AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153330 MtrunA17_Chr1g0163001 93.636 550 8 4 1 548 1 525 0.0 1036
Msa0153330 MtrunA17_Chr1g0199101 55.207 605 141 22 1 548 1 532 3.61e-179 515
Msa0153330 MtrunA17_Chr1g0162971 48.094 551 135 19 1 525 1 426 1.06e-132 393
Msa0153330 MtrunA17_Chr1g0210821 41.290 620 214 18 1 545 1 545 7.76e-121 367
Msa0153330 MtrunA17_Chr7g0263941 73.301 206 27 3 34 235 23 204 3.90e-105 321
Msa0153330 MtrunA17_Chr8g0342421 74.611 193 25 1 41 233 60 228 4.00e-103 320
Msa0153330 MtrunA17_Chr2g0330171 69.159 214 39 2 16 229 22 208 1.50e-102 317
Msa0153330 MtrunA17_Chr1g0181381 76.166 193 20 3 38 229 34 201 1.81e-102 318
Msa0153330 MtrunA17_Chr8g0373541 73.545 189 26 1 41 229 31 195 7.17e-101 314
Msa0153330 MtrunA17_Chr4g0040571 74.866 187 23 1 43 229 39 201 3.90e-100 311
Msa0153330 MtrunA17_Chr4g0029521 46.402 403 123 13 40 433 35 353 3.23e-99 309
Msa0153330 MtrunA17_Chr1g0185121 62.000 250 57 5 2 242 4 224 5.30e-97 301
Msa0153330 MtrunA17_Chr1g0191991 71.429 189 30 1 41 229 61 225 1.39e-96 303
Msa0153330 MtrunA17_Chr1g0151351 62.882 229 54 5 15 237 8 211 6.21e-93 291
Msa0153330 MtrunA17_Chr2g0326381 68.617 188 34 2 43 229 32 195 4.31e-91 285
Msa0153330 MtrunA17_Chr3g0141431 64.674 184 40 2 41 223 20 179 2.40e-85 270
Msa0153330 MtrunA17_Chr2g0324991 84.211 133 21 0 76 208 1 133 7.79e-84 257
Msa0153330 MtrunA17_Chr6g0479921 62.759 145 53 1 78 221 40 184 1.79e-65 220
Msa0153330 MtrunA17_Chr8g0375521 62.759 145 52 2 78 220 38 182 3.36e-64 215
Msa0153330 MtrunA17_Chr1g0200421 34.437 151 87 4 81 219 236 386 4.02e-23 102
Msa0153330 MtrunA17_Chr2g0320341 34.868 152 85 4 79 216 227 378 5.95e-22 98.2
Msa0153330 MtrunA17_Chr3g0123941 34.899 149 89 3 79 219 120 268 1.27e-21 96.3
Msa0153330 MtrunA17_Chr8g0352011 36.301 146 83 5 83 219 166 310 1.03e-19 90.5
Msa0153330 MtrunA17_Chr5g0422571 35.811 148 82 5 88 224 106 251 2.08e-19 89.0
Msa0153330 MtrunA17_Chr1g0198651 33.544 158 89 6 75 219 95 249 3.08e-19 88.6
Msa0153330 MtrunA17_Chr7g0258011 33.333 162 90 6 83 227 176 336 3.11e-19 89.4
Msa0153330 MtrunA17_Chr4g0053341 33.775 151 90 4 78 219 69 218 6.08e-19 86.3
Msa0153330 MtrunA17_Chr1g0173841 34.932 146 85 5 83 219 215 359 1.12e-18 88.2
Msa0153330 MtrunA17_Chr8g0382121 32.432 148 89 5 80 216 109 256 3.26e-18 85.9
Msa0153330 MtrunA17_Chr2g0328921 33.562 146 87 5 83 219 138 282 5.24e-18 85.1
Msa0153330 MtrunA17_Chr2g0321291 34.694 147 84 5 83 219 133 277 1.66e-17 83.6
Msa0153330 MtrunA17_Chr4g0026521 33.333 147 86 5 83 219 118 262 9.99e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153330 AT2G02080.1 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0153330 AT2G02080.4 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0153330 AT2G02080.5 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0153330 AT2G02080.3 45.908 501 171 12 41 511 52 482 2.81e-124 375
Msa0153330 AT2G02070.2 45.269 539 190 14 42 519 51 545 4.06e-115 354
Msa0153330 AT2G02070.1 45.269 539 190 14 42 519 51 545 4.06e-115 354
Msa0153330 AT1G14580.1 44.141 512 186 12 2 508 20 436 1.78e-112 343
Msa0153330 AT1G14580.2 44.141 512 186 12 2 508 20 436 1.78e-112 343
Msa0153330 AT1G14580.3 44.336 512 185 13 2 508 34 450 2.77e-112 343
Msa0153330 AT2G02080.6 46.120 451 167 11 91 511 1 405 6.31e-112 340
Msa0153330 AT2G02080.2 46.120 451 167 11 91 511 1 405 6.31e-112 340
Msa0153330 AT3G50700.1 70.142 211 36 2 22 229 10 196 8.30e-103 317
Msa0153330 AT5G66730.1 71.429 203 31 2 31 230 17 195 1.62e-100 313
Msa0153330 AT1G55110.3 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0153330 AT1G55110.1 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0153330 AT1G55110.2 68.837 215 30 4 19 229 45 226 2.69e-98 306
Msa0153330 AT1G03840.1 72.396 192 27 2 38 229 38 203 3.05e-98 307
Msa0153330 AT3G13810.4 75.661 189 21 2 42 229 69 233 5.65e-98 307
Msa0153330 AT3G13810.1 75.661 189 21 2 42 229 69 233 5.65e-98 307
Msa0153330 AT3G13810.6 75.661 189 21 2 42 229 50 214 7.18e-98 306
Msa0153330 AT3G13810.5 75.661 189 21 2 42 229 64 228 8.37e-98 306
Msa0153330 AT1G03840.2 83.333 156 26 0 74 229 46 201 1.17e-97 306
Msa0153330 AT5G03150.1 69.668 211 33 4 43 250 53 235 1.78e-97 305
Msa0153330 AT3G13810.3 87.097 155 19 1 76 229 66 220 3.85e-97 304
Msa0153330 AT3G13810.2 87.097 155 19 1 76 229 80 234 4.78e-97 304
Msa0153330 AT3G45260.2 72.251 191 28 2 43 232 39 205 7.50e-96 299
Msa0153330 AT3G45260.1 72.251 191 28 2 43 232 39 205 7.50e-96 299
Msa0153330 AT5G44160.1 71.875 192 28 2 38 229 34 199 5.21e-95 298
