AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539400 MtrunA17_Chr4g0014341 95.210 334 13 2 1 334 1 331 0.0 630
Msa0539400 MtrunA17_Chr4g0065691 32.301 226 137 4 121 334 20 241 1.10e-23 98.6
Msa0539400 MtrunA17_Chr2g0287701 34.703 219 126 5 127 333 26 239 3.45e-20 88.6
Msa0539400 MtrunA17_Chr2g0291431 33.333 135 84 3 152 282 106 238 1.12e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539400 AT1G22850.1 72.667 300 69 3 30 324 36 327 2.99e-135 388
Msa0539400 AT1G22850.2 71.852 270 63 3 30 294 36 297 3.43e-127 366
Msa0539400 AT1G03260.1 31.308 214 142 2 121 333 22 231 4.52e-24 99.8
Msa0539400 AT5G19070.1 34.951 206 130 4 127 330 26 229 1.28e-19 87.8
Msa0539400 AT5G19070.2 39.873 158 92 3 127 282 26 182 3.10e-17 80.1
Msa0539400 AT2G02370.2 24.576 236 161 8 107 334 61 287 6.62e-13 68.9
Msa0539400 AT2G02370.1 24.576 236 161 8 107 334 61 287 6.62e-13 68.9
Msa0539400 AT2G02370.3 24.576 236 161 8 107 334 61 287 6.62e-13 68.9
Msa0539400 AT4G22850.1 28.767 219 144 5 123 332 72 287 9.26e-13 68.2

Find 123 sgRNAs with CRISPR-Local

Find 584 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACACTGTTTCAATTTA+AGG 0.096298 4_1:-20306208 None:intergenic
CATCTCCATCCAAAACTTTA+AGG 0.164212 4_1:-20306304 None:intergenic
GGTTACATTTGTTCCAATTT+AGG 0.166553 4_1:-20306624 None:intergenic
GACAAAGCAATTGGAGAAAA+TGG 0.205274 4_1:+20301376 Msa0539400:CDS
TCACTGGGGAATTATTTATA+TGG 0.208143 4_1:+20301445 Msa0539400:CDS
GGATAATCGATTATTATTAT+TGG 0.208942 4_1:-20298461 None:intergenic
GTATGTTTATATGCCTAAAT+TGG 0.210185 4_1:+20306611 Msa0539400:three_prime_UTR
TTGCCAATACCTTAAAGTTT+TGG 0.269774 4_1:+20306295 Msa0539400:three_prime_UTR
GACGCTTGGGCTTGGACTCT+TGG 0.281093 4_1:+20305096 Msa0539400:CDS
AAATAATTCCCCAGTGAAAA+TGG 0.282633 4_1:-20301439 None:intergenic
CAGTTGCCTCTAGTCTCTAC+TGG 0.291782 4_1:-20305998 None:intergenic
CTTATTGATGAGAATCTTGC+AGG 0.295902 4_1:+20306159 Msa0539400:three_prime_UTR
CTTCTCTTTGGATCCCTTAC+CGG 0.308993 4_1:+20300568 Msa0539400:CDS
TATGTTAGTGCTGGTGCTTT+TGG 0.309524 4_1:+20302057 Msa0539400:CDS
CATCCAAAACTTTAAGGTAT+TGG 0.315273 4_1:-20306298 None:intergenic
CCAACACTGTTTCAATTTAA+GGG 0.324582 4_1:-20306207 None:intergenic
CAATGGGAATCAATAAATCT+AGG 0.327035 4_1:+20306464 Msa0539400:three_prime_UTR
ATGTCAGCCGGACTTCTCTT+TGG 0.339049 4_1:+20300556 Msa0539400:CDS
TGATTCAAGAAAGTATTAAT+AGG 0.339145 4_1:-20298790 None:intergenic
TAAGTTTCTTCCATATGTAT+TGG 0.356086 4_1:+20301480 Msa0539400:CDS
CAGCTGCTGACGCTTGGGCT+TGG 0.363721 4_1:+20305088 Msa0539400:CDS
AAGTTTCTTCCATATGTATT+GGG 0.371082 4_1:+20301481 Msa0539400:CDS
CTTGCTATTGACAAAGCAAT+TGG 0.371123 4_1:+20301367 Msa0539400:CDS
CTAACATAAGCCCATGTTCC+TGG 0.376453 4_1:-20302042 None:intergenic
CACTGGGGAATTATTTATAT+GGG 0.376839 4_1:+20301446 Msa0539400:CDS
GTAAAGTTTATAATTAATCT+TGG 0.377883 4_1:-20306645 None:intergenic
TAATTGTCATGCAGTTGGTT+GGG 0.378900 4_1:+20302012 Msa0539400:intron
GGCAGGTCTATGATCGGATT+GGG 0.382799 4_1:+20306040 Msa0539400:three_prime_UTR
AGTTGGTTGGGGATGCTTCC+AGG 0.390286 4_1:+20302024 Msa0539400:intron
CAATTCTCTGGCTTCATTGA+AGG 0.393685 4_1:+20298811 Msa0539400:CDS
AACAATCAGCTGCTGACGCT+TGG 0.399885 4_1:+20305082 Msa0539400:CDS
TGGGGATGCTTCCAGGAACA+TGG 0.413941 4_1:+20302031 Msa0539400:CDS
CGAGCGTATTCTAAAATTAG+TGG 0.413996 4_1:+20301327 Msa0539400:CDS
AGCTCAAAGTTATATAATCT+TGG 0.418021 4_1:-20306667 None:intergenic
GGATGAAGGTGCTGCTTTGA+AGG 0.427026 4_1:+20298693 Msa0539400:CDS
AAGAAAGAAGGTGGAATGAA+TGG 0.434244 4_1:-20298338 None:intergenic
ACTTTCTTGAATCAATTCTC+TGG 0.437926 4_1:+20298799 Msa0539400:CDS
TTGATTCCCATTGTTGTCGA+TGG 0.440006 4_1:-20306454 None:intergenic
ACAATCAGCTGCTGACGCTT+GGG 0.440714 4_1:+20305083 Msa0539400:CDS
AAGTCCGGCTGACATGGTTA+AGG 0.440738 4_1:-20300548 None:intergenic
CCATACCTTCCCAATACATA+TGG 0.444075 4_1:-20301490 None:intergenic
AACTAGTGCAAATGGAATCT+AGG 0.446140 4_1:-20306364 None:intergenic
ATCTGAGAAAGAAGAGGAAG+AGG 0.449000 4_1:+20298672 Msa0539400:CDS
TGTTAAAGAACTAGTGCAAA+TGG 0.451818 4_1:-20306372 None:intergenic
CCCTTAAATTGAAACAGTGT+TGG 0.454234 4_1:+20306207 Msa0539400:three_prime_UTR
AAGAATAAGAAGAAGAAAAG+AGG 0.456198 4_1:+20298646 Msa0539400:CDS
TTGTTTGTAGCTGTTTATGC+TGG 0.458819 4_1:+20300310 Msa0539400:CDS
AACAAACGCTTTAACCGAGA+TGG 0.466588 4_1:-20298580 None:intergenic
GCAAAGGGCTCAAACGAAGC+AGG 0.470966 4_1:-20301414 None:intergenic
AATTGGAGAAAATGGCTTCA+AGG 0.475664 4_1:+20301384 Msa0539400:CDS
AGACTATGATAGTGCCGGTA+AGG 0.477903 4_1:-20300582 None:intergenic
TGTAGCTGTTTATGCTGGAT+TGG 0.479159 4_1:+20300315 Msa0539400:CDS
TGAACAGGTTATGGTTCAGC+TGG 0.479323 4_1:+20300280 Msa0539400:intron
ACTTACCCATCGACAACAAT+GGG 0.480150 4_1:+20306448 Msa0539400:three_prime_UTR
CCCAGTGAAAATGGCAGCAA+AGG 0.481761 4_1:-20301430 None:intergenic
GATGTGGTGTCTTAATCTCT+TGG 0.481882 4_1:+20306323 Msa0539400:three_prime_UTR
TGAGAGAGAATCAAGGAAAG+TGG 0.483444 4_1:+20306102 Msa0539400:three_prime_UTR
GAATCTGAACTTAGTTCACT+TGG 0.487591 4_1:+20305055 Msa0539400:CDS
TGACACACATTTGCGAATGA+AGG 0.489429 4_1:+20306019 Msa0539400:three_prime_UTR
AGTCCGGCTGACATGGTTAA+GGG 0.496487 4_1:-20300547 None:intergenic
TGCTTTGAAGGGTACCCTAC+TGG 0.498540 4_1:+20298705 Msa0539400:CDS
TAAGAATATTGTAATTTACA+AGG 0.505788 4_1:-20306140 None:intergenic
ATAATTGTCATGCAGTTGGT+TGG 0.507926 4_1:+20302011 Msa0539400:intron
AGGCAGGTCTATGATCGGAT+TGG 0.509003 4_1:+20306039 Msa0539400:three_prime_UTR
TGATTCCCATTGTTGTCGAT+GGG 0.511817 4_1:-20306453 None:intergenic
AGCTGTTTATGCTGGATTGG+AGG 0.512844 4_1:+20300318 Msa0539400:CDS
GACATGGTTAAGGGAATGGC+AGG 0.519492 4_1:-20300538 None:intergenic
TCAGTGTTATTGATTCTACT+AGG 0.521966 4_1:-20298556 None:intergenic
GGGGATGCTTCCAGGAACAT+GGG 0.521976 4_1:+20302032 Msa0539400:CDS
AAAGAAGAGGAAGAGGATGA+AGG 0.526036 4_1:+20298679 Msa0539400:CDS
TAATTTACAAGGGGAATGCT+AGG 0.529214 4_1:-20306129 None:intergenic
CGTATTCTAAAATTAGTGGA+AGG 0.529552 4_1:+20301331 Msa0539400:CDS
AATTGTCATGCAGTTGGTTG+GGG 0.530827 4_1:+20302013 Msa0539400:intron
TTCTTCCATATGTATTGGGA+AGG 0.534079 4_1:+20301485 Msa0539400:CDS
TGCGAGTGGTGGTTAGAAGT+TGG 0.534571 4_1:+20306238 Msa0539400:three_prime_UTR
CCAGTGAAAATGGCAGCAAA+GGG 0.534749 4_1:-20301429 None:intergenic
ATTTAAGGGAGCAACACAAA+AGG 0.535042 4_1:-20306193 None:intergenic
AGAATCAGTTACAAGAAAGA+AGG 0.536879 4_1:-20298350 None:intergenic
AATGGGAATCAATAAATCTA+GGG 0.538341 4_1:+20306465 Msa0539400:three_prime_UTR
GGCTGACATGGTTAAGGGAA+TGG 0.542883 4_1:-20300542 None:intergenic
AGTTGCCTCTAGTCTCTACT+GGG 0.543227 4_1:-20305997 None:intergenic
GACTATGATAGTGCCGGTAA+GGG 0.543748 4_1:-20300581 None:intergenic
TGATAGATGAGAGAGAATCA+AGG 0.545672 4_1:+20306095 Msa0539400:three_prime_UTR
TACTTACCCATCGACAACAA+TGG 0.546612 4_1:+20306447 Msa0539400:three_prime_UTR
AAGAATATTGTAATTTACAA+GGG 0.546641 4_1:-20306139 None:intergenic
TCTGAACTTAGTTCACTTGG+AGG 0.551989 4_1:+20305058 Msa0539400:CDS
AAGGGATCCAAAGAGAAGTC+CGG 0.555574 4_1:-20300563 None:intergenic
AAAGAGAAGTCCGGCTGACA+TGG 0.557015 4_1:-20300554 None:intergenic
AAGCAAAACACCAGCCAGTA+GGG 0.564088 4_1:-20298719 None:intergenic
GATGAAGGTGCTGCTTTGAA+GGG 0.566343 4_1:+20298694 Msa0539400:CDS
TTATTATTATTGGTGTGAAG+AGG 0.567551 4_1:-20298451 None:intergenic
ACAAACGCTTTAACCGAGAT+GGG 0.569808 4_1:-20298579 None:intergenic
