AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013470 MtrunA17_Chr1g0163001 93.636 550 8 4 1 548 1 525 0.0 1036
Msa0013470 MtrunA17_Chr1g0199101 55.207 605 141 22 1 548 1 532 3.61e-179 515
Msa0013470 MtrunA17_Chr1g0162971 48.094 551 135 19 1 525 1 426 1.06e-132 393
Msa0013470 MtrunA17_Chr1g0210821 41.290 620 214 18 1 545 1 545 7.76e-121 367
Msa0013470 MtrunA17_Chr7g0263941 73.301 206 27 3 34 235 23 204 3.90e-105 321
Msa0013470 MtrunA17_Chr8g0342421 74.611 193 25 1 41 233 60 228 4.00e-103 320
Msa0013470 MtrunA17_Chr2g0330171 69.159 214 39 2 16 229 22 208 1.50e-102 317
Msa0013470 MtrunA17_Chr1g0181381 76.166 193 20 3 38 229 34 201 1.81e-102 318
Msa0013470 MtrunA17_Chr8g0373541 73.545 189 26 1 41 229 31 195 7.17e-101 314
Msa0013470 MtrunA17_Chr4g0040571 74.866 187 23 1 43 229 39 201 3.90e-100 311
Msa0013470 MtrunA17_Chr4g0029521 46.402 403 123 13 40 433 35 353 3.23e-99 309
Msa0013470 MtrunA17_Chr1g0185121 62.000 250 57 5 2 242 4 224 5.30e-97 301
Msa0013470 MtrunA17_Chr1g0191991 71.429 189 30 1 41 229 61 225 1.39e-96 303
Msa0013470 MtrunA17_Chr1g0151351 62.882 229 54 5 15 237 8 211 6.21e-93 291
Msa0013470 MtrunA17_Chr2g0326381 68.617 188 34 2 43 229 32 195 4.31e-91 285
Msa0013470 MtrunA17_Chr3g0141431 64.674 184 40 2 41 223 20 179 2.40e-85 270
Msa0013470 MtrunA17_Chr2g0324991 84.211 133 21 0 76 208 1 133 7.79e-84 257
Msa0013470 MtrunA17_Chr6g0479921 62.759 145 53 1 78 221 40 184 1.79e-65 220
Msa0013470 MtrunA17_Chr8g0375521 62.759 145 52 2 78 220 38 182 3.36e-64 215
Msa0013470 MtrunA17_Chr1g0200421 34.437 151 87 4 81 219 236 386 4.02e-23 102
Msa0013470 MtrunA17_Chr2g0320341 34.868 152 85 4 79 216 227 378 5.95e-22 98.2
Msa0013470 MtrunA17_Chr3g0123941 34.899 149 89 3 79 219 120 268 1.27e-21 96.3
Msa0013470 MtrunA17_Chr8g0352011 36.301 146 83 5 83 219 166 310 1.03e-19 90.5
Msa0013470 MtrunA17_Chr5g0422571 35.811 148 82 5 88 224 106 251 2.08e-19 89.0
Msa0013470 MtrunA17_Chr1g0198651 33.544 158 89 6 75 219 95 249 3.08e-19 88.6
Msa0013470 MtrunA17_Chr7g0258011 33.333 162 90 6 83 227 176 336 3.11e-19 89.4
Msa0013470 MtrunA17_Chr4g0053341 33.775 151 90 4 78 219 69 218 6.08e-19 86.3
Msa0013470 MtrunA17_Chr1g0173841 34.932 146 85 5 83 219 215 359 1.12e-18 88.2
Msa0013470 MtrunA17_Chr8g0382121 32.432 148 89 5 80 216 109 256 3.26e-18 85.9
Msa0013470 MtrunA17_Chr2g0328921 33.562 146 87 5 83 219 138 282 5.24e-18 85.1
Msa0013470 MtrunA17_Chr2g0321291 34.694 147 84 5 83 219 133 277 1.66e-17 83.6
Msa0013470 MtrunA17_Chr4g0026521 33.333 147 86 5 83 219 118 262 9.99e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013470 AT2G02080.1 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0013470 AT2G02080.4 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0013470 AT2G02080.5 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0013470 AT2G02080.3 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0013470 AT2G02070.2 45.269 539 190 14 42 519 51 545 4.06e-115 354
Msa0013470 AT2G02070.1 45.269 539 190 14 42 519 51 545 4.06e-115 354
Msa0013470 AT1G14580.1 44.141 512 186 12 2 508 20 436 1.78e-112 343
Msa0013470 AT1G14580.2 44.141 512 186 12 2 508 20 436 1.78e-112 343
Msa0013470 AT1G14580.3 44.336 512 185 13 2 508 34 450 2.77e-112 343
Msa0013470 AT2G02080.6 46.120 451 167 11 91 511 1 405 6.31e-112 340
Msa0013470 AT2G02080.2 46.120 451 167 11 91 511 1 405 6.31e-112 340
Msa0013470 AT3G50700.1 70.142 211 36 2 22 229 10 196 8.30e-103 317
Msa0013470 AT5G66730.1 71.429 203 31 2 31 230 17 195 1.62e-100 313
Msa0013470 AT1G55110.3 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0013470 AT1G55110.1 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0013470 AT1G55110.2 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0013470 AT1G03840.1 72.396 192 27 2 38 229 38 203 3.05e-98 307
Msa0013470 AT3G13810.4 75.661 189 21 2 42 229 69 233 5.65e-98 307
Msa0013470 AT3G13810.1 75.661 189 21 2 42 229 69 233 5.65e-98 307
Msa0013470 AT3G13810.6 75.661 189 21 2 42 229 50 214 7.18e-98 306
Msa0013470 AT3G13810.5 75.661 189 21 2 42 229 64 228 8.37e-98 306
Msa0013470 AT1G03840.2 83.333 156 26 0 74 229 46 201 1.17e-97 306
Msa0013470 AT5G03150.1 69.668 211 33 4 43 250 53 235 1.78e-97 305
Msa0013470 AT3G13810.3 87.097 155 19 1 76 229 66 220 3.85e-97 304
Msa0013470 AT3G13810.2 87.097 155 19 1 76 229 80 234 4.78e-97 304
Msa0013470 AT3G45260.2 72.251 191 28 2 43 232 39 205 7.50e-96 299
Msa0013470 AT3G45260.1 72.251 191 28 2 43 232 39 205 7.50e-96 299
Msa0013470 AT5G44160.1 71.875 192 28 2 38 229 34 199 5.21e-95 298
Msa0013470 AT5G44160.2 80.120 166 31 1 76 239 7 172 1.54e-94 295
Msa0013470 AT4G02670.1 84.967 153 22 1 78 229 64 216 2.43e-94 294