Msa0153330 AT5G44160.2 80.120 166 31 1 76 239 7 172 1.54e-94 295
Msa0153330 AT4G02670.1 84.967 153 22 1 78 229 64 216 2.43e-94 294
Msa0153330 AT4G02670.2 84.967 153 22 1 78 229 66 218 2.67e-94 294
Msa0153330 AT1G25250.1 63.014 146 51 2 78 220 21 166 9.51e-66 218
Msa0153330 AT2G01940.1 63.946 147 51 2 78 222 55 201 1.21e-65 220
Msa0153330 AT1G25250.3 63.014 146 51 2 78 220 44 189 1.23e-65 218
Msa0153330 AT1G68130.1 56.395 172 65 3 78 239 52 223 2.79e-65 218
Msa0153330 AT2G01940.3 62.838 148 52 3 78 222 55 202 4.49e-62 211
Msa0153330 AT1G68130.2 54.745 137 52 3 113 239 1 137 4.47e-45 162
Msa0153330 AT2G01940.2 64.286 112 38 2 113 222 1 112 7.30e-45 162
Msa0153330 AT1G25250.2 62.162 111 39 2 113 220 1 111 1.97e-44 159
Msa0153330 AT1G34370.3 33.333 153 88 3 81 219 19 171 6.36e-22 96.7
Msa0153330 AT1G34370.2 33.333 153 88 3 81 219 229 381 1.43e-21 98.6
Msa0153330 AT1G34370.1 33.333 153 88 3 81 219 229 381 1.43e-21 98.6
Msa0153330 AT5G22890.1 31.373 153 91 3 81 219 202 354 6.57e-21 95.1
Msa0153330 AT3G20880.1 31.737 167 98 6 83 234 243 408 5.41e-19 89.7
Msa0153330 AT1G51220.1 32.192 146 89 4 83 219 165 309 2.02e-18 87.0
Msa0153330 AT3G57670.1 34.247 146 86 5 83 219 204 348 4.08e-18 87.0
Msa0153330 AT1G13290.1 34.899 149 83 6 88 224 93 239 7.24e-18 85.1
Msa0153330 AT1G34790.1 35.333 150 85 6 80 219 129 276 1.70e-17 84.0
Msa0153330 AT1G08290.1 31.163 215 120 8 16 219 115 312 5.54e-17 82.8

Find 96 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTGTTGATTCCAATTT+AGG 0.091214 1_4:+16580465 None:intergenic
CTCCTTGTTGGGTGCTTATC+TGG 0.106073 1_4:+16581318 None:intergenic
CGAAGAAGTTGTGTTGTTAT+TGG 0.199081 1_4:+16581040 None:intergenic
TTTGTTGCCATTAGGGTCTT+TGG 0.213274 1_4:+16584637 None:intergenic
GGAAAGAAGCTTAGGTTAAA+AGG 0.236965 1_4:+16581008 None:intergenic
TCCATTGTTGATCTTCAAAA+AGG 0.237827 1_4:+16580435 None:intergenic
TTCATCATCTACACCTTTCT+TGG 0.248087 1_4:-16585256 Msa0153330:CDS
ATTAGATGATGTTCATATTT+TGG 0.253906 1_4:+16581251 None:intergenic
CACAAATAAACCTTTCTCTT+TGG 0.255380 1_4:+16584502 None:intergenic
GAACAACATGGATCCTAAAT+TGG 0.267054 1_4:-16580478 Msa0153330:CDS
AAATCTGTTTGTTGCCATTA+GGG 0.267384 1_4:+16584630 None:intergenic
CAAATCTGTTTGTTGCCATT+AGG 0.293552 1_4:+16584629 None:intergenic
AGGTACTTGCATGGTGTTCC+AGG 0.328858 1_4:+16585123 None:intergenic
GTGTTGTTACCATTGGTATT+TGG 0.331507 1_4:+16580987 None:intergenic
GCTTAATATGTTGTTGTTTG+TGG 0.341536 1_4:+16581295 None:intergenic
CTAGTTGGTAATTTGTGCTT+TGG 0.354162 1_4:-16580621 Msa0153330:CDS
GTATGTGAAGTGTGTCAAAA+AGG 0.363879 1_4:-16584607 Msa0153330:CDS
TCTTGTTGGAAAGTTTGATT+TGG 0.366501 1_4:+16581143 None:intergenic
TCCACAAACCACATGAGTTT+AGG 0.377863 1_4:-16581347 Msa0153330:CDS
TCCTTGTTGGGTGCTTATCT+GGG 0.390257 1_4:+16581319 None:intergenic
GTTGGTAATTTGTGCTTTGG+AGG 0.397322 1_4:-16580618 Msa0153330:CDS
TGTTGTTTGTGGCTCCTTGT+TGG 0.400951 1_4:+16581306 None:intergenic
AGTGCTATCACCTCTGCATC+TGG 0.401274 1_4:+16584664 None:intergenic
TGGTGAACACATGTTGGTTC+TGG 0.406411 1_4:+16584478 None:intergenic
ATGCAACTTCCTGATCTTCA+AGG 0.407756 1_4:-16581068 Msa0153330:CDS
ATTCTAAGACTTGTGGTACT+AGG 0.408246 1_4:-16584327 Msa0153330:CDS
GTTGTTTGTGGCTCCTTGTT+GGG 0.418545 1_4:+16581307 None:intergenic
TTGGTATTTCCTTGAAGATC+AGG 0.421140 1_4:+16581059 None:intergenic
AAAAGTGGTTTGAAATTGAA+TGG 0.422881 1_4:-16584939 Msa0153330:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1_4:-16581445 Msa0153330:CDS
AGGATCAGATAAATTGACTT+TGG 0.426316 1_4:-16580598 Msa0153330:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_4:-16584357 Msa0153330:CDS
GTCCTTGATGAAGGTCTTGT+TGG 0.436312 1_4:+16581129 None:intergenic
ACCTAAACTCATGTGGTTTG+TGG 0.441992 1_4:+16581346 None:intergenic
TGGTATTTGGAAAGAAGCTT+AGG 0.442631 1_4:+16581000 None:intergenic
GTGTTCACCATGACCCTTCA+AGG 0.444680 1_4:-16584465 Msa0153330:CDS
CATGTTGTTCATTGCACTCA+TGG 0.444733 1_4:+16580491 None:intergenic
ATATATGATAACAATAATCT+TGG 0.452803 1_4:-16580702 Msa0153330:CDS
TTGATGAACTCTCTTGGTAA+TGG 0.453657 1_4:-16580735 Msa0153330:CDS
CATGACCCTTCAAGGGCTCT+TGG 0.457066 1_4:-16584457 Msa0153330:CDS
CCCTTCCAACATGAACCCTT+TGG 0.462526 1_4:-16581384 Msa0153330:CDS
TCTTGTCTGATTTCCAAGAA+AGG 0.471370 1_4:+16585243 None:intergenic
AGGGCTCTTGGTGACCTCAC+TGG 0.481216 1_4:-16584445 Msa0153330:CDS
CATGGTTTGATGAACTCTCT+TGG 0.494225 1_4:-16580741 Msa0153330:CDS
GCCAAAGGGTTCATGTTGGA+AGG 0.499818 1_4:+16581383 None:intergenic
ACTATCTCCAAAGACCCTAA+TGG 0.500143 1_4:-16584644 Msa0153330:CDS
GAAGAGGACACAATTTGCCT+TGG 0.500777 1_4:-16584552 Msa0153330:CDS