TCAATAACACTGACCCATCT+CGG 0.572891 4_1:+20298566 Msa0539400:CDS
AGGTGAATCTGAGAAAGAAG+AGG 0.574145 4_1:+20298666 Msa0539400:CDS
ATCAGTTACAAGAAAGAAGG+TGG 0.579942 4_1:-20298347 None:intergenic
ACATGGGCTTATGTTAGTGC+TGG 0.583860 4_1:+20302048 Msa0539400:CDS
CAAGCAAAACACCAGCCAGT+AGG 0.584034 4_1:-20298720 None:intergenic
AGAATATTGTAATTTACAAG+GGG 0.585844 4_1:-20306138 None:intergenic
GAAGATGATAGACATGGTGG+TGG 0.585967 4_1:-20298421 None:intergenic
GATAGAGACTATGATAGTGC+CGG 0.590119 4_1:-20300587 None:intergenic
ACACATTTGCGAATGAAGGC+AGG 0.592011 4_1:+20306023 Msa0539400:three_prime_UTR
TTGAAGGGTACCCTACTGGC+TGG 0.599418 4_1:+20298709 Msa0539400:CDS
GTGGTGTCTTAATCTCTTGG+TGG 0.601445 4_1:+20306326 Msa0539400:three_prime_UTR
ATTCCCTTAACCATGTCAGC+CGG 0.606649 4_1:+20300544 Msa0539400:CDS
TAGTTCTTTAACATGGTCAG+AGG 0.615298 4_1:+20306382 Msa0539400:three_prime_UTR
GTTTGTTTGAGAGATGAATG+TGG 0.616294 4_1:-20298523 None:intergenic
AGGGAATGGCAGGAATTGCA+AGG 0.618635 4_1:-20300528 None:intergenic
CAAAGGGCTCAAACGAAGCA+GGG 0.626668 4_1:-20301413 None:intergenic
TTTGCACTAGTTCTTTAACA+TGG 0.627899 4_1:+20306375 Msa0539400:three_prime_UTR
TGTCGATGGGTAAGTACAAG+AGG 0.629312 4_1:-20306440 None:intergenic
AATGAAGGCAGGTCTATGAT+CGG 0.629372 4_1:+20306034 Msa0539400:three_prime_UTR
AGTTCTTTAACATGGTCAGA+GGG 0.629717 4_1:+20306383 Msa0539400:three_prime_UTR
ATATGTCACGAAGCTTGCAA+AGG 0.645708 4_1:+20305138 Msa0539400:CDS
GTATTCTAAAATTAGTGGAA+GGG 0.647848 4_1:+20301332 Msa0539400:CDS
GCAGGTCTATGATCGGATTG+GGG 0.650277 4_1:+20306041 Msa0539400:three_prime_UTR
ACTATCATAGTCTCTATCAG+TGG 0.670984 4_1:+20300592 Msa0539400:CDS
AATCTAGGAACTAATAACAA+CGG 0.675492 4_1:-20306349 None:intergenic
CTAGACCCAGTAGAGACTAG+AGG 0.675993 4_1:+20305992 Msa0539400:exon
ATATGTAGCAGCTAATGCAG+TGG 0.688625 4_1:-20305119 None:intergenic
TATGAAGAAGATGATAGACA+TGG 0.704292 4_1:-20298427 None:intergenic
GAAGAAGATGATAGACATGG+TGG 0.711512 4_1:-20298424 None:intergenic
TGTTGGAACTCAAGTGCGAG+TGG 0.712136 4_1:+20306224 Msa0539400:three_prime_UTR
TGGAACTCAAGTGCGAGTGG+TGG 0.716561 4_1:+20306227 Msa0539400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAATCTAATATTTTA+AGG + chr4_1:20301252-20301271 Msa0539400:intron 10.0%
!! CTTTGTAATAAAAAAAAAAA+AGG - chr4_1:20301766-20301785 None:intergenic 10.0%
!!! AATTCTTTATTTTAAAATTG+GGG - chr4_1:20304799-20304818 None:intergenic 10.0%
!! TATTTGTAATATTCAATAAT+AGG + chr4_1:20305202-20305221 Msa0539400:intron 10.0%
!! TCATTTAAAAGTTTATGTAT+GGG - chr4_1:20300198-20300217 None:intergenic 15.0%
!! ATCATTTAAAAGTTTATGTA+TGG - chr4_1:20300199-20300218 None:intergenic 15.0%
!!! TATTTAAGACATCTAAAATT+TGG + chr4_1:20300830-20300849 Msa0539400:intron 15.0%
!! AAAAAATAAATATATTTCCC+AGG + chr4_1:20301663-20301682 Msa0539400:intron 15.0%
!! TTTAATGTTGTATAATGTAT+TGG + chr4_1:20302667-20302686 Msa0539400:intron 15.0%
!! TAAATACATGTTCTTTAATT+AGG - chr4_1:20305184-20305203 None:intergenic 15.0%
!! AAGAATATTGTAATTTACAA+GGG - chr4_1:20306142-20306161 None:intergenic 15.0%
!! TAAGAATATTGTAATTTACA+AGG - chr4_1:20306143-20306162 None:intergenic 15.0%
!! GTAAAGTTTATAATTAATCT+TGG - chr4_1:20306648-20306667 None:intergenic 15.0%
!! GGATAATCGATTATTATTAT+TGG - chr4_1:20298464-20298483 None:intergenic 20.0%
!!! TGATTCAAGAAAGTATTAAT+AGG - chr4_1:20298793-20298812 None:intergenic 20.0%
!!! TTTTCAGCTTATACTTAATA+TGG + chr4_1:20298863-20298882 Msa0539400:intron 20.0%
!! TTAATTAAGCGCTTTAATAT+AGG - chr4_1:20299582-20299601 None:intergenic 20.0%
!! TGATAAGAGTTTAAATTAAG+TGG + chr4_1:20300215-20300234 Msa0539400:intron 20.0%
!! GATAAGAGTTTAAATTAAGT+GGG + chr4_1:20300216-20300235 Msa0539400:intron 20.0%
!!! TATATGAATTTTGCATATTC+TGG - chr4_1:20300685-20300704 None:intergenic 20.0%
!!! AATCAAAGTGAAGATATTTT+GGG - chr4_1:20301800-20301819 None:intergenic 20.0%
!!! TAATCAAAGTGAAGATATTT+TGG - chr4_1:20301801-20301820 None:intergenic 20.0%
!! AATGCAATTAAGAATGAAAT+TGG + chr4_1:20301887-20301906 Msa0539400:intron 20.0%
!! ATGCAATTAAGAATGAAATT+GGG + chr4_1:20301888-20301907 Msa0539400:intron 20.0%
!!! AATTTATTTTTAACTCCGAT+TGG + chr4_1:20301951-20301970 Msa0539400:intron 20.0%
!! AATTGCAGTAATATTTACAA+AGG - chr4_1:20302302-20302321 None:intergenic 20.0%
!! GAAAAAAGTTATTGTAATGT+GGG + chr4_1:20302542-20302561 Msa0539400:intron 20.0%
!! AAAAAAGTTATTGTAATGTG+GGG + chr4_1:20302543-20302562 Msa0539400:intron 20.0%
!! ATTGAAATTGTGTTTATAAG+CGG + chr4_1:20302739-20302758 Msa0539400:intron 20.0%
!! ATGATAAATGAGTTAGAATA+GGG + chr4_1:20303280-20303299 Msa0539400:intron 20.0%
!!! ATGCATTAGTTTTTAGTAAT+TGG + chr4_1:20303407-20303426 Msa0539400:intron 20.0%
!! AATAAAACATTCTAAACCTT+GGG - chr4_1:20304405-20304424 None:intergenic 20.0%
!! TGAATCCATAATTAGAAATA+GGG - chr4_1:20304988-20305007 None:intergenic 20.0%
!! ATGAATCCATAATTAGAAAT+AGG - chr4_1:20304989-20305008 None:intergenic 20.0%
!! ATTTCTAATTATGGATTCAT+TGG + chr4_1:20304989-20305008 Msa0539400:intron 20.0%
!! AAAGATGAAAATAATTTCAG+AGG + chr4_1:20305276-20305295 Msa0539400:intron 20.0%
!! AAGAAATGAGGAAAAATTAA+GGG - chr4_1:20305483-20305502 None:intergenic 20.0%
!! AGAATATTGTAATTTACAAG+GGG - chr4_1:20306141-20306160 None:intergenic 20.0%
! TTATTATTATTGGTGTGAAG+AGG - chr4_1:20298454-20298473 None:intergenic 25.0%
! TTTGTAAGAAGAAAAAGTAG+TGG - chr4_1:20298485-20298504 None:intergenic 25.0%
!!! TCATCATCATTTTCACTTTT+GGG - chr4_1:20298610-20298629 None:intergenic 25.0%
!! ATCATCATCATTTTCACTTT+TGG - chr4_1:20298611-20298630 None:intergenic 25.0%
! AAGAATAAGAAGAAGAAAAG+AGG + chr4_1:20298646-20298665 Msa0539400:CDS 25.0%
! CAACTTAATTAAGCAGTTAT+AGG + chr4_1:20299173-20299192 Msa0539400:intron 25.0%
! TTTATTTCCATAAGCTATCA+TGG + chr4_1:20299263-20299282 Msa0539400:intron 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG + chr4_1:20299382-20299401 Msa0539400:intron 25.0%
!! TAACCTTTCTTCACTATTTT+GGG - chr4_1:20299792-20299811 None:intergenic 25.0%
! ATTGAAACATTACGAATCAA+GGG - chr4_1:20300476-20300495 None:intergenic 25.0%
! GTAATGTTTCAATCTAACTT+TGG + chr4_1:20300483-20300502 Msa0539400:intron 25.0%
! GAACTATAAGAAAGATTTGA+AGG - chr4_1:20300658-20300677 None:intergenic 25.0%
! TAGATGTCTTAAATATTGAC+AGG - chr4_1:20300825-20300844 None:intergenic 25.0%
! ACTACTTATAAGTGATTAGT+TGG + chr4_1:20300869-20300888 Msa0539400:intron 25.0%
! AAACATTTGTGAAACTGTTT+GGG - chr4_1:20301128-20301147 None:intergenic 25.0%
! TAAACATTTGTGAAACTGTT+TGG - chr4_1:20301129-20301148 None:intergenic 25.0%
! CACATTTAGTATCTATTAAC+TGG - chr4_1:20301226-20301245 None:intergenic 25.0%
!!! CTAATATTTTAAGGCTTTGT+AGG + chr4_1:20301261-20301280 Msa0539400:intron 25.0%
!!! GTATTCTAAAATTAGTGGAA+GGG + chr4_1:20301332-20301351 Msa0539400:CDS 25.0%
! TAAGTTTCTTCCATATGTAT+TGG + chr4_1:20301480-20301499 Msa0539400:CDS 25.0%
! AAGTTTCTTCCATATGTATT+GGG + chr4_1:20301481-20301500 Msa0539400:CDS 25.0%
!! TTTTTACCAAATACATGAGT+AGG - chr4_1:20301645-20301664 None:intergenic 25.0%
!!! CAAATTTTGAAAACATTCCT+GGG - chr4_1:20301683-20301702 None:intergenic 25.0%
!!! TTTTCAAAATTTGGTAATCG+AGG + chr4_1:20301690-20301709 Msa0539400:intron 25.0%
! TTCACTTTGATTAATCATAG+AGG + chr4_1:20301808-20301827 Msa0539400:intron 25.0%
! GGAAAAAAGTTATTGTAATG+TGG + chr4_1:20302541-20302560 Msa0539400:intron 25.0%
! AAAAAGTTATTGTAATGTGG+GGG + chr4_1:20302544-20302563 Msa0539400:intron 25.0%