Msa0013470 AT4G02670.2 84.967 153 22 1 78 229 66 218 2.67e-94 294
Msa0013470 AT1G25250.1 63.014 146 51 2 78 220 21 166 9.51e-66 218
Msa0013470 AT2G01940.1 63.946 147 51 2 78 222 55 201 1.21e-65 220
Msa0013470 AT1G25250.3 63.014 146 51 2 78 220 44 189 1.23e-65 218
Msa0013470 AT1G68130.1 56.395 172 65 3 78 239 52 223 2.79e-65 218
Msa0013470 AT2G01940.3 62.838 148 52 3 78 222 55 202 4.49e-62 211
Msa0013470 AT1G68130.2 54.745 137 52 3 113 239 1 137 4.47e-45 162
Msa0013470 AT2G01940.2 64.286 112 38 2 113 222 1 112 7.30e-45 162
Msa0013470 AT1G25250.2 62.162 111 39 2 113 220 1 111 1.97e-44 159
Msa0013470 AT1G34370.3 33.333 153 88 3 81 219 19 171 6.36e-22 96.7
Msa0013470 AT1G34370.2 33.333 153 88 3 81 219 229 381 1.43e-21 98.6
Msa0013470 AT1G34370.1 33.333 153 88 3 81 219 229 381 1.43e-21 98.6
Msa0013470 AT5G22890.1 31.373 153 91 3 81 219 202 354 6.57e-21 95.1
Msa0013470 AT3G20880.1 31.737 167 98 6 83 234 243 408 5.41e-19 89.7
Msa0013470 AT1G51220.1 32.192 146 89 4 83 219 165 309 2.02e-18 87.0
Msa0013470 AT3G57670.1 34.247 146 86 5 83 219 204 348 4.08e-18 87.0
Msa0013470 AT1G13290.1 34.899 149 83 6 88 224 93 239 7.24e-18 85.1
Msa0013470 AT1G34790.1 35.333 150 85 6 80 219 129 276 1.70e-17 84.0
Msa0013470 AT1G08290.1 31.163 215 120 8 16 219 115 312 5.54e-17 82.8

Find 96 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTGTTGATTCCAATTT+AGG 0.091214 1_1:-20833146 None:intergenic
CTCCTTGTTGGGTGCTTATT+TGG 0.111823 1_1:-20832293 None:intergenic
CGAAGAAGTTGTGTTGTTAT+TGG 0.199081 1_1:-20832571 None:intergenic
ATTAAATGATGTTCATATTT+TGG 0.212431 1_1:-20832360 None:intergenic
TTTGTTGCCATTAGGGTCTT+TGG 0.213274 1_1:-20828788 None:intergenic
GGAAAGAAGCTTAGGTTAAA+AGG 0.236965 1_1:-20832603 None:intergenic
TCCATTGTTGATCTTCAAAA+AGG 0.237827 1_1:-20833176 None:intergenic
TTCATCATCTACACCTTTCT+TGG 0.248087 1_1:+20828172 Msa0013470:CDS
CACAAATAAACCTTTCTCTT+TGG 0.255380 1_1:-20828923 None:intergenic
GAACAACATGGATCCTAAAT+TGG 0.267054 1_1:+20833133 Msa0013470:CDS
AAATCTGTTTGTTGCCATTA+GGG 0.267384 1_1:-20828795 None:intergenic
CAAATCTGTTTGTTGCCATT+AGG 0.293552 1_1:-20828796 None:intergenic
TCCTTGTTGGGTGCTTATTT+GGG 0.302496 1_1:-20832292 None:intergenic
AGGTACTTGCATGGTGTTCC+AGG 0.328858 1_1:-20828305 None:intergenic
GTGTTGTTACCATTGGTATT+TGG 0.331507 1_1:-20832624 None:intergenic
GCTTAATATGTTGTTGTTTG+TGG 0.341536 1_1:-20832316 None:intergenic
CTAGTTGGTAATTTGTGCTT+TGG 0.354162 1_1:+20832990 Msa0013470:CDS
GTATGTGAAGTGTGTCAAAA+AGG 0.363879 1_1:+20828818 Msa0013470:CDS
TCTTGTTGGAAAGTTTGATT+TGG 0.366501 1_1:-20832468 None:intergenic
TCCACAAACCACATGAGTTT+AGG 0.377863 1_1:+20832264 Msa0013470:CDS
GTGATAGTTTCATCACTCAT+AGG 0.391861 1_1:+20832166 Msa0013470:CDS
GTTGGTAATTTGTGCTTTGG+AGG 0.397322 1_1:+20832993 Msa0013470:CDS
TGTTGTTTGTGGCTCCTTGT+TGG 0.400951 1_1:-20832305 None:intergenic
AGTGCTATCACCTCTGCATC+TGG 0.401274 1_1:-20828761 None:intergenic
TGGTGAACACATGTTGGTTC+TGG 0.406411 1_1:-20828947 None:intergenic
ATGCAACTTCCTGATCTTCA+AGG 0.407756 1_1:+20832543 Msa0013470:CDS
ATTCTAAGACTTGTGGTACT+AGG 0.408246 1_1:+20829098 Msa0013470:CDS
GTTGTTTGTGGCTCCTTGTT+GGG 0.418545 1_1:-20832304 None:intergenic
TTGGTATTTCCTTGAAGATC+AGG 0.421140 1_1:-20832552 None:intergenic
AAAAGTGGTTTGAAATTGAA+TGG 0.422881 1_1:+20828489 Msa0013470:CDS
AGGATCAGATAAATTGACTT+TGG 0.426316 1_1:+20833013 Msa0013470:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_1:+20829068 Msa0013470:CDS
GTCCTTGATGAAGGTCTTGT+TGG 0.436312 1_1:-20832482 None:intergenic
ACCTAAACTCATGTGGTTTG+TGG 0.441992 1_1:-20832265 None:intergenic
TGGTATTTGGAAAGAAGCTT+AGG 0.442631 1_1:-20832611 None:intergenic
GTGTTCACCATGACCCTTCA+AGG 0.444680 1_1:+20828960 Msa0013470:CDS
CATGTTGTTCATTGCACTCA+TGG 0.444733 1_1:-20833120 None:intergenic
ATATATGATAACAATAATCT+TGG 0.452803 1_1:+20832909 Msa0013470:CDS
TTGATGAACTCTCTTGGTAA+TGG 0.453657 1_1:+20832876 Msa0013470:CDS
CATGACCCTTCAAGGGCTCT+TGG 0.457066 1_1:+20828968 Msa0013470:CDS
CCCTTCCAACATGAACCCTT+TGG 0.462526 1_1:+20832227 Msa0013470:CDS
TCTTGTCTGATTTCCAAGAA+AGG 0.471370 1_1:-20828185 None:intergenic
AGGGCTCTTGGTGACCTCAC+TGG 0.481216 1_1:+20828980 Msa0013470:CDS
CATGGTTTGATGAACTCTCT+TGG 0.494225 1_1:+20832870 Msa0013470:CDS
GCCAAAGGGTTCATGTTGGA+AGG 0.499818 1_1:-20832228 None:intergenic
ACTATCTCCAAAGACCCTAA+TGG 0.500143 1_1:+20828781 Msa0013470:CDS
GAAGAGGACACAATTTGCCT+TGG 0.500777 1_1:+20828873 Msa0013470:CDS
ATGCATTGTGTTGTTACCAT+TGG 0.504019 1_1:-20832631 None:intergenic
TTGAGAATTGTCCTTGATGA+AGG 0.510385 1_1:-20832491 None:intergenic
TAACAAAGAGCCAAAGAGAA+AGG 0.517289 1_1:+20828913 Msa0013470:CDS
TCATCACAACAAAGTCTAGT+TGG 0.517423 1_1:+20832975 Msa0013470:CDS
GATGATGATGATTGATGTAA+AGG 0.518086 1_1:-20832387 None:intergenic