ATGCATTGTGTTGTTACCAT+TGG 0.504019 1_4:+16580980 None:intergenic
TTGAGAATTGTCCTTGATGA+AGG 0.510385 1_4:+16581120 None:intergenic
TAACAAAGAGCCAAAGAGAA+AGG 0.517289 1_4:-16584512 Msa0153330:CDS
TCATCACAACAAAGTCTAGT+TGG 0.517423 1_4:-16580636 Msa0153330:CDS
GATGATGATGATTGATGTAA+AGG 0.518086 1_4:+16581224 None:intergenic
TTCTAAGACTTGTGGTACTA+GGG 0.522062 1_4:-16584326 Msa0153330:CDS
AAAGTGGTTTGAAATTGAAT+GGG 0.536574 1_4:-16584938 Msa0153330:CDS
AAACAACTTCATCTTCATCA+TGG 0.542991 1_4:-16581095 Msa0153330:CDS
ATGAGTAGTCATAGTGGTGG+AGG 0.544180 1_4:-16580543 Msa0153330:CDS
TGGTCAGTTTCACAATGTTG+AGG 0.562544 1_4:-16580682 Msa0153330:CDS
TAACAACACAACTTCTTCGT+CGG 0.566297 1_4:-16581036 Msa0153330:CDS
AGCTTCTTTCCAAATACCAA+TGG 0.568397 1_4:-16580996 Msa0153330:CDS
TTCCAACAAGACCTTCATCA+AGG 0.568775 1_4:-16581131 Msa0153330:CDS
GTGTACAAGGAATGTTACCT+AGG 0.570781 1_4:+16581273 None:intergenic
CATCATCCTCATCAACATGA+AGG 0.570900 1_4:-16580930 Msa0153330:CDS
TATATATAGATATACATAGA+GGG 0.571167 1_4:+16584905 None:intergenic
CAAGAGCCCTTGAAGGGTCA+TGG 0.571189 1_4:+16584458 None:intergenic
TTTGGATCAGTGATGAAGAA+AGG 0.573682 1_4:+16581161 None:intergenic
CCAAAGGGTTCATGTTGGAA+GGG 0.582486 1_4:+16581384 None:intergenic
TGACAGTTTCATCACTCATA+GGG 0.582640 1_4:-16581444 Msa0153330:CDS
AAAATAGATGAGTTGCCAAA+GGG 0.582651 1_4:+16581369 None:intergenic
AGGTCACCAAGAGCCCTTGA+AGG 0.583044 1_4:+16584451 None:intergenic
GAAAATAGATGAGTTGCCAA+AGG 0.595195 1_4:+16581368 None:intergenic
TCAGTTTCACAATGTTGAGG+AGG 0.598972 1_4:-16580679 Msa0153330:CDS
AACATGAGTAGTCATAGTGG+TGG 0.599920 1_4:-16580546 Msa0153330:CDS
AGACTTTGTTGTGATGATGA+TGG 0.601984 1_4:+16580642 None:intergenic
AACAACAACATATTAAGCCT+AGG 0.605686 1_4:-16581290 Msa0153330:CDS
AATGCATAAAGGTACTTGCA+TGG 0.607082 1_4:+16585114 None:intergenic
AAAGCTCATTCTAAGACTTG+TGG 0.613886 1_4:-16584334 Msa0153330:CDS
AGTTGCCAAAGGGTTCATGT+TGG 0.620508 1_4:+16581379 None:intergenic
TGTTCACCATGACCCTTCAA+GGG 0.621698 1_4:-16584464 Msa0153330:CDS
CCTAAATTGGAATCAACACA+AGG 0.622024 1_4:-16580465 Msa0153330:CDS
GAAAACAGATCCAGATGCAG+AGG 0.622348 1_4:-16584674 Msa0153330:intron
ATCAGTGATGAAGAAAGGTG+AGG 0.628094 1_4:+16581166 None:intergenic
TCCCAGATAAGCACCCAACA+AGG 0.630821 1_4:-16581320 Msa0153330:CDS
AATTTGCAACTACATAGAAG+AGG 0.631288 1_4:-16584568 Msa0153330:CDS
CATGAGTGCAATGAACAACA+TGG 0.631457 1_4:-16580490 Msa0153330:CDS
AGCAGTTGATGAAGCATCTG+TGG 0.636040 1_4:+16585185 None:intergenic
ACTGTGGTACTCTCTTCTCA+AGG 0.636169 1_4:-16584291 Msa0153330:intron
ACGACTATCAACAACAGCAA+TGG 0.638790 1_4:-16580795 Msa0153330:CDS
GGTCACCAAGAGCCCTTGAA+GGG 0.641915 1_4:+16584452 None:intergenic
GAACAACATCAACATCTACA+TGG 0.645232 1_4:-16580759 Msa0153330:CDS
GGGATAGACCTAAACTCATG+TGG 0.647071 1_4:+16581339 None:intergenic
AGAAACATGAGTAGTCATAG+TGG 0.649943 1_4:-16580549 Msa0153330:CDS
AATGCAGTTGCCGACATGTG+TGG 0.670626 1_4:+16580852 None:intergenic
GTTGTCTTCGCCACACATGT+CGG 0.684664 1_4:-16580862 Msa0153330:CDS
GGGTCATGGTGAACACATGT+TGG 0.698022 1_4:+16584472 None:intergenic
AGTGCTTCTTAATTCCAGTG+AGG 0.713073 1_4:+16584431 None:intergenic
AGGGAGTATAGATGTGACTG+TGG 0.716730 1_4:-16584307 Msa0153330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTCAAGATTAATTTA+GGG + chr1_4:16580727-16580746 None:intergenic 10.0%
!! AAAAAATTCAAGATTAATTT+AGG + chr1_4:16580728-16580747 None:intergenic 10.0%
!! TTATTTGCATATAAAAAAAT+TGG + chr1_4:16581466-16581485 None:intergenic 10.0%
!! TCATCAATATTATTAAAATT+TGG - chr1_4:16581771-16581790 Msa0153330:intron 10.0%
!! TATTTCATAAAAACAATTAT+GGG + chr1_4:16583158-16583177 None:intergenic 10.0%
!! ATATTTCATAAAAACAATTA+TGG + chr1_4:16583159-16583178 None:intergenic 10.0%
!!! TATACATTAAAATATTCTTT+TGG - chr1_4:16583319-16583338 Msa0153330:intron 10.0%
!! ATTTATCCAAAATATAATTT+GGG + chr1_4:16583539-16583558 None:intergenic 10.0%
!! AATTTATCCAAAATATAATT+TGG + chr1_4:16583540-16583559 None:intergenic 10.0%
!! TTAATTAAATACTAATCAAA+AGG - chr1_4:16583784-16583803 Msa0153330:intron 10.0%
!! TTAAAATGTATATATTGAAA+TGG - chr1_4:16583887-16583906 Msa0153330:intron 10.0%
!! AAAAAAAAAAATATTGCATT+AGG + chr1_4:16584157-16584176 None:intergenic 10.0%
!!! ATCTTGAATTTTTTTAGTAT+AGG - chr1_4:16580734-16580753 Msa0153330:CDS 15.0%
!!! TCTTGAATTTTTTTAGTATA+GGG - chr1_4:16580735-16580754 Msa0153330:CDS 15.0%
!! TATATATAGATATACATAGA+GGG + chr1_4:16580814-16580833 None:intergenic 15.0%
!!! TTTTTTTTGTTTGTTTTGAA+TGG + chr1_4:16580957-16580976 None:intergenic 15.0%
!!! GTGTAACTTTTTTATTTTTT+TGG - chr1_4:16580989-16581008 Msa0153330:CDS 15.0%
