr1_1:20627467-20627486 | Msa0013300:intron | 45.0% | |
| GCGCAATTTCAATCCTTCAG+TGG | + | chr1_1:20627573-20627592 | None:intergenic | 45.0% | |
| TTGCGCTATCCTAATGAGGA+AGG | - | chr1_1:20627587-20627606 | Msa0013300:intron | 45.0% | |
| TGCGCTATCCTAATGAGGAA+GGG | - | chr1_1:20627588-20627607 | Msa0013300:intron | 45.0% | |
| AAGGTGACATGTCAGTGTAG+CGG | + | chr1_1:20627779-20627798 | None:intergenic | 45.0% | |
| CTTCCTGTGTCAGTGTTTCA+TGG | - | chr1_1:20627837-20627856 | Msa0013300:intron | 45.0% | |
| TAGCCATGAAACACTGACAC+AGG | + | chr1_1:20627843-20627862 | None:intergenic | 45.0% | |
| AGCCACTGCTGAAAATGATG+AGG | - | chr1_1:20627929-20627948 | Msa0013300:intron | 45.0% | |
| ! | CTCCTCATCATTTTCAGCAG+TGG | + | chr1_1:20627934-20627953 | None:intergenic | 45.0% |
| CACTGCTGAAAATGATGAGG+AGG | - | chr1_1:20627932-20627951 | Msa0013300:intron | 45.0% | |
| !! | ACTCGACAGAATGGATTGGT+TGG | + | chr1_1:20628056-20628075 | None:intergenic | 45.0% |
| GACAACTCGACAGAATGGAT+TGG | + | chr1_1:20628060-20628079 | None:intergenic | 45.0% | |
| CAAAGCAGGAAGGCAAATAC+TGG | + | chr1_1:20628206-20628225 | None:intergenic | 45.0% | |
| !! | CCTTTATAAAGGCACCGAAC+AGG | + | chr1_1:20628294-20628313 | None:intergenic | 45.0% |
| !! | CCTGTTCGGTGCCTTTATAA+AGG | - | chr1_1:20628291-20628310 | Msa0013300:CDS | 45.0% |
| !! | GTTCGGTGCCTTTATAAAGG+AGG | - | chr1_1:20628294-20628313 | Msa0013300:CDS | 45.0% |
| ATCCTTGGCTTAACTTTGCC+CGG | + | chr1_1:20628320-20628339 | None:intergenic | 45.0% | |
| AACTTGCAGTACTACCTCTC+TGG | + | chr1_1:20628409-20628428 | None:intergenic | 45.0% | |
| GTGTAAAAGAGGACGAGTCA+GGG | - | chr1_1:20628439-20628458 | Msa0013300:five_prime_UTR | 45.0% | |
| !! | TTTGGCTTGGCTGTGAAGAA+GGG | + | chr1_1:20628473-20628492 | None:intergenic | 45.0% |
| !!! | TTTTGGCTTGGCTGTGAAGA+AGG | + | chr1_1:20628474-20628493 | None:intergenic | 45.0% |
| !! | CTGATTTGGTTGAGCTGACA+CGG | + | chr1_1:20628536-20628555 | None:intergenic | 45.0% |
| !! | ATTATTACTATTAAATAAAT+TGG | + | chr1_1:20626721-20626740 | None:intergenic | 5.0% |
| ! | GCAGATGGTTTTTGCCTGTG+TGG | - | chr1_1:20626169-20626188 | Msa0013300:CDS | 50.0% |
| !! | GCTCCTTTTCTGGTGAGAAG+AGG | + | chr1_1:20626300-20626319 | None:intergenic | 50.0% |
| TGCTATTGCTGGTAGCCGTT+TGG | - | chr1_1:20626438-20626457 | Msa0013300:CDS | 50.0% | |
| ! | CTTCCTTGGTCTTTGCTCGT+TGG | - | chr1_1:20626663-20626682 | Msa0013300:intron | 50.0% |
| CTACCAACGAGCAAAGACCA+AGG | + | chr1_1:20626669-20626688 | None:intergenic | 50.0% | |