TTCTAAGACTTGTGGTACTA+GGG 0.522062 1_1:+20829099 Msa0013470:CDS
AAAGTGGTTTGAAATTGAAT+GGG 0.536574 1_1:+20828490 Msa0013470:CDS
AAACAACTTCATCTTCATCA+TGG 0.542991 1_1:+20832516 Msa0013470:CDS
ATGAGTAGTCATAGTGGTGG+AGG 0.544180 1_1:+20833068 Msa0013470:CDS
TGGTCAGTTTCACAATGTTG+AGG 0.562544 1_1:+20832929 Msa0013470:CDS
TAACAACACAACTTCTTCGT+CGG 0.566297 1_1:+20832575 Msa0013470:CDS
AGCTTCTTTCCAAATACCAA+TGG 0.568397 1_1:+20832615 Msa0013470:CDS
TTCCAACAAGACCTTCATCA+AGG 0.568775 1_1:+20832480 Msa0013470:CDS
CATCATCCTCATCAACATGA+AGG 0.570900 1_1:+20832681 Msa0013470:CDS
TATATATAGATATACATAGA+GGG 0.571167 1_1:-20828523 None:intergenic
CAAGAGCCCTTGAAGGGTCA+TGG 0.571189 1_1:-20828967 None:intergenic
TGATAGTTTCATCACTCATA+GGG 0.573616 1_1:+20832167 Msa0013470:CDS
TTTGGATCAGTGATGAAGAA+AGG 0.573682 1_1:-20832450 None:intergenic
CCAAAGGGTTCATGTTGGAA+GGG 0.582486 1_1:-20832227 None:intergenic
AAAATAGATGAGTTGCCAAA+GGG 0.582651 1_1:-20832242 None:intergenic
AGGTCACCAAGAGCCCTTGA+AGG 0.583044 1_1:-20828974 None:intergenic
GAAAATAGATGAGTTGCCAA+AGG 0.595195 1_1:-20832243 None:intergenic
GTGTACAAGGAATATTACCT+AGG 0.598064 1_1:-20832338 None:intergenic
TCAGTTTCACAATGTTGAGG+AGG 0.598972 1_1:+20832932 Msa0013470:CDS
AACATGAGTAGTCATAGTGG+TGG 0.599920 1_1:+20833065 Msa0013470:CDS
AGACTTTGTTGTGATGATGA+TGG 0.601984 1_1:-20832969 None:intergenic
GGGATAGACCTAAACTCATG+TGG 0.602066 1_1:-20832272 None:intergenic
AACAACAACATATTAAGCCT+AGG 0.605686 1_1:+20832321 Msa0013470:CDS
AATGCATAAAGGTACTTGCA+TGG 0.607082 1_1:-20828314 None:intergenic
AAAGCTCATTCTAAGACTTG+TGG 0.613886 1_1:+20829091 Msa0013470:CDS
AGTTGCCAAAGGGTTCATGT+TGG 0.620508 1_1:-20832232 None:intergenic
TGTTCACCATGACCCTTCAA+GGG 0.621698 1_1:+20828961 Msa0013470:CDS
CCTAAATTGGAATCAACACA+AGG 0.622024 1_1:+20833146 Msa0013470:CDS
GAAAACAGATCCAGATGCAG+AGG 0.622348 1_1:+20828751 Msa0013470:intron
TCCCAAATAAGCACCCAACA+AGG 0.624001 1_1:+20832291 Msa0013470:CDS
ATCAGTGATGAAGAAAGGTG+AGG 0.628094 1_1:-20832445 None:intergenic
AATTTGCAACTACATAGAAG+AGG 0.631288 1_1:+20828857 Msa0013470:CDS
CATGAGTGCAATGAACAACA+TGG 0.631457 1_1:+20833121 Msa0013470:CDS
AGCAGTTGATGAAGCATCTG+TGG 0.636040 1_1:-20828243 None:intergenic
ACTGTGGTACTCTCTTCTCA+AGG 0.636169 1_1:+20829134 Msa0013470:CDS
ACGACTATCAACAACAGCAA+TGG 0.638790 1_1:+20832816 Msa0013470:CDS
GGTCACCAAGAGCCCTTGAA+GGG 0.641915 1_1:-20828973 None:intergenic
GAACAACATCAACATCTACA+TGG 0.645232 1_1:+20832852 Msa0013470:CDS
AGAAACATGAGTAGTCATAG+TGG 0.649943 1_1:+20833062 Msa0013470:CDS
AATGCAGTTGCCGACATGTG+TGG 0.670626 1_1:-20832759 None:intergenic
GTTGTCTTCGCCACACATGT+CGG 0.684664 1_1:+20832749 Msa0013470:CDS
GGGTCATGGTGAACACATGT+TGG 0.698022 1_1:-20828953 None:intergenic
AGTGCTTCTTAATTCCAGTG+AGG 0.713073 1_1:-20828994 None:intergenic
AGGGAGTATAGATGTGACTG+TGG 0.716730 1_1:+20829118 Msa0013470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTGCATATAAAAAAAT+TGG - chr1_1:20829175-20829194 None:intergenic 10.0%
!! TCATCAATATTATTAAAATT+TGG + chr1_1:20829480-20829499 Msa0013470:intron 10.0%
!! TATTTCATAAAAACAATTAT+GGG - chr1_1:20830863-20830882 None:intergenic 10.0%
!! ATATTTCATAAAAACAATTA+TGG - chr1_1:20830864-20830883 None:intergenic 10.0%
!!! AAAGAATTAAAATATTCTTT+TGG + chr1_1:20831218-20831237 Msa0013470:intron 10.0%
!!! TAATTCTAAGATAATTAATT+TGG - chr1_1:20831630-20831649 None:intergenic 10.0%
!! TTAATTATATACTAATCAAA+AGG + chr1_1:20831687-20831706 Msa0013470:intron 10.0%
!! TTAAAATGTATATATTGAAA+TGG + chr1_1:20831791-20831810 Msa0013470:intron 10.0%
!! AAAAATTCAAGCTTAATTTA+GGG - chr1_1:20828439-20828458 None:intergenic 15.0%
!! AAAAAATTCAAGCTTAATTT+AGG - chr1_1:20828440-20828459 None:intergenic 15.0%
!! TATATATAGATATACATAGA+GGG - chr1_1:20828526-20828545 None:intergenic 15.0%
!!! TTTTTTTTGTTTGTTTTGAA+TGG - chr1_1:20828669-20828688 None:intergenic 15.0%
!!! GTGTAACTTTTTAAATTTTT+TGG + chr1_1:20828698-20828717 Msa0013470:intron 15.0%
!!! GATTAAAATTTGCTTAAAAT+AGG + chr1_1:20829261-20829280 Msa0013470:intron 15.0%
!!! CAATTTTAATATTAACGAAA+TGG - chr1_1:20829445-20829464 None:intergenic 15.0%
!!! TATTTTTCTATCTCTTATAA+TGG + chr1_1:20830406-20830425 Msa0013470:intron 15.0%
!! TTTAATATAATAACCATACA+CGG + chr1_1:20831103-20831122 Msa0013470:intron 15.0%
!! GTTTATCCAAAATATAATTT+GGG - chr1_1:20831442-20831461 None:intergenic 15.0%
!! AGTTTATCCAAAATATAATT+TGG - chr1_1:20831443-20831462 None:intergenic 15.0%
!!! AAGATAATTAATTTGGATAA+TGG - chr1_1:20831623-20831642 None:intergenic 15.0%
!!! TTAGAGTTTGATTTTTTTTA+CGG - chr1_1:20831939-20831958 None:intergenic 15.0%
!!! TTGTAAAAAATTTTGCATTA+GGG - chr1_1:20832060-20832079 None:intergenic 15.0%
!!! ATTGTAAAAAATTTTGCATT+AGG - chr1_1:20832061-20832080 None:intergenic 15.0%
