Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062300 | XP_024633463.1 | 99.061 | 213 | 2 | 0 | 1 | 213 | 1 | 213 | 2.77e-155 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062300 | sp|F1QVR8|METL5_DANRE | 54.327 | 208 | 90 | 5 | 1 | 205 | 1 | 206 | 1.64e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062300 | G7IA40 | 99.061 | 213 | 2 | 0 | 1 | 213 | 1 | 213 | 1.32e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013390 | Msa0062300 | 0.802973 | 4.351133e-49 | -8.615850e-47 |
| Msa0062300 | Msa0475580 | 0.805392 | 1.364810e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062300 | MtrunA17_Chr1g0162731 | 99.061 | 213 | 2 | 0 | 1 | 213 | 1 | 213 | 2.54e-159 | 438 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062300 | AT4G28830.4 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 3.47e-115 | 327 |
| Msa0062300 | AT4G28830.3 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 3.47e-115 | 327 |
| Msa0062300 | AT4G28830.1 | 76.585 | 205 | 48 | 0 | 1 | 205 | 1 | 205 | 3.47e-115 | 327 |
| Msa0062300 | AT4G28830.2 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 1.58e-79 | 235 |
Find 47 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATTTGGAACTCGGAAAA+AGG | 0.184618 | 1_2:-21596558 | Msa0062300:CDS |
| TCATGAGCACTTGTTAGATT+TGG | 0.240313 | 1_2:-21595403 | Msa0062300:three_prime_UTR |
| GATGCTATTTCAAGAGATTC+TGG | 0.249680 | 1_2:+21597755 | None:intergenic |
| TCAACCGTGAATCTCCTTAA+AGG | 0.268017 | 1_2:-21595255 | Msa0062300:three_prime_UTR |
| TTATGAAATTTGTACAATTT+CGG | 0.285765 | 1_2:+21595554 | None:intergenic |
| CAATCTTTGGTTGAGGGAAT+TGG | 0.296999 | 1_2:+21602333 | None:intergenic |
| CATGAGCACTTGTTAGATTT+GGG | 0.300667 | 1_2:-21595402 | Msa0062300:three_prime_UTR |
| GGATGTGGTTGTGGTACTTT+AGG | 0.308636 | 1_2:-21600567 | Msa0062300:CDS |
| CCTCTGCTTTGATGACTTCC+AGG | 0.317088 | 1_2:+21595488 | None:intergenic |
| TATTGTTCAAGCTCAATCTT+TGG | 0.321728 | 1_2:+21602320 | None:intergenic |
| TATCTTCTTCACCATTTCTC+TGG | 0.361958 | 1_2:-21602407 | Msa0062300:five_prime_UTR |
| CACATCATCAAAAGAATTCT+CGG | 0.368740 | 1_2:+21600614 | None:intergenic |
| TGACAGTGGCGGTGAAAGTT+TGG | 0.374829 | 1_2:-21602445 | Msa0062300:five_prime_UTR |
| ATGTGAAACGTGCAGCCTTA+AGG | 0.383244 | 1_2:-21595778 | Msa0062300:CDS |
| TGTGAAACGTGCAGCCTTAA+GGG | 0.405820 | 1_2:-21595777 | Msa0062300:CDS |
| ATAATAACTGTATCAACAAC+TGG | 0.412753 | 1_2:+21596587 | None:intergenic |
| GGCAAGAATTAAAATAGTTA+AGG | 0.419923 | 1_2:-21595234 | Msa0062300:three_prime_UTR |
| AAACTTACTCTGCACTCAAA+AGG | 0.421281 | 1_2:+21600532 | None:intergenic |
| GTTGAGCACAATTATAAAAG+AGG | 0.423872 | 1_2:+21595374 | None:intergenic |
| TCTAGCATTGAAATCCCTTA+AGG | 0.427352 | 1_2:+21595763 | None:intergenic |
| CAAGCTCAATCTTTGGTTGA+GGG | 0.432977 | 1_2:+21602327 | None:intergenic |
| TAGATATTGCTGTTGATCTC+TGG | 0.436044 | 1_2:-21595520 | Msa0062300:CDS |
| GCTGACTTTGGATGTGGTTG+TGG | 0.455958 | 1_2:-21600576 | Msa0062300:CDS |
| CTTGCCTTTAAGGAGATTCA+CGG | 0.479127 | 1_2:+21595251 | None:intergenic |
| CTAATATCATGGACTTGAGA+TGG | 0.504121 | 1_2:-21597416 | Msa0062300:CDS |
| GAGCTTGAACAATACCCAAC+TGG | 0.504459 | 1_2:-21602311 | Msa0062300:CDS |
| ATGAAACTGAAAGAGTTAGA+AGG | 0.514164 | 1_2:-21602374 | Msa0062300:CDS |
| AACTTACTCTGCACTCAAAA+GGG | 0.515377 | 1_2:+21600533 | None:intergenic |
| CAAATTTCATAAGAAGAAAG+AGG | 0.523581 | 1_2:-21595543 | Msa0062300:CDS |
| TTTGTCAACTTGAGTGCATA+TGG | 0.526793 | 1_2:-21595196 | Msa0062300:three_prime_UTR |
| ACTAAAACTGCAGCTGGACA+TGG | 0.529183 | 1_2:-21597451 | Msa0062300:intron |
| TCAAGCTCAATCTTTGGTTG+AGG | 0.533527 | 1_2:+21602326 | None:intergenic |
| AACAAAGTAGTAGCTGACTT+TGG | 0.540597 | 1_2:-21600588 | Msa0062300:CDS |
| AAGCGATGTGAGGTCCAGTT+GGG | 0.548808 | 1_2:+21602297 | None:intergenic |
| GAAGCGATGTGAGGTCCAGT+TGG | 0.553995 | 1_2:+21602296 | None:intergenic |
| TCTTAATGCTGAGGAACTTG+AGG | 0.577969 | 1_2:-21597732 | Msa0062300:intron |
| GTAGTAGCTGACTTTGGATG+TGG | 0.589321 | 1_2:-21600582 | Msa0062300:CDS |
| TAGTGTAGACAGAATTTGTG+TGG | 0.602392 | 1_2:-21595461 | Msa0062300:three_prime_UTR |
| ATCATGGACTTGAGATGGAG+AGG | 0.614395 | 1_2:-21597411 | Msa0062300:intron |
| AAAGAGTTAGAAGGTCACCT+TGG | 0.624787 | 1_2:-21602365 | Msa0062300:CDS |
| AATAGCATCTCTTAATGCTG+AGG | 0.626732 | 1_2:-21597741 | Msa0062300:CDS |
| CCTGGAAGTCATCAAAGCAG+AGG | 0.663564 | 1_2:-21595488 | Msa0062300:CDS |
| AGCATACGAGAAGCGATGTG+AGG | 0.677746 | 1_2:+21602287 | None:intergenic |
| AAGTGCTGAAGTTATTTGTG+AGG | 0.687430 | 1_2:-21595741 | Msa0062300:intron |
| AGCACTAAAAGTAGTGACAG+TGG | 0.694374 | 1_2:-21602459 | Msa0062300:five_prime_UTR |
| GGAATTGGTCGAGAGAACCA+AGG | 0.704393 | 1_2:+21602348 | None:intergenic |
| ACTAAAAGTAGTGACAGTGG+CGG | 0.754874 | 1_2:-21602456 | Msa0062300:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAGTGAAAAAAAA+GGG | + | chr1_2:21595420-21595439 | None:intergenic | 10.0% |
| !! | ATAAAAAAAAGTGAAAAAAA+AGG | + | chr1_2:21595421-21595440 | None:intergenic | 10.0% |
| !! | GAATAATCATATATTATTAA+AGG | + | chr1_2:21595550-21595569 | None:intergenic | 10.0% |
| !!! | ATTATTTTTAAACTTCTTTA+TGG | + | chr1_2:21598214-21598233 | None:intergenic | 10.0% |