| !! | CTCGTTGGTAGTGCACCATT+GGG | - | chr1_1:20626678-20626697 | Msa0013300:intron | 50.0% |
| GGGTTGCAATAGTCGAAAGC+TGG | + | chr1_1:20627022-20627041 | None:intergenic | 50.0% | |
| AGTGCCATCAGGAACAGTGA+GGG | + | chr1_1:20627042-20627061 | None:intergenic | 50.0% | |
| CCATGAGAAGCCGTACTGAA+GGG | - | chr1_1:20627243-20627262 | Msa0013300:intron | 50.0% | |
| CATAGCAAGGCCCTTCAGTA+CGG | + | chr1_1:20627256-20627275 | None:intergenic | 50.0% | |
| GCACCAGGAGTAAGGTTTGA+AGG | + | chr1_1:20627344-20627363 | None:intergenic | 50.0% | |
| CTTGCAATGCACCAGGAGTA+AGG | + | chr1_1:20627352-20627371 | None:intergenic | 50.0% | |
| TCCTGGTGCATTGCAAGACA+AGG | - | chr1_1:20627355-20627374 | Msa0013300:intron | 50.0% | |
| ACCTTGTCTTGCAATGCACC+AGG | + | chr1_1:20627359-20627378 | None:intergenic | 50.0% | |
| CGATATCTCCCCAGTTAACG+TGG | + | chr1_1:20627469-20627488 | None:intergenic | 50.0% | |
| GTTAACTGGGGAGATATCGG+TGG | - | chr1_1:20627470-20627489 | Msa0013300:intron | 50.0% | |
| GCGCTATCCTAATGAGGAAG+GGG | - | chr1_1:20627589-20627608 | Msa0013300:intron | 50.0% | |
| CGACACAGAGATGACAACAC+CGG | + | chr1_1:20627814-20627833 | None:intergenic | 50.0% | |
| CTGTGTAACTGTAGGTGCAC+AGG | - | chr1_1:20627905-20627924 | Msa0013300:intron | 50.0% | |
| ! | CATTCTGTCGAGTTGTCCTG+CGG | - | chr1_1:20628063-20628082 | Msa0013300:intron | 50.0% |
| GGTGCCTTTATAAAGGAGGC+CGG | - | chr1_1:20628298-20628317 | Msa0013300:CDS | 50.0% | |
| GTGCCTTTATAAAGGAGGCC+GGG | - | chr1_1:20628299-20628318 | Msa0013300:CDS | 50.0% | |
| TTGCCCGGCCTCCTTTATAA+AGG | + | chr1_1:20628305-20628324 | None:intergenic | 50.0% | |
| GGGCAAAGTTAAGCCAAGGA+TGG | - | chr1_1:20628319-20628338 | Msa0013300:exon | 50.0% | |
| CGTGTAAAAGAGGACGAGTC+AGG | - | chr1_1:20628438-20628457 | Msa0013300:five_prime_UTR | 50.0% | |
| !!! | GCATGGCTCACATTTTGGCT+TGG | + | chr1_1:20628486-20628505 | None:intergenic | 50.0% |
| TTCAGGCCGAGTATACGACC+CGG | - | chr1_1:20626206-20626225 | Msa0013300:CDS | 55.0% | |
| !! | GCTCGTTGGTAGTGCACCAT+TGG | - | chr1_1:20626677-20626696 | Msa0013300:intron | 55.0% |
| GCACCATTGGGCCCATACTT+AGG | - | chr1_1:20626690-20626709 | Msa0013300:intron | 55.0% | |
| CGACCTAAGTATGGGCCCAA+TGG | + | chr1_1:20626696-20626715 | None:intergenic | 55.0% | |
| GCAACCCTCACTGTTCCTGA+TGG | - | chr1_1:20627035-20627054 | Msa0013300:intron | 55.0% | |
| CAGTGCCATCAGGAACAGTG+AGG | + | chr1_1:20627043-20627062 | None:intergenic | 55.0% | |
| CTGTTCCTGATGGCACTGTC+TGG | - | chr1_1:20627045-20627064 | Msa0013300:intron | 55.0% | |