!! ATTAGTTTCTATCAAACACA+TGG + chr4_1:20302604-20302623 Msa0539400:intron 25.0%
! TTGTATAATGTATTGGATGA+CGG + chr4_1:20302674-20302693 Msa0539400:intron 25.0%
! ACCATCGTAAAATTTGAATT+GGG - chr4_1:20302810-20302829 None:intergenic 25.0%
! TACCATCGTAAAATTTGAAT+TGG - chr4_1:20302811-20302830 None:intergenic 25.0%
!! AGCTGAAAATGTTTTATAAG+TGG + chr4_1:20302939-20302958 Msa0539400:intron 25.0%
!! TGAAAATGTTTTATAAGTGG+TGG + chr4_1:20302942-20302961 Msa0539400:intron 25.0%
!! GAAAATGTTTTATAAGTGGT+GGG + chr4_1:20302943-20302962 Msa0539400:intron 25.0%
!!! ATAGTAGATTGATTAGTTTG+TGG + chr4_1:20303027-20303046 Msa0539400:intron 25.0%
! TAATTTGACCAAGAAATGTT+TGG + chr4_1:20303171-20303190 Msa0539400:intron 25.0%
! CATGATAAATGAGTTAGAAT+AGG + chr4_1:20303279-20303298 Msa0539400:intron 25.0%
!! AATTTCAATGTTTGAGATTG+AGG + chr4_1:20303793-20303812 Msa0539400:intron 25.0%
!!! ATTGAGGTTTTCTAAAATTG+TGG + chr4_1:20303809-20303828 Msa0539400:intron 25.0%
! TACAAAAAAGCTTGATCAAA+TGG + chr4_1:20304221-20304240 Msa0539400:intron 25.0%
! CAATAAAACATTCTAAACCT+TGG - chr4_1:20304406-20304425 None:intergenic 25.0%
! TAAAACGAAATTCTTTGATG+AGG + chr4_1:20304568-20304587 Msa0539400:intron 25.0%
! AAAACGAAATTCTTTGATGA+GGG + chr4_1:20304569-20304588 Msa0539400:intron 25.0%
!!! CTTTATTTTAAAATTGGGGA+AGG - chr4_1:20304795-20304814 None:intergenic 25.0%
! TTAATTAGGATATGGAAAAC+AGG - chr4_1:20305170-20305189 None:intergenic 25.0%
! CATGTTCTTTAATTAGGATA+TGG - chr4_1:20305178-20305197 None:intergenic 25.0%
! ACATTATCTAAACAACGAAT+TGG - chr4_1:20305309-20305328 None:intergenic 25.0%
! TAGATAATGTTTCTTTGTCT+TGG + chr4_1:20305319-20305338 Msa0539400:intron 25.0%
!!! AGAACATTGATTCATAGAAT+TGG + chr4_1:20305365-20305384 Msa0539400:intron 25.0%
! GAAGAAATGAGGAAAAATTA+AGG - chr4_1:20305484-20305503 None:intergenic 25.0%
! ACTAAGATTAATTCTAGACA+TGG - chr4_1:20305910-20305929 None:intergenic 25.0%
! AATCTAGGAACTAATAACAA+CGG - chr4_1:20306352-20306371 None:intergenic 25.0%
! AATGGGAATCAATAAATCTA+GGG + chr4_1:20306465-20306484 Msa0539400:three_prime_UTR 25.0%
! GTATGTTTATATGCCTAAAT+TGG + chr4_1:20306611-20306630 Msa0539400:three_prime_UTR 25.0%
AGAATCAGTTACAAGAAAGA+AGG - chr4_1:20298353-20298372 None:intergenic 30.0%
TATGAAGAAGATGATAGACA+TGG - chr4_1:20298430-20298449 None:intergenic 30.0%
!!! GATTCTACTAGGTTGTTTTT+TGG - chr4_1:20298548-20298567 None:intergenic 30.0%
!! TCAGTGTTATTGATTCTACT+AGG - chr4_1:20298559-20298578 None:intergenic 30.0%
ACTTTCTTGAATCAATTCTC+TGG + chr4_1:20298799-20298818 Msa0539400:CDS 30.0%
TGTAAGCTGAAAACAGTTTA+TGG - chr4_1:20299463-20299482 None:intergenic 30.0%
CAACTTCGATATATACTATG+AGG + chr4_1:20299481-20299500 Msa0539400:intron 30.0%
GGCTTATTAACAACTTATCT+AGG - chr4_1:20299645-20299664 None:intergenic 30.0%
!! GGTTTTAGTGAGAATCTTAA+TGG + chr4_1:20299743-20299762 Msa0539400:intron 30.0%
! CTAACCTTTCTTCACTATTT+TGG - chr4_1:20299793-20299812 None:intergenic 30.0%
CATAAGCTCTTATATATAGC+TGG + chr4_1:20299937-20299956 Msa0539400:intron 30.0%
! TTATTTGGTGAAACTCATGT+AGG + chr4_1:20300055-20300074 Msa0539400:intron 30.0%
! AAAAGTTTATGTATGGGTTG+AGG - chr4_1:20300192-20300211 None:intergenic 30.0%
! TATCTGTTCTTTTGATGAAC+AGG + chr4_1:20300265-20300284 Msa0539400:intron 30.0%
! TTCTTTTGATGAACAGGTTA+TGG + chr4_1:20300271-20300290 Msa0539400:intron 30.0%
GATTGAAACATTACGAATCA+AGG - chr4_1:20300477-20300496 None:intergenic 30.0%
TTGGACTATTTAACGTCATA+TGG + chr4_1:20300888-20300907 Msa0539400:intron 30.0%
TCAATCCAAACAGACTTAAA+TGG + chr4_1:20301175-20301194 Msa0539400:intron 30.0%
TCATTCCATTTAAGTCTGTT+TGG - chr4_1:20301183-20301202 None:intergenic 30.0%
!!! ATATTTTAAGGCTTTGTAGG+TGG + chr4_1:20301264-20301283 Msa0539400:intron 30.0%
!! CGTATTCTAAAATTAGTGGA+AGG + chr4_1:20301331-20301350 Msa0539400:CDS 30.0%
AAATAATTCCCCAGTGAAAA+TGG - chr4_1:20301442-20301461 None:intergenic 30.0%
TCACTGGGGAATTATTTATA+TGG + chr4_1:20301445-20301464 Msa0539400:CDS 30.0%
CACTGGGGAATTATTTATAT+GGG + chr4_1:20301446-20301465 Msa0539400:CDS 30.0%
AAGCTTGAAATTACATTGCT+TGG + chr4_1:20301580-20301599 Msa0539400:intron 30.0%
AACATTCCTACTCATGTATT+TGG + chr4_1:20301636-20301655 Msa0539400:intron 30.0%
!! CCAAATTTTGAAAACATTCC+TGG - chr4_1:20301684-20301703 None:intergenic 30.0%
! CCAGGAATGTTTTCAAAATT+TGG + chr4_1:20301681-20301700 Msa0539400:intron 30.0%
! AAGAAATGTGCTTTTCCAAT+CGG - chr4_1:20301969-20301988 None:intergenic 30.0%
ACATATAATTGTCATGCAGT+TGG + chr4_1:20302007-20302026 Msa0539400:intron 30.0%
AAGCATGCAAAAAATATCAG+AGG - chr4_1:20302116-20302135 None:intergenic 30.0%
! TTTTTGCATGCTTGATGTTT+TGG + chr4_1:20302123-20302142 Msa0539400:intron 30.0%
GAATATATGAAGCTAATCGA+GGG - chr4_1:20302177-20302196 None:intergenic 30.0%
AGAATATATGAAGCTAATCG+AGG - chr4_1:20302178-20302197 None:intergenic 30.0%
AAATATTACTGCAATTGTCC+TGG + chr4_1:20302306-20302325 Msa0539400:intron 30.0%
!!! TGCCCTTTTTTCCTTTATTT+CGG - chr4_1:20302379-20302398 None:intergenic 30.0%
TACAATACACCAAAAATGGT+GGG - chr4_1:20302448-20302467 None:intergenic 30.0%
AAATTGTGTTTATAAGCGGT+GGG + chr4_1:20302743-20302762 Msa0539400:intron 30.0%
! ATCTACTATGTACCTCTTTT+GGG - chr4_1:20303016-20303035 None:intergenic 30.0%
! AATCTACTATGTACCTCTTT+TGG - chr4_1:20303017-20303036 None:intergenic 30.0%
!!! ATATAGATGACCCTTTTTTG+TGG + chr4_1:20303303-20303322 Msa0539400:intron 30.0%
TTCTGTAGTTCGTTATCTTA+AGG - chr4_1:20303439-20303458 None:intergenic 30.0%
CAGTAGTCAAATCCTTATTA+AGG + chr4_1:20303594-20303613 Msa0539400:intron 30.0%
GGTTTCATTACTTAGAAATC+AGG - chr4_1:20303650-20303669 None:intergenic 30.0%
TTGGATATGCATGAAAAACT+GGG - chr4_1:20304069-20304088 None:intergenic 30.0%
TTTGGATATGCATGAAAAAC+TGG - chr4_1:20304070-20304089 None:intergenic 30.0%
TCCAAACTTAAATGTGACAT+AGG + chr4_1:20304084-20304103 Msa0539400:intron 30.0%
! TCCTATGTCACATTTAAGTT+TGG - chr4_1:20304088-20304107 None:intergenic 30.0%
TGTAATAGGAATAATGAGAG+AGG + chr4_1:20304501-20304520 Msa0539400:intron 30.0%
! GTCTTTTCCCTGTAATAAAT+TGG + chr4_1:20304636-20304655 Msa0539400:intron 30.0%
!!! TATTTTAAAATTGGGGAAGG+AGG - chr4_1:20304792-20304811 None:intergenic 30.0%
CTGAATTGCATTAGAAAGAA+TGG - chr4_1:20304847-20304866 None:intergenic 30.0%
CATTCTTTCTAATGCAATTC+AGG + chr4_1:20304845-20304864 Msa0539400:intron 30.0%
!! ACCAACCCTATTTCTAATTA+TGG + chr4_1:20304980-20304999 Msa0539400:intron 30.0%
TCCATAATTAGAAATAGGGT+TGG - chr4_1:20304984-20305003 None:intergenic 30.0%
CTATGAATCAATGTTCTACA+TGG - chr4_1:20305362-20305381 None:intergenic 30.0%
ATGGTTCAATCAAGAGAATA+TGG - chr4_1:20305445-20305464 None:intergenic 30.0%
AGGGTGAGAAGAAAAAATTA+TGG - chr4_1:20305464-20305483 None:intergenic 30.0%
ACAAACATCTTGAAGAAATG+AGG - chr4_1:20305495-20305514 None:intergenic 30.0%
!!! TCATGTTCCAACTTGTTTTT+TGG + chr4_1:20305681-20305700 Msa0539400:intron 30.0%
CCAACACTGTTTCAATTTAA+GGG - chr4_1:20306210-20306229 None:intergenic 30.0%
TCCAACACTGTTTCAATTTA+AGG - chr4_1:20306211-20306230 None:intergenic 30.0%
! TTGCCAATACCTTAAAGTTT+TGG + chr4_1:20306295-20306314 Msa0539400:three_prime_UTR 30.0%
!! CATCCAAAACTTTAAGGTAT+TGG - chr4_1:20306301-20306320 None:intergenic 30.0%
!!! CAATACCTTAAAGTTTTGGA+TGG + chr4_1:20306299-20306318 Msa0539400:three_prime_UTR 30.0%
TGTTAAAGAACTAGTGCAAA+TGG - chr4_1:20306375-20306394 None:intergenic 30.0%