| !!! | GAAATAAAAGTTTATATTTT+GGG | + | chr1_2:21598279-21598298 | None:intergenic | 10.0% |
| !!! | AGAAATAAAAGTTTATATTT+TGG | + | chr1_2:21598280-21598299 | None:intergenic | 10.0% |
| !! | AAAATGATATTACATATAAA+TGG | - | chr1_2:21599026-21599045 | Msa0062300:intron | 10.0% |
| !!! | ATTATAATTTATTTTTTCAG+GGG | - | chr1_2:21599344-21599363 | Msa0062300:intron | 10.0% |
| !!! | ATGATTATTCTTTTTCTTTT+TGG | - | chr1_2:21595560-21595579 | Msa0062300:CDS | 15.0% |
| !! | AAAATCTTGAAAAGAATATA+TGG | + | chr1_2:21596005-21596024 | None:intergenic | 15.0% |
| !!! | AAAATTAATTACACTTGTTA+TGG | + | chr1_2:21596382-21596401 | None:intergenic | 15.0% |
| !!! | ATAACAAGTGTAATTAATTT+TGG | - | chr1_2:21596381-21596400 | Msa0062300:intron | 15.0% |
| !!! | TATTTTATACAATCTACAAA+AGG | - | chr1_2:21597281-21597300 | Msa0062300:intron | 15.0% |
| !! | AGAACAGTTTAATAATTTAT+TGG | - | chr1_2:21598316-21598335 | Msa0062300:intron | 15.0% |
| !! | GAACAGTTTAATAATTTATT+GGG | - | chr1_2:21598317-21598336 | Msa0062300:intron | 15.0% |
| !! | AACAGTTTAATAATTTATTG+GGG | - | chr1_2:21598318-21598337 | Msa0062300:intron | 15.0% |
| !!! | TTGTTAATTTTTTTTACTAG+TGG | - | chr1_2:21598750-21598769 | Msa0062300:intron | 15.0% |
| !! | GCAATATAAATAAGAAAAAT+AGG | + | chr1_2:21598900-21598919 | None:intergenic | 15.0% |
| !! | TAAAAAAATATTGTCAAAGT+AGG | - | chr1_2:21599400-21599419 | Msa0062300:intron | 15.0% |
| !!! | TTTTATTCAATCTAATATCA+TGG | - | chr1_2:21600233-21600252 | Msa0062300:intron | 15.0% |
| !!! | AACTAGTATTTTATATGATA+TGG | + | chr1_2:21600435-21600454 | None:intergenic | 15.0% |
| !! | AAATATTAACTCTTGAAAAA+TGG | + | chr1_2:21600484-21600503 | None:intergenic | 15.0% |
| !!! | AAATAACATGCATTTTTTAT+AGG | + | chr1_2:21600932-21600951 | None:intergenic | 15.0% |
| !!! | TTCCATATTTTTTTTTCATT+AGG | - | chr1_2:21601230-21601249 | Msa0062300:intron | 15.0% |
| !! | AACCTAATGAAAAAAAAATA+TGG | + | chr1_2:21601235-21601254 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTATTTCAATTAA+TGG | - | chr1_2:21601415-21601434 | Msa0062300:intron | 15.0% |
| !!! | TTTTATAAATCTGTAACAAA+CGG | + | chr1_2:21601554-21601573 | None:intergenic | 15.0% |
| !!! | GCTTATATATTTTACTTTTT+AGG | + | chr1_2:21601586-21601605 | None:intergenic | 15.0% |
| !!! | TTTTCAAGTGATTTATATTA+TGG | - | chr1_2:21601670-21601689 | Msa0062300:intron | 15.0% |
| !! | TTATGAAATTTGTACAATTT+CGG | + | chr1_2:21602109-21602128 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGTACTTTGTTAA+TGG | - | chr1_2:21595504-21595523 | Msa0062300:CDS | 20.0% |
| !!! | TTTTGTAGTACTTTGTTAAT+GGG | - | chr1_2:21595505-21595524 | Msa0062300:CDS | 20.0% |
| !! | TCATAGATCAATATAAACAA+GGG | + | chr1_2:21595948-21595967 | None:intergenic | 20.0% |
| !! | TTCATAGATCAATATAAACA+AGG | + | chr1_2:21595949-21595968 | None:intergenic | 20.0% |
| !! | GATGTCATATATTTAATCTA+TGG | + | chr1_2:21596110-21596129 | None:intergenic | 20.0% |
| !! | AAACATTTATACATTCACAT+GGG | + | chr1_2:21596613-21596632 | None:intergenic | 20.0% |
| !! | ATTTGCAAATAATAAGCTTA+TGG | - | chr1_2:21596932-21596951 | Msa0062300:intron | 20.0% |
| !! | ATTTACATAGCATAAAGTAA+AGG | + | chr1_2:21597208-21597227 | None:intergenic | 20.0% |
| !!! | ACTATAATGACATTGATTAT+AGG | - | chr1_2:21597238-21597257 | Msa0062300:intron | 20.0% |
| !!! | ACAATTGATTTGAGATTTAT+TGG | - | chr1_2:21597357-21597376 | Msa0062300:intron | 20.0% |
| !!! | AGTGTAAGTATTTTTGAAAT+GGG | + | chr1_2:21598127-21598146 | None:intergenic | 20.0% |
| !!! | AAGTGTAAGTATTTTTGAAA+TGG | + | chr1_2:21598128-21598147 | None:intergenic | 20.0% |
| !! | TTGTGTATATAACAACATAT+TGG | + | chr1_2:21598719-21598738 | None:intergenic | 20.0% |
| !!! | ATATAAGTTGTTGTTTGATT+TGG | + | chr1_2:21599321-21599340 | None:intergenic | 20.0% |
| !!! | AGCAATTGTTATTTTTATGT+TGG | - | chr1_2:21600146-21600165 | Msa0062300:intron | 20.0% |
| !!! | TTGAAGCATAACTAATATTT+TGG | - | chr1_2:21600335-21600354 | Msa0062300:intron | 20.0% |
| !!! | TGAAGCATAACTAATATTTT+GGG | - | chr1_2:21600336-21600355 | Msa0062300:intron | 20.0% |
| !!! | TATAAAATACTAGTTGATGA+TGG | - | chr1_2:21600440-21600459 | Msa0062300:intron | 20.0% |
| !!! | ATAAAATACTAGTTGATGAT+GGG | - | chr1_2:21600441-21600460 | Msa0062300:intron | 20.0% |
| !! | AAATGGAGAAAAGAAAATTT+AGG | + | chr1_2:21600467-21600486 | None:intergenic | 20.0% |
| !!! | AAAAAATGCATGTTATTTAC+TGG | - | chr1_2:21600934-21600953 | Msa0062300:intron | 20.0% |
| !!! | TATTTTAATTCTTGCCTTTA+AGG | + | chr1_2:21602422-21602441 | None:intergenic | 20.0% |
| ! | TACAAAATGAAGATGGTATA+AGG | + | chr1_2:21595492-21595511 | None:intergenic | 25.0% |
| !! | AAAGTACTACAAAATGAAGA+TGG | + | chr1_2:21595499-21595518 | None:intergenic | 25.0% |
| ! | CTAAAACTAACTAACACAAT+CGG | - | chr1_2:21595861-21595880 | Msa0062300:intron | 25.0% |
| ! | TAAAACTAACTAACACAATC+GGG | - | chr1_2:21595862-21595881 | Msa0062300:intron | 25.0% |
| !!! | TTCACATCAGTTTTAATTCA+AGG | - | chr1_2:21595903-21595922 | Msa0062300:intron | 25.0% |
| ! | GATTAAATATATGACATCCT+AGG | - | chr1_2:21596112-21596131 | Msa0062300:intron | 25.0% |
| ! | GGAAATATTCTTTCAAATCA+GGG | + | chr1_2:21596275-21596294 | None:intergenic | 25.0% |