| GCCATGAGAAGCCGTACTGA+AGG | - | chr1_1:20627242-20627261 | Msa0013300:intron | 55.0% | |
| CCCTTCAGTACGGCTTCTCA+TGG | + | chr1_1:20627246-20627265 | None:intergenic | 55.0% | |
| GTGACATGTCAGTGTAGCGG+CGG | + | chr1_1:20627776-20627795 | None:intergenic | 55.0% | |
| CGCAGGACAACTCGACAGAA+TGG | + | chr1_1:20628065-20628084 | None:intergenic | 55.0% | |
| AGATCTCCGATGGGAGACAG+TGG | - | chr1_1:20628268-20628287 | Msa0013300:intron | 55.0% | |
| AACAGGCCACTGTCTCCCAT+CGG | + | chr1_1:20628277-20628296 | None:intergenic | 55.0% | |
| ATGGGAGACAGTGGCCTGTT+CGG | - | chr1_1:20628277-20628296 | Msa0013300:CDS | 55.0% | |
| CGAGCTGCTTAGAACCAGAG+AGG | - | chr1_1:20628392-20628411 | Msa0013300:five_prime_UTR | 55.0% | |
| !! | TGACACGGTGCTGCAAGTGA+GGG | + | chr1_1:20628521-20628540 | None:intergenic | 55.0% |
| AGACGCCAGACAGTGCCATC+AGG | + | chr1_1:20627053-20627072 | None:intergenic | 60.0% | |
| GATGGCACTGTCTGGCGTCT+AGG | - | chr1_1:20627053-20627072 | Msa0013300:intron | 60.0% | |
| TGTCAGTGTAGCGGCGGAGT+TGG | + | chr1_1:20627770-20627789 | None:intergenic | 60.0% | |
| GGCCGGGCAAAGTTAAGCCA+AGG | - | chr1_1:20628315-20628334 | Msa0013300:exon | 60.0% | |
| !! | CTGACACGGTGCTGCAAGTG+AGG | + | chr1_1:20628522-20628541 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20624950 | 20628566 | 20624950 | ID=Msa0013300;Name=Msa0013300 |
| chr1_1 | mRNA | 20624950 | 20628566 | 20624950 | ID=Msa0013300-mRNA-1;Parent=Msa0013300;Name=Msa0013300-mRNA-1;_AED=0.15;_eAED=0.15;_QI=233|0.66|0.5|1|1|1|4|0|436 |
| chr1_1 | exon | 20624950 | 20625360 | 20624950 | ID=Msa0013300-mRNA-1:exon:7343;Parent=Msa0013300-mRNA-1 |
| chr1_1 | exon | 20625443 | 20625597 | 20625443 | ID=Msa0013300-mRNA-1:exon:7342;Parent=Msa0013300-mRNA-1 |
| chr1_1 | exon | 20625851 | 20626532 | 20625851 | ID=Msa0013300-mRNA-1:exon:7341;Parent=Msa0013300-mRNA-1 |
| chr1_1 | exon | 20628271 | 20628566 | 20628271 | ID=Msa0013300-mRNA-1:exon:7340;Parent=Msa0013300-mRNA-1 |
| chr1_1 | five_prime_UTR | 20628334 | 20628566 | 20628334 | ID=Msa0013300-mRNA-1:five_prime_utr;Parent=Msa0013300-mRNA-1 |
| chr1_1 | CDS | 20628271 | 20628333 | 20628271 | ID=Msa0013300-mRNA-1:cds;Parent=Msa0013300-mRNA-1 |
| chr1_1 | CDS | 20625851 | 20626532 | 20625851 | ID=Msa0013300-mRNA-1:cds;Parent=Msa0013300-mRNA-1 |
| chr1_1 | CDS | 20625443 | 20625597 | 20625443 | ID=Msa0013300-mRNA-1:cds;Parent=Msa0013300-mRNA-1 |
| chr1_1 | CDS | 20624950 | 20625360 | 20624950 | ID=Msa0013300-mRNA-1:cds;Parent=Msa0013300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