!!! ATTAAATGATGTTCATATTT+TGG - chr1_1:20832363-20832382 None:intergenic 15.0%
!! ATATATGATAACAATAATCT+TGG + chr1_1:20832909-20832928 Msa0013470:CDS 15.0%
!! AAATAATGAAGAATGCATAA+AGG - chr1_1:20828328-20828347 None:intergenic 20.0%
!!! AGCTTGAATTTTTTTAGTAT+AGG + chr1_1:20828446-20828465 Msa0013470:intron 20.0%
!!! GCTTGAATTTTTTTAGTATA+GGG + chr1_1:20828447-20828466 Msa0013470:intron 20.0%
!! GTATATATAGATATACATAG+AGG - chr1_1:20828527-20828546 None:intergenic 20.0%
!!! TAAAATTTGCTTAAAATAGG+AGG + chr1_1:20829264-20829283 Msa0013470:intron 20.0%
!! TAAAAAAATAGATCAACCAT+AGG - chr1_1:20829401-20829420 None:intergenic 20.0%
!!! TAGATTGAACCAAATTTTTT+TGG - chr1_1:20829591-20829610 None:intergenic 20.0%
!!! TCTATTGATGCATTTTAATT+TGG + chr1_1:20829607-20829626 Msa0013470:intron 20.0%
!!! ACGAATGTAATTTAAAACTT+TGG - chr1_1:20829635-20829654 None:intergenic 20.0%
!! TTACTCATATTTACTATTCT+TGG - chr1_1:20829798-20829817 None:intergenic 20.0%
!! AAAATGAAAAATAGCTAACA+AGG + chr1_1:20829829-20829848 Msa0013470:intron 20.0%
!! TCGTAAACAAAAGTTAAAAT+AGG + chr1_1:20829868-20829887 Msa0013470:intron 20.0%
!! CGTAAACAAAAGTTAAAATA+GGG + chr1_1:20829869-20829888 Msa0013470:intron 20.0%
!!! AAAATAAGTTGAGATTGTTT+TGG - chr1_1:20830048-20830067 None:intergenic 20.0%
!!! TTATTTTTTTTGTTGTGCTT+TGG + chr1_1:20830061-20830080 Msa0013470:intron 20.0%
!!! TATTTTTTTTGTTGTGCTTT+GGG + chr1_1:20830062-20830081 Msa0013470:intron 20.0%
!! GAAAAAATTCATCATAATGA+AGG - chr1_1:20830243-20830262 None:intergenic 20.0%
!! CATCATACAATAGATTATAA+AGG - chr1_1:20830312-20830331 None:intergenic 20.0%
!!! TTTTTCTCTCTCAAATTTTA+CGG + chr1_1:20830368-20830387 Msa0013470:intron 20.0%
!! TTCACAAGAATTATATATGA+TGG + chr1_1:20830566-20830585 Msa0013470:intron 20.0%
!! AATAATCAAAACCACAAAAT+GGG - chr1_1:20830640-20830659 None:intergenic 20.0%
!! CATTAAACAATGAAAAAAGA+GGG - chr1_1:20830780-20830799 None:intergenic 20.0%
!!! AATTCTCTACATACTTTTTT+GGG + chr1_1:20830894-20830913 Msa0013470:intron 20.0%
!! TTAATATAATAACCATACAC+GGG + chr1_1:20831104-20831123 Msa0013470:intron 20.0%
!! AAAAGTGAGATAAACAATTA+AGG - chr1_1:20831169-20831188 None:intergenic 20.0%
!! TCTCTCATTTCTAATAAATT+TGG - chr1_1:20831863-20831882 None:intergenic 20.0%
!!! TAGAGTTTGATTTTTTTTAC+GGG - chr1_1:20831938-20831957 None:intergenic 20.0%
!!! TGATTTCTTCTTTTTTTCTG+AGG - chr1_1:20828284-20828303 None:intergenic 25.0%
! AAAAAAAGAAGAAATCAACC+TGG + chr1_1:20828287-20828306 Msa0013470:CDS 25.0%
! TCCAGAAATATTTCACAAAA+GGG - chr1_1:20828384-20828403 None:intergenic 25.0%
! ATCCAGAAATATTTCACAAA+AGG - chr1_1:20828385-20828404 None:intergenic 25.0%
!! CAAGTTTTTCTAATGAAAAG+TGG + chr1_1:20828474-20828493 Msa0013470:CDS 25.0%
!! AAAAGTGGTTTGAAATTGAA+TGG + chr1_1:20828489-20828508 Msa0013470:CDS 25.0%
!! AAAGTGGTTTGAAATTGAAT+GGG + chr1_1:20828490-20828509 Msa0013470:CDS 25.0%
! ATGTTAATACACATTACCTA+TGG + chr1_1:20829382-20829401 Msa0013470:intron 25.0%
! AACAAAACAAAAAGCTTCAA+TGG - chr1_1:20829900-20829919 None:intergenic 25.0%
! GGATGCAATTATATGTATTA+TGG - chr1_1:20830291-20830310 None:intergenic 25.0%
! AATTATCTCGCATAACTTAA+TGG - chr1_1:20830349-20830368 None:intergenic 25.0%
!! ATGTTTTCTCAAAGATTTTC+CGG + chr1_1:20830511-20830530 Msa0013470:intron 25.0%
! ATACGATCGTACTATTAAAA+AGG - chr1_1:20830547-20830566 None:intergenic 25.0%
! TTATATATGATGGTAAGAAG+TGG + chr1_1:20830576-20830595 Msa0013470:intron 25.0%
! ATAATCAAAACCACAAAATG+GGG - chr1_1:20830639-20830658 None:intergenic 25.0%
! CAATAATCAAAACCACAAAA+TGG - chr1_1:20830641-20830660 None:intergenic 25.0%
!!! CATTTTGTGGTTTTGATTAT+TGG + chr1_1:20830639-20830658 Msa0013470:intron 25.0%
! GCATTAAACAATGAAAAAAG+AGG - chr1_1:20830781-20830800 None:intergenic 25.0%
! AAAGTATGTAGAGAATTGTA+GGG - chr1_1:20830891-20830910 None:intergenic 25.0%
!! AAAAGTATGTAGAGAATTGT+AGG - chr1_1:20830892-20830911 None:intergenic 25.0%
!!! CAATTCTCTACATACTTTTT+TGG + chr1_1:20830893-20830912 Msa0013470:intron 25.0%
! ATATTAAATGTCAAGCATGT+AGG - chr1_1:20831091-20831110 None:intergenic 25.0%
!!! GAAAGATAGACTTTTAAGTA+AGG - chr1_1:20831511-20831530 None:intergenic 25.0%
! TATACTAATCAAAAGGTTCA+AGG + chr1_1:20831694-20831713 Msa0013470:intron 25.0%
!!! AGAGTTTGATTTTTTTTACG+GGG - chr1_1:20831937-20831956 None:intergenic 25.0%
!!! TGGAAATAACAAGTTTGTTA+TGG - chr1_1:20832125-20832144 None:intergenic 25.0%
!!! AAATTGACTTTGGATTTTCT+TGG + chr1_1:20833023-20833042 Msa0013470:CDS 25.0%
!!! CTTTTTTTCTGAGGAACTAA+AGG - chr1_1:20828275-20828294 None:intergenic 30.0%
! ACCCTTTTGTGAAATATTTC+TGG + chr1_1:20828380-20828399 Msa0013470:intron 30.0%
!!! TTTGTTTGTTTTGAATGGCA+TGG - chr1_1:20828664-20828683 None:intergenic 30.0%