| ! | AGGAAATATTCTTTCAAATC+AGG | + | chr1_2:21596276-21596295 | None:intergenic | 25.0% |
| !!! | TTAATTTTGGTACGTAGAAA+TGG | - | chr1_2:21596394-21596413 | Msa0062300:CDS | 25.0% |
| ! | GAAACATTTATACATTCACA+TGG | + | chr1_2:21596614-21596633 | None:intergenic | 25.0% |
| ! | ATTTACTGGAAAAAATGTTG+CGG | + | chr1_2:21596636-21596655 | None:intergenic | 25.0% |
| ! | ATGAAGTTTGAATACTTACT+AGG | - | chr1_2:21596699-21596718 | Msa0062300:intron | 25.0% |
| ! | ATAAAATGAAAACCTTCCAT+AGG | + | chr1_2:21596836-21596855 | None:intergenic | 25.0% |
| !! | TATGGAAGGTTTTCATTTTA+TGG | - | chr1_2:21596835-21596854 | Msa0062300:intron | 25.0% |
| !! | TTCATTTTATGGTTGAGATT+AGG | - | chr1_2:21596846-21596865 | Msa0062300:intron | 25.0% |
| !! | TCATTTTATGGTTGAGATTA+GGG | - | chr1_2:21596847-21596866 | Msa0062300:intron | 25.0% |
| ! | ATTGTAGAAAATCAATCCAA+TGG | - | chr1_2:21596892-21596911 | Msa0062300:intron | 25.0% |
| ! | CGATGATGTAGATTATTTAA+AGG | + | chr1_2:21597408-21597427 | None:intergenic | 25.0% |
| !!! | ATCATCGATTTGAAAATAGA+CGG | - | chr1_2:21597421-21597440 | Msa0062300:CDS | 25.0% |
| !! | TTGAACTTGGTATTTGATTT+AGG | + | chr1_2:21597813-21597832 | None:intergenic | 25.0% |
| ! | TAAATCAAATACCAAGTTCA+AGG | - | chr1_2:21597812-21597831 | Msa0062300:intron | 25.0% |
| !! | TTGTAAACTCATGATTTTCT+AGG | - | chr1_2:21598030-21598049 | Msa0062300:intron | 25.0% |
| !!! | GTGTAAGTATTTTTGAAATG+GGG | + | chr1_2:21598126-21598145 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGGTATCAGAA+TGG | + | chr1_2:21598268-21598287 | None:intergenic | 25.0% |
| ! | TTGAAGGTTTATCCTTTAAT+AGG | + | chr1_2:21598467-21598486 | None:intergenic | 25.0% |
| ! | AAGTTCGAGAAAATTATTGA+AGG | + | chr1_2:21598483-21598502 | None:intergenic | 25.0% |
| !! | ATATAACAACATATTGGCTA+AGG | + | chr1_2:21598713-21598732 | None:intergenic | 25.0% |
| ! | ACTTGATTGAGTAATAAAAC+TGG | + | chr1_2:21598798-21598817 | None:intergenic | 25.0% |
| !!! | TGGTAATGTTTTTTTACTAG+TGG | - | chr1_2:21598938-21598957 | Msa0062300:intron | 25.0% |
| !!! | TCTTGTTTTATATAACGTCA+AGG | - | chr1_2:21599092-21599111 | Msa0062300:intron | 25.0% |
| !! | ACAAAAAAGAGCATACATAT+AGG | + | chr1_2:21599618-21599637 | None:intergenic | 25.0% |
| !! | TTGAACTTGGTATTTGATTT+AGG | + | chr1_2:21597813-21597832 | None:intergenic | 25.0% |
| ! | TAAATCAAATACCAAGTTCA+AGG | - | chr1_2:21597812-21597831 | Msa0062300:intron | 25.0% |
| ! | TAAAATATTACTCGATTGAG+AGG | + | chr1_2:21599817-21599836 | None:intergenic | 25.0% |
| ! | TGATTGTATCATACTATTGA+AGG | + | chr1_2:21600296-21600315 | None:intergenic | 25.0% |
| !! | ATAAATTCTGACCTTATTTC+TGG | - | chr1_2:21600363-21600382 | Msa0062300:intron | 25.0% |
| !! | TGTTTTCTATGTATCAAACT+TGG | - | chr1_2:21600528-21600547 | Msa0062300:intron | 25.0% |
| ! | ACAACAACAATATGAAATGA+AGG | - | chr1_2:21600686-21600705 | Msa0062300:intron | 25.0% |
| ! | TTCTGAATTGTATTGTATGA+AGG | - | chr1_2:21600857-21600876 | Msa0062300:intron | 25.0% |
| !! | TTTTTATAGGCAAATGTTAG+TGG | + | chr1_2:21600919-21600938 | None:intergenic | 25.0% |
| ! | ATAATAACTGTATCAACAAC+TGG | + | chr1_2:21601076-21601095 | None:intergenic | 25.0% |
| !!! | GTTACAGTTTTTTTTTTCTG+TGG | - | chr1_2:21601471-21601490 | Msa0062300:intron | 25.0% |
| !! | TTTTGAGCTACATAGATTTA+GGG | + | chr1_2:21601799-21601818 | None:intergenic | 25.0% |
| ! | ATGGTACTGTTATATATAAG+GGG | + | chr1_2:21601837-21601856 | None:intergenic | 25.0% |
| ! | CATGGTACTGTTATATATAA+GGG | + | chr1_2:21601838-21601857 | None:intergenic | 25.0% |
| ! | CTTATATATAACAGTACCAT+GGG | - | chr1_2:21601837-21601856 | Msa0062300:intron | 25.0% |
| ! | ATCATATAAAAATCAACCCA+TGG | + | chr1_2:21601856-21601875 | None:intergenic | 25.0% |
| ! | CAAATTTCATAAGAAGAAAG+AGG | - | chr1_2:21602117-21602136 | Msa0062300:intron | 25.0% |
| ! | GGCAAGAATTAAAATAGTTA+AGG | - | chr1_2:21602426-21602445 | Msa0062300:five_prime_UTR | 25.0% |
| !!! | TCGATTTTTTTCCAGAGAAA+TGG | + | chr1_2:21595267-21595286 | None:intergenic | 30.0% |
| ATGAAACTGAAAGAGTTAGA+AGG | - | chr1_2:21595286-21595305 | Msa0062300:three_prime_UTR | 30.0% | |
| TATTGTTCAAGCTCAATCTT+TGG | + | chr1_2:21595343-21595362 | None:intergenic | 30.0% | |
| ! | AAAGTTTAAAGGGGCATAAA+GGG | + | chr1_2:21595446-21595465 | None:intergenic | 30.0% |
| ! | TAAAGTTTAAAGGGGCATAA+AGG | + | chr1_2:21595447-21595466 | None:intergenic | 30.0% |
| TTGAGCAGTAAAGTTTAAAG+GGG | + | chr1_2:21595455-21595474 | None:intergenic | 30.0% | |
| CTTGAGCAGTAAAGTTTAAA+GGG | + | chr1_2:21595456-21595475 | None:intergenic | 30.0% | |
| ACTTGAGCAGTAAAGTTTAA+AGG | + | chr1_2:21595457-21595476 | None:intergenic | 30.0% | |
| !!! | TCTTTTTGGTGTTAGAAATG+CGG | - | chr1_2:21595574-21595593 | Msa0062300:intron | 30.0% |
| TTTGTGCTGTGATAATCATA+TGG | - | chr1_2:21595789-21595808 | Msa0062300:intron | 30.0% | |
| !!! | TGTTAGTTAGTTTTAGTGTG+CGG | + | chr1_2:21595857-21595876 | None:intergenic | 30.0% |
| TTGAAATTGCAGATGTTAGT+AGG | - | chr1_2:21596073-21596092 | Msa0062300:intron | 30.0% | |
| ! | TATATGACATCCTAGGTTTT+TGG | - | chr1_2:21596119-21596138 | Msa0062300:intron | 30.0% |
| GAGATATCATATGGCAAAAA+TGG | + | chr1_2:21596441-21596460 | None:intergenic | 30.0% | |
| TATGCTATACATAGTATGAC+AGG | - | chr1_2:21596479-21596498 | Msa0062300:intron | 30.0% | |
| ATGTTCTTGCACAAATTTAC+TGG | + | chr1_2:21596650-21596669 | None:intergenic | 30.0% | |
| AATACTAACTATGTAGTCAG+TGG | - | chr1_2:21596742-21596761 | Msa0062300:intron | 30.0% | |
| TTTGTGCTCTAATAATCCTA+TGG | - | chr1_2:21596817-21596836 | Msa0062300:intron | 30.0% | |
| CACATCATCAAAAGAATTCT+CGG | + | chr1_2:21597049-21597068 | None:intergenic | 30.0% | |
| TAAGTTTCAGCTTTCTTTCT+TGG | - | chr1_2:21597144-21597163 | Msa0062300:intron | 30.0% | |
| AACGTGTATTAGTTAATGCA+GGG | + | chr1_2:21597316-21597335 | None:intergenic | 30.0% | |
| AAACGTGTATTAGTTAATGC+AGG | + | chr1_2:21597317-21597336 | None:intergenic | 30.0% | |
| CAGTGTATAGTTCAGAAATT+AGG | + | chr1_2:21597529-21597548 | None:intergenic | 30.0% | |
| TATACACTGTTTCACATACA+TGG | - | chr1_2:21597540-21597559 | Msa0062300:intron | 30.0% | |
| ATGCTTTATAAACACTACAC+AGG | + | chr1_2:21597710-21597729 | None:intergenic | 30.0% | |
| TGTGTAGTGTTTATAAAGCA+TGG | - | chr1_2:21597709-21597728 | Msa0062300:intron | 30.0% | |
| ACTCAATATAAAATCCGAGA+CGG | - | chr1_2:21597779-21597798 | Msa0062300:CDS | 30.0% | |
| ! | GGTATTTGATTTAGGAAAGA+GGG | + | chr1_2:21597805-21597824 | None:intergenic | 30.0% |
| ! | TGGTATTTGATTTAGGAAAG+AGG | + | chr1_2:21597806-21597825 | None:intergenic | 30.0% |
| ! | TGAATTTTCATCCTTGAACT+TGG | + | chr1_2:21597826-21597845 | None:intergenic | 30.0% |
| GAACAATATGAAAGAAAGTG+AGG | - | chr1_2:21598340-21598359 | Msa0062300:intron | 30.0% | |
| AAAGTGAGGTTAAAGTGATT+TGG | - | chr1_2:21598354-21598373 | Msa0062300:intron | 30.0% | |
| !! | AGTAATTTGCTTGTTGTGTT+CGG | - | chr1_2:21598515-21598534 | Msa0062300:intron | 30.0% |
| !!! | TCAAGCTTTAGAAGTTTTGT+TGG | - | chr1_2:21598677-21598696 | Msa0062300:intron | 30.0% |
| GCACATAAGTTATATCAAGT+TGG | - | chr1_2:21598918-21598937 | Msa0062300:intron | 30.0% | |
| ATAAACTGTAACGTGTACAT+AGG | + | chr1_2:21599199-21599218 | None:intergenic | 30.0% | |
| ATAGTATACTAGCATGGAAA+TGG | - | chr1_2:21599581-21599600 | Msa0062300:intron | 30.0% | |
| TAGTATACTAGCATGGAAAT+GGG | - | chr1_2:21599582-21599601 | Msa0062300:intron | 30.0% | |
| ACCCAATATAAAATCTGAGA+CGG | - | chr1_2:21599695-21599714 | Msa0062300:intron | 30.0% | |
| ! | ACCGTCTCAGATTTTATATT+GGG | + | chr1_2:21599699-21599718 | None:intergenic | 30.0% |
| ! | AACCGTCTCAGATTTTATAT+TGG | + | chr1_2:21599700-21599719 | None:intergenic | 30.0% |
| ! | ACTTGGTATTTGATTTAGGA+AGG | + | chr1_2:21597809-21597828 | None:intergenic | 30.0% |
| ! | TGAATTTTCATCCTTGAACT+TGG | + | chr1_2:21597826-21597845 | None:intergenic | 30.0% |
| TTGCTCGTTATATTGATGAA+TGG | - | chr1_2:21599961-21599980 | Msa0062300:intron | 30.0% | |
| TATTGATGAATGGAAGTCTT+AGG | - | chr1_2:21599971-21599990 | Msa0062300:intron | 30.0% | |
| !! | GACCTTATTTCTGGAAATAT+TGG | - | chr1_2:21600372-21600391 | Msa0062300:intron | 30.0% |
| CTCCAATATTTCCAGAAATA+AGG | + | chr1_2:21600377-21600396 | None:intergenic | 30.0% | |
| TTGCTTTCATTCATTGTGTT+TGG | - | chr1_2:21600598-21600617 | Msa0062300:CDS | 30.0% | |
| TGCTTTCATTCATTGTGTTT+GGG | - | chr1_2:21600599-21600618 | Msa0062300:CDS | 30.0% | |
| AATATGAAATGAAGGCTTAC+TGG | - | chr1_2:21600694-21600713 | Msa0062300:intron | 30.0% | |
| ! | GTGCATATTTTGCTCTTAAT+TGG | - | chr1_2:21600780-21600799 | Msa0062300:intron | 30.0% |
| TGAATTGTATTGTATGAAGG+AGG | - | chr1_2:21600860-21600879 | Msa0062300:intron | 30.0% | |
| ! | TTTTCTTTCTGTTGCTATGA+AGG | - | chr1_2:21601138-21601157 | Msa0062300:intron | 30.0% |
| ! | AAACAAAACATATTGGTTGG+TGG | + | chr1_2:21601383-21601402 | None:intergenic | 30.0% |
| GGAAAACAAAACATATTGGT+TGG | + | chr1_2:21601386-21601405 | None:intergenic | 30.0% | |
| GTGAGGAAAACAAAACATAT+TGG | + | chr1_2:21601390-21601409 | None:intergenic | 30.0% | |
| AATAAACAAGAACATCAGTG+AGG | + | chr1_2:21601407-21601426 | None:intergenic | 30.0% | |
| ! | CTTTTGAGCTACATAGATTT+AGG | + | chr1_2:21601800-21601819 | None:intergenic | 30.0% |
| TGGTACTGTTATATATAAGG+GGG | + | chr1_2:21601836-21601855 | None:intergenic | 30.0% | |
| CCATGGTACTGTTATATATA+AGG | + | chr1_2:21601839-21601858 | None:intergenic | 30.0% | |
| CCTTATATATAACAGTACCA+TGG | - | chr1_2:21601836-21601855 | Msa0062300:intron | 30.0% | |
| ! | TTTGTATGCTTTTGTAGCTT+CGG | - | chr1_2:21602074-21602093 | Msa0062300:intron | 30.0% |
| GTTGAGCACAATTATAAAAG+AGG | + | chr1_2:21602289-21602308 | None:intergenic | 30.0% | |
| TATCTTCTTCACCATTTCTC+TGG | - | chr1_2:21595253-21595272 | Msa0062300:three_prime_UTR | 35.0% | |
| !!! | CTTTTTGGTGTTAGAAATGC+GGG | - | chr1_2:21595575-21595594 | Msa0062300:intron | 35.0% |
| GTAAGATAGTCAGAACACTA+TGG | - | chr1_2:21595654-21595673 | Msa0062300:intron | 35.0% | |
| ! | GAACACTATGGTGGAAAATT+TGG | - | chr1_2:21595666-21595685 | Msa0062300:intron | 35.0% |
| TGGTTTATGACAGAACACTA+TGG | - | chr1_2:21595686-21595705 | Msa0062300:intron | 35.0% | |
| ! | CAATGGTAATGTAATGCAAC+AGG | + | chr1_2:21595826-21595845 | None:intergenic | 35.0% |
| GCATTACATTACCATTGAGA+AGG | - | chr1_2:21595829-21595848 | Msa0062300:intron | 35.0% | |
| TTGATGTTTGCCAAAAACCT+AGG | + | chr1_2:21596132-21596151 | None:intergenic | 35.0% | |
| GGAGGATATATATCTCAAGA+GGG | + | chr1_2:21596197-21596216 | None:intergenic | 35.0% | |
| AGGAGGATATATATCTCAAG+AGG | + | chr1_2:21596198-21596217 | None:intergenic | 35.0% | |
| GAGATATATATCCTCCTCTA+AGG | - | chr1_2:21596201-21596220 | Msa0062300:intron | 35.0% | |
| AATCAACTTATCCTTAGAGG+AGG | + | chr1_2:21596215-21596234 | None:intergenic | 35.0% | |
| GTGAATCAACTTATCCTTAG+AGG | + | chr1_2:21596218-21596237 | None:intergenic | 35.0% | |
| GCAGTTAGGGGTAATAATAA+TGG | + | chr1_2:21596251-21596270 | None:intergenic | 35.0% | |
| CCTCTCTTAGAGATATCATA+TGG | + | chr1_2:21596450-21596469 | None:intergenic | 35.0% | |
| ! | CCATATGATATCTCTAAGAG+AGG | - | chr1_2:21596447-21596466 | Msa0062300:intron | 35.0% |
| CAAGATCATTCCTTGAATGA+AGG | + | chr1_2:21596523-21596542 | None:intergenic | 35.0% | |
| GATCTTGATCTCTTCTAAGT+TGG | - | chr1_2:21596536-21596555 | Msa0062300:CDS | 35.0% | |
| AGTCATTAGTTCCTAACTGT+GGG | + | chr1_2:21596577-21596596 | None:intergenic | 35.0% | |
| AAGTCATTAGTTCCTAACTG+TGG | + | chr1_2:21596578-21596597 | None:intergenic | 35.0% | |
| ACAGTTAGGAACTAATGACT+TGG | - | chr1_2:21596577-21596596 | Msa0062300:CDS | 35.0% | |
| ACTTCATCTCTTTCAGTTTG+TGG | + | chr1_2:21596686-21596705 | None:intergenic | 35.0% | |
| TGCTCTAATAATCCTATGGA+AGG | - | chr1_2:21596821-21596840 | Msa0062300:intron | 35.0% | |
| ! | TTTTATGGTTGAGATTAGGG+AGG | - | chr1_2:21596850-21596869 | Msa0062300:intron | 35.0% |
| TATTGTGATTCGTGTGAATC+AGG | - | chr1_2:21597023-21597042 | Msa0062300:intron | 35.0% | |
| ! | AACAAAGTAGTAGCTGACTT+TGG | - | chr1_2:21597072-21597091 | Msa0062300:intron | 35.0% |
| AACTTACTCTGCACTCAAAA+GGG | + | chr1_2:21597130-21597149 | None:intergenic | 35.0% | |
| AAACTTACTCTGCACTCAAA+AGG | + | chr1_2:21597131-21597150 | None:intergenic | 35.0% | |
| TTTCTCACACATCTAATGTG+CGG | - | chr1_2:21597458-21597477 | Msa0062300:intron | 35.0% | |
| ! | GTTTCACATACATGGTTTGT+TGG | - | chr1_2:21597548-21597567 | Msa0062300:intron | 35.0% |
| TGGAAATTCTGCTTTCATTG+TGG | - | chr1_2:21597568-21597587 | Msa0062300:intron | 35.0% | |
| TCGAACACCTTTAATGTGTT+GGG | - | chr1_2:21597641-21597660 | Msa0062300:intron | 35.0% | |
| TTTCACACCCAACACATTAA+AGG | + | chr1_2:21597651-21597670 | None:intergenic | 35.0% | |
| TTAATGTGTTGGGTGTGAAA+TGG | - | chr1_2:21597651-21597670 | Msa0062300:intron | 35.0% | |
| TAATGTGTTGGGTGTGAAAT+GGG | - | chr1_2:21597652-21597671 | Msa0062300:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr1_2:21597759-21597778 | None:intergenic | 35.0% | |
| !!! | AGCGTCTGATTATTTTAGAG+AGG | + | chr1_2:21598152-21598171 | None:intergenic | 35.0% |
| GAAAATGCTGAGGATGTAAT+AGG | - | chr1_2:21598431-21598450 | Msa0062300:intron | 35.0% | |
| ! | GGTCTTATCTCTCCTATTAA+AGG | - | chr1_2:21598452-21598471 | Msa0062300:intron | 35.0% |
| ACACAACAAGCAAATTACTG+AGG | + | chr1_2:21598514-21598533 | None:intergenic | 35.0% | |
| TTAGCGATATCAATCACATG+TGG | - | chr1_2:21598549-21598568 | Msa0062300:intron | 35.0% | |
| AACGTGTACATAGGAACAAA+TGG | + | chr1_2:21599190-21599209 | None:intergenic | 35.0% | |
| CATTAGCGCAATAAGAAAAG+TGG | - | chr1_2:21599470-21599489 | Msa0062300:intron | 35.0% | |
| AATAAGAAAAGTGGTCAGAC+TGG | - | chr1_2:21599479-21599498 | Msa0062300:intron | 35.0% | |
| AGCGTTTAGACAGTTTAGAT+GGG | + | chr1_2:21599514-21599533 | None:intergenic | 35.0% | |
| TTGTTAAACTGCGACATGAA+CGG | - | chr1_2:21599551-21599570 | Msa0062300:intron | 35.0% | |
| ! | AAGAGCATACATATAGGCAA+GGG | + | chr1_2:21599612-21599631 | None:intergenic | 35.0% |
| ! | AAAGAGCATACATATAGGCA+AGG | + | chr1_2:21599613-21599632 | None:intergenic | 35.0% |
| ! | GGTATTTGATTTAGGAAGGA+GGG | + | chr1_2:21599732-21599751 | None:intergenic | 35.0% |
| ! | TGGTATTTGATTTAGGAAGG+AGG | + | chr1_2:21599733-21599752 | None:intergenic | 35.0% |
| !! | GATGCTATTTCAAGAGATTC+TGG | + | chr1_2:21599908-21599927 | None:intergenic | 35.0% |
| AATAGCATCTCTTAATGCTG+AGG | - | chr1_2:21599919-21599938 | Msa0062300:intron | 35.0% | |
| TCTTAGGTTTCTCTATAACC+AGG | - | chr1_2:21599987-21600006 | Msa0062300:intron | 35.0% | |
| TCTATAACCAGGTTTCTTGT+TGG | - | chr1_2:21599998-21600017 | Msa0062300:intron | 35.0% | |
| TATTCAACTAAAACTGCAGC+TGG | - | chr1_2:21600203-21600222 | Msa0062300:intron | 35.0% | |
| CTAATATCATGGACTTGAGA+TGG | - | chr1_2:21600244-21600263 | Msa0062300:intron | 35.0% | |
| GGTTTATGTTTGAACTCTTG+TGG | - | chr1_2:21600549-21600568 | Msa0062300:CDS | 35.0% | |
| AATGAAAGCAACGTAATCCT+AGG | + | chr1_2:21600589-21600608 | None:intergenic | 35.0% | |
| TTGGCTTCTAATTATGTCTC+CGG | - | chr1_2:21600799-21600818 | Msa0062300:intron | 35.0% | |
| TATACTCTCAAGTATGATCC+CGG | + | chr1_2:21600821-21600840 | None:intergenic | 35.0% | |
| ACTGGTATTCAGTGTATTAG+TGG | - | chr1_2:21600952-21600971 | Msa0062300:intron | 35.0% | |
| TGAACAAGTTCCTATGATCT+TGG | - | chr1_2:21601036-21601055 | Msa0062300:intron | 35.0% | |
| GTTATTATGAATCCCCCATT+TGG | - | chr1_2:21601088-21601107 | Msa0062300:intron | 35.0% | |
| ! | TCTAGCATTGAAATCCCTTA+AGG | + | chr1_2:21601900-21601919 | None:intergenic | 35.0% |
| !! | AAGTGCTGAAGTTATTTGTG+AGG | - | chr1_2:21601919-21601938 | Msa0062300:intron | 35.0% |
| CTTACTACTACACAAAACAC+TGG | + | chr1_2:21602007-21602026 | None:intergenic | 35.0% | |
| ! | TAGATATTGCTGTTGATCTC+TGG | - | chr1_2:21602140-21602159 | Msa0062300:intron | 35.0% |
| TAGTGTAGACAGAATTTGTG+TGG | - | chr1_2:21602199-21602218 | Msa0062300:intron | 35.0% | |
| ! | TCATGAGCACTTGTTAGATT+TGG | - | chr1_2:21602257-21602276 | Msa0062300:intron | 35.0% |
| ! | CATGAGCACTTGTTAGATTT+GGG | - | chr1_2:21602258-21602277 | Msa0062300:intron | 35.0% |
| TTTGTCAACTTGAGTGCATA+TGG | - | chr1_2:21602464-21602483 | Msa0062300:five_prime_UTR | 35.0% | |
| AGCACTAAAAGTAGTGACAG+TGG | - | chr1_2:21595201-21595220 | Msa0062300:three_prime_UTR | 40.0% | |
| ACTAAAAGTAGTGACAGTGG+CGG | - | chr1_2:21595204-21595223 | Msa0062300:three_prime_UTR | 40.0% | |
| AAAGAGTTAGAAGGTCACCT+TGG | - | chr1_2:21595295-21595314 | Msa0062300:three_prime_UTR | 40.0% | |
| CAATCTTTGGTTGAGGGAAT+TGG | + | chr1_2:21595330-21595349 | None:intergenic | 40.0% | |
| CAAGCTCAATCTTTGGTTGA+GGG | + | chr1_2:21595336-21595355 | None:intergenic | 40.0% | |
| TCAAGCTCAATCTTTGGTTG+AGG | + | chr1_2:21595337-21595356 | None:intergenic | 40.0% | |
| AGATAGTCAGAACACTATGG+TGG | - | chr1_2:21595657-21595676 | Msa0062300:intron | 40.0% | |
| TAACTAACACAATCGGGAGT+TGG | - | chr1_2:21595868-21595887 | Msa0062300:intron | 40.0% | |
| TTCAAATCAGGGTGCAGTTA+GGG | + | chr1_2:21596264-21596283 | None:intergenic | 40.0% | |
| TTTCAAATCAGGGTGCAGTT+AGG | + | chr1_2:21596265-21596284 | None:intergenic | 40.0% | |
| CTCAAACTGTCCTTCATTCA+AGG | - | chr1_2:21596510-21596529 | Msa0062300:intron | 40.0% | |
| TAGCATTAGTTCCCACAGTT+AGG | - | chr1_2:21596563-21596582 | Msa0062300:CDS | 40.0% | |
| ACTTACTAGGACCACTAACT+AGG | - | chr1_2:21596712-21596731 | Msa0062300:intron | 40.0% | |
| TATTGCGTGTTCCTAGTTAG+TGG | + | chr1_2:21596726-21596745 | None:intergenic | 40.0% | |
| GTAGTCAGTGGAGAAATTCT+AGG | - | chr1_2:21596754-21596773 | Msa0062300:intron | 40.0% | |
| ATAAACAGTCCAAACCAGTG+AGG | + | chr1_2:21596793-21596812 | None:intergenic | 40.0% | |
| TGAGATTAGGGAGGAAGATA+AGG | - | chr1_2:21596859-21596878 | Msa0062300:intron | 40.0% | |
| TTCAAGACAGCTTCTGCATA+CGG | + | chr1_2:21597493-21597512 | None:intergenic | 40.0% | |
| !! | CAACACATTAAAGGTGTTCG+AGG | + | chr1_2:21597642-21597661 | None:intergenic | 40.0% |
| CTCGAACACCTTTAATGTGT+TGG | - | chr1_2:21597640-21597659 | Msa0062300:intron | 40.0% | |
| ! | ACTCATGATTTTCTAGGCCA+AGG | - | chr1_2:21598036-21598055 | Msa0062300:intron | 40.0% |
| ! | CTCATGATTTTCTAGGCCAA+GGG | - | chr1_2:21598037-21598056 | Msa0062300:intron | 40.0% |
| ! | GTGAGGTTAAAGTGATTTGG+TGG | - | chr1_2:21598357-21598376 | Msa0062300:intron | 40.0% |
| ! | CTCAGCATTTTCGCAAACAA+TGG | + | chr1_2:21598423-21598442 | None:intergenic | 40.0% |
| CATTGTTTGCGAAAATGCTG+AGG | - | chr1_2:21598421-21598440 | Msa0062300:intron | 40.0% | |
| ATGTGGATCACTGATGTTCA+GGG | - | chr1_2:21598566-21598585 | Msa0062300:intron | 40.0% | |
| !!! | CCTTGTTTTGTTTGCCTCAA+CGG | + | chr1_2:21598604-21598623 | None:intergenic | 40.0% |
| ! | AAGTTGTGCATTGACATGTG+TGG | + | chr1_2:21599226-21599245 | None:intergenic | 40.0% |
| CAGCGTTTAGACAGTTTAGA+TGG | + | chr1_2:21599515-21599534 | None:intergenic | 40.0% | |
| CATCTAAACTGTCTAAACGC+TGG | - | chr1_2:21599513-21599532 | Msa0062300:intron | 40.0% | |
| ! | GGGAGTATAGTATACTAGCA+TGG | - | chr1_2:21599575-21599594 | Msa0062300:intron | 40.0% |
| !! | AAAACCGACTTGTAAGGTGA+GGG | + | chr1_2:21599660-21599679 | None:intergenic | 40.0% |
| !! | CCTTACAAAACCGACTTGTA+AGG | + | chr1_2:21599666-21599685 | None:intergenic | 40.0% |
| !! | CCTTACAAGTCGGTTTTGTA+AGG | - | chr1_2:21599663-21599682 | Msa0062300:intron | 40.0% |
| TCTTAATGCTGAGGAACTTG+AGG | - | chr1_2:21599928-21599947 | Msa0062300:intron | 40.0% | |
| ATAACCAGGTTTCTTGTTGG+AGG | - | chr1_2:21600001-21600020 | Msa0062300:intron | 40.0% | |
| ! | TTTTCCTCCAACAAGAAACC+TGG | + | chr1_2:21600008-21600027 | None:intergenic | 40.0% |
| TGGTTGTATAACACACACCT+AGG | - | chr1_2:21600569-21600588 | Msa0062300:CDS | 40.0% | |
| ACATCCTTAAGAGCAAAGCA+AGG | + | chr1_2:21600762-21600781 | None:intergenic | 40.0% | |
| TGGCTTCTAATTATGTCTCC+GGG | - | chr1_2:21600800-21600819 | Msa0062300:intron | 40.0% | |
| !! | GGCAAAAGTACCAAGATCAT+AGG | + | chr1_2:21601049-21601068 | None:intergenic | 40.0% |
| ! | ATGATCTTGGTACTTTTGCC+AGG | - | chr1_2:21601049-21601068 | Msa0062300:intron | 40.0% |
| ! | TTTTTCCGAGTTCCAAATGG+GGG | + | chr1_2:21601103-21601122 | None:intergenic | 40.0% |
| ! | CTTTTTCCGAGTTCCAAATG+GGG | + | chr1_2:21601104-21601123 | None:intergenic | 40.0% |
| ! | CCTTTTTCCGAGTTCCAAAT+GGG | + | chr1_2:21601105-21601124 | None:intergenic | 40.0% |
| ! | CCATTTGGAACTCGGAAAAA+GGG | - | chr1_2:21601103-21601122 | Msa0062300:intron | 40.0% |
| !! | GTAAGCAATAGCATTGATGC+TGG | - | chr1_2:21601160-21601179 | Msa0062300:intron | 40.0% |
| !! | CAAAACATATTGGTTGGTGG+TGG | + | chr1_2:21601380-21601399 | None:intergenic | 40.0% |
| ! | GAGCTACATAGATTTAGGGT+AGG | + | chr1_2:21601795-21601814 | None:intergenic | 40.0% |
| ! | GTTTTGTGTAGTAGTAAGCG+TGG | - | chr1_2:21602009-21602028 | Msa0062300:intron | 40.0% |
| TCAACCGTGAATCTCCTTAA+AGG | - | chr1_2:21602405-21602424 | Msa0062300:five_prime_UTR | 40.0% | |
| ! | CTTGCCTTTAAGGAGATTCA+CGG | + | chr1_2:21602412-21602431 | None:intergenic | 40.0% |
| GAGCTTGAACAATACCCAAC+TGG | - | chr1_2:21595349-21595368 | Msa0062300:three_prime_UTR | 45.0% | |
| TGTGGTACGACTAGATGAGA+TGG | - | chr1_2:21595612-21595631 | Msa0062300:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_2:21595735-21595754 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_2:21595736-21595755 | None:intergenic | 45.0% |
| TCAAATCAGGGTGCAGTTAG+GGG | + | chr1_2:21596263-21596282 | None:intergenic | 45.0% | |
| GATGCGCGTATGCAAAATGA+AGG | + | chr1_2:21596296-21596315 | None:intergenic | 45.0% | |
| GATTAGGGAGGAAGATAAGG+TGG | - | chr1_2:21596862-21596881 | Msa0062300:intron | 45.0% | |
| AACACATGCTTGCACACCAT+TGG | + | chr1_2:21596911-21596930 | None:intergenic | 45.0% | |
| ! | GTAGTAGCTGACTTTGGATG+TGG | - | chr1_2:21597078-21597097 | Msa0062300:intron | 45.0% |
| GGATGTGGTTGTGGTACTTT+AGG | - | chr1_2:21597093-21597112 | Msa0062300:intron | 45.0% | |
| ACAGCTTCTGCATACGGATT+TGG | + | chr1_2:21597487-21597506 | None:intergenic | 45.0% | |
| ATTTAGTCCCACATTGCCGA+GGG | - | chr1_2:21597678-21597697 | Msa0062300:intron | 45.0% | |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | + | chr1_2:21597744-21597763 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1_2:21597750-21597769 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1_2:21597747-21597766 | Msa0062300:CDS | 45.0% |
| GACTAGTGTTTGTCAACCCT+TGG | + | chr1_2:21598056-21598075 | None:intergenic | 45.0% | |
| CATGTGGATCACTGATGTTC+AGG | - | chr1_2:21598565-21598584 | Msa0062300:intron | 45.0% | |
| ! | GATGTTCAGGGCTTGATTTG+TGG | - | chr1_2:21598578-21598597 | Msa0062300:intron | 45.0% |
| CCGTTGAGGCAAACAAAACA+AGG | - | chr1_2:21598601-21598620 | Msa0062300:intron | 45.0% | |
| TTAAACTGCGACATGAACGG+AGG | - | chr1_2:21599554-21599573 | Msa0062300:intron | 45.0% | |
| TAAACTGCGACATGAACGGA+GGG | - | chr1_2:21599555-21599574 | Msa0062300:intron | 45.0% | |
| !! | CAAAACCGACTTGTAAGGTG+AGG | + | chr1_2:21599661-21599680 | None:intergenic | 45.0% |
| ACTAAAACTGCAGCTGGACA+TGG | - | chr1_2:21600209-21600228 | Msa0062300:intron | 45.0% | |
| ATCATGGACTTGAGATGGAG+AGG | - | chr1_2:21600249-21600268 | Msa0062300:intron | 45.0% | |
| CTTAAGAGCAAAGCAAGGAG+AGG | + | chr1_2:21600757-21600776 | None:intergenic | 45.0% | |
| CTCTCCTTGCTTTGCTCTTA+AGG | - | chr1_2:21600755-21600774 | Msa0062300:intron | 45.0% | |
| ACTGTATCAACAACTGGACC+TGG | + | chr1_2:21601070-21601089 | None:intergenic | 45.0% | |
| ! | TGAATCCCCCATTTGGAACT+CGG | - | chr1_2:21601095-21601114 | Msa0062300:intron | 45.0% |
| ! | CCCATTTGGAACTCGGAAAA+AGG | - | chr1_2:21601102-21601121 | Msa0062300:intron | 45.0% |
| ! | CCCTTTTTCCGAGTTCCAAA+TGG | + | chr1_2:21601106-21601125 | None:intergenic | 45.0% |
| ! | TCGGAAAAAGGGTGCAGATT+TGG | - | chr1_2:21601114-21601133 | Msa0062300:intron | 45.0% |
| ATGTGAAACGTGCAGCCTTA+AGG | - | chr1_2:21601882-21601901 | Msa0062300:intron | 45.0% | |
| TGTGAAACGTGCAGCCTTAA+GGG | - | chr1_2:21601883-21601902 | Msa0062300:intron | 45.0% | |
| TAGTAAGCGTGGTGCAATTG+TGG | - | chr1_2:21602020-21602039 | Msa0062300:intron | 45.0% | |
| !! | CTATAATATTATATAAAAAT+TGG | - | chr1_2:21598823-21598842 | Msa0062300:intron | 5.0% |
| !!! | ATCATTTTATATAATATAAT+AGG | + | chr1_2:21599014-21599033 | None:intergenic | 5.0% |
| !!! | ATATTATAATTTATTTTTTC+AGG | - | chr1_2:21599342-21599361 | Msa0062300:intron | 5.0% |
| !!! | TATTATAATTTATTTTTTCA+GGG | - | chr1_2:21599343-21599362 | Msa0062300:intron | 5.0% |
| !!! | TAAATAAATAAATTACTTTT+AGG | - | chr1_2:21601519-21601538 | Msa0062300:intron | 5.0% |
| TGACAGTGGCGGTGAAAGTT+TGG | - | chr1_2:21595215-21595234 | Msa0062300:three_prime_UTR | 50.0% | |
| GGAATTGGTCGAGAGAACCA+AGG | + | chr1_2:21595315-21595334 | None:intergenic | 50.0% | |
| AAGCGATGTGAGGTCCAGTT+GGG | + | chr1_2:21595366-21595385 | None:intergenic | 50.0% | |
| AGCATACGAGAAGCGATGTG+AGG | + | chr1_2:21595376-21595395 | None:intergenic | 50.0% | |
| GGTACGACTAGATGAGATGG+TGG | - | chr1_2:21595615-21595634 | Msa0062300:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_2:21595731-21595750 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_2:21595737-21595756 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_2:21595734-21595753 | Msa0062300:intron | 50.0% | |
| ! | AACTCTGCTCCTCACTGGTT+TGG | - | chr1_2:21596781-21596800 | Msa0062300:intron | 50.0% |
| GGGAGGAAGATAAGGTGGTT+AGG | - | chr1_2:21596867-21596886 | Msa0062300:intron | 50.0% | |
| ! | GCTGACTTTGGATGTGGTTG+TGG | - | chr1_2:21597084-21597103 | Msa0062300:intron | 50.0% |
| GTAACCCAAATGCCGCAGTT+AGG | + | chr1_2:21597608-21597627 | None:intergenic | 50.0% | |
| GGTGTTCGAGGCTGCAATAA+AGG | + | chr1_2:21597630-21597649 | None:intergenic | 50.0% | |
| TGTGTTGGGTGTGAAATGGG+TGG | - | chr1_2:21597655-21597674 | Msa0062300:intron | 50.0% | |
| GATTTAGTCCCACATTGCCG+AGG | - | chr1_2:21597677-21597696 | Msa0062300:intron | 50.0% | |
| ACTACACAGGCCATATCCCT+CGG | + | chr1_2:21597697-21597716 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr1_2:21597745-21597764 | None:intergenic | 50.0% |
| TTTAGGAAAGAGGGCCGTCT+CGG | + | chr1_2:21597796-21597815 | None:intergenic | 50.0% | |
| ACCCTTATACACGTGAGTCG+CGG | + | chr1_2:21601445-21601464 | None:intergenic | 50.0% | |
| ! | GATCTCTGGCGTTTTGTACC+TGG | - | chr1_2:21602154-21602173 | Msa0062300:intron | 50.0% |
| ! | CCTCTGCTTTGATGACTTCC+AGG | + | chr1_2:21602175-21602194 | None:intergenic | 50.0% |
| CCTGGAAGTCATCAAAGCAG+AGG | - | chr1_2:21602172-21602191 | Msa0062300:intron | 50.0% | |
| GAAGCGATGTGAGGTCCAGT+TGG | + | chr1_2:21595367-21595386 | None:intergenic | 55.0% | |
| ! | CGGGTGTTGCGTTGAATGTG+TGG | - | chr1_2:21595594-21595613 | Msa0062300:intron | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_2:21595723-21595742 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_2:21595722-21595741 | Msa0062300:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_2:21595723-21595742 | Msa0062300:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_2:21595729-21595748 | Msa0062300:intron | 55.0% | |
| AGTGTGCGGTGCCTTCTCAA+TGG | + | chr1_2:21595843-21595862 | None:intergenic | 55.0% | |
| GTGCTAACTCTGCTCCTCAC+TGG | - | chr1_2:21596776-21596795 | Msa0062300:intron | 55.0% | |
| ACCCAAATGCCGCAGTTAGG+CGG | + | chr1_2:21597605-21597624 | None:intergenic | 55.0% | |
| TCCCACATTGCCGAGGGATA+TGG | - | chr1_2:21597684-21597703 | Msa0062300:intron | 55.0% | |
| GCCATATCCCTCGGCAATGT+GGG | + | chr1_2:21597688-21597707 | None:intergenic | 55.0% | |
| !! | GGCTTGATTTGTGGCCGTTG+AGG | - | chr1_2:21598587-21598606 | Msa0062300:intron | 55.0% |
| CCTGCCCTCACCTTACAAGT+CGG | - | chr1_2:21599653-21599672 | Msa0062300:intron | 55.0% | |
| AGCCGCGACTCACGTGTATA+AGG | - | chr1_2:21601440-21601459 | Msa0062300:intron | 55.0% | |
| GCCGCGACTCACGTGTATAA+GGG | - | chr1_2:21601441-21601460 | Msa0062300:intron | 55.0% | |
| ATGCCGCAGTTAGGCGGCTA+GGG | + | chr1_2:21597599-21597618 | None:intergenic | 60.0% | |
| AATGCCGCAGTTAGGCGGCT+AGG | + | chr1_2:21597600-21597619 | None:intergenic | 60.0% | |
| AGCCGCCTAACTGCGGCATT+TGG | - | chr1_2:21597600-21597619 | Msa0062300:intron | 60.0% | |
| GCCGCCTAACTGCGGCATTT+GGG | - | chr1_2:21597601-21597620 | Msa0062300:intron | 60.0% | |
| GGCCATATCCCTCGGCAATG+TGG | + | chr1_2:21597689-21597708 | None:intergenic | 60.0% | |
| CGGCTTGTAAGGTGAGGGCA+GGG | + | chr1_2:21597739-21597758 | None:intergenic | 60.0% | |
| CCTGCCCTCACCTTACAAGC+CGG | - | chr1_2:21597737-21597756 | Msa0062300:CDS | 60.0% | |
| ! | CCGACTTGTAAGGTGAGGGC+AGG | + | chr1_2:21599656-21599675 | None:intergenic | 60.0% |
| CTCCCCTAGCCGCCTAACTG+CGG | - | chr1_2:21597593-21597612 | Msa0062300:intron | 65.0% | |
| TGCCGCAGTTAGGCGGCTAG+GGG | + | chr1_2:21597598-21597617 | None:intergenic | 65.0% | |
| ! | CCGGCTTGTAAGGTGAGGGC+AGG | + | chr1_2:21597740-21597759 | None:intergenic | 65.0% |
| CGCAGTTAGGCGGCTAGGGG+AGG | + | chr1_2:21597595-21597614 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21595195 | 21602487 | 21595195 | ID=Msa0062300;Name=Msa0062300 |
| chr1_2 | mRNA | 21595195 | 21602487 | 21595195 | ID=Msa0062300-mRNA-1;Parent=Msa0062300;Name=Msa0062300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91|1|1|1|1|1|8|286|213 |
| chr1_2 | exon | 21595195 | 21595591 | 21595195 | ID=Msa0062300-mRNA-1:exon:8036;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21595742 | 21595801 | 21595742 | ID=Msa0062300-mRNA-1:exon:8035;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21596383 | 21596430 | 21596383 | ID=Msa0062300-mRNA-1:exon:8034;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21596523 | 21596611 | 21596523 | ID=Msa0062300-mRNA-1:exon:8033;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21597412 | 21597460 | 21597412 | ID=Msa0062300-mRNA-1:exon:8032;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21597733 | 21597802 | 21597733 | ID=Msa0062300-mRNA-1:exon:8031;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21600540 | 21600637 | 21600540 | ID=Msa0062300-mRNA-1:exon:8030;Parent=Msa0062300-mRNA-1 |
| chr1_2 | exon | 21602280 | 21602487 | 21602280 | ID=Msa0062300-mRNA-1:exon:8029;Parent=Msa0062300-mRNA-1 |
| chr1_2 | five_prime_UTR | 21602397 | 21602487 | 21602397 | ID=Msa0062300-mRNA-1:five_prime_utr;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21602280 | 21602396 | 21602280 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21600540 | 21600637 | 21600540 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21597733 | 21597802 | 21597733 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21597412 | 21597460 | 21597412 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21596523 | 21596611 | 21596523 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21596383 | 21596430 | 21596383 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21595742 | 21595801 | 21595742 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | CDS | 21595481 | 21595591 | 21595481 | ID=Msa0062300-mRNA-1:cds;Parent=Msa0062300-mRNA-1 |
| chr1_2 | three_prime_UTR | 21595195 | 21595480 | 21595195 | ID=Msa0062300-mRNA-1:three_prime_utr;Parent=Msa0062300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