!!! GATTAAAATTTGCTTAAAAT+AGG - chr1_4:16581552-16581571 Msa0153330:intron 15.0%
!!! CAATTTTAATATTAACGAAA+TGG + chr1_4:16581736-16581755 None:intergenic 15.0%
!! TTTAATATAATAACCATACA+CGG - chr1_4:16583233-16583252 Msa0153330:intron 15.0%
!!! TAATTCTAAGGTAATTAAAT+TGG + chr1_4:16583727-16583746 None:intergenic 15.0%
!! TTTCTCATTTCTAATAAATT+TGG + chr1_4:16583960-16583979 None:intergenic 15.0%
!! ATATATGATAACAATAATCT+TGG - chr1_4:16585014-16585033 Msa0153330:intron 15.0%
!! AAATAATGAAGAATGCATAA+AGG + chr1_4:16580616-16580635 None:intergenic 20.0%
!! GTATATATAGATATACATAG+AGG + chr1_4:16580815-16580834 None:intergenic 20.0%
!!! TAAAATTTGCTTAAAATAGG+AGG - chr1_4:16581555-16581574 Msa0153330:intron 20.0%
!! TAAAAAAATAGATCAACCAT+AGG + chr1_4:16581692-16581711 None:intergenic 20.0%
!!! GATTGAACCAAAATTTTTTT+TGG + chr1_4:16581882-16581901 None:intergenic 20.0%
!!! TCTATTGATGCATTTTAATT+TGG - chr1_4:16581900-16581919 Msa0153330:intron 20.0%
!!! ACGAATGTAATTTAAAACTT+TGG + chr1_4:16581928-16581947 None:intergenic 20.0%
!! TTACTCATATTTACTATTCT+TGG + chr1_4:16582091-16582110 None:intergenic 20.0%
!! AAAATGAAAAATAGCTAACA+AGG - chr1_4:16582122-16582141 Msa0153330:intron 20.0%
!! TCGTAAACAAAAGTTAAAAT+AGG - chr1_4:16582161-16582180 Msa0153330:intron 20.0%
!! CGTAAACAAAAGTTAAAATA+GGG - chr1_4:16582162-16582181 Msa0153330:intron 20.0%
!!! AAAATAAGTTGAGATTGTTT+TGG + chr1_4:16582341-16582360 None:intergenic 20.0%
!!! TTATTTTTTTTGTTGTGCTT+TGG - chr1_4:16582354-16582373 Msa0153330:intron 20.0%
!!! TATTTTTTTTGTTGTGCTTT+GGG - chr1_4:16582355-16582374 Msa0153330:intron 20.0%
!! GAAAAAATTCATCATAATGA+AGG + chr1_4:16582537-16582556 None:intergenic 20.0%
!!! TTTTTCTCTCTCAAATTTTA+CGG - chr1_4:16582662-16582681 Msa0153330:intron 20.0%
!!! TATTTTTCCATCTCTTATAA+TGG - chr1_4:16582700-16582719 Msa0153330:intron 20.0%
!! TTCACAAGAATTATATATGA+TGG - chr1_4:16582860-16582879 Msa0153330:intron 20.0%
!! AATAATCAAAACCACAAAAT+GGG + chr1_4:16582934-16582953 None:intergenic 20.0%
!! CATTAAACAATGAAAAAAGA+GGG + chr1_4:16583074-16583093 None:intergenic 20.0%
!!! AAAAAGTATGTAGAATTGTA+GGG + chr1_4:16583186-16583205 None:intergenic 20.0%
!!! AAAAAAGTATGTAGAATTGT+AGG + chr1_4:16583187-16583206 None:intergenic 20.0%
!!! AATTCTACATACTTTTTTTG+AGG - chr1_4:16583189-16583208 Msa0153330:intron 20.0%
!! ATATTAAATGTCAAGTATGT+AGG + chr1_4:16583221-16583240 None:intergenic 20.0%
!! TTAATATAATAACCATACAC+GGG - chr1_4:16583234-16583253 Msa0153330:intron 20.0%
!! AAAAGTGAGATAAACAATTA+AGG + chr1_4:16583299-16583318 None:intergenic 20.0%
!! AAGGTAATTAAATTGGATAA+TGG + chr1_4:16583720-16583739 None:intergenic 20.0%
!!! TTAGAGTTTGATTTTTTTAC+GGG + chr1_4:16584035-16584054 None:intergenic 20.0%
!!! GTTAGAGTTTGATTTTTTTA+CGG + chr1_4:16584036-16584055 None:intergenic 20.0%
!!! ATTAGATGATGTTCATATTT+TGG + chr1_4:16584468-16584487 None:intergenic 20.0%
!!! TGATTTCTTCTTTTTTTCTG+AGG + chr1_4:16580572-16580591 None:intergenic 25.0%
! AAAAAAAGAAGAAATCAACC+TGG - chr1_4:16580575-16580594 Msa0153330:CDS 25.0%
! TCCAGAAATATTTCACAAAA+GGG + chr1_4:16580672-16580691 None:intergenic 25.0%
! ATCCAGAAATATTTCACAAA+AGG + chr1_4:16580673-16580692 None:intergenic 25.0%
!! CAAGTTTTTCTAATGAAAAG+TGG - chr1_4:16580762-16580781 Msa0153330:CDS 25.0%
!! AAAAGTGGTTTGAAATTGAA+TGG - chr1_4:16580777-16580796 Msa0153330:CDS 25.0%
!! AAAGTGGTTTGAAATTGAAT+GGG - chr1_4:16580778-16580797 Msa0153330:CDS 25.0%
! ATGTTAATACACATTACCTA+TGG - chr1_4:16581673-16581692 Msa0153330:intron 25.0%
!!! ACCAAAATTTTTTTTGGTGT+TGG + chr1_4:16581876-16581895 None:intergenic 25.0%
! AACAAAACAAAAAGCTTCAA+TGG + chr1_4:16582193-16582212 None:intergenic 25.0%
! GGATGCAATTATATGTATTA+TGG + chr1_4:16582585-16582604 None:intergenic 25.0%
! CATCATACAATAGATTATAG+AGG + chr1_4:16582606-16582625 None:intergenic 25.0%
! AATTATCTCGCATAACTTAA+TGG + chr1_4:16582643-16582662 None:intergenic 25.0%
!! ATGTTTTCTCAAAGATTTTC+CGG - chr1_4:16582805-16582824 Msa0153330:intron 25.0%
! ATACGATCGTACTATTAAAA+AGG + chr1_4:16582841-16582860 None:intergenic 25.0%
! TTATATATGATGGTAAGAAG+TGG - chr1_4:16582870-16582889 Msa0153330:intron 25.0%
! ATAATCAAAACCACAAAATG+GGG + chr1_4:16582933-16582952 None:intergenic 25.0%
! CAATAATCAAAACCACAAAA+TGG + chr1_4:16582935-16582954 None:intergenic 25.0%
!!! CATTTTGTGGTTTTGATTAT+TGG - chr1_4:16582933-16582952 Msa0153330:intron 25.0%
! GCATTAAACAATGAAAAAAG+AGG + chr1_4:16583075-16583094 None:intergenic 25.0%
!!! GAAAGATAGACTTTTAAGTA+AGG + chr1_4:16583608-16583627 None:intergenic 25.0%