! AAATCTGTTTGTTGCCATTA+GGG - chr1_1:20828798-20828817 None:intergenic 30.0%
TATGTGAAGTGTGTCAAAAA+GGG + chr1_1:20828819-20828838 Msa0013470:CDS 30.0%
AATTTGCAACTACATAGAAG+AGG + chr1_1:20828857-20828876 Msa0013470:CDS 30.0%
CACAAATAAACCTTTCTCTT+TGG - chr1_1:20828926-20828945 None:intergenic 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr1_1:20829068-20829087 Msa0013470:CDS 30.0%
TGCAAAACCAGTTTCAATTA+TGG - chr1_1:20829292-20829311 None:intergenic 30.0%
!! ACAAAAGAGTATCAACTAGA+GGG - chr1_1:20829323-20829342 None:intergenic 30.0%
!! TACAAAAGAGTATCAACTAG+AGG - chr1_1:20829324-20829343 None:intergenic 30.0%
!!! GAACCAAATTTTTTTGGTGT+TGG - chr1_1:20829585-20829604 None:intergenic 30.0%
AACAAGGTTGTTGAAGAAAA+TGG + chr1_1:20829845-20829864 Msa0013470:intron 30.0%
!! TTGTTTTGTTAGTTTATGCG+TGG + chr1_1:20829910-20829929 Msa0013470:intron 30.0%
!! TGTTTTGTTAGTTTATGCGT+GGG + chr1_1:20829911-20829930 Msa0013470:intron 30.0%
AATGGGAATAAGCATAAAAG+TGG - chr1_1:20830095-20830114 None:intergenic 30.0%
TCGTTTAACAACATGTGAAT+GGG - chr1_1:20830112-20830131 None:intergenic 30.0%
!!! GGTTTTGTTTTCTTTTGTCT+TGG + chr1_1:20830177-20830196 Msa0013470:intron 30.0%
! TCAAATTTTACGGTCAACTA+GGG + chr1_1:20830378-20830397 Msa0013470:intron 30.0%
CTATCTCTTATAATGGTCAA+TGG + chr1_1:20830413-20830432 Msa0013470:intron 30.0%
! TGTTTTCTCAAAGATTTTCC+GGG + chr1_1:20830512-20830531 Msa0013470:intron 30.0%
!! TTAAAAAGGTGCTATATTCC+CGG - chr1_1:20830533-20830552 None:intergenic 30.0%
ATTAATGCAAACTGTCTCAT+GGG - chr1_1:20830607-20830626 None:intergenic 30.0%
AATTAATGCAAACTGTCTCA+TGG - chr1_1:20830608-20830627 None:intergenic 30.0%
AGACAGTTTGCATTAATTGA+GGG + chr1_1:20830610-20830629 Msa0013470:intron 30.0%
! TGTTGGTGTGTATAAGATTT+TGG + chr1_1:20830740-20830759 Msa0013470:intron 30.0%
ATCACACAATACATCTATCT+TGG + chr1_1:20830990-20831009 Msa0013470:intron 30.0%
CATTAAATCTGGGCAATTAA+TGG - chr1_1:20831018-20831037 None:intergenic 30.0%
TAGGATTGATCCTCAAAAAA+GGG - chr1_1:20831072-20831091 None:intergenic 30.0%
GCAATATGCTTCATCTAATT+GGG - chr1_1:20831341-20831360 None:intergenic 30.0%
TGCAATATGCTTCATCTAAT+TGG - chr1_1:20831342-20831361 None:intergenic 30.0%
AGTATATTGCATGCATGTAA+GGG + chr1_1:20831378-20831397 Msa0013470:intron 30.0%
ATAGTGTAATAAGTCGATCA+TGG + chr1_1:20831408-20831427 Msa0013470:intron 30.0%
! AGGTCACCCAAATTATATTT+TGG + chr1_1:20831433-20831452 Msa0013470:intron 30.0%
! CTAATAAGGAGTGTGAAAAA+TGG - chr1_1:20831478-20831497 None:intergenic 30.0%
AAGGTGGTGTAATACTAATA+AGG - chr1_1:20831492-20831511 None:intergenic 30.0%
!! AGATAGACTTTTAAGTAAGG+TGG - chr1_1:20831508-20831527 None:intergenic 30.0%
AAGGAGATAAAATATGTCCT+AGG - chr1_1:20831553-20831572 None:intergenic 30.0%
TCTAAAGGGAAGAAAGAAAA+AGG - chr1_1:20831572-20831591 None:intergenic 30.0%
! TTTTTCTTTCTTCCCTTTAG+AGG + chr1_1:20831571-20831590 Msa0013470:intron 30.0%
TGAGTGAATAAACCTCTAAA+GGG - chr1_1:20831586-20831605 None:intergenic 30.0%
TTGAGTGAATAAACCTCTAA+AGG - chr1_1:20831587-20831606 None:intergenic 30.0%
TTTAGAGGTTTATTCACTCA+AGG + chr1_1:20831586-20831605 Msa0013470:intron 30.0%
CCTGCAAAAAATCATAACAT+TGG - chr1_1:20832145-20832164 None:intergenic 30.0%
!!! CCAATGTTATGATTTTTTGC+AGG + chr1_1:20832142-20832161 Msa0013470:intron 30.0%
TGATAGTTTCATCACTCATA+GGG + chr1_1:20832167-20832186 Msa0013470:CDS 30.0%
AAAATAGATGAGTTGCCAAA+GGG - chr1_1:20832245-20832264 None:intergenic 30.0%
!! GCTTAATATGTTGTTGTTTG+TGG - chr1_1:20832319-20832338 None:intergenic 30.0%
AACAACAACATATTAAGCCT+AGG + chr1_1:20832321-20832340 Msa0013470:CDS 30.0%
!!! TGTTCATATTTTGGTGTACA+AGG - chr1_1:20832354-20832373 None:intergenic 30.0%
! GATGATGATGATTGATGTAA+AGG - chr1_1:20832390-20832409 None:intergenic 30.0%
CAATCATCATCATCATCATT+TGG + chr1_1:20832396-20832415 Msa0013470:CDS 30.0%
TCTTGTTGGAAAGTTTGATT+TGG - chr1_1:20832471-20832490 None:intergenic 30.0%
AAACAACTTCATCTTCATCA+TGG + chr1_1:20832516-20832535 Msa0013470:CDS 30.0%
! AGGATCAGATAAATTGACTT+TGG + chr1_1:20833013-20833032 Msa0013470:CDS 30.0%
TTCATCATCTACACCTTTCT+TGG + chr1_1:20828172-20828191 Msa0013470:CDS 35.0%
TCTTGTCTGATTTCCAAGAA+AGG - chr1_1:20828188-20828207 None:intergenic 35.0%
!! AATGCATAAAGGTACTTGCA+TGG - chr1_1:20828317-20828336 None:intergenic 35.0%
! CAAATCTGTTTGTTGCCATT+AGG - chr1_1:20828799-20828818 None:intergenic 35.0%
GTATGTGAAGTGTGTCAAAA+AGG + chr1_1:20828818-20828837 Msa0013470:CDS 35.0%
TGTGTCAAAAAGGGTTTCAA+AGG + chr1_1:20828828-20828847 Msa0013470:CDS 35.0%
GTGTCAAAAAGGGTTTCAAA+GGG + chr1_1:20828829-20828848 Msa0013470:CDS 35.0%
TAACAAAGAGCCAAAGAGAA+AGG + chr1_1:20828913-20828932 Msa0013470:CDS 35.0%
!! AAGCACTTTTCTAGAAAGCA+TGG + chr1_1:20829010-20829029 Msa0013470:CDS 35.0%