! TTTGCACTAGTTCTTTAACA+TGG + chr4_1:20306375-20306394 Msa0539400:three_prime_UTR 30.0%
CAATGGGAATCAATAAATCT+AGG + chr4_1:20306464-20306483 Msa0539400:three_prime_UTR 30.0%
GGTTACATTTGTTCCAATTT+AGG - chr4_1:20306627-20306646 None:intergenic 30.0%
AAGAAAGAAGGTGGAATGAA+TGG - chr4_1:20298341-20298360 None:intergenic 35.0%
ATCAGTTACAAGAAAGAAGG+TGG - chr4_1:20298350-20298369 None:intergenic 35.0%
GTTTGTTTGAGAGATGAATG+TGG - chr4_1:20298526-20298545 None:intergenic 35.0%
!!! GTTTTGCTTGTTGGTTTTGT+TGG + chr4_1:20298733-20298752 Msa0539400:CDS 35.0%
!!! TTTTCTACAAAGCACTGACA+CGG + chr4_1:20298912-20298931 Msa0539400:intron 35.0%
CTGGTGATAATTTGAGAACA+TGG + chr4_1:20298964-20298983 Msa0539400:intron 35.0%
GATGCTACACAAGTTACATT+TGG + chr4_1:20299080-20299099 Msa0539400:intron 35.0%
AAGCTCAATTAGGATCTGTT+AGG + chr4_1:20299145-20299164 Msa0539400:intron 35.0%
AAACTCTCCATGATAGCTTA+TGG - chr4_1:20299273-20299292 None:intergenic 35.0%
! GAGAGTTTGCTTATCGAAAT+TGG + chr4_1:20299285-20299304 Msa0539400:intron 35.0%
AATTGGCCATAAACAGCTTA+TGG + chr4_1:20299302-20299321 Msa0539400:intron 35.0%
ACATGTCCATAAGCTGTTTA+TGG - chr4_1:20299311-20299330 None:intergenic 35.0%
CATAGACAACGTAACATTTG+TGG - chr4_1:20299769-20299788 None:intergenic 35.0%
ATGCCCAAAATAGTGAAGAA+AGG + chr4_1:20299786-20299805 Msa0539400:intron 35.0%
GACATTACTTACAAGTTACG+AGG + chr4_1:20299822-20299841 Msa0539400:intron 35.0%
GACATTCTTGTCAAAGAGTT+TGG + chr4_1:20299864-20299883 Msa0539400:intron 35.0%
!! ATAAGAGAGTGCTGGAAAAA+GGG - chr4_1:20300039-20300058 None:intergenic 35.0%
!! AATAAGAGAGTGCTGGAAAA+AGG - chr4_1:20300040-20300059 None:intergenic 35.0%
! TTTTCCAGCACTCTCTTATT+TGG + chr4_1:20300040-20300059 Msa0539400:intron 35.0%
CTTATTAGGTGAAACTCATG+TGG - chr4_1:20300122-20300141 None:intergenic 35.0%
ATAGAGAATTAGATGACGTG+TGG - chr4_1:20300246-20300265 None:intergenic 35.0%
TTGTTTGTAGCTGTTTATGC+TGG + chr4_1:20300310-20300329 Msa0539400:CDS 35.0%
TTCAATACTGCTTTGCTCAT+AGG + chr4_1:20300370-20300389 Msa0539400:intron 35.0%
GCAACTAATGTAGCATTTGA+AGG + chr4_1:20300421-20300440 Msa0539400:intron 35.0%
TAATGTAGCATTTGAAGGAC+AGG + chr4_1:20300426-20300445 Msa0539400:intron 35.0%
ACTATCATAGTCTCTATCAG+TGG + chr4_1:20300592-20300611 Msa0539400:CDS 35.0%
CTTATTTCCATAAGCTCTCT+AGG - chr4_1:20301059-20301078 None:intergenic 35.0%
!! CGAGCGTATTCTAAAATTAG+TGG + chr4_1:20301327-20301346 Msa0539400:CDS 35.0%
!! CTTGCTATTGACAAAGCAAT+TGG + chr4_1:20301367-20301386 Msa0539400:CDS 35.0%
GACAAAGCAATTGGAGAAAA+TGG + chr4_1:20301376-20301395 Msa0539400:CDS 35.0%
AATTGGAGAAAATGGCTTCA+AGG + chr4_1:20301384-20301403 Msa0539400:CDS 35.0%
TTCTTCCATATGTATTGGGA+AGG + chr4_1:20301485-20301504 Msa0539400:CDS 35.0%
ATGAGTAGGAATGTTATTCC+TGG - chr4_1:20301631-20301650 None:intergenic 35.0%
ATAATTGTCATGCAGTTGGT+TGG + chr4_1:20302011-20302030 Msa0539400:intron 35.0%
TAATTGTCATGCAGTTGGTT+GGG + chr4_1:20302012-20302031 Msa0539400:intron 35.0%
ACATGGAAAGGATGAAAAGA+AGG - chr4_1:20302205-20302224 None:intergenic 35.0%
ATCACAAAACACACATGGAA+AGG - chr4_1:20302217-20302236 None:intergenic 35.0%
CATCAATCACAAAACACACA+TGG - chr4_1:20302222-20302241 None:intergenic 35.0%
TTTGTGATTGATGTACGAGA+TGG + chr4_1:20302229-20302248 Msa0539400:intron 35.0%
TAAGGTTTCATGAAATTGCC+AGG - chr4_1:20302327-20302346 None:intergenic 35.0%
! CTAAATCTGGACTTTTGGTA+AGG - chr4_1:20302345-20302364 None:intergenic 35.0%
CTTACCAAAAGTCCAGATTT+AGG + chr4_1:20302343-20302362 Msa0539400:intron 35.0%
! GAAACCTAAATCTGGACTTT+TGG - chr4_1:20302350-20302369 None:intergenic 35.0%
!! TTTTCCTTTATTTCGGCCAA+AGG - chr4_1:20302372-20302391 None:intergenic 35.0%
TGGCCGAAATAAAGGAAAAA+AGG + chr4_1:20302373-20302392 Msa0539400:intron 35.0%
GGCCGAAATAAAGGAAAAAA+GGG + chr4_1:20302374-20302393 Msa0539400:intron 35.0%
GTACAATACACCAAAAATGG+TGG - chr4_1:20302449-20302468 None:intergenic 35.0%
TGCGTACAATACACCAAAAA+TGG - chr4_1:20302452-20302471 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - chr4_1:20302476-20302495 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr4_1:20302476-20302495 Msa0539400:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr4_1:20302481-20302500 None:intergenic 35.0%
! TTCCAGCTCTTCCTTTATTT+CGG - chr4_1:20302525-20302544 None:intergenic 35.0%
GAAATTGTGTTTATAAGCGG+TGG + chr4_1:20302742-20302761 Msa0539400:intron 35.0%
! GCCCAATTCAAATTTTACGA+TGG + chr4_1:20302806-20302825 Msa0539400:intron 35.0%
!!! ACGTTACAAACTGGTTTTGT+AGG + chr4_1:20302974-20302993 Msa0539400:intron 35.0%
GTTTCTTACATCCTGTCTAT+GGG + chr4_1:20303049-20303068 Msa0539400:intron 35.0%
GAATGATCTTTCTGTTGTCT+AGG + chr4_1:20303111-20303130 Msa0539400:intron 35.0%
AGTGACACATCCACAAAAAA+GGG - chr4_1:20303316-20303335 None:intergenic 35.0%
CATACCAATACTCAGCTTAA+TGG - chr4_1:20303556-20303575 None:intergenic 35.0%
AGGATTTGACTACTGAGATA+TGG - chr4_1:20303589-20303608 None:intergenic 35.0%
CATTACTTAGAAATCAGGTC+AGG - chr4_1:20303645-20303664 None:intergenic 35.0%
! GTTATTTAAAGCTCGAGTTG+TGG - chr4_1:20303721-20303740 None:intergenic 35.0%
AATTGTGGCTTCATAAGCAA+CGG + chr4_1:20303824-20303843 Msa0539400:intron 35.0%
CATTGCAAAGGATAGAACTT+CGG + chr4_1:20304198-20304217 Msa0539400:intron 35.0%
! CTAGTGACTAATAGTGGAAT+TGG + chr4_1:20304379-20304398 Msa0539400:intron 35.0%
TATTGTAGCACACGTATCAA+AGG + chr4_1:20304421-20304440 Msa0539400:intron 35.0%
ATTGTAGCACACGTATCAAA+GGG + chr4_1:20304422-20304441 Msa0539400:intron 35.0%
!! AAAAGAGTTCTGAGTTGACA+AGG + chr4_1:20304446-20304465 Msa0539400:intron 35.0%
!! AAAGAGTTCTGAGTTGACAA+GGG + chr4_1:20304447-20304466 Msa0539400:intron 35.0%
ATTCTGTTATAGCAGAGAGA+TGG + chr4_1:20304540-20304559 Msa0539400:intron 35.0%
GGGAAAAGACAATAACAATC+TGG - chr4_1:20304626-20304645 None:intergenic 35.0%
CCATTTAACAACTGTCTTTG+AGG - chr4_1:20304738-20304757 None:intergenic 35.0%
CCTCAAAGACAGTTGTTAAA+TGG + chr4_1:20304735-20304754 Msa0539400:intron 35.0%
GCTCAGTTCAAAGAACAAAA+TGG - chr4_1:20304881-20304900 None:intergenic 35.0%
AGTTGAGAATCTGTCTAACA+TGG - chr4_1:20304948-20304967 None:intergenic 35.0%
AAGCAGCAGTAACATTAAAG+AGG - chr4_1:20305018-20305037 None:intergenic 35.0%
GAATCTGAACTTAGTTCACT+TGG + chr4_1:20305055-20305074 Msa0539400:CDS 35.0%
GGTAAAGTTGGATGTTTACT+TGG - chr4_1:20305231-20305250 None:intergenic 35.0%
AATGTTTCTTTGTCTTGGAG+TGG + chr4_1:20305324-20305343 Msa0539400:intron 35.0%
ATGTTTCTTTGTCTTGGAGT+GGG + chr4_1:20305325-20305344 Msa0539400:intron 35.0%
ACTAATAGTCTATCTAGCAG+TGG + chr4_1:20305393-20305412 Msa0539400:intron 35.0%
! TTTCACAATTCTGAAGACAG+TGG + chr4_1:20305524-20305543 Msa0539400:intron 35.0%
AACCTATGTCAGGACTATAA+AGG - chr4_1:20305557-20305576 None:intergenic 35.0%
TAATACAAATCCGACTGCAA+GGG - chr4_1:20305604-20305623 None:intergenic 35.0%
AACAGGTCCAAAAAACAAGT+TGG - chr4_1:20305691-20305710 None:intergenic 35.0%
ATAATCGGATCAAGATTGGA+TGG - chr4_1:20305729-20305748 None:intergenic 35.0%
CTAGATAATCGGATCAAGAT+TGG - chr4_1:20305733-20305752 None:intergenic 35.0%
ACTTCTTATCATGACAATGC+AGG + chr4_1:20305947-20305966 Msa0539400:intron 35.0%
TGATAGATGAGAGAGAATCA+AGG + chr4_1:20306095-20306114 Msa0539400:three_prime_UTR 35.0%
TAATTTACAAGGGGAATGCT+AGG - chr4_1:20306132-20306151 None:intergenic 35.0%
CTTATTGATGAGAATCTTGC+AGG + chr4_1:20306159-20306178 Msa0539400:three_prime_UTR 35.0%
ATTTAAGGGAGCAACACAAA+AGG - chr4_1:20306196-20306215 None:intergenic 35.0%
CCCTTAAATTGAAACAGTGT+TGG + chr4_1:20306207-20306226 Msa0539400:three_prime_UTR 35.0%
CATCTCCATCCAAAACTTTA+AGG - chr4_1:20306307-20306326 None:intergenic 35.0%
!!! TAAAGTTTTGGATGGAGATG+TGG + chr4_1:20306307-20306326 Msa0539400:three_prime_UTR 35.0%
AACTAGTGCAAATGGAATCT+AGG - chr4_1:20306367-20306386 None:intergenic 35.0%
TAGTTCTTTAACATGGTCAG+AGG + chr4_1:20306382-20306401 Msa0539400:three_prime_UTR 35.0%
AGTTCTTTAACATGGTCAGA+GGG + chr4_1:20306383-20306402 Msa0539400:three_prime_UTR 35.0%
TAAATCTAGGGACACACAAA+TGG + chr4_1:20306477-20306496 Msa0539400:intron 35.0%
AAATCTAGGGACACACAAAT+GGG + chr4_1:20306478-20306497 Msa0539400:intron 35.0%
GAAGAAGATGATAGACATGG+TGG - chr4_1:20298427-20298446 None:intergenic 40.0%
TCAATAACACTGACCCATCT+CGG + chr4_1:20298566-20298585 Msa0539400:CDS 40.0%
ACAAACGCTTTAACCGAGAT+GGG - chr4_1:20298582-20298601 None:intergenic 40.0%
AACAAACGCTTTAACCGAGA+TGG - chr4_1:20298583-20298602 None:intergenic 40.0%
AGGTGAATCTGAGAAAGAAG+AGG + chr4_1:20298666-20298685 Msa0539400:CDS 40.0%
ATCTGAGAAAGAAGAGGAAG+AGG + chr4_1:20298672-20298691 Msa0539400:CDS 40.0%
AAAGAAGAGGAAGAGGATGA+AGG + chr4_1:20298679-20298698 Msa0539400:CDS 40.0%
!!! TTGCTTGTTGGTTTTGTTGG+TGG + chr4_1:20298736-20298755 Msa0539400:CDS 40.0%
! CAATTCTCTGGCTTCATTGA+AGG + chr4_1:20298811-20298830 Msa0539400:CDS 40.0%
ACGTGTCCTATTGGAGTAAA+AGG + chr4_1:20299013-20299032 Msa0539400:intron 40.0%
! CTGACACCTTTTACTCCAAT+AGG - chr4_1:20299022-20299041 None:intergenic 40.0%
!! GAGTAAAAGGTGTCAGACAT+TGG + chr4_1:20299026-20299045 Msa0539400:intron 40.0%
CACTTGTGAGACTATTTGAG+AGG + chr4_1:20299411-20299430 Msa0539400:intron 40.0%
CCAAACAGTAGTGCTTATGT+CGG + chr4_1:20299611-20299630 Msa0539400:intron 40.0%
GAATAAGGCTGCATTTGCAT+TGG - chr4_1:20299666-20299685 None:intergenic 40.0%
!! TGCAAATGCAGCCTTATTCA+CGG + chr4_1:20299667-20299686 Msa0539400:intron 40.0%
TTCTTCCAAACCCGTGAATA+AGG - chr4_1:20299681-20299700 None:intergenic 40.0%
AATGTATACCAGTCTGTGTC+TGG + chr4_1:20299722-20299741 Msa0539400:intron 40.0%
ATATAGCTGGTGTATGTTGC+AGG + chr4_1:20299950-20299969 Msa0539400:intron 40.0%
GAATGTAGAAACAACTCACG+AGG + chr4_1:20300002-20300021 Msa0539400:intron 40.0%
! TTCACCAAATAAGAGAGTGC+TGG - chr4_1:20300047-20300066 None:intergenic 40.0%
TGGATACCACACTTAGGAAA+TGG - chr4_1:20300102-20300121 None:intergenic 40.0%
CTGACACTCACTCTCTTATT+AGG - chr4_1:20300136-20300155 None:intergenic 40.0%
TGTAGCTGTTTATGCTGGAT+TGG + chr4_1:20300315-20300334 Msa0539400:CDS 40.0%
TTGCGCGAAGATATATCACA+TGG - chr4_1:20300405-20300424 None:intergenic 40.0%
! GATAGAGACTATGATAGTGC+CGG - chr4_1:20300590-20300609 None:intergenic 40.0%
TAACGTCATATGGCGTTGTT+TGG + chr4_1:20300898-20300917 Msa0539400:intron 40.0%
! TTTCCATAAGCTCTCTAGGA+TGG - chr4_1:20301055-20301074 None:intergenic 40.0%
!!! TTTTAAGGCTTTGTAGGTGG+CGG + chr4_1:20301267-20301286 Msa0539400:intron 40.0%
CCATACCTTCCCAATACATA+TGG - chr4_1:20301493-20301512 None:intergenic 40.0%
CCATATGTATTGGGAAGGTA+TGG + chr4_1:20301490-20301509 Msa0539400:intron 40.0%
TTGCTTGGAATGATATCTCC+AGG + chr4_1:20301595-20301614 Msa0539400:intron 40.0%
AATTGTCATGCAGTTGGTTG+GGG + chr4_1:20302013-20302032 Msa0539400:intron 40.0%
!!! TATGTTAGTGCTGGTGCTTT+TGG + chr4_1:20302057-20302076 Msa0539400:CDS 40.0%
! GTCCAGATTTAGGTTTCCTT+TGG + chr4_1:20302353-20302372 Msa0539400:intron 40.0%
GTTTCCTTTGGCCGAAATAA+AGG + chr4_1:20302365-20302384 Msa0539400:intron 40.0%
TAAAGGAAAAAAGGGCAACC+CGG + chr4_1:20302382-20302401 Msa0539400:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr4_1:20302482-20302501 None:intergenic 40.0%
! TTTTTACACAAGAGGCTGTC+CGG + chr4_1:20302484-20302503 Msa0539400:intron 40.0%
GTTTCCTTTGGCCGAAATAA+AGG + chr4_1:20302365-20302384 Msa0539400:intron 40.0%
! TCTTCCTTTATTTCGGCCAA+AGG - chr4_1:20302518-20302537 None:intergenic 40.0%
CTAACTCGTCTCAACAAAAC+CGG - chr4_1:20302786-20302805 None:intergenic 40.0%
TGAGTCTATCCAAGATCCAT+TGG + chr4_1:20302833-20302852 Msa0539400:intron 40.0%
AGCTCATACTCATCTGATGT+GGG - chr4_1:20302923-20302942 None:intergenic 40.0%
AGTTAGTCCTAACCCAAAAG+AGG + chr4_1:20303001-20303020 Msa0539400:intron 40.0%
!!! CTATGTACCTCTTTTGGGTT+AGG - chr4_1:20303011-20303030 None:intergenic 40.0%
GGTTTCTTACATCCTGTCTA+TGG + chr4_1:20303048-20303067 Msa0539400:intron 40.0%
TTGACCAAGAAATGTTTGGC+AGG + chr4_1:20303175-20303194 Msa0539400:intron 40.0%
CAGTGACACATCCACAAAAA+AGG - chr4_1:20303317-20303336 None:intergenic 40.0%
CTAATGCATCTTCCTGAACA+GGG - chr4_1:20303396-20303415 None:intergenic 40.0%
ACTAATGCATCTTCCTGAAC+AGG - chr4_1:20303397-20303416 None:intergenic 40.0%
GACTACTGAGATATGGAAAG+TGG - chr4_1:20303582-20303601 None:intergenic 40.0%
TTCTGCACACGTCCTTAATA+AGG - chr4_1:20303609-20303628 None:intergenic 40.0%
CTTAGAAATCAGGTCAGGTT+TGG - chr4_1:20303640-20303659 None:intergenic 40.0%
TACCTCTCTATTTGAGTCAG+GGG - chr4_1:20303748-20303767 None:intergenic 40.0%
GTACCTCTCTATTTGAGTCA+GGG - chr4_1:20303749-20303768 None:intergenic 40.0%
TGTACCTCTCTATTTGAGTC+AGG - chr4_1:20303750-20303769 None:intergenic 40.0%
! NAATTGGCTGCCCATTTTCA+TGG + chr4_1:20303971-20303990 Msa0539400:intron 40.0%
TTGGAAAGGGCCATGAAAAT+GGG - chr4_1:20303984-20304003 None:intergenic 40.0%
TTTGGAAAGGGCCATGAAAA+TGG - chr4_1:20303985-20304004 None:intergenic 40.0%
! TCATGGCCCTTTCCAAATTT+TGG + chr4_1:20303988-20304007 Msa0539400:intron 40.0%
CTCTGGCCAAAATTTGGAAA+GGG - chr4_1:20303997-20304016 None:intergenic 40.0%
ACTCTGGCCAAAATTTGGAA+AGG - chr4_1:20303998-20304017 None:intergenic 40.0%
!! TTCCAAATTTTGGCCAGAGT+TGG + chr4_1:20303998-20304017 Msa0539400:intron 40.0%
ATAGGAAACTACCAAGTGCA+GGG + chr4_1:20304102-20304121 Msa0539400:intron 40.0%
GTTGAACTTAAAGCTACCCA+TGG - chr4_1:20304135-20304154 None:intergenic 40.0%
! GGGAAAAGTAAGCATTGCAA+AGG + chr4_1:20304186-20304205 Msa0539400:intron 40.0%
GCTCGATTGAAAATGTCACA+CGG + chr4_1:20304251-20304270 Msa0539400:intron 40.0%
CTCGATTGAAAATGTCACAC+GGG + chr4_1:20304252-20304271 Msa0539400:intron 40.0%
ATAGAATCAGCTTGTCCTCA+AGG - chr4_1:20304318-20304337 None:intergenic 40.0%
! AGGACAAGCTGATTCTATAG+CGG + chr4_1:20304320-20304339 Msa0539400:intron 40.0%
GTATTGTTAGCATCGTGAAG+TGG + chr4_1:20304346-20304365 Msa0539400:intron 40.0%
TTAGCATCGTGAAGTGGAAT+GGG + chr4_1:20304352-20304371 Msa0539400:intron 40.0%
TTCCACTATTAGTCACTAGC+TGG - chr4_1:20304378-20304397 None:intergenic 40.0%
TTGTAGCACACGTATCAAAG+GGG + chr4_1:20304423-20304442 Msa0539400:intron 40.0%
TGGCAGGAGTTAGTTGTAAT+AGG + chr4_1:20304487-20304506 Msa0539400:intron 40.0%
AATAGTCTATCAGCCCAAGT+CGG - chr4_1:20304600-20304619 None:intergenic 40.0%
GCTGCTGCCAATTTATTACA+GGG - chr4_1:20304646-20304665 None:intergenic 40.0%
AGCTGCTGCCAATTTATTAC+AGG - chr4_1:20304647-20304666 None:intergenic 40.0%
AGCTTGACCTTGTGTTCTTT+AGG + chr4_1:20304697-20304716 Msa0539400:intron 40.0%
GCTTGACCTTGTGTTCTTTA+GGG + chr4_1:20304698-20304717 Msa0539400:intron 40.0%
GTTCTTTGAACTGAGCCTAT+CGG + chr4_1:20304885-20304904 Msa0539400:intron 40.0%
TCAACCAAGTGTTATCCGAT+AGG - chr4_1:20304903-20304922 None:intergenic 40.0%
!! GAAATAGGGTTGGTATAGCA+AGG - chr4_1:20304974-20304993 None:intergenic 40.0%
TCTGAACTTAGTTCACTTGG+AGG + chr4_1:20305058-20305077 Msa0539400:CDS 40.0%
ATATGTAGCAGCTAATGCAG+TGG - chr4_1:20305122-20305141 None:intergenic 40.0%
ATATGTCACGAAGCTTGCAA+AGG + chr4_1:20305138-20305157 Msa0539400:CDS 40.0%
ATGCACTAAGAGGGTAAAGT+TGG - chr4_1:20305243-20305262 None:intergenic 40.0%
TGCCTTTATAGTCCTGACAT+AGG + chr4_1:20305552-20305571 Msa0539400:intron 40.0%
AATACAAATCCGACTGCAAG+GGG - chr4_1:20305603-20305622 None:intergenic 40.0%
GTAATACAAATCCGACTGCA+AGG - chr4_1:20305605-20305624 None:intergenic 40.0%
GGCTGCTAACTTTAGTAAAC+AGG - chr4_1:20305708-20305727 None:intergenic 40.0%
AGTGACGCGATCTAGATAAT+CGG - chr4_1:20305744-20305763 None:intergenic 40.0%
TTGAAAACTCCAGAGGACAA+GGG - chr4_1:20305814-20305833 None:intergenic 40.0%
ATTGAAAACTCCAGAGGACA+AGG - chr4_1:20305815-20305834 None:intergenic 40.0%
CACATCATTGAAAACTCCAG+AGG - chr4_1:20305821-20305840 None:intergenic 40.0%
TGACACACATTTGCGAATGA+AGG + chr4_1:20306019-20306038 Msa0539400:three_prime_UTR 40.0%
AATGAAGGCAGGTCTATGAT+CGG + chr4_1:20306034-20306053 Msa0539400:three_prime_UTR 40.0%
TGAGAGAGAATCAAGGAAAG+TGG + chr4_1:20306102-20306121 Msa0539400:three_prime_UTR 40.0%
GATGTGGTGTCTTAATCTCT+TGG + chr4_1:20306323-20306342 Msa0539400:three_prime_UTR 40.0%
TACTTACCCATCGACAACAA+TGG + chr4_1:20306447-20306466 Msa0539400:three_prime_UTR 40.0%
ACTTACCCATCGACAACAAT+GGG + chr4_1:20306448-20306467 Msa0539400:three_prime_UTR 40.0%
TGATTCCCATTGTTGTCGAT+GGG - chr4_1:20306456-20306475 None:intergenic 40.0%
TTGATTCCCATTGTTGTCGA+TGG - chr4_1:20306457-20306476 None:intergenic 40.0%
GAAGATGATAGACATGGTGG+TGG - chr4_1:20298424-20298443 None:intergenic 45.0%
!! GATGAAGGTGCTGCTTTGAA+GGG + chr4_1:20298694-20298713 Msa0539400:CDS 45.0%
AAGCAAAACACCAGCCAGTA+GGG - chr4_1:20298722-20298741 None:intergenic 45.0%
!!! GTTGGTGGTTTTGCTTCTGT+TGG + chr4_1:20298751-20298770 Msa0539400:CDS 45.0%
TGACACTGACACGTAAACAC+TGG + chr4_1:20298945-20298964 Msa0539400:intron 45.0%
TGCATGTGTACGTGTCCTAT+TGG + chr4_1:20299004-20299023 Msa0539400:intron 45.0%
GCACTCGTGAAAGCTCAATT+AGG + chr4_1:20299135-20299154 Msa0539400:intron 45.0%
GAAACAGCCTCGTAGTGTTT+GGG - chr4_1:20299357-20299376 None:intergenic 45.0%
CCGACATAAGCACTACTGTT+TGG - chr4_1:20299614-20299633 None:intergenic 45.0%
!! GCAAATGCAGCCTTATTCAC+GGG + chr4_1:20299668-20299687 Msa0539400:intron 45.0%
CACTAAAACCAGACACAGAC+TGG - chr4_1:20299733-20299752 None:intergenic 45.0%
TAGGTCCTACCACTTTACGT+GGG + chr4_1:20300074-20300093 Msa0539400:intron 45.0%
GAAATGGATCCCACGTAAAG+TGG - chr4_1:20300086-20300105 None:intergenic 45.0%
TGGGATCCATTTCCTAAGTG+TGG + chr4_1:20300093-20300112 Msa0539400:intron 45.0%
CTCATGTGGATACCACACTT+AGG - chr4_1:20300108-20300127 None:intergenic 45.0%
GTGAGTGTCAGAGTGAACAT+TGG + chr4_1:20300145-20300164 Msa0539400:intron 45.0%
TGAACAGGTTATGGTTCAGC+TGG + chr4_1:20300280-20300299 Msa0539400:intron 45.0%
! AGCTGTTTATGCTGGATTGG+AGG + chr4_1:20300318-20300337 Msa0539400:CDS 45.0%
ATTCCCTTAACCATGTCAGC+CGG + chr4_1:20300544-20300563 Msa0539400:CDS 45.0%
AAGGGATCCAAAGAGAAGTC+CGG - chr4_1:20300566-20300585 None:intergenic 45.0%
CTTCTCTTTGGATCCCTTAC+CGG + chr4_1:20300568-20300587 Msa0539400:CDS 45.0%
!! GACTATGATAGTGCCGGTAA+GGG - chr4_1:20300584-20300603 None:intergenic 45.0%
!! AGACTATGATAGTGCCGGTA+AGG - chr4_1:20300585-20300604 None:intergenic 45.0%
TAGCCATCCTAGAGAGCTTA+TGG + chr4_1:20301049-20301068 Msa0539400:intron 45.0%
CCAGTGAAAATGGCAGCAAA+GGG - chr4_1:20301432-20301451 None:intergenic 45.0%
!!! CCTTTGCTGCCATTTTCACT+GGG + chr4_1:20301430-20301449 Msa0539400:CDS 45.0%
!!! CTTTGCTGCCATTTTCACTG+GGG + chr4_1:20301431-20301450 Msa0539400:CDS 45.0%
ATTCCTGGAAATCACACTCC+TGG - chr4_1:20301616-20301635 None:intergenic 45.0%
CTAACATAAGCCCATGTTCC+TGG - chr4_1:20302045-20302064 None:intergenic 45.0%
ACATGGGCTTATGTTAGTGC+TGG + chr4_1:20302048-20302067 Msa0539400:CDS 45.0%
GATGTACGAGATGGCGATAA+AGG + chr4_1:20302238-20302257 Msa0539400:intron 45.0%
GGCCAAAGGAAACCTAAATC+TGG - chr4_1:20302358-20302377 None:intergenic 45.0%
! TTTTACACAAGAGGCTGTCC+GGG + chr4_1:20302485-20302504 Msa0539400:intron 45.0%
! GGTGCGAGATCAGAATGTTT+TGG + chr4_1:20302625-20302644 Msa0539400:intron 45.0%
TCTGTTGAGAAGTCTCGCAT+TGG + chr4_1:20302705-20302724 Msa0539400:intron 45.0%
!!! CGGTTTTGTTGAGACGAGTT+AGG + chr4_1:20302784-20302803 Msa0539400:intron 45.0%
CAGCTCATACTCATCTGATG+TGG - chr4_1:20302924-20302943 None:intergenic 45.0%
GCAGTTGTCACGTTACAAAC+TGG + chr4_1:20302965-20302984 Msa0539400:intron 45.0%
CAGACCTGCCAAACATTTCT+TGG - chr4_1:20303182-20303201 None:intergenic 45.0%
CAAGAAATGTTTGGCAGGTC+TGG + chr4_1:20303180-20303199 Msa0539400:intron 45.0%
AATGTTTGGCAGGTCTGGTA+TGG + chr4_1:20303185-20303204 Msa0539400:intron 45.0%
GCAGGTCTGGTATGGAATAT+GGG + chr4_1:20303193-20303212 Msa0539400:intron 45.0%
AAGCTCAGGCATAAAGCAAC+TGG - chr4_1:20303222-20303241 None:intergenic 45.0%
GCTTTATGCCTGAGCTTCTT+TGG + chr4_1:20303225-20303244 Msa0539400:intron 45.0%
TAATCCAGCCAAAGAAGCTC+AGG - chr4_1:20303236-20303255 None:intergenic 45.0%
AGCATGTGGAACTCCTCTTT+CGG - chr4_1:20303340-20303359 None:intergenic 45.0%
!! GGACAGACTGTTTCTGATGA+TGG + chr4_1:20303370-20303389 Msa0539400:intron 45.0%
GCTATGAGGCAAAGTAGCAT+AGG - chr4_1:20303507-20303526 None:intergenic 45.0%
CTCATAGCAGCCACAGAAAT+GGG + chr4_1:20303519-20303538 Msa0539400:intron 45.0%
GGGTCCATTAAGCTGAGTAT+TGG + chr4_1:20303549-20303568 Msa0539400:intron 45.0%
AGAAATCAGGTCAGGTTTGG+TGG - chr4_1:20303637-20303656 None:intergenic 45.0%
ACTTAATTCAAGCGCCACAG+AGG - chr4_1:20303680-20303699 None:intergenic 45.0%
CTCCAACTCTGGCCAAAATT+TGG - chr4_1:20304003-20304022 None:intergenic 45.0%
!! AATTTTGGCCAGAGTTGGAG+AGG + chr4_1:20304003-20304022 Msa0539400:intron 45.0%
GTACACGCTTAACCTACCAA+CGG + chr4_1:20304030-20304049 Msa0539400:intron 45.0%
AAATTCTCGAGTCCGTTGGT+AGG - chr4_1:20304045-20304064 None:intergenic 45.0%
CATAGGAAACTACCAAGTGC+AGG + chr4_1:20304101-20304120 Msa0539400:intron 45.0%
TAGGAAACTACCAAGTGCAG+GGG + chr4_1:20304103-20304122 Msa0539400:intron 45.0%
TTAGGCTCAGCATCAGATTC+AGG - chr4_1:20304157-20304176 None:intergenic 45.0%
!!! ACTTTTCCCAGCACTGGTTT+AGG - chr4_1:20304175-20304194 None:intergenic 45.0%
!! ATGCTTACTTTTCCCAGCAC+TGG - chr4_1:20304181-20304200 None:intergenic 45.0%
GATTGAAAATGTCACACGGG+AGG + chr4_1:20304255-20304274 Msa0539400:intron 45.0%
TTGTCCTCAAGGCTGAACTT+GGG - chr4_1:20304307-20304326 None:intergenic 45.0%
! GGACAAGCTGATTCTATAGC+GGG + chr4_1:20304321-20304340 Msa0539400:intron 45.0%
GTTAGCATCGTGAAGTGGAA+TGG + chr4_1:20304351-20304370 Msa0539400:intron 45.0%
! CTAATAGTGGAATTGGCCCA+AGG + chr4_1:20304386-20304405 Msa0539400:intron 45.0%
!! AGTTCTGAGTTGACAAGGGA+GGG + chr4_1:20304451-20304470 Msa0539400:intron 45.0%
GAGAGAGGTGAGTGATATCA+TGG + chr4_1:20304516-20304535 Msa0539400:intron 45.0%
TCTACAGAACTGACACCTCA+TGG - chr4_1:20304674-20304693 None:intergenic 45.0%
CTCTGTCCCTAAAGAACACA+AGG - chr4_1:20304707-20304726 None:intergenic 45.0%
TGAGCCTATCGGATAACACT+TGG + chr4_1:20304896-20304915 Msa0539400:intron 45.0%
TACCCTCTTAGTGCATCGTT+AGG + chr4_1:20305247-20305266 Msa0539400:intron 45.0%
ACCCTCTTAGTGCATCGTTA+GGG + chr4_1:20305248-20305267 Msa0539400:intron 45.0%
TCCCTAACGATGCACTAAGA+GGG - chr4_1:20305252-20305271 None:intergenic 45.0%
ATCCCTAACGATGCACTAAG+AGG - chr4_1:20305253-20305272 None:intergenic 45.0%
TCCTGACATAGGTTCATACC+TGG + chr4_1:20305563-20305582 Msa0539400:intron 45.0%
CCTGACATAGGTTCATACCT+GGG + chr4_1:20305564-20305583 Msa0539400:intron 45.0%
ATGCATGATTGCGTGAATGC+AGG - chr4_1:20305627-20305646 None:intergenic 45.0%
ATGCATGATTTCGTGACTGC+TGG + chr4_1:20305771-20305790 Msa0539400:intron 45.0%
TGCATGATTTCGTGACTGCT+GGG + chr4_1:20305772-20305791 Msa0539400:intron 45.0%
TGAAAACTCCAGAGGACAAG+GGG - chr4_1:20305813-20305832 None:intergenic 45.0%
AGTTGCCTCTAGTCTCTACT+GGG - chr4_1:20306000-20306019 None:intergenic 45.0%
ACACATTTGCGAATGAAGGC+AGG + chr4_1:20306023-20306042 Msa0539400:three_prime_UTR 45.0%
GTGGTGTCTTAATCTCTTGG+TGG + chr4_1:20306326-20306345 Msa0539400:three_prime_UTR 45.0%
TGTCGATGGGTAAGTACAAG+AGG - chr4_1:20306443-20306462 None:intergenic 45.0%
!! TTCATATATATATATATATA+AGG + chr4_1:20300753-20300772 Msa0539400:intron 5.0%
!! AATTTAAATAAATCTATAAA+AGG - chr4_1:20302572-20302591 None:intergenic 5.0%
!! TTTATAGATTTATTTAAATT+AGG + chr4_1:20302572-20302591 Msa0539400:intron 5.0%
!!! TAATTCTTTATTTTAAAATT+GGG - chr4_1:20304800-20304819 None:intergenic 5.0%
!!! TTAATTCTTTATTTTAAAAT+TGG - chr4_1:20304801-20304820 None:intergenic 5.0%
!! AAAATAAAGAATTAAAAAAT+TGG + chr4_1:20304806-20304825 Msa0539400:intron 5.0%
!! TTAATGTTAAAATTTATTAT+TGG + chr4_1:20305851-20305870 Msa0539400:intron 5.0%
!! GGATGAAGGTGCTGCTTTGA+AGG + chr4_1:20298693-20298712 Msa0539400:CDS 50.0%
!! TGCTTTGAAGGGTACCCTAC+TGG + chr4_1:20298705-20298724 Msa0539400:CDS 50.0%
CAAGCAAAACACCAGCCAGT+AGG - chr4_1:20298723-20298742 None:intergenic 50.0%
! CTGGCTGGTGTTTTGCTTGT+TGG + chr4_1:20298724-20298743 Msa0539400:CDS 50.0%
CATTGGCACATGTCAGACAC+CGG + chr4_1:20299043-20299062 Msa0539400:intron 50.0%
AAGCTCTCCCAAACACTACG+AGG + chr4_1:20299347-20299366 Msa0539400:intron 50.0%
CGAAACAGCCTCGTAGTGTT+TGG - chr4_1:20299358-20299377 None:intergenic 50.0%
!! TGCAGCCTTATTCACGGGTT+TGG + chr4_1:20299673-20299692 Msa0539400:intron 50.0%
GTAGGTCCTACCACTTTACG+TGG + chr4_1:20300073-20300092 Msa0539400:intron 50.0%
TGGATCCCACGTAAAGTGGT+AGG - chr4_1:20300082-20300101 None:intergenic 50.0%
GGCAGGAATTGCAAGGATCT+GGG - chr4_1:20300524-20300543 None:intergenic 50.0%
TGGCAGGAATTGCAAGGATC+TGG - chr4_1:20300525-20300544 None:intergenic 50.0%
AGGGAATGGCAGGAATTGCA+AGG - chr4_1:20300531-20300550 None:intergenic 50.0%
GACATGGTTAAGGGAATGGC+AGG - chr4_1:20300541-20300560 None:intergenic 50.0%
GGCTGACATGGTTAAGGGAA+TGG - chr4_1:20300545-20300564 None:intergenic 50.0%
AGTCCGGCTGACATGGTTAA+GGG - chr4_1:20300550-20300569 None:intergenic 50.0%
AAGTCCGGCTGACATGGTTA+AGG - chr4_1:20300551-20300570 None:intergenic 50.0%
AAAGAGAAGTCCGGCTGACA+TGG - chr4_1:20300557-20300576 None:intergenic 50.0%
ATGTCAGCCGGACTTCTCTT+TGG + chr4_1:20300556-20300575 Msa0539400:CDS 50.0%
CAAAGGGCTCAAACGAAGCA+GGG - chr4_1:20301416-20301435 None:intergenic 50.0%
!!! CCCTTTGCTGCCATTTTCAC+TGG + chr4_1:20301429-20301448 Msa0539400:CDS 50.0%
CCCAGTGAAAATGGCAGCAA+AGG - chr4_1:20301433-20301452 None:intergenic 50.0%
! TCTCCAGGAGTGTGATTTCC+AGG + chr4_1:20301610-20301629 Msa0539400:intron 50.0%
GGCCGAAATAAAGGAAGAGC+TGG + chr4_1:20302520-20302539 Msa0539400:intron 50.0%
CTCAACAAAACCGGCCTGTA+CGG - chr4_1:20302777-20302796 None:intergenic 50.0%
GGCAGGTCTGGTATGGAATA+TGG + chr4_1:20303192-20303211 Msa0539400:intron 50.0%
TATGCCTGAGCTTCTTTGGC+TGG + chr4_1:20303229-20303248 Msa0539400:intron 50.0%
TTCCACATGCTCTTGCACAC+TGG + chr4_1:20303349-20303368 Msa0539400:intron 50.0%
!! TTCTGATGATGGCCCTGTTC+AGG + chr4_1:20303381-20303400 Msa0539400:intron 50.0%
CCATTTCTGTGGCTGCTATG+AGG - chr4_1:20303521-20303540 None:intergenic 50.0%
CCTCATAGCAGCCACAGAAA+TGG + chr4_1:20303518-20303537 Msa0539400:intron 50.0%
! AGCCACAGAAATGGGCTCAT+CGG + chr4_1:20303527-20303546 Msa0539400:intron 50.0%
TGAAACCAAAGTCGCCTCTG+TGG + chr4_1:20303663-20303682 Msa0539400:intron 50.0%
AGCCCCTGACTCAAATAGAG+AGG + chr4_1:20303743-20303762 Msa0539400:intron 50.0%
GTACTACACCTCTCCAACTC+TGG - chr4_1:20304014-20304033 None:intergenic 50.0%
GGGTAAATTCTCGAGTCCGT+TGG - chr4_1:20304049-20304068 None:intergenic 50.0%
AGGAAACTACCAAGTGCAGG+GGG + chr4_1:20304104-20304123 Msa0539400:intron 50.0%
TGTCCTCAAGGCTGAACTTG+GGG - chr4_1:20304306-20304325 None:intergenic 50.0%
CTTGTCCTCAAGGCTGAACT+TGG - chr4_1:20304308-20304327 None:intergenic 50.0%
GGCCAGCTAGTGACTAATAG+TGG + chr4_1:20304373-20304392 Msa0539400:intron 50.0%
!! GAGTTCTGAGTTGACAAGGG+AGG + chr4_1:20304450-20304469 Msa0539400:intron 50.0%
AACAATCAGCTGCTGACGCT+TGG + chr4_1:20305082-20305101 Msa0539400:CDS 50.0%
ACAATCAGCTGCTGACGCTT+GGG + chr4_1:20305083-20305102 Msa0539400:CDS 50.0%
CCCAGGTATGAACCTATGTC+AGG - chr4_1:20305567-20305586 None:intergenic 50.0%
CATAGGTTCATACCTGGGCA+AGG + chr4_1:20305569-20305588 Msa0539400:intron 50.0%
CTAGACCCAGTAGAGACTAG+AGG + chr4_1:20305992-20306011 Msa0539400:exon 50.0%
CAGTTGCCTCTAGTCTCTAC+TGG - chr4_1:20306001-20306020 None:intergenic 50.0%
AGGCAGGTCTATGATCGGAT+TGG + chr4_1:20306039-20306058 Msa0539400:three_prime_UTR 50.0%
GGCAGGTCTATGATCGGATT+GGG + chr4_1:20306040-20306059 Msa0539400:three_prime_UTR 50.0%
GCAGGTCTATGATCGGATTG+GGG + chr4_1:20306041-20306060 Msa0539400:three_prime_UTR 50.0%
TGTTGGAACTCAAGTGCGAG+TGG + chr4_1:20306224-20306243 Msa0539400:three_prime_UTR 50.0%
TGCGAGTGGTGGTTAGAAGT+TGG + chr4_1:20306238-20306257 Msa0539400:three_prime_UTR 50.0%
!! TTGAAGGGTACCCTACTGGC+TGG + chr4_1:20298709-20298728 Msa0539400:CDS 55.0%
CACATGTCAGACACCGGACA+TGG + chr4_1:20299049-20299068 Msa0539400:intron 55.0%
GCATCGTGACACTCCATGTC+CGG - chr4_1:20299065-20299084 None:intergenic 55.0%
GCAAAGGGCTCAAACGAAGC+AGG - chr4_1:20301417-20301436 None:intergenic 55.0%
AGTTGGTTGGGGATGCTTCC+AGG + chr4_1:20302024-20302043 Msa0539400:intron 55.0%
TGGGGATGCTTCCAGGAACA+TGG + chr4_1:20302031-20302050 Msa0539400:CDS 55.0%
GGGGATGCTTCCAGGAACAT+GGG + chr4_1:20302032-20302051 Msa0539400:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr4_1:20302404-20302423 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr4_1:20302408-20302427 Msa0539400:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr4_1:20302409-20302428 Msa0539400:intron 55.0%
! AAAATGGTGGGACCCCTTCC+CGG - chr4_1:20302436-20302455 None:intergenic 55.0%
! GGAAGGGGTCCCACCATTTT+TGG + chr4_1:20302436-20302455 Msa0539400:intron 55.0%
CTGTCCGGGAAGGTTTCCTT+TGG + chr4_1:20302499-20302518 Msa0539400:intron 55.0%
TCGGCCAAAGGAAACCTTCC+CGG - chr4_1:20302506-20302525 None:intergenic 55.0%
GGTGGGAATTGTCACCGTAC+AGG + chr4_1:20302760-20302779 Msa0539400:intron 55.0%
GGAATTGTCACCGTACAGGC+CGG + chr4_1:20302764-20302783 Msa0539400:intron 55.0%
CAAGATCCATTGGACCACCC+CGG + chr4_1:20302843-20302862 Msa0539400:intron 55.0%
! TGACATCTGGAGTGTGACCG+GGG - chr4_1:20302863-20302882 None:intergenic 55.0%
! CTGACATCTGGAGTGTGACC+GGG - chr4_1:20302864-20302883 None:intergenic 55.0%
! CCTGACATCTGGAGTGTGAC+CGG - chr4_1:20302865-20302884 None:intergenic 55.0%
ACTGTCCTACTCCAGTGGGA+CGG - chr4_1:20303080-20303099 None:intergenic 55.0%
CGTCACTGTCCTACTCCAGT+GGG - chr4_1:20303084-20303103 None:intergenic 55.0%
ACGTCACTGTCCTACTCCAG+TGG - chr4_1:20303085-20303104 None:intergenic 55.0%
! GGATGTGTCACTGCCGAAAG+AGG + chr4_1:20303324-20303343 Msa0539400:intron 55.0%
! GTCCAGTGTGCAAGAGCATG+TGG - chr4_1:20303354-20303373 None:intergenic 55.0%
! GCCACAGAAATGGGCTCATC+GGG + chr4_1:20303528-20303547 Msa0539400:intron 55.0%
! CCACAGAAATGGGCTCATCG+GGG + chr4_1:20303529-20303548 Msa0539400:intron 55.0%
AGCAACGGTCTGTTGCCATG+AGG + chr4_1:20303839-20303858 Msa0539400:intron 55.0%
TGCTGAGCCTAAACCAGTGC+TGG + chr4_1:20304165-20304184 Msa0539400:intron 55.0%
GCTGAGCCTAAACCAGTGCT+GGG + chr4_1:20304166-20304185 Msa0539400:intron 55.0%
CTGAACTTGGGGAACTGGCT+AGG - chr4_1:20304295-20304314 None:intergenic 55.0%
CAAGGCTGAACTTGGGGAAC+TGG - chr4_1:20304300-20304319 None:intergenic 55.0%
GTTCCCCAAGTTCAGCCTTG+AGG + chr4_1:20304300-20304319 Msa0539400:intron 55.0%
GGGAGGGAGAGAAGTGACAT+TGG + chr4_1:20304467-20304486 Msa0539400:intron 55.0%
GGGAGAGAAGTGACATTGGC+AGG + chr4_1:20304471-20304490 Msa0539400:intron 55.0%
AGTCTATCAGCCCAAGTCGG+TGG - chr4_1:20304597-20304616 None:intergenic 55.0%
TGGCAGCAGCTATGTCCATG+AGG + chr4_1:20304656-20304675 Msa0539400:intron 55.0%
GCCAAGTTTCCCCTTGCAGT+CGG + chr4_1:20305591-20305610 Msa0539400:intron 55.0%
TCCGACTGCAAGGGGAAACT+TGG - chr4_1:20305595-20305614 None:intergenic 55.0%
TCCAGAGGACAAGGGGTTGT+GGG - chr4_1:20305806-20305825 None:intergenic 55.0%
TGGAACTCAAGTGCGAGTGG+TGG + chr4_1:20306227-20306246 Msa0539400:three_prime_UTR 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr4_1:20302403-20302422 None:intergenic 60.0%
ACACAAGAGGCTGTCCGGGA+AGG + chr4_1:20302489-20302508 Msa0539400:intron 60.0%
CGGGGTGGTCCAATGGATCT+TGG - chr4_1:20302845-20302864 None:intergenic 60.0%
CCGGTCACACTCCAGATGTC+AGG + chr4_1:20302862-20302881 Msa0539400:intron 60.0%
CACACTCCAGATGTCAGGCC+TGG + chr4_1:20302867-20302886 Msa0539400:intron 60.0%
ACTCCAGATGTCAGGCCTGG+TGG + chr4_1:20302870-20302889 Msa0539400:intron 60.0%
GGACGGCATCTCCCATAGAC+AGG - chr4_1:20303063-20303082 None:intergenic 60.0%
TATGGGAGATGCCGTCCCAC+TGG + chr4_1:20303066-20303085 Msa0539400:intron 60.0%
AGATGCCGTCCCACTGGAGT+AGG + chr4_1:20303072-20303091 Msa0539400:intron 60.0%
CCCCGATGAGCCCATTTCTG+TGG - chr4_1:20303532-20303551 None:intergenic 60.0%
AAGCGCCACAGAGGCGACTT+TGG - chr4_1:20303671-20303690 None:intergenic 60.0%
ATGGCAACACCCCCTGCACT+TGG - chr4_1:20304116-20304135 None:intergenic 60.0%
!! AAGTGCAGGGGGTGTTGCCA+TGG + chr4_1:20304115-20304134 Msa0539400:intron 60.0%
!! AGTGCAGGGGGTGTTGCCAT+GGG + chr4_1:20304116-20304135 Msa0539400:intron 60.0%
! TGATGAGGGAGCCACCGACT+TGG + chr4_1:20304583-20304602 Msa0539400:intron 60.0%
!! GATGAGGGAGCCACCGACTT+GGG + chr4_1:20304584-20304603 Msa0539400:intron 60.0%
GACGCTTGGGCTTGGACTCT+TGG + chr4_1:20305096-20305115 Msa0539400:CDS 60.0%
TCCCACAACCCCTTGTCCTC+TGG + chr4_1:20305802-20305821 Msa0539400:intron 60.0%
CTCCAGAGGACAAGGGGTTG+TGG - chr4_1:20305807-20305826 None:intergenic 60.0%
TTCCCGGACCCTGCGTATGC+GGG - chr4_1:20302420-20302439 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr4_1:20302421-20302440 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr4_1:20302420-20302439 Msa0539400:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr4_1:20302421-20302440 Msa0539400:intron 65.0%
GTGTGACCGGGGTGGTCCAA+TGG - chr4_1:20302852-20302871 None:intergenic 65.0%
! CATCTGGAGTGTGACCGGGG+TGG - chr4_1:20302860-20302879 None:intergenic 65.0%
ACGCCACCAGGCCTGACATC+TGG - chr4_1:20302876-20302895 None:intergenic 65.0%
! AGATGTCAGGCCTGGTGGCG+TGG + chr4_1:20302875-20302894 Msa0539400:intron 65.0%
CAGCTGCTGACGCTTGGGCT+TGG + chr4_1:20305088-20305107 Msa0539400:CDS 65.0%
!! GGGGAAACTTGGCCTTGCCC+AGG - chr4_1:20305584-20305603 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTC+CGG + chr4_1:20302414-20302433 Msa0539400:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr4_1:20302415-20302434 Msa0539400:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr4_1:20302419-20302438 Msa0539400:intron 70.0%
! AGGCCTGGTGGCGTGGCGAT+CGG + chr4_1:20302882-20302901 Msa0539400:intron 70.0%
ACACCGATCGCCACGCCACC+AGG - chr4_1:20302888-20302907 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 20298268 20306678 20298268 ID=Msa0539400;Name=Msa0539400
chr4_1 mRNA 20298268 20306678 20298268 ID=Msa0539400-mRNA-1;Parent=Msa0539400;Name=Msa0539400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=135|1|1|1|0.85|0.75|8|657|334
chr4_1 exon 20298268 20298832 20298268 ID=Msa0539400-mRNA-1:exon:5812;Parent=Msa0539400-mRNA-1
chr4_1 exon 20300287 20300339 20300287 ID=Msa0539400-mRNA-1:exon:5813;Parent=Msa0539400-mRNA-1
chr4_1 exon 20300526 20300618 20300526 ID=Msa0539400-mRNA-1:exon:5814;Parent=Msa0539400-mRNA-1
chr4_1 exon 20301283 20301506 20301283 ID=Msa0539400-mRNA-1:exon:5815;Parent=Msa0539400-mRNA-1
chr4_1 exon 20302026 20302092 20302026 ID=Msa0539400-mRNA-1:exon:5816;Parent=Msa0539400-mRNA-1
chr4_1 exon 20305049 20305159 20305049 ID=Msa0539400-mRNA-1:exon:5817;Parent=Msa0539400-mRNA-1
chr4_1 exon 20305969 20306495 20305969 ID=Msa0539400-mRNA-1:exon:5818;Parent=Msa0539400-mRNA-1
chr4_1 exon 20306522 20306678 20306522 ID=Msa0539400-mRNA-1:exon:5819;Parent=Msa0539400-mRNA-1
chr4_1 five_prime_UTR 20298268 20298402 20298268 ID=Msa0539400-mRNA-1:five_prime_utr;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20298403 20298832 20298403 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20300287 20300339 20300287 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20300526 20300618 20300526 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20301283 20301506 20301283 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20302026 20302092 20302026 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20305049 20305159 20305049 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 CDS 20305969 20305995 20305969 ID=Msa0539400-mRNA-1:cds;Parent=Msa0539400-mRNA-1
chr4_1 three_prime_UTR 20305996 20306495 20305996 ID=Msa0539400-mRNA-1:three_prime_utr;Parent=Msa0539400-mRNA-1
chr4_1 three_prime_UTR 20306522 20306678 20306522 ID=Msa0539400-mRNA-1:three_prime_utr;Parent=Msa0539400-mRNA-1
Gene Sequence

>Msa0539400

ATGCGCACTCTTTCATTTCCACCACCATGTCTATCATCTTCTTCATATCCTCTTCACACCAATAATAATAATCGATTATCCACTACTTTTTCTTCTTACAAATGTTTTCATTTCTTAACACCACATTCATCTCTCAAACAAACCAAAAAACAACCTAGTAGAATCAATAACACTGACCCATCTCGGTTAAAGCGTTTGTTTAATCCCAAAAGTGAAAATGATGATGATAAAAATGATGATGATAAGAATAAGAAGAAGAAAAGAGGTGAATCTGAGAAAGAAGAGGAAGAGGATGAAGGTGCTGCTTTGAAGGGTACCCTACTGGCTGGTGTTTTGCTTGTTGGTTTTGTTGGTGGTTTTGCTTCTGTTGGTTATATTTATAGAGAGCCTATTAATACTTTCTTGAATCAATTCTCTGGCTTCATTGAAGGTTATGGTTCAGCTGGATATGCATTGTTTGTAGCTGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCCTTAACCATGTCAGCCGGACTTCTCTTTGGATCCCTTACCGGCACTATCATAGTCTCTATCAGTGGAACAGTGGCGGCTAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGCGAGCGTATTCTAAAATTAGTGGAAGGGAATAAGAAGTTTCTTGCTATTGACAAAGCAATTGGAGAAAATGGCTTCAAGGTTGTTACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCACTGGGGAATTATTTATATGGGTTGACATCTGTTAAGTTTCTTCCATATGTATTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCTGGTGCTTTTGGAAGAGCAATAATACAAGAAGAATCTGAACTTAGTTCACTTGGAGGAAACAATCAGCTGCTGACGCTTGGGCTTGGACTCTTGGCCACTGCATTAGCTGCTACATATGTCACGAAGCTTGCAAAGGACGCTGTTAAAGACATCGACGACTAG

Protein sequence

>Msa0539400

MRTLSFPPPCLSSSSYPLHTNNNNRLSTTFSSYKCFHFLTPHSSLKQTKKQPSRINNTDPSRLKRLFNPKSENDDDKNDDDKNKKKKRGESEKEEEEDEGAALKGTLLAGVLLVGFVGGFASVGYIYREPINTFLNQFSGFIEGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELSSLGGNNQLLTLGLGLLATALAATYVTKLAKDAVKDIDD*