! AAAGAGATAAAATATGTCCT+AGG + chr1_4:16583650-16583669 None:intergenic 25.0%
! AATACTAATCAAAAGGTTCA+AGG - chr1_4:16583791-16583810 Msa0153330:intron 25.0%
!!! TAGAGTTTGATTTTTTTACG+GGG + chr1_4:16584034-16584053 None:intergenic 25.0%
!! AATTCGAATGTATTTGTTAG+AGG + chr1_4:16584129-16584148 None:intergenic 25.0%
!!! TGGAAATAACAAGTTTGTTA+TGG + chr1_4:16584231-16584250 None:intergenic 25.0%
!!! AAATTGACTTTGGATTTTCT+TGG - chr1_4:16585128-16585147 Msa0153330:intron 25.0%
!!! CTTTTTTTCTGAGGAACTAA+AGG + chr1_4:16580563-16580582 None:intergenic 30.0%
! ACCCTTTTGTGAAATATTTC+TGG - chr1_4:16580668-16580687 Msa0153330:CDS 30.0%
!!! TTTGTTTGTTTTGAATGGCA+TGG + chr1_4:16580952-16580971 None:intergenic 30.0%
! AAATCTGTTTGTTGCCATTA+GGG + chr1_4:16581089-16581108 None:intergenic 30.0%
TATGTGAAGTGTGTCAAAAA+GGG - chr1_4:16581110-16581129 Msa0153330:CDS 30.0%
AATTTGCAACTACATAGAAG+AGG - chr1_4:16581148-16581167 Msa0153330:CDS 30.0%
CACAAATAAACCTTTCTCTT+TGG + chr1_4:16581217-16581236 None:intergenic 30.0%
AATATGCTGTTCAATCTGAT+TGG - chr1_4:16581359-16581378 Msa0153330:CDS 30.0%
TGCAAAACCAGTTTCAATTA+TGG + chr1_4:16581583-16581602 None:intergenic 30.0%
!! ACAAAAGAGTATCAACTAGA+GGG + chr1_4:16581614-16581633 None:intergenic 30.0%
!! TACAAAAGAGTATCAACTAG+AGG + chr1_4:16581615-16581634 None:intergenic 30.0%
!!! AAATTTTTTTTGGTGTTGGC+CGG + chr1_4:16581872-16581891 None:intergenic 30.0%
! GCCAACACCAAAAAAAATTT+TGG - chr1_4:16581872-16581891 Msa0153330:intron 30.0%
AACAAGGTTGTTGAAGAAAA+TGG - chr1_4:16582138-16582157 Msa0153330:intron 30.0%
!! TTGTTTTGTTAGTTTATGCG+TGG - chr1_4:16582203-16582222 Msa0153330:intron 30.0%
!! TGTTTTGTTAGTTTATGCGT+GGG - chr1_4:16582204-16582223 Msa0153330:intron 30.0%
AATGGGAATAAGCATAAAAG+TGG + chr1_4:16582388-16582407 None:intergenic 30.0%
TCGTTTAACAACATGTGAAT+GGG + chr1_4:16582405-16582424 None:intergenic 30.0%
!!! GGTTTTGTTTTCTTTTGTCT+TGG - chr1_4:16582470-16582489 Msa0153330:intron 30.0%
! TCAAATTTTACGGTCAACTA+GGG - chr1_4:16582672-16582691 Msa0153330:intron 30.0%
! TGTTTTCTCAAAGATTTTCC+GGG - chr1_4:16582806-16582825 Msa0153330:intron 30.0%
!! TTAAAAAGGTGCTATATTCC+CGG + chr1_4:16582827-16582846 None:intergenic 30.0%
ATTAATGCAAACTGTCTCAT+GGG + chr1_4:16582901-16582920 None:intergenic 30.0%
AATTAATGCAAACTGTCTCA+TGG + chr1_4:16582902-16582921 None:intergenic 30.0%
AGACAGTTTGCATTAATTGA+GGG - chr1_4:16582904-16582923 Msa0153330:intron 30.0%
! TGTTGGTGTGTATAAGATTT+TGG - chr1_4:16583034-16583053 Msa0153330:intron 30.0%
GCAATATGCTTCATCTAATT+GGG + chr1_4:16583442-16583461 None:intergenic 30.0%
TGCAATATGCTTCATCTAAT+TGG + chr1_4:16583443-16583462 None:intergenic 30.0%
! AAGAGAGTATATTGCATGTA+AGG - chr1_4:16583474-16583493 Msa0153330:intron 30.0%
! AGAGAGTATATTGCATGTAA+GGG - chr1_4:16583475-16583494 Msa0153330:intron 30.0%
ATAGTGTAATAAGTCGATCA+TGG - chr1_4:16583505-16583524 Msa0153330:intron 30.0%
! AGGTCACCCAAATTATATTT+TGG - chr1_4:16583530-16583549 Msa0153330:intron 30.0%
! CTAATAAGGAGTGTGAAAAA+TGG + chr1_4:16583575-16583594 None:intergenic 30.0%
AAGGTGGTGTAATACTAATA+AGG + chr1_4:16583589-16583608 None:intergenic 30.0%
!! AGATAGACTTTTAAGTAAGG+TGG + chr1_4:16583605-16583624 None:intergenic 30.0%
! TTTTTCTTTCTTCCCTTTAG+AGG - chr1_4:16583668-16583687 Msa0153330:intron 30.0%
TGAGTGAATAAACCTCTAAA+GGG + chr1_4:16583683-16583702 None:intergenic 30.0%
TTGAGTGAATAAACCTCTAA+AGG + chr1_4:16583684-16583703 None:intergenic 30.0%
TTTAGAGGTTTATTCACTCA+AGG - chr1_4:16583683-16583702 Msa0153330:intron 30.0%
CTGCATGAGAAATAATTCTA+AGG + chr1_4:16583739-16583758 None:intergenic 30.0%
! ATTATTTCTCATGCAGACAA+TGG - chr1_4:16583743-16583762 Msa0153330:intron 30.0%
ATGTGTGTTTGCATTATGAA+TGG + chr1_4:16584092-16584111 None:intergenic 30.0%
ATTCATAATGCAAACACACA+TGG - chr1_4:16584091-16584110 Msa0153330:intron 30.0%
! TCCAATGTTATGATTTTTGC+AGG - chr1_4:16584247-16584266 Msa0153330:intron 30.0%
AAAATAGATGAGTTGCCAAA+GGG + chr1_4:16584350-16584369 None:intergenic 30.0%
!! GCTTAATATGTTGTTGTTTG+TGG + chr1_4:16584424-16584443 None:intergenic 30.0%
AACAACAACATATTAAGCCT+AGG - chr1_4:16584426-16584445 Msa0153330:CDS 30.0%
!!! TGTTCATATTTTGGTGTACA+AGG + chr1_4:16584459-16584478 None:intergenic 30.0%
! GATGATGATGATTGATGTAA+AGG + chr1_4:16584495-16584514 None:intergenic 30.0%
CAATCATCATCATCATCATT+TGG - chr1_4:16584501-16584520 Msa0153330:CDS 30.0%
TCTTGTTGGAAAGTTTGATT+TGG + chr1_4:16584576-16584595 None:intergenic 30.0%
AAACAACTTCATCTTCATCA+TGG - chr1_4:16584621-16584640 Msa0153330:CDS 30.0%
! AGGATCAGATAAATTGACTT+TGG - chr1_4:16585118-16585137 Msa0153330:intron 30.0%