!! AAAGCTCATTCTAAGACTTG+TGG + chr1_1:20829091-20829110 Msa0013470:CDS 35.0%
!! ATTCTAAGACTTGTGGTACT+AGG + chr1_1:20829098-20829117 Msa0013470:CDS 35.0%
!! TTCTAAGACTTGTGGTACTA+GGG + chr1_1:20829099-20829118 Msa0013470:CDS 35.0%
GACAATGCATAGAATATGCA+AGG + chr1_1:20829540-20829559 Msa0013470:intron 35.0%
!!! AAATTTTTTTGGTGTTGGCC+GGG - chr1_1:20829580-20829599 None:intergenic 35.0%
!!! CAAATTTTTTTGGTGTTGGC+CGG - chr1_1:20829581-20829600 None:intergenic 35.0%
TGTGTGTGTTACAATCTTCA+TGG - chr1_1:20829748-20829767 None:intergenic 35.0%
AATCCATAAGAAACTAGGTG+AGG - chr1_1:20829775-20829794 None:intergenic 35.0%
CTTGGAATCCATAAGAAACT+AGG - chr1_1:20829780-20829799 None:intergenic 35.0%
ACGTGAGTACACTGTATAAA+TGG + chr1_1:20829978-20829997 Msa0013470:intron 35.0%
CGTGAGTACACTGTATAAAT+GGG + chr1_1:20829979-20829998 Msa0013470:intron 35.0%
GTGAGTACACTGTATAAATG+GGG + chr1_1:20829980-20829999 Msa0013470:intron 35.0%
CTCGTTTAACAACATGTGAA+TGG - chr1_1:20830113-20830132 None:intergenic 35.0%
AATCTATTGTATGATGCAGC+TGG + chr1_1:20830316-20830335 Msa0013470:intron 35.0%
! CTCAAATTTTACGGTCAACT+AGG + chr1_1:20830377-20830396 Msa0013470:intron 35.0%
GAGACAGTTTGCATTAATTG+AGG + chr1_1:20830609-20830628 Msa0013470:intron 35.0%
!! AAGATTTTGGCATAATCCCA+TGG + chr1_1:20830753-20830772 Msa0013470:intron 35.0%
!! AGATTTTGGCATAATCCCAT+GGG + chr1_1:20830754-20830773 Msa0013470:intron 35.0%
!!! TCTCTACATACTTTTTTGGG+TGG + chr1_1:20830897-20830916 Msa0013470:intron 35.0%
AAACACATTGTCATTGCATC+TGG + chr1_1:20830967-20830986 Msa0013470:intron 35.0%
ATTGCCCAGATTTAATGTCA+CGG + chr1_1:20831021-20831040 Msa0013470:intron 35.0%
GTAGGATTGATCCTCAAAAA+AGG - chr1_1:20831073-20831092 None:intergenic 35.0%
ATCTATACTTTACCCGTGTA+TGG - chr1_1:20831119-20831138 None:intergenic 35.0%
TCTTTATGTAGTCACTAGCT+AGG + chr1_1:20831257-20831276 Msa0013470:intron 35.0%
TCACTAGCTAGGTTCTTATT+TGG + chr1_1:20831268-20831287 Msa0013470:intron 35.0%
GAGTATATTGCATGCATGTA+AGG + chr1_1:20831377-20831396 Msa0013470:intron 35.0%
GTAATAAGTCGATCATGGTA+AGG + chr1_1:20831413-20831432 Msa0013470:intron 35.0%
AAAATATGTCCTAGGTGTGA+TGG - chr1_1:20831545-20831564 None:intergenic 35.0%
! ATTATTTCTCACGCAGACAA+TGG + chr1_1:20831646-20831665 Msa0013470:intron 35.0%
ACCCTATACTAATGTCTGAA+CGG + chr1_1:20831816-20831835 Msa0013470:intron 35.0%
ACCGTTCAGACATTAGTATA+GGG - chr1_1:20831820-20831839 None:intergenic 35.0%
TACCGTTCAGACATTAGTAT+AGG - chr1_1:20831821-20831840 None:intergenic 35.0%
ATGTGTGTTTGCAGTATGAA+TGG - chr1_1:20831996-20832015 None:intergenic 35.0%
ATTCATACTGCAAACACACA+TGG + chr1_1:20831995-20832014 Msa0013470:intron 35.0%
GTGATAGTTTCATCACTCAT+AGG + chr1_1:20832166-20832185 Msa0013470:CDS 35.0%
GAAAATAGATGAGTTGCCAA+AGG - chr1_1:20832246-20832265 None:intergenic 35.0%
GTGTACAAGGAATATTACCT+AGG - chr1_1:20832341-20832360 None:intergenic 35.0%
TTTGGATCAGTGATGAAGAA+AGG - chr1_1:20832453-20832472 None:intergenic 35.0%
TTGAGAATTGTCCTTGATGA+AGG - chr1_1:20832494-20832513 None:intergenic 35.0%
TTGGTATTTCCTTGAAGATC+AGG - chr1_1:20832555-20832574 None:intergenic 35.0%
! CGAAGAAGTTGTGTTGTTAT+TGG - chr1_1:20832574-20832593 None:intergenic 35.0%
TAACAACACAACTTCTTCGT+CGG + chr1_1:20832575-20832594 Msa0013470:CDS 35.0%
GGAAAGAAGCTTAGGTTAAA+AGG - chr1_1:20832606-20832625 None:intergenic 35.0%
TGGTATTTGGAAAGAAGCTT+AGG - chr1_1:20832614-20832633 None:intergenic 35.0%
AGCTTCTTTCCAAATACCAA+TGG + chr1_1:20832615-20832634 Msa0013470:CDS 35.0%
! GTGTTGTTACCATTGGTATT+TGG - chr1_1:20832627-20832646 None:intergenic 35.0%
! ATGCATTGTGTTGTTACCAT+TGG - chr1_1:20832634-20832653 None:intergenic 35.0%
GAAAAACCTTCATGTTGATG+AGG - chr1_1:20832690-20832709 None:intergenic 35.0%
! GAAGGTTTTTCTTCACTCTT+TGG + chr1_1:20832699-20832718 Msa0013470:CDS 35.0%
CTTCAAAAAGCTGCTCAAAT+TGG + chr1_1:20832783-20832802 Msa0013470:CDS 35.0%
GAACAACATCAACATCTACA+TGG + chr1_1:20832852-20832871 Msa0013470:CDS 35.0%
TTGATGAACTCTCTTGGTAA+TGG + chr1_1:20832876-20832895 Msa0013470:CDS 35.0%
! AGACTTTGTTGTGATGATGA+TGG - chr1_1:20832972-20832991 None:intergenic 35.0%
TCATCACAACAAAGTCTAGT+TGG + chr1_1:20832975-20832994 Msa0013470:CDS 35.0%
!! CTAGTTGGTAATTTGTGCTT+TGG + chr1_1:20832990-20833009 Msa0013470:CDS 35.0%
!! ACTTTGGATTTTCTTGGTGT+TGG + chr1_1:20833029-20833048 Msa0013470:CDS 35.0%
AGAAACATGAGTAGTCATAG+TGG + chr1_1:20833062-20833081 Msa0013470:CDS 35.0%
GAACAACATGGATCCTAAAT+TGG + chr1_1:20833133-20833152 Msa0013470:CDS 35.0%
!! CCTTGTGTTGATTCCAATTT+AGG - chr1_1:20833149-20833168 None:intergenic 35.0%
CCTAAATTGGAATCAACACA+AGG + chr1_1:20833146-20833165 Msa0013470:CDS 35.0%
ACTATCTCCAAAGACCCTAA+TGG + chr1_1:20828781-20828800 Msa0013470:CDS 40.0%
TTTGTTGCCATTAGGGTCTT+TGG - chr1_1:20828791-20828810 None:intergenic 40.0%
!! CTCTTTTGCTTTAGCTTCCA+AGG - chr1_1:20828893-20828912 None:intergenic 40.0%
AGTGCTTCTTAATTCCAGTG+AGG - chr1_1:20828997-20829016 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG + chr1_1:20829023-20829042 Msa0013470:CDS 40.0%
CTCAGTAGTGAATGACAATG+AGG - chr1_1:20829205-20829224 None:intergenic 40.0%
GGAGGATCCATAATTGAAAC+TGG + chr1_1:20829282-20829301 Msa0013470:intron 40.0%
TGCATAGAATATGCAAGGTC+CGG + chr1_1:20829545-20829564 Msa0013470:intron 40.0%
CGGCCAACACCAAAAAAATT+TGG + chr1_1:20829579-20829598 Msa0013470:intron 40.0%
TGTCCTCACCTAGTTTCTTA+TGG + chr1_1:20829769-20829788 Msa0013470:intron 40.0%
!! AGTTTATGCGTGGGTTTTAG+TGG + chr1_1:20829920-20829939 Msa0013470:intron 40.0%
! TCACATGAGTTGAACTTGCT+TGG + chr1_1:20830156-20830175 Msa0013470:intron 40.0%
CAGTTTGCATTAATTGAGGG+TGG + chr1_1:20830613-20830632 Msa0013470:intron 40.0%
TGCTTTCAGTGATCAAAGAG+AGG + chr1_1:20830690-20830709 Msa0013470:intron 40.0%
ATCAAAGAGAGGACTCAAAG+TGG + chr1_1:20830701-20830720 Msa0013470:intron 40.0%
CTCAAAGTGGTAGTTCGATA+AGG + chr1_1:20830714-20830733 Msa0013470:intron 40.0%
GTAGTTCGATAAGGAGTTGT+TGG + chr1_1:20830723-20830742 Msa0013470:intron 40.0%
AATGAAAAAAGAGGGCCCAT+GGG - chr1_1:20830772-20830791 None:intergenic 40.0%
!!! TACTTTTTTGGGTGGCACTT+TGG + chr1_1:20830905-20830924 Msa0013470:intron 40.0%
GTCACCGTGACATTAAATCT+AGG + chr1_1:20830938-20830957 Msa0013470:intron 40.0%
GTGGCCTAGATTTAATGTCA+CGG - chr1_1:20830945-20830964 None:intergenic 40.0%
GCAATGACAATGTGTTTGTG+TGG - chr1_1:20830964-20830983 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - chr1_1:20830938-20830957 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr1_1:20830937-20830956 None:intergenic 40.0%
GATTGATCCTCAAAAAAGGG+AGG - chr1_1:20831069-20831088 None:intergenic 40.0%
TTCATTTGTCCATCACACCT+AGG + chr1_1:20831533-20831552 Msa0013470:intron 40.0%
! AGAGTACTTAACCCACAACT+CGG + chr1_1:20831890-20831909 Msa0013470:intron 40.0%
TTGTACTTATCCCGAGTTGT+GGG - chr1_1:20831904-20831923 None:intergenic 40.0%
ACAACTCGGGATAAGTACAA+GGG + chr1_1:20831904-20831923 Msa0013470:intron 40.0%
TCCACAAACCACATGAGTTT+AGG + chr1_1:20832264-20832283 Msa0013470:CDS 40.0%
ACCTAAACTCATGTGGTTTG+TGG - chr1_1:20832268-20832287 None:intergenic 40.0%
TCCTTGTTGGGTGCTTATTT+GGG - chr1_1:20832295-20832314 None:intergenic 40.0%
ATCAGTGATGAAGAAAGGTG+AGG - chr1_1:20832448-20832467 None:intergenic 40.0%
TTCCAACAAGACCTTCATCA+AGG + chr1_1:20832480-20832499 Msa0013470:CDS 40.0%
ATGCAACTTCCTGATCTTCA+AGG + chr1_1:20832543-20832562 Msa0013470:CDS 40.0%
CATCATCCTCATCAACATGA+AGG + chr1_1:20832681-20832700 Msa0013470:CDS 40.0%
ACGACTATCAACAACAGCAA+TGG + chr1_1:20832816-20832835 Msa0013470:CDS 40.0%
CATGGTTTGATGAACTCTCT+TGG + chr1_1:20832870-20832889 Msa0013470:CDS 40.0%
TGGTCAGTTTCACAATGTTG+AGG + chr1_1:20832929-20832948 Msa0013470:CDS 40.0%
TCAGTTTCACAATGTTGAGG+AGG + chr1_1:20832932-20832951 Msa0013470:CDS 40.0%
!! GTTGGTAATTTGTGCTTTGG+AGG + chr1_1:20832993-20833012 Msa0013470:CDS 40.0%
!!! TTGGATTTTCTTGGTGTTGG+AGG + chr1_1:20833032-20833051 Msa0013470:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG + chr1_1:20833037-20833056 Msa0013470:CDS 40.0%
AACATGAGTAGTCATAGTGG+TGG + chr1_1:20833065-20833084 Msa0013470:CDS 40.0%
CATGTTGTTCATTGCACTCA+TGG - chr1_1:20833123-20833142 None:intergenic 40.0%
CATGAGTGCAATGAACAACA+TGG + chr1_1:20833121-20833140 Msa0013470:CDS 40.0%
!! AGCAGTTGATGAAGCATCTG+TGG - chr1_1:20828246-20828265 None:intergenic 45.0%
GAAAACAGATCCAGATGCAG+AGG + chr1_1:20828751-20828770 Msa0013470:intron 45.0%
GAAGAGGACACAATTTGCCT+TGG + chr1_1:20828873-20828892 Msa0013470:CDS 45.0%
!! TGGTGAACACATGTTGGTTC+TGG - chr1_1:20828950-20828969 None:intergenic 45.0%
TGTTCACCATGACCCTTCAA+GGG + chr1_1:20828961-20828980 Msa0013470:CDS 45.0%
! AGGGAGTATAGATGTGACTG+TGG + chr1_1:20829118-20829137 Msa0013470:CDS 45.0%
ACTGTGGTACTCTCTTCTCA+AGG + chr1_1:20829134-20829153 Msa0013470:CDS 45.0%
GCATAGAATATGCAAGGTCC+GGG + chr1_1:20829546-20829565 Msa0013470:intron 45.0%
CATAGAATATGCAAGGTCCG+GGG + chr1_1:20829547-20829566 Msa0013470:intron 45.0%
!! TTATGCGTGGGTTTTAGTGG+AGG + chr1_1:20829923-20829942 Msa0013470:intron 45.0%
!! GTGGGTTTTAGTGGAGGATA+TGG + chr1_1:20829929-20829948 Msa0013470:intron 45.0%
AGGATATGGCAGTGTGAATG+TGG + chr1_1:20829943-20829962 Msa0013470:intron 45.0%
CAATGAAAAAAGAGGGCCCA+TGG - chr1_1:20830773-20830792 None:intergenic 45.0%
!! CTCAAAAAAGGGAGGCACTT+TGG - chr1_1:20831061-20831080 None:intergenic 45.0%
!!! CAAAGTGCCTCCCTTTTTTG+AGG + chr1_1:20831059-20831078 Msa0013470:intron 45.0%
! TCTCACGCAGACAATGGTTT+TGG + chr1_1:20831652-20831671 Msa0013470:intron 45.0%
GAGTACTTAACCCACAACTC+GGG + chr1_1:20831891-20831910 Msa0013470:intron 45.0%
CTTGTACTTATCCCGAGTTG+TGG - chr1_1:20831905-20831924 None:intergenic 45.0%
CACAACTCGGGATAAGTACA+AGG + chr1_1:20831903-20831922 Msa0013470:intron 45.0%
CAACTCGGGATAAGTACAAG+GGG + chr1_1:20831905-20831924 Msa0013470:intron 45.0%
CCAAAGGGTTCATGTTGGAA+GGG - chr1_1:20832230-20832249 None:intergenic 45.0%
AGTTGCCAAAGGGTTCATGT+TGG - chr1_1:20832235-20832254 None:intergenic 45.0%
GGGATAGACCTAAACTCATG+TGG - chr1_1:20832275-20832294 None:intergenic 45.0%
TCCCAAATAAGCACCCAACA+AGG + chr1_1:20832291-20832310 Msa0013470:CDS 45.0%
CTCCTTGTTGGGTGCTTATT+TGG - chr1_1:20832296-20832315 None:intergenic 45.0%
GTTGTTTGTGGCTCCTTGTT+GGG - chr1_1:20832307-20832326 None:intergenic 45.0%
! TGTTGTTTGTGGCTCCTTGT+TGG - chr1_1:20832308-20832327 None:intergenic 45.0%
! GTCCTTGATGAAGGTCTTGT+TGG - chr1_1:20832485-20832504 None:intergenic 45.0%
ATGAGTAGTCATAGTGGTGG+AGG + chr1_1:20833068-20833087 Msa0013470:CDS 45.0%
!!! TAATTTATGTTTTAATTTTT+AGG - chr1_1:20831727-20831746 None:intergenic 5.0%
AGGTACTTGCATGGTGTTCC+AGG - chr1_1:20828308-20828327 None:intergenic 50.0%
AGTGCTATCACCTCTGCATC+TGG - chr1_1:20828764-20828783 None:intergenic 50.0%
GGGTCATGGTGAACACATGT+TGG - chr1_1:20828956-20828975 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG + chr1_1:20828960-20828979 Msa0013470:CDS 50.0%
CCCTTCCAACATGAACCCTT+TGG + chr1_1:20832227-20832246 Msa0013470:CDS 50.0%
GCCAAAGGGTTCATGTTGGA+AGG - chr1_1:20832231-20832250 None:intergenic 50.0%
GTTGTCTTCGCCACACATGT+CGG + chr1_1:20832749-20832768 Msa0013470:CDS 50.0%
AATGCAGTTGCCGACATGTG+TGG - chr1_1:20832762-20832781 None:intergenic 50.0%
CAAGAGCCCTTGAAGGGTCA+TGG - chr1_1:20828970-20828989 None:intergenic 55.0%
CATGACCCTTCAAGGGCTCT+TGG + chr1_1:20828968-20828987 Msa0013470:CDS 55.0%
GGTCACCAAGAGCCCTTGAA+GGG - chr1_1:20828976-20828995 None:intergenic 55.0%
AGGTCACCAAGAGCCCTTGA+AGG - chr1_1:20828977-20828996 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_1:20829516-20829535 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_1:20829513-20829532 Msa0013470:intron 55.0%
! TTGAGGGTGGCCCCATTTTG+TGG + chr1_1:20830626-20830645 Msa0013470:intron 55.0%
! AGGGCTCTTGGTGACCTCAC+TGG + chr1_1:20828980-20828999 Msa0013470:CDS 60.0%
AAGGTCCGGGGTTCGAATCC+CGG + chr1_1:20829559-20829578 Msa0013470:intron 60.0%
GTTGGCCGGGATTCGAACCC+CGG - chr1_1:20829567-20829586 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20828161 20833184 20828161 ID=Msa0013470;Name=Msa0013470
chr1_1 mRNA 20828161 20833184 20828161 ID=Msa0013470-mRNA-1;Parent=Msa0013470;Name=Msa0013470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.75|1|1|4|0|548
chr1_1 exon 20828161 20828321 20828161 ID=Msa0013470-mRNA-1:exon:7431;Parent=Msa0013470-mRNA-1
chr1_1 exon 20828463 20828530 20828463 ID=Msa0013470-mRNA-1:exon:7432;Parent=Msa0013470-mRNA-1
chr1_1 exon 20828759 20829155 20828759 ID=Msa0013470-mRNA-1:exon:7433;Parent=Msa0013470-mRNA-1
chr1_1 exon 20832164 20833184 20832164 ID=Msa0013470-mRNA-1:exon:7434;Parent=Msa0013470-mRNA-1
chr1_1 CDS 20828161 20828321 20828161 ID=Msa0013470-mRNA-1:cds;Parent=Msa0013470-mRNA-1
chr1_1 CDS 20828463 20828530 20828463 ID=Msa0013470-mRNA-1:cds;Parent=Msa0013470-mRNA-1
chr1_1 CDS 20828759 20829155 20828759 ID=Msa0013470-mRNA-1:cds;Parent=Msa0013470-mRNA-1
chr1_1 CDS 20832164 20833184 20832164 ID=Msa0013470-mRNA-1:cds;Parent=Msa0013470-mRNA-1
Gene Sequence

>Msa0013470

ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATGCAATATAGGGTTATCAAGTTTTTCTAATGAAAAGTGGTTTGAAATTGAATGGGAAATCTTCTTCCCTCTATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGATAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAAATAAGCACCCAACAAGGAGCCACAAACAACAACATATTAAGCCTAGGTAATATTCCTTGTACACCAAAATATGAACATCATTTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCAAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCCTCATCAACATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCAACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACGACTATCAACAACAGCAATGGTGTAGAATCTGATGAACAACATCAACATCTACATGGTTTGATGAACTCTCTTGGTAATGGAAATACTTCAATATATGATAACAATAATCTTGGTCAGTTTCACAATGTTGAGGAGGAGAATAAAAAGATGCCATCATCATCACAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAGTCATAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA
Protein sequence

>Msa0013470

MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPCNIGLSSFSNEKWFEIEWEIFFPLYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHPHQHEGFSSLFGNSSMQQENMLSSPHMSATALLQKAAQIGSTTTTINNSNGVESDEQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMPSSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMSSHSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF*