Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013390 | XP_024633463.1 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 4.73e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013390 | sp|F1QVR8|METL5_DANRE | 54.067 | 209 | 91 | 5 | 1 | 206 | 1 | 207 | 1.14e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013390 | Msa0062300 | 0.802973 | 4.351133e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013390 | MtrunA17_Chr1g0162731 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 4.35e-160 | 440 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013390 | AT4G28830.4 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 2.82e-115 | 327 |
| Msa0013390 | AT4G28830.3 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 2.82e-115 | 327 |
| Msa0013390 | AT4G28830.1 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 2.82e-115 | 327 |
| Msa0013390 | AT4G28830.2 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 1.39e-79 | 235 |
Find 43 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGAAATTTGTACAATTT+TGG | 0.138898 | 1_1:+20697819 | None:intergenic |
| CCCATTTGGAACTCGGAAAA+AGG | 0.184618 | 1_1:-20698819 | Msa0013390:CDS |
| AAGATAGTTTAATTGAATTA+AGG | 0.239520 | 1_1:+20704672 | None:intergenic |
| TCATGAGCACTTGTTAGATT+TGG | 0.240313 | 1_1:-20697656 | Msa0013390:three_prime_UTR |
| GATGCTATTTCAAGAGATTC+TGG | 0.249680 | 1_1:+20700017 | None:intergenic |
| CAATCTTTGGTTGAGGGAAT+TGG | 0.296999 | 1_1:+20704581 | None:intergenic |
| CATGAGCACTTGTTAGATTT+GGG | 0.300667 | 1_1:-20697655 | Msa0013390:three_prime_UTR |
| GGATGTGGTTGTGGTACTTT+AGG | 0.308636 | 1_1:-20702799 | Msa0013390:CDS |
| TATTGTTCAAGCTCAATCTT+TGG | 0.321728 | 1_1:+20704568 | None:intergenic |
| CCTCTGCTTTGATGACTTGC+AGG | 0.321926 | 1_1:+20697753 | None:intergenic |
| TGAACTGTGAATCTCCTTAG+AGG | 0.361502 | 1_1:-20697500 | Msa0013390:three_prime_UTR |
| TATCTTCTTCACCATTTCTC+TGG | 0.361958 | 1_1:-20704655 | Msa0013390:five_prime_UTR |
| CACATCATCAAAAGAATTCT+CGG | 0.368740 | 1_1:+20702846 | None:intergenic |
| ATAATAACTGTATCAACAAC+TGG | 0.412753 | 1_1:+20698848 | None:intergenic |
| GGCAAGAATTAAAATAGTTA+AGG | 0.419923 | 1_1:-20697479 | Msa0013390:three_prime_UTR |
| AAACTTACTCTGCACTCAAA+AGG | 0.421281 | 1_1:+20702764 | None:intergenic |
| CAAGCTCAATCTTTGGTTGA+GGG | 0.432977 | 1_1:+20704575 | None:intergenic |
| TAGATATTGCTGTTGATCTC+TGG | 0.436044 | 1_1:-20697785 | Msa0013390:CDS |
| TGTGAAACGTGCAGCCTTGA+GGG | 0.451323 | 1_1:-20698041 | Msa0013390:CDS |
| GCTGACTTTGGATGTGGTTG+TGG | 0.455958 | 1_1:-20702808 | Msa0013390:CDS |
| GTTGAGCACAATTATAAAAG+AGG | 0.477951 | 1_1:+20697627 | None:intergenic |
| CTAATATCATGGACTTGAGA+TGG | 0.504121 | 1_1:-20699678 | Msa0013390:CDS |
| GAGCTTGAACAATACCCAAC+TGG | 0.504459 | 1_1:-20704559 | Msa0013390:CDS |
| ATGAAACTGAAAGAGTTAGA+AGG | 0.514164 | 1_1:-20704622 | Msa0013390:CDS |
| AACTTACTCTGCACTCAAAA+GGG | 0.515377 | 1_1:+20702765 | None:intergenic |
| CAAATTTCATAAGAAGAAAG+AGG | 0.523581 | 1_1:-20697808 | Msa0013390:CDS |
| ACTAAAACTGCAGCTGGACA+TGG | 0.529183 | 1_1:-20699713 | Msa0013390:intron |
| TCAAGCTCAATCTTTGGTTG+AGG | 0.533527 | 1_1:+20704574 | None:intergenic |
| AACAAAGTAGTAGCTGACTT+TGG | 0.540597 | 1_1:-20702820 | Msa0013390:CDS |
| AAGCGATGTGAGGTCCAGTT+GGG | 0.548808 | 1_1:+20704545 | None:intergenic |
| GAAGCGATGTGAGGTCCAGT+TGG | 0.553995 | 1_1:+20704544 | None:intergenic |
| ATGTGAAACGTGCAGCCTTG+AGG | 0.575984 | 1_1:-20698042 | Msa0013390:CDS |
| TCTTAATGCTGAGGAACTTG+AGG | 0.577969 | 1_1:-20699994 | Msa0013390:intron |
| GTAGTAGCTGACTTTGGATG+TGG | 0.589321 | 1_1:-20702814 | Msa0013390:CDS |
| ATCATGGACTTGAGATGGAG+AGG | 0.614395 | 1_1:-20699673 | Msa0013390:intron |
| AAAGAGTTAGAAGGTCACCT+TGG | 0.624787 | 1_1:-20704613 | Msa0013390:CDS |
| AATAGCATCTCTTAATGCTG+AGG | 0.626732 | 1_1:-20700003 | Msa0013390:CDS |
| TCTAGCATTGAAATCCCTCA+AGG | 0.636852 | 1_1:+20698027 | None:intergenic |
| CCTGCAAGTCATCAAAGCAG+AGG | 0.660496 | 1_1:-20697753 | Msa0013390:CDS |
| TAGTGTTGACAGAATTTGTG+TGG | 0.665194 | 1_1:-20697726 | Msa0013390:three_prime_UTR |
| AGCATACGAGAAGCGATGTG+AGG | 0.677746 | 1_1:+20704535 | None:intergenic |
| GGAATTGGTCGAGAGAACCA+AGG | 0.704393 | 1_1:+20704596 | None:intergenic |
| AAGTGCTGAAGTTATCTGTG+AGG | 0.734323 | 1_1:-20698005 | Msa0013390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAGTGAAAAAAA+GGG | + | chr1_1:20697622-20697641 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAGTGAAAAAA+AGG | + | chr1_1:20697623-20697642 | None:intergenic | 10.0% |
| !! | GAATAATCATATATTATTAA+AGG | + | chr1_1:20697751-20697770 | None:intergenic | 10.0% |
| !!! | ATTATTTTTAAACTTCTTTA+TGG | + | chr1_1:20700404-20700423 | None:intergenic | 10.0% |
| !!! | GAAATAAAAGTTTATATTTT+GGG | + | chr1_1:20700469-20700488 | None:intergenic | 10.0% |
| !!! | AGAAATAAAAGTTTATATTT+TGG | + | chr1_1:20700470-20700489 | None:intergenic | 10.0% |
| !! | AAAATGATATTACATATAAA+TGG | - | chr1_1:20701214-20701233 | Msa0013390:intron | 10.0% |
| !!! | ATTATAATTTATTTTTTCAG+GGG | - | chr1_1:20701532-20701551 | Msa0013390:intron | 10.0% |
| !!! | ATTTTATAGTACTTTGTTAA+TGG | - | chr1_1:20697704-20697723 | Msa0013390:three_prime_UTR | 15.0% |
| !!! | TTTTATAGTACTTTGTTAAT+GGG | - | chr1_1:20697705-20697724 | Msa0013390:three_prime_UTR | 15.0% |
| !!! | ATGATTATTCTTTTTCTTTT+TGG | - | chr1_1:20697761-20697780 | Msa0013390:CDS | 15.0% |
| !!! | AAAATTAATTACACTTGTTA+TGG | + | chr1_1:20698598-20698617 | None:intergenic | 15.0% |
| !!! | ATAACAAGTGTAATTAATTT+TGG | - | chr1_1:20698597-20698616 | Msa0013390:intron | 15.0% |
| !!! | TATTTTATACAATCTACAAA+AGG | - | chr1_1:20699500-20699519 | Msa0013390:intron | 15.0% |
| !! | AGAACAGTTTAATAATTTAT+TGG | - | chr1_1:20700506-20700525 | Msa0013390:intron | 15.0% |
| !! | GAACAGTTTAATAATTTATT+GGG | - | chr1_1:20700507-20700526 | Msa0013390:intron | 15.0% |
| !! | AACAGTTTAATAATTTATTG+GGG | - | chr1_1:20700508-20700527 | Msa0013390:intron | 15.0% |
| !!! | ATTGTTAATTTTTTTACTAG+TGG | - | chr1_1:20700939-20700958 | Msa0013390:intron | 15.0% |
| !! | GCAATATAAATAAGAAAAAT+AGG | + | chr1_1:20701089-20701108 | None:intergenic | 15.0% |
| !! | TAAAAAAATATTGTCAAAGT+AGG | - | chr1_1:20701588-20701607 | Msa0013390:intron | 15.0% |
| !!! | AACTAGTATTTTATATGATA+TGG | + | chr1_1:20702623-20702642 | None:intergenic | 15.0% |
| !! | AAATATTAACTCTTGAAAAA+TGG | + | chr1_1:20702673-20702692 | None:intergenic | 15.0% |
| !!! | AAATAACATGCATTTTTTAT+AGG | + | chr1_1:20703121-20703140 | None:intergenic | 15.0% |
| !!! | TTCCATATTTTTTTTTCATT+AGG | - | chr1_1:20703419-20703438 | Msa0013390:intron | 15.0% |
| !! | AACCTAATGAAAAAAAAATA+TGG | + | chr1_1:20703424-20703443 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTATTTCAATTAA+TGG | - | chr1_1:20703604-20703623 | Msa0013390:intron | 15.0% |
| !!! | TTTTATAAATCTGTAACAAA+CGG | + | chr1_1:20703740-20703759 | None:intergenic | 15.0% |
| !!! | GCTTATATATTTTACTTTTT+AGG | + | chr1_1:20703772-20703791 | None:intergenic | 15.0% |
| !!! | TTTTCAAGTGATTTATATTA+TGG | - | chr1_1:20703856-20703875 | Msa0013390:intron | 15.0% |
| !!! | TTATGAAATTTGTACAATTT+TGG | + | chr1_1:20704294-20704313 | None:intergenic | 15.0% |
| !! | TATAAAATGAAGATGGAATA+AGG | + | chr1_1:20697692-20697711 | None:intergenic | 20.0% |
| !!! | AAAGTACTATAAAATGAAGA+TGG | + | chr1_1:20697699-20697718 | None:intergenic | 20.0% |
| !! | TAAAACTAACTAACACAATA+GGG | - | chr1_1:20698079-20698098 | Msa0013390:intron | 20.0% |
| !! | TCATAGATCAATATAAACAA+GGG | + | chr1_1:20698165-20698184 | None:intergenic | 20.0% |
| !! | TTCATAGATCAATATAAACA+AGG | + | chr1_1:20698166-20698185 | None:intergenic | 20.0% |
| !! | GATGTCATATATTTAATCTA+TGG | + | chr1_1:20698326-20698345 | None:intergenic | 20.0% |
| !! | AAACATTTATACATTCACAT+GGG | + | chr1_1:20698831-20698850 | None:intergenic | 20.0% |
| !! | ATTTACATAGCATAAAGTAA+AGG | + | chr1_1:20699427-20699446 | None:intergenic | 20.0% |
| !!! | ACTATAATGACATTGATTAT+AGG | - | chr1_1:20699457-20699476 | Msa0013390:intron | 20.0% |
| !!! | AGTGTAAGTATTTTTGAAAT+GGG | + | chr1_1:20700317-20700336 | None:intergenic | 20.0% |
| !!! | AAGTGTAAGTATTTTTGAAA+TGG | + | chr1_1:20700318-20700337 | None:intergenic | 20.0% |
| !! | TTGTGTATATAACAACATAT+TGG | + | chr1_1:20700909-20700928 | None:intergenic | 20.0% |
| !!! | TCTTATTTTATATAACGTCA+AGG | - | chr1_1:20701280-20701299 | Msa0013390:intron | 20.0% |
| !!! | ATATAAGTTGTTGTTTGATT+TGG | + | chr1_1:20701509-20701528 | None:intergenic | 20.0% |
| !!! | AGCAATTGTTATTTTTATGT+TGG | - | chr1_1:20702334-20702353 | Msa0013390:intron | 20.0% |
| !!! | TTGAAGCATAACTAATATTT+TGG | - | chr1_1:20702523-20702542 | Msa0013390:intron | 20.0% |
| !!! | TGAAGCATAACTAATATTTT+GGG | - | chr1_1:20702524-20702543 | Msa0013390:intron | 20.0% |
| !!! | TATAAAATACTAGTTGATGA+TGG | - | chr1_1:20702628-20702647 | Msa0013390:intron | 20.0% |
| !!! | ATAAAATACTAGTTGATGAT+GGG | - | chr1_1:20702629-20702648 | Msa0013390:intron | 20.0% |
| !! | AATGGAAGAAAAGAAAATTT+AGG | + | chr1_1:20702655-20702674 | None:intergenic | 20.0% |
| !!! | AAAAAATGCATGTTATTTAC+TGG | - | chr1_1:20703123-20703142 | Msa0013390:intron | 20.0% |
| !! | ATGGTATTGTTATATATAAG+GGG | + | chr1_1:20704023-20704042 | None:intergenic | 20.0% |
| !! | CATGGTATTGTTATATATAA+GGG | + | chr1_1:20704024-20704043 | None:intergenic | 20.0% |
| !! | CTTATATATAACAATACCAT+GGG | - | chr1_1:20704023-20704042 | Msa0013390:intron | 20.0% |
| !! | ATCATATAAAAATTAACCCA+TGG | + | chr1_1:20704042-20704061 | None:intergenic | 20.0% |
| !!! | TCTGATATTTTTGTATGATT+TGG | - | chr1_1:20704250-20704269 | Msa0013390:intron | 20.0% |
| !!! | TTGTAAGAGTTTTGTAAAAA+AGG | - | chr1_1:20704565-20704584 | Msa0013390:CDS | 20.0% |
| !! | TTTGTGCTTTGATAATCATA+TGG | - | chr1_1:20698006-20698025 | Msa0013390:CDS | 25.0% |
| ! | CTAAAACTAACTAACACAAT+AGG | - | chr1_1:20698078-20698097 | Msa0013390:intron | 25.0% |
| !!! | TTCACATCAGTTTTAATTCA+AGG | - | chr1_1:20698120-20698139 | Msa0013390:intron | 25.0% |
| ! | GATTAAATATATGACATCCT+AGG | - | chr1_1:20698328-20698347 | Msa0013390:intron | 25.0% |
| ! | GGAAATATTCTTTCAAATCA+GGG | + | chr1_1:20698491-20698510 | None:intergenic | 25.0% |
| ! | AGGAAATATTCTTTCAAATC+AGG | + | chr1_1:20698492-20698511 | None:intergenic | 25.0% |
| !!! | TTAATTTTGGTACGTAGAAA+TGG | - | chr1_1:20698610-20698629 | Msa0013390:intron | 25.0% |
| ! | GAAACATTTATACATTCACA+TGG | + | chr1_1:20698832-20698851 | None:intergenic | 25.0% |
| ! | ATTTACTGGAAAAAATGTTG+CGG | + | chr1_1:20698854-20698873 | None:intergenic | 25.0% |
| ! | ATGAAGTTTGAATACTTACT+AGG | - | chr1_1:20698917-20698936 | Msa0013390:intron | 25.0% |
| ! | ATAAAATGAAAACCTTCCAT+AGG | + | chr1_1:20699054-20699073 | None:intergenic | 25.0% |
| !! | TATGGAAGGTTTTCATTTTA+TGG | - | chr1_1:20699053-20699072 | Msa0013390:intron | 25.0% |
| !! | TTCATTTTATGGTTGAGATT+AGG | - | chr1_1:20699064-20699083 | Msa0013390:intron | 25.0% |
| !! | TCATTTTATGGTTGAGATTA+GGG | - | chr1_1:20699065-20699084 | Msa0013390:intron | 25.0% |
| ! | ATTGTAGAAAATCAATCCAA+TGG | - | chr1_1:20699110-20699129 | Msa0013390:intron | 25.0% |
| ! | ATTTGCAAATAACAAGCTTA+TGG | - | chr1_1:20699150-20699169 | Msa0013390:intron | 25.0% |
| !!! | ACAATTGATTTGAGATCTAT+TGG | - | chr1_1:20699576-20699595 | Msa0013390:intron | 25.0% |
| ! | CGATGATGTAGATTATTTAA+AGG | + | chr1_1:20699627-20699646 | None:intergenic | 25.0% |
| !!! | ATCATCGATTTGAAAATAGA+CGG | - | chr1_1:20699640-20699659 | Msa0013390:intron | 25.0% |
| !! | TTGAACTTGGTATTTGATTT+AGG | + | chr1_1:20700032-20700051 | None:intergenic | 25.0% |
| ! | TAAATCAAATACCAAGTTCA+AGG | - | chr1_1:20700031-20700050 | Msa0013390:CDS | 25.0% |
| !! | TTGTAAACTCATGATTTTCT+AGG | - | chr1_1:20700220-20700239 | Msa0013390:intron | 25.0% |
| !!! | GTGTAAGTATTTTTGAAATG+GGG | + | chr1_1:20700316-20700335 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGGTATCAGAA+TGG | + | chr1_1:20700458-20700477 | None:intergenic | 25.0% |
| !! | ATATAACAACATATTGGCTA+AGG | + | chr1_1:20700903-20700922 | None:intergenic | 25.0% |
| ! | ACTTGATTGAGTAATAAAAC+TGG | + | chr1_1:20700987-20701006 | None:intergenic | 25.0% |
| !!! | TGGTAATGTTTTTTTACTAG+TGG | - | chr1_1:20701127-20701146 | Msa0013390:intron | 25.0% |
| !! | ACAAAAAAGAGCATACATAT+AGG | + | chr1_1:20701806-20701825 | None:intergenic | 25.0% |
| !! | TTGAACTTGGTATTTGATTT+AGG | + | chr1_1:20700032-20700051 | None:intergenic | 25.0% |
| ! | TAAATCAAATACCAAGTTCA+AGG | - | chr1_1:20700031-20700050 | Msa0013390:CDS | 25.0% |
| ! | TAAAATATTACTCGATTGAG+AGG | + | chr1_1:20702005-20702024 | None:intergenic | 25.0% |
| ! | TGATTGTATCATACTATTGA+AGG | + | chr1_1:20702484-20702503 | None:intergenic | 25.0% |
| !! | ATAAATTCTGACCTTATTTC+TGG | - | chr1_1:20702551-20702570 | Msa0013390:intron | 25.0% |
| !! | TGTTTTCTATGTATCAAACT+TGG | - | chr1_1:20702717-20702736 | Msa0013390:intron | 25.0% |
| ! | ACAACAACAATATGAAATGA+AGG | - | chr1_1:20702875-20702894 | Msa0013390:intron | 25.0% |
| ! | TTCTGAATTGTATTGTATGA+AGG | - | chr1_1:20703046-20703065 | Msa0013390:intron | 25.0% |
| !! | TTTTTATAGGCAAATGTTAG+TGG | + | chr1_1:20703108-20703127 | None:intergenic | 25.0% |
| ! | ATAATAACTGTATCAACAAC+TGG | + | chr1_1:20703265-20703284 | None:intergenic | 25.0% |
| !!! | TTGTTACAGTTTTTTTTCTG+TGG | - | chr1_1:20703658-20703677 | Msa0013390:intron | 25.0% |
| ! | TGGTATTGTTATATATAAGG+GGG | + | chr1_1:20704022-20704041 | None:intergenic | 25.0% |
| ! | CCATGGTATTGTTATATATA+AGG | + | chr1_1:20704025-20704044 | None:intergenic | 25.0% |
| ! | CCTTATATATAACAATACCA+TGG | - | chr1_1:20704022-20704041 | Msa0013390:intron | 25.0% |
| ! | CAAATTTCATAAGAAGAAAG+AGG | - | chr1_1:20704302-20704321 | Msa0013390:intron | 25.0% |
| !!! | TATTTTAATTCTTGCCTCTA+AGG | + | chr1_1:20704627-20704646 | None:intergenic | 25.0% |
| ! | GGCAAGAATTAAAATAGTTA+AGG | - | chr1_1:20704631-20704650 | Msa0013390:exon | 25.0% |
| !!! | TCGATTTTTTTCCAGAGAAA+TGG | + | chr1_1:20697469-20697488 | None:intergenic | 30.0% |
| ATGAAACTGAAAGAGTTAGA+AGG | - | chr1_1:20697488-20697507 | Msa0013390:three_prime_UTR | 30.0% | |
| TATTGTTCAAGCTCAATCTT+TGG | + | chr1_1:20697545-20697564 | None:intergenic | 30.0% | |
| ! | AAAGTTTAAAGGGGCATAAA+GGG | + | chr1_1:20697646-20697665 | None:intergenic | 30.0% |
| ! | TAAAGTTTAAAGGGGCATAA+AGG | + | chr1_1:20697647-20697666 | None:intergenic | 30.0% |
| TTGAGCAGTAAAGTTTAAAG+GGG | + | chr1_1:20697655-20697674 | None:intergenic | 30.0% | |
| CTTGAGCAGTAAAGTTTAAA+GGG | + | chr1_1:20697656-20697675 | None:intergenic | 30.0% | |
| ACTTGAGCAGTAAAGTTTAA+AGG | + | chr1_1:20697657-20697676 | None:intergenic | 30.0% | |
| !!! | TCTTTTTGGTGTTAGAAATG+CGG | - | chr1_1:20697775-20697794 | Msa0013390:CDS | 30.0% |
| !!! | TGTTAGTTAGTTTTAGTGTG+CGG | + | chr1_1:20698074-20698093 | None:intergenic | 30.0% |
| TTGAAATTGCAGATGTTAGT+AGG | - | chr1_1:20698289-20698308 | Msa0013390:intron | 30.0% | |
| ! | TATATGACATCCTAGGTTTT+TGG | - | chr1_1:20698335-20698354 | Msa0013390:intron | 30.0% |
| GAGATATCATATGGCAAAAA+TGG | + | chr1_1:20698657-20698676 | None:intergenic | 30.0% | |
| TGCTATATACATAGTATGAC+AGG | - | chr1_1:20698697-20698716 | Msa0013390:intron | 30.0% | |
| ATGTTCTTGCACAAATTTAC+TGG | + | chr1_1:20698868-20698887 | None:intergenic | 30.0% | |
| AATACTAACTATGTAGTCAG+TGG | - | chr1_1:20698960-20698979 | Msa0013390:intron | 30.0% | |
| TTTGTGCTCTAATAATCCTA+TGG | - | chr1_1:20699035-20699054 | Msa0013390:intron | 30.0% | |
| CACATCATCAAAAGAATTCT+CGG | + | chr1_1:20699267-20699286 | None:intergenic | 30.0% | |
| TAAGTTTCAGCTTTCTTTCT+TGG | - | chr1_1:20699362-20699381 | Msa0013390:intron | 30.0% | |
| AACGTGTATTAGTTAATGCA+GGG | + | chr1_1:20699535-20699554 | None:intergenic | 30.0% | |
| AAACGTGTATTAGTTAATGC+AGG | + | chr1_1:20699536-20699555 | None:intergenic | 30.0% | |
| CAGTGTATAGTTCAGAAATT+AGG | + | chr1_1:20699748-20699767 | None:intergenic | 30.0% | |
| TATACACTGTTTCACATACA+TGG | - | chr1_1:20699759-20699778 | Msa0013390:intron | 30.0% | |
| ATGCTTTATAAACACTACAC+AGG | + | chr1_1:20699929-20699948 | None:intergenic | 30.0% | |
| TGTGTAGTGTTTATAAAGCA+TGG | - | chr1_1:20699928-20699947 | Msa0013390:intron | 30.0% | |
| ACTCAATATAAAATCCGAGA+CGG | - | chr1_1:20699998-20700017 | Msa0013390:CDS | 30.0% | |
| ! | ACTTGGTATTTGATTTAGGA+AGG | + | chr1_1:20700028-20700047 | None:intergenic | 30.0% |
| ! | TGAATTTTCATCCTTGAACT+TGG | + | chr1_1:20700045-20700064 | None:intergenic | 30.0% |
| GAACAATATGAAAGAAAGTG+AGG | - | chr1_1:20700530-20700549 | Msa0013390:intron | 30.0% | |
| AAAGTGAGGTTAAAGTGATT+TGG | - | chr1_1:20700544-20700563 | Msa0013390:intron | 30.0% | |
| TCGAAGGTTTATCCTTTAAT+AGG | + | chr1_1:20700657-20700676 | None:intergenic | 30.0% | |
| AAGTTCGAGAAAATTATCGA+AGG | + | chr1_1:20700673-20700692 | None:intergenic | 30.0% | |
| !! | AGTAATTTGCTTGTTGTGTT+CGG | - | chr1_1:20700705-20700724 | Msa0013390:intron | 30.0% |
| !!! | TCAAGCTTTAGAAGTTTTGT+TGG | - | chr1_1:20700867-20700886 | Msa0013390:intron | 30.0% |
| GCACATAAGTTATATCAAGT+TGG | - | chr1_1:20701107-20701126 | Msa0013390:intron | 30.0% | |
| AATAAGAAAAGTAGTCAGAC+TGG | - | chr1_1:20701667-20701686 | Msa0013390:intron | 30.0% | |
| ATAGTATACTAGCATGGAAA+TGG | - | chr1_1:20701769-20701788 | Msa0013390:intron | 30.0% | |
| TAGTATACTAGCATGGAAAT+GGG | - | chr1_1:20701770-20701789 | Msa0013390:intron | 30.0% | |
| ACCCAATATAAAATCTGAGA+CGG | - | chr1_1:20701883-20701902 | Msa0013390:intron | 30.0% | |
| ! | ACCGTCTCAGATTTTATATT+GGG | + | chr1_1:20701887-20701906 | None:intergenic | 30.0% |
| ! | AACCGTCTCAGATTTTATAT+TGG | + | chr1_1:20701888-20701907 | None:intergenic | 30.0% |
| ! | ACTTGGTATTTGATTTAGGA+AGG | + | chr1_1:20700028-20700047 | None:intergenic | 30.0% |
| ! | TGAATTTTCATCCTTGAACT+TGG | + | chr1_1:20700045-20700064 | None:intergenic | 30.0% |
| TTGCTCGTTATATTGATGAA+TGG | - | chr1_1:20702149-20702168 | Msa0013390:intron | 30.0% | |
| TATTGATGAATGGAAGTCTT+AGG | - | chr1_1:20702159-20702178 | Msa0013390:intron | 30.0% | |
| !! | GACCTTATTTCTGGAAATAT+TGG | - | chr1_1:20702560-20702579 | Msa0013390:intron | 30.0% |
| CTCCAATATTTCCAGAAATA+AGG | + | chr1_1:20702565-20702584 | None:intergenic | 30.0% | |
| TTGCTTTCATTCATTGTGTT+TGG | - | chr1_1:20702787-20702806 | Msa0013390:CDS | 30.0% | |
| TGCTTTCATTCATTGTGTTT+GGG | - | chr1_1:20702788-20702807 | Msa0013390:CDS | 30.0% | |
| AATATGAAATGAAGGCTTAC+TGG | - | chr1_1:20702883-20702902 | Msa0013390:intron | 30.0% | |
| ! | GTGCATATTTTGCTCTTAAT+TGG | - | chr1_1:20702969-20702988 | Msa0013390:intron | 30.0% |
| TGAATTGTATTGTATGAAGG+AGG | - | chr1_1:20703049-20703068 | Msa0013390:intron | 30.0% | |
| ! | TTTTCTTTCTGTTGCTATGA+AGG | - | chr1_1:20703327-20703346 | Msa0013390:intron | 30.0% |
| ! | AAACAAAACATATTGGTTGG+TGG | + | chr1_1:20703572-20703591 | None:intergenic | 30.0% |
| GGAAAACAAAACATATTGGT+TGG | + | chr1_1:20703575-20703594 | None:intergenic | 30.0% | |
| GTGAGGAAAACAAAACATAT+TGG | + | chr1_1:20703579-20703598 | None:intergenic | 30.0% | |
| AATAAACAAGAACATCAGTG+AGG | + | chr1_1:20703596-20703615 | None:intergenic | 30.0% | |
| TGTTGAGCTACATAGATTTA+GGG | + | chr1_1:20703985-20704004 | None:intergenic | 30.0% | |
| GTTGAGCACAATTATAAAAG+AGG | + | chr1_1:20704486-20704505 | None:intergenic | 30.0% | |
| TATCTTCTTCACCATTTCTC+TGG | - | chr1_1:20697455-20697474 | Msa0013390:three_prime_UTR | 35.0% | |
| !!! | CTTTTTGGTGTTAGAAATGC+GGG | - | chr1_1:20697776-20697795 | Msa0013390:CDS | 35.0% |
| ATGACAAAGTTAGAGAGAGT+TGG | - | chr1_1:20697844-20697863 | Msa0013390:intron | 35.0% | |
| TGACAAAGTTAGAGAGAGTT+GGG | - | chr1_1:20697845-20697864 | Msa0013390:intron | 35.0% | |
| ! | GAACACTATGGTGGAAAATT+TGG | - | chr1_1:20697883-20697902 | Msa0013390:intron | 35.0% |
| TGGTTTATGACAGAACACTA+TGG | - | chr1_1:20697903-20697922 | Msa0013390:intron | 35.0% | |
| ! | CAATGGTAATGTAATGCAAC+AGG | + | chr1_1:20698043-20698062 | None:intergenic | 35.0% |
| GCATTACATTACCATTGAGA+AGG | - | chr1_1:20698046-20698065 | Msa0013390:CDS | 35.0% | |
| TAACTAACACAATAGGGAGT+TGG | - | chr1_1:20698085-20698104 | Msa0013390:intron | 35.0% | |
| !! | TTTTGAAGATTTTCTCGCAC+AGG | - | chr1_1:20698228-20698247 | Msa0013390:intron | 35.0% |
| TTGATGTTTGCCAAAAACCT+AGG | + | chr1_1:20698348-20698367 | None:intergenic | 35.0% | |
| GGAGGATATATATCTCAAGA+GGG | + | chr1_1:20698413-20698432 | None:intergenic | 35.0% | |
| AGGAGGATATATATCTCAAG+AGG | + | chr1_1:20698414-20698433 | None:intergenic | 35.0% | |
| GAGATATATATCCTCCTCTA+AGG | - | chr1_1:20698417-20698436 | Msa0013390:intron | 35.0% | |
| AATCAACTTATCCTTAGAGG+AGG | + | chr1_1:20698431-20698450 | None:intergenic | 35.0% | |
| GTGAATCAACTTATCCTTAG+AGG | + | chr1_1:20698434-20698453 | None:intergenic | 35.0% | |
| TATTCTTTCAAATCAGGGTG+CGG | + | chr1_1:20698486-20698505 | None:intergenic | 35.0% | |
| CCTCTCTTAGAGATATCATA+TGG | + | chr1_1:20698666-20698685 | None:intergenic | 35.0% | |
| ! | CCATATGATATCTCTAAGAG+AGG | - | chr1_1:20698663-20698682 | Msa0013390:CDS | 35.0% |
| CAAGATCATTCCTTGAAAGA+AGG | + | chr1_1:20698741-20698760 | None:intergenic | 35.0% | |
| GATCTTGATCTCTTCTAAGT+TGG | - | chr1_1:20698754-20698773 | Msa0013390:intron | 35.0% | |
| AGTCATTAGTTCCTAACTGT+GGG | + | chr1_1:20698795-20698814 | None:intergenic | 35.0% | |
| AAGTCATTAGTTCCTAACTG+TGG | + | chr1_1:20698796-20698815 | None:intergenic | 35.0% | |
| ACAGTTAGGAACTAATGACT+TGG | - | chr1_1:20698795-20698814 | Msa0013390:CDS | 35.0% | |
| ACTTCATCTCTTTCAGTTTG+TGG | + | chr1_1:20698904-20698923 | None:intergenic | 35.0% | |
| TGCTCTAATAATCCTATGGA+AGG | - | chr1_1:20699039-20699058 | Msa0013390:intron | 35.0% | |
| ! | TTTTATGGTTGAGATTAGGG+AGG | - | chr1_1:20699068-20699087 | Msa0013390:intron | 35.0% |
| TATTGTGATTCGTGTGAATC+AGG | - | chr1_1:20699241-20699260 | Msa0013390:intron | 35.0% | |
| ! | AACAAAGTAGTAGCTGACTT+TGG | - | chr1_1:20699290-20699309 | Msa0013390:intron | 35.0% |
| AACTTACTCTGCACTCAAAA+GGG | + | chr1_1:20699348-20699367 | None:intergenic | 35.0% | |
| AAACTTACTCTGCACTCAAA+AGG | + | chr1_1:20699349-20699368 | None:intergenic | 35.0% | |
| TTTCTCACACATCTAATGTG+CGG | - | chr1_1:20699677-20699696 | Msa0013390:CDS | 35.0% | |
| ! | GTTTCACATACATGGTTTGT+TGG | - | chr1_1:20699767-20699786 | Msa0013390:intron | 35.0% |
| TGGAAATTCTGCTTTCATTG+TGG | - | chr1_1:20699787-20699806 | Msa0013390:intron | 35.0% | |
| TCGAACACCTTTAATGTGTT+GGG | - | chr1_1:20699860-20699879 | Msa0013390:intron | 35.0% | |
| TTTCACACCCAACACATTAA+AGG | + | chr1_1:20699870-20699889 | None:intergenic | 35.0% | |
| TTAATGTGTTGGGTGTGAAA+AGG | - | chr1_1:20699870-20699889 | Msa0013390:intron | 35.0% | |
| TAATGTGTTGGGTGTGAAAA+GGG | - | chr1_1:20699871-20699890 | Msa0013390:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr1_1:20699978-20699997 | None:intergenic | 35.0% | |
| ! | GGTATTTGATTTAGGAAGGA+GGG | + | chr1_1:20700024-20700043 | None:intergenic | 35.0% |
| ! | TGGTATTTGATTTAGGAAGG+AGG | + | chr1_1:20700025-20700044 | None:intergenic | 35.0% |
| !!! | AGCGTCTGATTATTTTAGAG+AGG | + | chr1_1:20700342-20700361 | None:intergenic | 35.0% |
| GAAAATGCTGAGGATGTAAT+AGG | - | chr1_1:20700621-20700640 | Msa0013390:intron | 35.0% | |
| ! | GGTCTTATCTCTCCTATTAA+AGG | - | chr1_1:20700642-20700661 | Msa0013390:intron | 35.0% |
| ACACAACAAGCAAATTACTG+AGG | + | chr1_1:20700704-20700723 | None:intergenic | 35.0% | |
| TTAGCGATATCAATCACATG+TGG | - | chr1_1:20700739-20700758 | Msa0013390:intron | 35.0% | |
| ATAAACTGTAACGTGTACGT+AGG | + | chr1_1:20701387-20701406 | None:intergenic | 35.0% | |
| AGCGTTTAGACAGTTTAGAT+GGG | + | chr1_1:20701702-20701721 | None:intergenic | 35.0% | |
| TTGTTAAACTGCGACATGAA+CGG | - | chr1_1:20701739-20701758 | Msa0013390:intron | 35.0% | |
| ! | AAGAGCATACATATAGGCAA+GGG | + | chr1_1:20701800-20701819 | None:intergenic | 35.0% |
| ! | AAAGAGCATACATATAGGCA+AGG | + | chr1_1:20701801-20701820 | None:intergenic | 35.0% |
| ! | GGTATTTGATTTAGGAAGGA+GGG | + | chr1_1:20700024-20700043 | None:intergenic | 35.0% |
| ! | TGGTATTTGATTTAGGAAGG+AGG | + | chr1_1:20700025-20700044 | None:intergenic | 35.0% |
| !! | GATGCTATTTCAAGAGATTC+TGG | + | chr1_1:20702096-20702115 | None:intergenic | 35.0% |
| AATAGCATCTCTTAATGCTG+AGG | - | chr1_1:20702107-20702126 | Msa0013390:intron | 35.0% | |
| TCTTAGGTTTCTCTATAACC+AGG | - | chr1_1:20702175-20702194 | Msa0013390:intron | 35.0% | |
| TCTATAACCAGGTTTCTTGT+TGG | - | chr1_1:20702186-20702205 | Msa0013390:intron | 35.0% | |
| TATTCAACTAAAACTGCAGC+TGG | - | chr1_1:20702391-20702410 | Msa0013390:intron | 35.0% | |
| GGTTTATGTTTGAACTCTTG+TGG | - | chr1_1:20702738-20702757 | Msa0013390:intron | 35.0% | |
| AATGAAAGCAACGTAATCCT+AGG | + | chr1_1:20702778-20702797 | None:intergenic | 35.0% | |
| TTGGCTTCTAATTATGTCTC+CGG | - | chr1_1:20702988-20703007 | Msa0013390:intron | 35.0% | |
| TATACTCTCAAGTATGATCC+CGG | + | chr1_1:20703010-20703029 | None:intergenic | 35.0% | |
| ACTGGTATTCAGTGTATTAG+TGG | - | chr1_1:20703141-20703160 | Msa0013390:intron | 35.0% | |
| TGAACAAGTTCCTATGATCT+TGG | - | chr1_1:20703225-20703244 | Msa0013390:intron | 35.0% | |
| GTTATTATGAATCCCCCATT+TGG | - | chr1_1:20703277-20703296 | Msa0013390:intron | 35.0% | |
| CTGTTGAGCTACATAGATTT+AGG | + | chr1_1:20703986-20704005 | None:intergenic | 35.0% | |
| CTTACTACTACACAAAACAC+TGG | + | chr1_1:20704193-20704212 | None:intergenic | 35.0% | |
| ! | TTTGTATGATTTGGCAGCTT+CGG | - | chr1_1:20704259-20704278 | Msa0013390:intron | 35.0% |
| ! | TAGATATTGCTGTTGATCTC+TGG | - | chr1_1:20704325-20704344 | Msa0013390:intron | 35.0% |
| !! | TAGTGTTGACAGAATTTGTG+TGG | - | chr1_1:20704384-20704403 | Msa0013390:intron | 35.0% |
| ! | TCATGAGCACTTGTTAGATT+TGG | - | chr1_1:20704454-20704473 | Msa0013390:intron | 35.0% |
| ! | CATGAGCACTTGTTAGATTT+GGG | - | chr1_1:20704455-20704474 | Msa0013390:intron | 35.0% |
| AAAGAGTTAGAAGGTCACCT+TGG | - | chr1_1:20697497-20697516 | Msa0013390:three_prime_UTR | 40.0% | |
| CAATCTTTGGTTGAGGGAAT+TGG | + | chr1_1:20697532-20697551 | None:intergenic | 40.0% | |
| CAAGCTCAATCTTTGGTTGA+GGG | + | chr1_1:20697538-20697557 | None:intergenic | 40.0% | |
| TCAAGCTCAATCTTTGGTTG+AGG | + | chr1_1:20697539-20697558 | None:intergenic | 40.0% | |
| GTGGTAAGACTAGATGAGAT+AGG | - | chr1_1:20697814-20697833 | Msa0013390:CDS | 40.0% | |
| CACTGATAGTCAGAACACTA+TGG | - | chr1_1:20697871-20697890 | Msa0013390:intron | 40.0% | |
| TGATAGTCAGAACACTATGG+TGG | - | chr1_1:20697874-20697893 | Msa0013390:intron | 40.0% | |
| GCGGTTAGGGGTAATAATAA+TGG | + | chr1_1:20698467-20698486 | None:intergenic | 40.0% | |
| CTCAAACTGTCCTTCTTTCA+AGG | - | chr1_1:20698728-20698747 | Msa0013390:intron | 40.0% | |
| TAGCATTAGTTCCCACAGTT+AGG | - | chr1_1:20698781-20698800 | Msa0013390:intron | 40.0% | |
| ACTTACTAGGACCACTAACT+AGG | - | chr1_1:20698930-20698949 | Msa0013390:intron | 40.0% | |
| TATTGCGTGTTCCTAGTTAG+TGG | + | chr1_1:20698944-20698963 | None:intergenic | 40.0% | |
| GTAGTCAGTGGAGAAATTCT+AGG | - | chr1_1:20698972-20698991 | Msa0013390:intron | 40.0% | |
| ATAAACAGTCCAAACCAGTG+AGG | + | chr1_1:20699011-20699030 | None:intergenic | 40.0% | |
| TGAGATTAGGGAGGAAGATA+AGG | - | chr1_1:20699077-20699096 | Msa0013390:intron | 40.0% | |
| TTCAAGACAGCTTCTGCATA+CGG | + | chr1_1:20699712-20699731 | None:intergenic | 40.0% | |
| !! | CAACACATTAAAGGTGTTCG+AGG | + | chr1_1:20699861-20699880 | None:intergenic | 40.0% |
| CTCGAACACCTTTAATGTGT+TGG | - | chr1_1:20699859-20699878 | Msa0013390:intron | 40.0% | |
| ! | ACTCATGATTTTCTAGGCCA+AGG | - | chr1_1:20700226-20700245 | Msa0013390:intron | 40.0% |
| ! | CTCATGATTTTCTAGGCCAA+GGG | - | chr1_1:20700227-20700246 | Msa0013390:intron | 40.0% |
| ! | GTGAGGTTAAAGTGATTTGG+TGG | - | chr1_1:20700547-20700566 | Msa0013390:intron | 40.0% |
| ! | CTCAGCATTTTCGCAAACAA+TGG | + | chr1_1:20700613-20700632 | None:intergenic | 40.0% |
| CATTGTTTGCGAAAATGCTG+AGG | - | chr1_1:20700611-20700630 | Msa0013390:intron | 40.0% | |
| ATGTGGATCACTGATGTTCA+GGG | - | chr1_1:20700756-20700775 | Msa0013390:intron | 40.0% | |
| GATGTTCAGGGCTTGATTTA+TGG | - | chr1_1:20700768-20700787 | Msa0013390:intron | 40.0% | |
| !!! | CCTTGTTTTGTTTGCCTCAA+CGG | + | chr1_1:20700794-20700813 | None:intergenic | 40.0% |
| AACGTGTACGTAGGAACAAA+TGG | + | chr1_1:20701378-20701397 | None:intergenic | 40.0% | |
| ! | AAGTTGTGCATTGACATGTG+TGG | + | chr1_1:20701414-20701433 | None:intergenic | 40.0% |
| CAGCGTTTAGACAGTTTAGA+TGG | + | chr1_1:20701703-20701722 | None:intergenic | 40.0% | |
| CATCTAAACTGTCTAAACGC+TGG | - | chr1_1:20701701-20701720 | Msa0013390:intron | 40.0% | |
| ! | GGGAGTATAGTATACTAGCA+TGG | - | chr1_1:20701763-20701782 | Msa0013390:intron | 40.0% |
| !! | AAAACCGACTTGTAAGGTGA+GGG | + | chr1_1:20701848-20701867 | None:intergenic | 40.0% |
| !! | CCTTACAAAACCGACTTGTA+AGG | + | chr1_1:20701854-20701873 | None:intergenic | 40.0% |
| !! | CCTTACAAGTCGGTTTTGTA+AGG | - | chr1_1:20701851-20701870 | Msa0013390:intron | 40.0% |
| TCTTAATGCTGAGGAACTTG+AGG | - | chr1_1:20702116-20702135 | Msa0013390:intron | 40.0% | |
| ATAACCAGGTTTCTTGTTGG+AGG | - | chr1_1:20702189-20702208 | Msa0013390:intron | 40.0% | |
| ! | TTTTCCTCCAACAAGAAACC+TGG | + | chr1_1:20702196-20702215 | None:intergenic | 40.0% |
| TGGTTGTATAACACACACCT+AGG | - | chr1_1:20702758-20702777 | Msa0013390:intron | 40.0% | |
| ACATCCTTAAGAGCAAAGCA+AGG | + | chr1_1:20702951-20702970 | None:intergenic | 40.0% | |
| TGGCTTCTAATTATGTCTCC+GGG | - | chr1_1:20702989-20703008 | Msa0013390:intron | 40.0% | |
| !! | GGCAAAAGTACCAAGATCAT+AGG | + | chr1_1:20703238-20703257 | None:intergenic | 40.0% |
| ! | ATGATCTTGGTACTTTTGCC+AGG | - | chr1_1:20703238-20703257 | Msa0013390:intron | 40.0% |
| ! | TTTTTCCGAGTTCCAAATGG+GGG | + | chr1_1:20703292-20703311 | None:intergenic | 40.0% |
| ! | CTTTTTCCGAGTTCCAAATG+GGG | + | chr1_1:20703293-20703312 | None:intergenic | 40.0% |
| ! | CCTTTTTCCGAGTTCCAAAT+GGG | + | chr1_1:20703294-20703313 | None:intergenic | 40.0% |
| ! | CCATTTGGAACTCGGAAAAA+GGG | - | chr1_1:20703292-20703311 | Msa0013390:intron | 40.0% |
| !! | GTAAGCAATAGCATTGATGC+TGG | - | chr1_1:20703349-20703368 | Msa0013390:intron | 40.0% |
| !! | CAAAACATATTGGTTGGTGG+TGG | + | chr1_1:20703569-20703588 | None:intergenic | 40.0% |
| ! | GAGCTACATAGATTTAGGGT+AGG | + | chr1_1:20703981-20704000 | None:intergenic | 40.0% |
| ! | TCTAGCATTGAAATCCCTCA+AGG | + | chr1_1:20704086-20704105 | None:intergenic | 40.0% |
| !! | AAGTGCTGAAGTTATCTGTG+AGG | - | chr1_1:20704105-20704124 | Msa0013390:intron | 40.0% |
| ! | GTTTTGTGTAGTAGTAAGCG+TGG | - | chr1_1:20704195-20704214 | Msa0013390:intron | 40.0% |
| TGAACTGTGAATCTCCTTAG+AGG | - | chr1_1:20704610-20704629 | Msa0013390:CDS | 40.0% | |
| GAGCTTGAACAATACCCAAC+TGG | - | chr1_1:20697551-20697570 | Msa0013390:three_prime_UTR | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_1:20697952-20697971 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_1:20697953-20697972 | None:intergenic | 45.0% |
| TTCAAATCAGGGTGCGGTTA+GGG | + | chr1_1:20698480-20698499 | None:intergenic | 45.0% | |
| TTTCAAATCAGGGTGCGGTT+AGG | + | chr1_1:20698481-20698500 | None:intergenic | 45.0% | |
| GATGCGCGTATGCAAATTGA+AGG | + | chr1_1:20698512-20698531 | None:intergenic | 45.0% | |
| GATTAGGGAGGAAGATAAGG+TGG | - | chr1_1:20699080-20699099 | Msa0013390:intron | 45.0% | |
| AACACATGCTTGCACACCAT+TGG | + | chr1_1:20699129-20699148 | None:intergenic | 45.0% | |
| ! | GTAGTAGCTGACTTTGGATG+TGG | - | chr1_1:20699296-20699315 | Msa0013390:intron | 45.0% |
| GGATGTGGTTGTGGTACTTT+AGG | - | chr1_1:20699311-20699330 | Msa0013390:intron | 45.0% | |
| ACAGCTTCTGCATACGGATT+TGG | + | chr1_1:20699706-20699725 | None:intergenic | 45.0% | |
| ATTTAGTCCCACATTGCCGA+GGG | - | chr1_1:20699897-20699916 | Msa0013390:intron | 45.0% | |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | + | chr1_1:20699963-20699982 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1_1:20699969-20699988 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1_1:20699966-20699985 | Msa0013390:intron | 45.0% |
| GACTAGTGTTTGTCAACCCT+TGG | + | chr1_1:20700246-20700265 | None:intergenic | 45.0% | |
| CATGTGGATCACTGATGTTC+AGG | - | chr1_1:20700755-20700774 | Msa0013390:intron | 45.0% | |
| CCGTTGAGGCAAACAAAACA+AGG | - | chr1_1:20700791-20700810 | Msa0013390:intron | 45.0% | |
| TTAAACTGCGACATGAACGG+AGG | - | chr1_1:20701742-20701761 | Msa0013390:intron | 45.0% | |
| TAAACTGCGACATGAACGGA+GGG | - | chr1_1:20701743-20701762 | Msa0013390:intron | 45.0% | |
| !! | CAAAACCGACTTGTAAGGTG+AGG | + | chr1_1:20701849-20701868 | None:intergenic | 45.0% |
| ACTAAAACTGCAGCTGGACA+TGG | - | chr1_1:20702397-20702416 | Msa0013390:intron | 45.0% | |
| CTTAAGAGCAAAGCAAGGAG+AGG | + | chr1_1:20702946-20702965 | None:intergenic | 45.0% | |
| CTCTCCTTGCTTTGCTCTTA+AGG | - | chr1_1:20702944-20702963 | Msa0013390:intron | 45.0% | |
| ACTGTATCAACAACTGGACC+TGG | + | chr1_1:20703259-20703278 | None:intergenic | 45.0% | |
| ! | TGAATCCCCCATTTGGAACT+CGG | - | chr1_1:20703284-20703303 | Msa0013390:intron | 45.0% |
| ! | CCCATTTGGAACTCGGAAAA+AGG | - | chr1_1:20703291-20703310 | Msa0013390:intron | 45.0% |
| ! | CCCTTTTTCCGAGTTCCAAA+TGG | + | chr1_1:20703295-20703314 | None:intergenic | 45.0% |
| ! | TCGGAAAAAGGGTGCAGATT+TGG | - | chr1_1:20703303-20703322 | Msa0013390:intron | 45.0% |
| TAGTAAGCGTGGTGCAATTG+TGG | - | chr1_1:20704206-20704225 | Msa0013390:intron | 45.0% | |
| !! | CTATAATATTATATAAAAAT+TGG | - | chr1_1:20701012-20701031 | Msa0013390:intron | 5.0% |
| !!! | ATCATTTTATATAATATAAT+AGG | + | chr1_1:20701202-20701221 | None:intergenic | 5.0% |
| !!! | ATATTATAATTTATTTTTTC+AGG | - | chr1_1:20701530-20701549 | Msa0013390:intron | 5.0% |
| !!! | TATTATAATTTATTTTTTCA+GGG | - | chr1_1:20701531-20701550 | Msa0013390:intron | 5.0% |
| !!! | TAAATAAATAAATTACTTTT+AGG | - | chr1_1:20703705-20703724 | Msa0013390:intron | 5.0% |
| GGAATTGGTCGAGAGAACCA+AGG | + | chr1_1:20697517-20697536 | None:intergenic | 50.0% | |
| AAGCGATGTGAGGTCCAGTT+GGG | + | chr1_1:20697568-20697587 | None:intergenic | 50.0% | |
| AGCATACGAGAAGCGATGTG+AGG | + | chr1_1:20697578-20697597 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_1:20697948-20697967 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_1:20697954-20697973 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_1:20697951-20697970 | Msa0013390:intron | 50.0% | |
| TCAAATCAGGGTGCGGTTAG+GGG | + | chr1_1:20698479-20698498 | None:intergenic | 50.0% | |
| ! | AACTCTGCTCCTCACTGGTT+TGG | - | chr1_1:20698999-20699018 | Msa0013390:intron | 50.0% |
| GGGAGGAAGATAAGGTGGTT+AGG | - | chr1_1:20699085-20699104 | Msa0013390:intron | 50.0% | |
| ! | GCTGACTTTGGATGTGGTTG+TGG | - | chr1_1:20699302-20699321 | Msa0013390:intron | 50.0% |
| GTAACCCAAATGCCGCAGTT+AGG | + | chr1_1:20699827-20699846 | None:intergenic | 50.0% | |
| GGTGTTCGAGGCTGCAATAA+AGG | + | chr1_1:20699849-20699868 | None:intergenic | 50.0% | |
| TGTGTTGGGTGTGAAAAGGG+TGG | - | chr1_1:20699874-20699893 | Msa0013390:intron | 50.0% | |
| GATTTAGTCCCACATTGCCG+AGG | - | chr1_1:20699896-20699915 | Msa0013390:intron | 50.0% | |
| ACTACACAGGCCATATCCCT+CGG | + | chr1_1:20699916-20699935 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr1_1:20699964-20699983 | None:intergenic | 50.0% |
| GGCTTGATTTATGGCCGTTG+AGG | - | chr1_1:20700777-20700796 | Msa0013390:intron | 50.0% | |
| ACCCTTATACACGTGAGTCG+CGG | + | chr1_1:20703634-20703653 | None:intergenic | 50.0% | |
| ATGTGAAACGTGCAGCCTTG+AGG | - | chr1_1:20704068-20704087 | Msa0013390:intron | 50.0% | |
| TGTGAAACGTGCAGCCTTGA+GGG | - | chr1_1:20704069-20704088 | Msa0013390:intron | 50.0% | |
| ! | CCTCTGCTTTGATGACTTGC+AGG | + | chr1_1:20704360-20704379 | None:intergenic | 50.0% |
| CCTGCAAGTCATCAAAGCAG+AGG | - | chr1_1:20704357-20704376 | Msa0013390:intron | 50.0% | |
| GAAGCGATGTGAGGTCCAGT+TGG | + | chr1_1:20697569-20697588 | None:intergenic | 55.0% | |
| ! | CGGGTGTTGCGTTGAATGTG+TGG | - | chr1_1:20697795-20697814 | Msa0013390:CDS | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_1:20697940-20697959 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_1:20697939-20697958 | Msa0013390:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_1:20697940-20697959 | Msa0013390:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_1:20697946-20697965 | Msa0013390:intron | 55.0% | |
| AGTGTGCGGTGCCTTCTCAA+TGG | + | chr1_1:20698060-20698079 | None:intergenic | 55.0% | |
| GTGCTAACTCTGCTCCTCAC+TGG | - | chr1_1:20698994-20699013 | Msa0013390:intron | 55.0% | |
| ACCCAAATGCCGCAGTTAGG+CGG | + | chr1_1:20699824-20699843 | None:intergenic | 55.0% | |
| TCCCACATTGCCGAGGGATA+TGG | - | chr1_1:20699903-20699922 | Msa0013390:intron | 55.0% | |
| GCCATATCCCTCGGCAATGT+GGG | + | chr1_1:20699907-20699926 | None:intergenic | 55.0% | |
| TTTAGGAAGGAGGGCCGTCT+CGG | + | chr1_1:20700015-20700034 | None:intergenic | 55.0% | |
| CCTGCCCTCACCTTACAAGT+CGG | - | chr1_1:20701841-20701860 | Msa0013390:intron | 55.0% | |
| AGCCGCGACTCACGTGTATA+AGG | - | chr1_1:20703629-20703648 | Msa0013390:intron | 55.0% | |
| GCCGCGACTCACGTGTATAA+GGG | - | chr1_1:20703630-20703649 | Msa0013390:intron | 55.0% | |
| ATGCCGCAGTTAGGCGGCTA+GGG | + | chr1_1:20699818-20699837 | None:intergenic | 60.0% | |
| AATGCCGCAGTTAGGCGGCT+AGG | + | chr1_1:20699819-20699838 | None:intergenic | 60.0% | |
| AGCCGCCTAACTGCGGCATT+TGG | - | chr1_1:20699819-20699838 | Msa0013390:intron | 60.0% | |
| GCCGCCTAACTGCGGCATTT+GGG | - | chr1_1:20699820-20699839 | Msa0013390:intron | 60.0% | |
| GGCCATATCCCTCGGCAATG+TGG | + | chr1_1:20699908-20699927 | None:intergenic | 60.0% | |
| CGGCTTGTAAGGTGAGGGCA+GGG | + | chr1_1:20699958-20699977 | None:intergenic | 60.0% | |
| CCTGCCCTCACCTTACAAGC+CGG | - | chr1_1:20699956-20699975 | Msa0013390:intron | 60.0% | |
| ! | CCGACTTGTAAGGTGAGGGC+AGG | + | chr1_1:20701844-20701863 | None:intergenic | 60.0% |
| CTCCCCTAGCCGCCTAACTG+CGG | - | chr1_1:20699812-20699831 | Msa0013390:intron | 65.0% | |
| TGCCGCAGTTAGGCGGCTAG+GGG | + | chr1_1:20699817-20699836 | None:intergenic | 65.0% | |
| ! | CCGGCTTGTAAGGTGAGGGC+AGG | + | chr1_1:20699959-20699978 | None:intergenic | 65.0% |
| CGCAGTTAGGCGGCTAGGGG+AGG | + | chr1_1:20699814-20699833 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20697440 | 20704692 | 20697440 | ID=Msa0013390;Name=Msa0013390 |
| chr1_1 | mRNA | 20697440 | 20704692 | 20697440 | ID=Msa0013390-mRNA-1;Parent=Msa0013390;Name=Msa0013390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=48|1|1|1|1|1|8|306|213 |
| chr1_1 | exon | 20697440 | 20697856 | 20697440 | ID=Msa0013390-mRNA-1:exon:7398;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20698006 | 20698065 | 20698006 | ID=Msa0013390-mRNA-1:exon:7397;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20698644 | 20698691 | 20698644 | ID=Msa0013390-mRNA-1:exon:7396;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20698784 | 20698872 | 20698784 | ID=Msa0013390-mRNA-1:exon:7395;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20699674 | 20699722 | 20699674 | ID=Msa0013390-mRNA-1:exon:7394;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20699995 | 20700064 | 20699995 | ID=Msa0013390-mRNA-1:exon:7393;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20702772 | 20702869 | 20702772 | ID=Msa0013390-mRNA-1:exon:7392;Parent=Msa0013390-mRNA-1 |
| chr1_1 | exon | 20704528 | 20704692 | 20704528 | ID=Msa0013390-mRNA-1:exon:7391;Parent=Msa0013390-mRNA-1 |
| chr1_1 | five_prime_UTR | 20704645 | 20704692 | 20704645 | ID=Msa0013390-mRNA-1:five_prime_utr;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20704528 | 20704644 | 20704528 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20702772 | 20702869 | 20702772 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20699995 | 20700064 | 20699995 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20699674 | 20699722 | 20699674 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20698784 | 20698872 | 20698784 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20698644 | 20698691 | 20698644 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20698006 | 20698065 | 20698006 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | CDS | 20697746 | 20697856 | 20697746 | ID=Msa0013390-mRNA-1:cds;Parent=Msa0013390-mRNA-1 |
| chr1_1 | three_prime_UTR | 20697440 | 20697745 | 20697440 | ID=Msa0013390-mRNA-1:three_prime_utr;Parent=Msa0013390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