TTCATCATCTACACCTTTCT+TGG - chr1_4:16580460-16580479 Msa0153330:CDS 35.0%
TCTTGTCTGATTTCCAAGAA+AGG + chr1_4:16580476-16580495 None:intergenic 35.0%
!! AATGCATAAAGGTACTTGCA+TGG + chr1_4:16580605-16580624 None:intergenic 35.0%
! CAAATCTGTTTGTTGCCATT+AGG + chr1_4:16581090-16581109 None:intergenic 35.0%
GTATGTGAAGTGTGTCAAAA+AGG - chr1_4:16581109-16581128 Msa0153330:CDS 35.0%
TGTGTCAAAAAGGGTTTCAA+AGG - chr1_4:16581119-16581138 Msa0153330:CDS 35.0%
GTGTCAAAAAGGGTTTCAAA+GGG - chr1_4:16581120-16581139 Msa0153330:CDS 35.0%
TAACAAAGAGCCAAAGAGAA+AGG - chr1_4:16581204-16581223 Msa0153330:CDS 35.0%
!! AAGCACTTTTCTAGAAAGCA+TGG - chr1_4:16581301-16581320 Msa0153330:CDS 35.0%
!! AAAGCTCATTCTAAGACTTG+TGG - chr1_4:16581382-16581401 Msa0153330:CDS 35.0%
!! ATTCTAAGACTTGTGGTACT+AGG - chr1_4:16581389-16581408 Msa0153330:CDS 35.0%
!! TTCTAAGACTTGTGGTACTA+GGG - chr1_4:16581390-16581409 Msa0153330:CDS 35.0%
GACAATGCATAGAATATGCA+AGG - chr1_4:16581831-16581850 Msa0153330:intron 35.0%
!!! AATTTTTTTTGGTGTTGGCC+GGG + chr1_4:16581871-16581890 None:intergenic 35.0%
TGTGTGTGTTACAATCTTCA+TGG + chr1_4:16582041-16582060 None:intergenic 35.0%
AATCCATAAGAAACTAGGTG+AGG + chr1_4:16582068-16582087 None:intergenic 35.0%
CTTGGAATCCATAAGAAACT+AGG + chr1_4:16582073-16582092 None:intergenic 35.0%
ACGTGAGTACACTGTATAAA+TGG - chr1_4:16582271-16582290 Msa0153330:intron 35.0%
CGTGAGTACACTGTATAAAT+GGG - chr1_4:16582272-16582291 Msa0153330:intron 35.0%
GTGAGTACACTGTATAAATG+GGG - chr1_4:16582273-16582292 Msa0153330:intron 35.0%
CTCGTTTAACAACATGTGAA+TGG + chr1_4:16582406-16582425 None:intergenic 35.0%
AATCTATTGTATGATGCAGC+TGG - chr1_4:16582610-16582629 Msa0153330:intron 35.0%
! CTCAAATTTTACGGTCAACT+AGG - chr1_4:16582671-16582690 Msa0153330:intron 35.0%
CCATTGACCATTATAAGAGA+TGG + chr1_4:16582710-16582729 None:intergenic 35.0%
CCATCTCTTATAATGGTCAA+TGG - chr1_4:16582707-16582726 Msa0153330:intron 35.0%
GAGACAGTTTGCATTAATTG+AGG - chr1_4:16582903-16582922 Msa0153330:intron 35.0%
!! AAGATTTTGGCATAATCCCA+TGG - chr1_4:16583047-16583066 Msa0153330:intron 35.0%
!! AGATTTTGGCATAATCCCAT+GGG - chr1_4:16583048-16583067 Msa0153330:intron 35.0%
ATCTATACTTTACCCGTGTA+TGG + chr1_4:16583249-16583268 None:intergenic 35.0%
TCACTAGCTAGGTTCTTATT+TGG - chr1_4:16583369-16583388 Msa0153330:intron 35.0%
GTAATAAGTCGATCATGGTA+AGG - chr1_4:16583510-16583529 Msa0153330:intron 35.0%
AAAATATGTCCTAGGTGTGA+TGG + chr1_4:16583642-16583661 None:intergenic 35.0%
ACCCTATACTAATGTCTGAA+CGG - chr1_4:16583912-16583931 Msa0153330:intron 35.0%
ACCGTTCAGACATTAGTATA+GGG + chr1_4:16583916-16583935 None:intergenic 35.0%
TACCGTTCAGACATTAGTAT+AGG + chr1_4:16583917-16583936 None:intergenic 35.0%
GCCTGCAAAAATCATAACAT+TGG + chr1_4:16584251-16584270 None:intergenic 35.0%
TGACAGTTTCATCACTCATA+GGG - chr1_4:16584272-16584291 Msa0153330:intron 35.0%
GAAAATAGATGAGTTGCCAA+AGG + chr1_4:16584351-16584370 None:intergenic 35.0%
TTTGGATCAGTGATGAAGAA+AGG + chr1_4:16584558-16584577 None:intergenic 35.0%
TTGAGAATTGTCCTTGATGA+AGG + chr1_4:16584599-16584618 None:intergenic 35.0%
TTGGTATTTCCTTGAAGATC+AGG + chr1_4:16584660-16584679 None:intergenic 35.0%
! CGAAGAAGTTGTGTTGTTAT+TGG + chr1_4:16584679-16584698 None:intergenic 35.0%
TAACAACACAACTTCTTCGT+CGG - chr1_4:16584680-16584699 Msa0153330:intron 35.0%
GGAAAGAAGCTTAGGTTAAA+AGG + chr1_4:16584711-16584730 None:intergenic 35.0%
TGGTATTTGGAAAGAAGCTT+AGG + chr1_4:16584719-16584738 None:intergenic 35.0%
AGCTTCTTTCCAAATACCAA+TGG - chr1_4:16584720-16584739 Msa0153330:intron 35.0%
! GTGTTGTTACCATTGGTATT+TGG + chr1_4:16584732-16584751 None:intergenic 35.0%
! ATGCATTGTGTTGTTACCAT+TGG + chr1_4:16584739-16584758 None:intergenic 35.0%
GAAAAACCTTCATGTTGATG+AGG + chr1_4:16584795-16584814 None:intergenic 35.0%
! GAAGGTTTTTCTTCACTCTT+TGG - chr1_4:16584804-16584823 Msa0153330:intron 35.0%
CTTCAAAAAGCTGCTCAAAT+TGG - chr1_4:16584888-16584907 Msa0153330:intron 35.0%
GAACAACATCAACATCTACA+TGG - chr1_4:16584957-16584976 Msa0153330:CDS 35.0%
TTGATGAACTCTCTTGGTAA+TGG - chr1_4:16584981-16585000 Msa0153330:intron 35.0%
! AGACTTTGTTGTGATGATGA+TGG + chr1_4:16585077-16585096 None:intergenic 35.0%
TCATCACAACAAAGTCTAGT+TGG - chr1_4:16585080-16585099 Msa0153330:intron 35.0%
!! CTAGTTGGTAATTTGTGCTT+TGG - chr1_4:16585095-16585114 Msa0153330:intron 35.0%
!! ACTTTGGATTTTCTTGGTGT+TGG - chr1_4:16585134-16585153 Msa0153330:CDS 35.0%
AGAAACATGAGTAGTCATAG+TGG - chr1_4:16585167-16585186 Msa0153330:CDS 35.0%
GAACAACATGGATCCTAAAT+TGG - chr1_4:16585238-16585257 Msa0153330:CDS 35.0%
!! CCTTGTGTTGATTCCAATTT+AGG + chr1_4:16585254-16585273 None:intergenic 35.0%
CCTAAATTGGAATCAACACA+AGG - chr1_4:16585251-16585270 Msa0153330:CDS 35.0%
ACTATCTCCAAAGACCCTAA+TGG - chr1_4:16581072-16581091 Msa0153330:CDS 40.0%
TTTGTTGCCATTAGGGTCTT+TGG + chr1_4:16581082-16581101 None:intergenic 40.0%
!! CTCTTTTGCTTTAGCTTCCA+AGG + chr1_4:16581184-16581203 None:intergenic 40.0%
AGTGCTTCTTAATTCCAGTG+AGG + chr1_4:16581288-16581307 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG - chr1_4:16581314-16581333 Msa0153330:CDS 40.0%
CTCAGTAGTGAATGACAATG+TGG + chr1_4:16581496-16581515 None:intergenic 40.0%
GGAGGATCCATAATTGAAAC+TGG - chr1_4:16581573-16581592 Msa0153330:intron 40.0%
TGCATAGAATATGCAAGGTC+CGG - chr1_4:16581836-16581855 Msa0153330:intron 40.0%
TGTCCTCACCTAGTTTCTTA+TGG - chr1_4:16582062-16582081 Msa0153330:intron 40.0%
!! AGTTTATGCGTGGGTTTTAG+TGG - chr1_4:16582213-16582232 Msa0153330:intron 40.0%
! TCACATGAGTTGAACTTGCT+TGG - chr1_4:16582449-16582468 Msa0153330:intron 40.0%
CAGTTTGCATTAATTGAGGG+TGG - chr1_4:16582907-16582926 Msa0153330:intron 40.0%
TGCTTTCAGTGATCAAAGAG+AGG - chr1_4:16582984-16583003 Msa0153330:intron 40.0%
GCTTTCAGTGATCAAAGAGA+GGG - chr1_4:16582985-16583004 Msa0153330:intron 40.0%
CTCAAAGTGGTAGTTCGATA+AGG - chr1_4:16583008-16583027 Msa0153330:intron 40.0%
GTAGTTCGATAAGGAGTTGT+TGG - chr1_4:16583017-16583036 Msa0153330:intron 40.0%
AATGAAAAAAGAGGGCCCAT+GGG + chr1_4:16583066-16583085 None:intergenic 40.0%
TCTTTGTGTAGTCACTAGCT+AGG - chr1_4:16583358-16583377 Msa0153330:intron 40.0%
TTCATTTGTCCATCACACCT+AGG - chr1_4:16583630-16583649 Msa0153330:intron 40.0%
! TCTCATGCAGACAATGGTTT+TGG - chr1_4:16583749-16583768 Msa0153330:intron 40.0%
! AGAGTACTTAACCCACAACT+CGG - chr1_4:16583987-16584006 Msa0153330:intron 40.0%
TTGTACTTATCCCGAGTTGT+GGG + chr1_4:16584001-16584020 None:intergenic 40.0%
ACAACTCGGGATAAGTACAA+GGG - chr1_4:16584001-16584020 Msa0153330:intron 40.0%
GTGACAGTTTCATCACTCAT+AGG - chr1_4:16584271-16584290 Msa0153330:intron 40.0%
TCCACAAACCACATGAGTTT+AGG - chr1_4:16584369-16584388 Msa0153330:CDS 40.0%
ACCTAAACTCATGTGGTTTG+TGG + chr1_4:16584373-16584392 None:intergenic 40.0%
GTGTACAAGGAATGTTACCT+AGG + chr1_4:16584446-16584465 None:intergenic 40.0%
ATCAGTGATGAAGAAAGGTG+AGG + chr1_4:16584553-16584572 None:intergenic 40.0%
TTCCAACAAGACCTTCATCA+AGG - chr1_4:16584585-16584604 Msa0153330:CDS 40.0%
ATGCAACTTCCTGATCTTCA+AGG - chr1_4:16584648-16584667 Msa0153330:CDS 40.0%
CATCATCCTCATCAACATGA+AGG - chr1_4:16584786-16584805 Msa0153330:intron 40.0%
ACGACTATCAACAACAGCAA+TGG - chr1_4:16584921-16584940 Msa0153330:CDS 40.0%
CATGGTTTGATGAACTCTCT+TGG - chr1_4:16584975-16584994 Msa0153330:intron 40.0%
TGGTCAGTTTCACAATGTTG+AGG - chr1_4:16585034-16585053 Msa0153330:intron 40.0%
TCAGTTTCACAATGTTGAGG+AGG - chr1_4:16585037-16585056 Msa0153330:intron 40.0%
!! GTTGGTAATTTGTGCTTTGG+AGG - chr1_4:16585098-16585117 Msa0153330:intron 40.0%
!!! TTGGATTTTCTTGGTGTTGG+AGG - chr1_4:16585137-16585156 Msa0153330:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG - chr1_4:16585142-16585161 Msa0153330:CDS 40.0%
AACATGAGTAGTCATAGTGG+TGG - chr1_4:16585170-16585189 Msa0153330:CDS 40.0%
CATGTTGTTCATTGCACTCA+TGG + chr1_4:16585228-16585247 None:intergenic 40.0%
CATGAGTGCAATGAACAACA+TGG - chr1_4:16585226-16585245 Msa0153330:CDS 40.0%
!! AGCAGTTGATGAAGCATCTG+TGG + chr1_4:16580534-16580553 None:intergenic 45.0%
GAAAACAGATCCAGATGCAG+AGG - chr1_4:16581042-16581061 Msa0153330:CDS 45.0%
GAAGAGGACACAATTTGCCT+TGG - chr1_4:16581164-16581183 Msa0153330:CDS 45.0%
!! TGGTGAACACATGTTGGTTC+TGG + chr1_4:16581241-16581260 None:intergenic 45.0%
TGTTCACCATGACCCTTCAA+GGG - chr1_4:16581252-16581271 Msa0153330:CDS 45.0%
! AGGGAGTATAGATGTGACTG+TGG - chr1_4:16581409-16581428 Msa0153330:CDS 45.0%
ACTGTGGTACTCTCTTCTCA+AGG - chr1_4:16581425-16581444 Msa0153330:CDS 45.0%
GCATAGAATATGCAAGGTCC+GGG - chr1_4:16581837-16581856 Msa0153330:intron 45.0%
CATAGAATATGCAAGGTCCG+GGG - chr1_4:16581838-16581857 Msa0153330:intron 45.0%
!! TTATGCGTGGGTTTTAGTGG+AGG - chr1_4:16582216-16582235 Msa0153330:intron 45.0%
!! GTGGGTTTTAGTGGAGGATA+TGG - chr1_4:16582222-16582241 Msa0153330:intron 45.0%
AGGATATGGCAGTGTGAATG+TGG - chr1_4:16582236-16582255 Msa0153330:intron 45.0%
ATCAAAGAGAGGGCTCAAAG+TGG - chr1_4:16582995-16583014 Msa0153330:intron 45.0%
CAATGAAAAAAGAGGGCCCA+TGG + chr1_4:16583067-16583086 None:intergenic 45.0%
GAGTACTTAACCCACAACTC+GGG - chr1_4:16583988-16584007 Msa0153330:intron 45.0%
CTTGTACTTATCCCGAGTTG+TGG + chr1_4:16584002-16584021 None:intergenic 45.0%
CACAACTCGGGATAAGTACA+AGG - chr1_4:16584000-16584019 Msa0153330:intron 45.0%
CAACTCGGGATAAGTACAAG+GGG - chr1_4:16584002-16584021 Msa0153330:intron 45.0%
CCAAAGGGTTCATGTTGGAA+GGG + chr1_4:16584335-16584354 None:intergenic 45.0%
AGTTGCCAAAGGGTTCATGT+TGG + chr1_4:16584340-16584359 None:intergenic 45.0%
GGGATAGACCTAAACTCATG+TGG + chr1_4:16584380-16584399 None:intergenic 45.0%
TCCTTGTTGGGTGCTTATCT+GGG + chr1_4:16584400-16584419 None:intergenic 45.0%
GTTGTTTGTGGCTCCTTGTT+GGG + chr1_4:16584412-16584431 None:intergenic 45.0%
! TGTTGTTTGTGGCTCCTTGT+TGG + chr1_4:16584413-16584432 None:intergenic 45.0%
! GTCCTTGATGAAGGTCTTGT+TGG + chr1_4:16584590-16584609 None:intergenic 45.0%
ATGAGTAGTCATAGTGGTGG+AGG - chr1_4:16585173-16585192 Msa0153330:CDS 45.0%
!!! TAAATTATGTTTTAATTTTT+AGG + chr1_4:16583824-16583843 None:intergenic 5.0%
AGGTACTTGCATGGTGTTCC+AGG + chr1_4:16580596-16580615 None:intergenic 50.0%
AGTGCTATCACCTCTGCATC+TGG + chr1_4:16581055-16581074 None:intergenic 50.0%
GGGTCATGGTGAACACATGT+TGG + chr1_4:16581247-16581266 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG - chr1_4:16581251-16581270 Msa0153330:CDS 50.0%
CCCTTCCAACATGAACCCTT+TGG - chr1_4:16584332-16584351 Msa0153330:CDS 50.0%
GCCAAAGGGTTCATGTTGGA+AGG + chr1_4:16584336-16584355 None:intergenic 50.0%
TCCCAGATAAGCACCCAACA+AGG - chr1_4:16584396-16584415 Msa0153330:CDS 50.0%
CTCCTTGTTGGGTGCTTATC+TGG + chr1_4:16584401-16584420 None:intergenic 50.0%
GTTGTCTTCGCCACACATGT+CGG - chr1_4:16584854-16584873 Msa0153330:intron 50.0%
AATGCAGTTGCCGACATGTG+TGG + chr1_4:16584867-16584886 None:intergenic 50.0%
CAAGAGCCCTTGAAGGGTCA+TGG + chr1_4:16581261-16581280 None:intergenic 55.0%
CATGACCCTTCAAGGGCTCT+TGG - chr1_4:16581259-16581278 Msa0153330:CDS 55.0%
GGTCACCAAGAGCCCTTGAA+GGG + chr1_4:16581267-16581286 None:intergenic 55.0%
AGGTCACCAAGAGCCCTTGA+AGG + chr1_4:16581268-16581287 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_4:16581807-16581826 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_4:16581804-16581823 Msa0153330:intron 55.0%
! TTGAGGGTGGCCCCATTTTG+TGG - chr1_4:16582920-16582939 Msa0153330:intron 55.0%
! AGGGCTCTTGGTGACCTCAC+TGG - chr1_4:16581271-16581290 Msa0153330:CDS 60.0%
AAGGTCCGGGGTTCGAATCC+CGG - chr1_4:16581850-16581869 Msa0153330:intron 60.0%
GTTGGCCGGGATTCGAACCC+CGG + chr1_4:16581858-16581877 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 16580449 16585289 16580449 ID=Msa0153330;Name=Msa0153330
chr1_4 mRNA 16580449 16585289 16580449 ID=Msa0153330-mRNA-1;Parent=Msa0153330;Name=Msa0153330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|1|1|4|0|548
chr1_4 exon 16585129 16585289 16585129 ID=Msa0153330-mRNA-1:exon:6359;Parent=Msa0153330-mRNA-1
chr1_4 exon 16584920 16584987 16584920 ID=Msa0153330-mRNA-1:exon:6358;Parent=Msa0153330-mRNA-1
chr1_4 exon 16584292 16584688 16584292 ID=Msa0153330-mRNA-1:exon:6357;Parent=Msa0153330-mRNA-1
chr1_4 exon 16580449 16581469 16580449 ID=Msa0153330-mRNA-1:exon:6356;Parent=Msa0153330-mRNA-1
chr1_4 CDS 16585129 16585289 16585129 ID=Msa0153330-mRNA-1:cds;Parent=Msa0153330-mRNA-1
chr1_4 CDS 16584920 16584987 16584920 ID=Msa0153330-mRNA-1:cds;Parent=Msa0153330-mRNA-1
chr1_4 CDS 16584292 16584688 16584292 ID=Msa0153330-mRNA-1:cds;Parent=Msa0153330-mRNA-1
chr1_4 CDS 16580449 16581469 16580449 ID=Msa0153330-mRNA-1:cds;Parent=Msa0153330-mRNA-1
Gene Sequence

>Msa0153330

ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATGCAATATAGGGTTATCAAGTTTTTCTAATGAAAAGTGGTTTGAAATTGAATGGGAAATCTTCTTCCCTCTATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAGATAAGCACCCAACAAGGAGCCACAAACAACAACATATTAAGCCTAGGTAACATTCCTTGTACACCAAAATATGAACATCATCTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCAAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCCTCATCAACATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCAACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACGACTATCAACAACAGCAATGGTGTAGAATCTGATGAACAACATCAACATCTACATGGTTTGATGAACTCTCTTGGTAATGGAAATACTTCAATATATGATAACAATAATCTTGGTCAGTTTCACAATGTTGAGGAGGAGAATAAAAAGATGCCATCATCATCACAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAGTCATAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA
Protein sequence

>Msa0153330

MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPCNIGLSSFSNEKWFEIEWEIFFPLYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHPHQHEGFSSLFGNSSMQQENMLSSPHMSATALLQKAAQIGSTTTTINNSNGVESDEQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMPSSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMSSHSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF*