Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014530 | XP_024639364.1 | 88.936 | 235 | 7 | 2 | 1 | 216 | 1 | 235 | 2.19e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014530 | sp|Q9FMX2|TCP7_ARATH | 50.996 | 251 | 60 | 6 | 10 | 216 | 19 | 250 | 6.11e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0014530 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014530 | Msa0154400 | 0.885030 | 1.154537e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014530 | MtrunA17_Chr1g0164881 | 88.936 | 235 | 7 | 2 | 1 | 216 | 1 | 235 | 2.01e-149 | 414 |
| Msa0014530 | MtrunA17_Chr1g0211941 | 56.327 | 245 | 54 | 5 | 16 | 214 | 18 | 255 | 2.55e-72 | 220 |
| Msa0014530 | MtrunA17_Chr7g0224581 | 59.551 | 89 | 32 | 1 | 1 | 85 | 15 | 103 | 1.82e-29 | 110 |
| Msa0014530 | MtrunA17_Chr1g0180911 | 76.562 | 64 | 12 | 1 | 25 | 85 | 39 | 102 | 4.27e-29 | 107 |
| Msa0014530 | MtrunA17_Chr2g0277361 | 75.362 | 69 | 14 | 1 | 20 | 85 | 115 | 183 | 9.29e-29 | 111 |
| Msa0014530 | MtrunA17_Chr5g0416581 | 79.365 | 63 | 8 | 1 | 28 | 85 | 58 | 120 | 2.20e-28 | 109 |
| Msa0014530 | MtrunA17_Chr4g0060601 | 70.423 | 71 | 17 | 1 | 19 | 85 | 80 | 150 | 6.51e-28 | 109 |
| Msa0014530 | MtrunA17_Chr1g0204001 | 64.198 | 81 | 28 | 1 | 5 | 84 | 36 | 116 | 3.40e-27 | 105 |
| Msa0014530 | MtrunA17_Chr8g0350941 | 75.862 | 58 | 14 | 0 | 28 | 85 | 76 | 133 | 1.38e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014530 | AT5G23280.1 | 50.996 | 251 | 60 | 6 | 10 | 216 | 19 | 250 | 6.21e-62 | 194 |
| Msa0014530 | AT5G08330.1 | 53.394 | 221 | 59 | 7 | 27 | 214 | 26 | 235 | 1.69e-51 | 167 |
| Msa0014530 | AT1G72010.1 | 85.965 | 57 | 8 | 0 | 29 | 85 | 60 | 116 | 2.37e-29 | 112 |
| Msa0014530 | AT3G27010.2 | 61.957 | 92 | 26 | 2 | 3 | 85 | 40 | 131 | 8.07e-29 | 110 |
| Msa0014530 | AT3G27010.1 | 61.957 | 92 | 26 | 2 | 3 | 85 | 40 | 131 | 8.07e-29 | 110 |
| Msa0014530 | AT3G47620.1 | 76.119 | 67 | 11 | 1 | 24 | 85 | 104 | 170 | 9.29e-29 | 112 |
| Msa0014530 | AT1G69690.1 | 68.000 | 75 | 19 | 1 | 16 | 85 | 31 | 105 | 1.18e-28 | 110 |
| Msa0014530 | AT1G35560.1 | 87.719 | 57 | 7 | 0 | 29 | 85 | 52 | 108 | 1.53e-27 | 107 |
| Msa0014530 | AT1G58100.1 | 85.185 | 54 | 8 | 0 | 32 | 85 | 60 | 113 | 1.85e-27 | 108 |
| Msa0014530 | AT5G51910.1 | 80.702 | 57 | 11 | 0 | 28 | 84 | 53 | 109 | 2.06e-26 | 103 |
| Msa0014530 | AT5G51910.2 | 80.702 | 57 | 11 | 0 | 28 | 84 | 53 | 109 | 2.06e-26 | 103 |
| Msa0014530 | AT2G45680.1 | 74.576 | 59 | 15 | 0 | 27 | 85 | 70 | 128 | 5.89e-26 | 103 |
| Msa0014530 | AT5G41030.1 | 70.690 | 58 | 17 | 0 | 28 | 85 | 64 | 121 | 2.80e-25 | 99.4 |
| Msa0014530 | AT2G37000.1 | 74.074 | 54 | 14 | 0 | 32 | 85 | 43 | 96 | 8.93e-24 | 94.0 |
| Msa0014530 | AT3G45150.1 | 58.491 | 53 | 22 | 0 | 33 | 85 | 18 | 70 | 3.57e-16 | 73.6 |
| Msa0014530 | AT1G58100.2 | 87.879 | 33 | 4 | 0 | 32 | 64 | 60 | 92 | 1.06e-13 | 69.3 |
Find 57 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACGTGCGGCGCAGATTA+TGG | 0.191163 | 1_1:+23028722 | None:intergenic |
| CAACCTTCTCCGTTTATTCT+TGG | 0.258658 | 1_1:-23028449 | Msa0014530:CDS |
| AATTTGTTGGCTTCTTTGTC+TGG | 0.298075 | 1_1:-23028134 | Msa0014530:CDS |
| GAAGCTTCGGCGGCGAGGTT+AGG | 0.304875 | 1_1:-23028179 | Msa0014530:CDS |
| TCAACAGCAACAAGGCTCTA+TGG | 0.307887 | 1_1:-23028204 | Msa0014530:CDS |
| GTTGATGCTGCTGGTGGTGC+TGG | 0.308604 | 1_1:+23028222 | None:intergenic |
| GACCAAGCTCACGTGTTAAC+TGG | 0.329708 | 1_1:+23028697 | None:intergenic |
| GCTGCTGGTGGTGCTGGTGC+TGG | 0.334270 | 1_1:+23028228 | None:intergenic |
| TCCTGGTCATCTGAATTTGT+TGG | 0.361921 | 1_1:-23028147 | Msa0014530:CDS |
| ACACGTGCGGCGCAGATTAT+GGG | 0.390746 | 1_1:+23028723 | None:intergenic |
| TCTGGTGGGAATGGAAATTC+TGG | 0.392842 | 1_1:-23028116 | Msa0014530:CDS |
| CTTGTTGCTGTTGATGCTGC+TGG | 0.395955 | 1_1:+23028213 | None:intergenic |
| GCTTCTTTGTCTGGTGGGAA+TGG | 0.400922 | 1_1:-23028125 | Msa0014530:CDS |
| TGCTGCACCTACTGCTCCGC+CGG | 0.410157 | 1_1:-23028387 | Msa0014530:CDS |
| TGATGATGGTGATGCTGTTT+CGG | 0.418538 | 1_1:-23028411 | Msa0014530:CDS |
| AAGCTTCGGCGGCGAGGTTA+GGG | 0.419803 | 1_1:-23028178 | Msa0014530:CDS |
| AACGGAGAAGGTTGAAGAAA+AGG | 0.424552 | 1_1:+23028458 | None:intergenic |
| CTACTGCTCCGCCGGGGTTG+TGG | 0.429297 | 1_1:-23028379 | Msa0014530:CDS |
| TGCTGCTGCTCAACCGCCGC+CGG | 0.429682 | 1_1:-23028324 | Msa0014530:CDS |
| TCCGCCGGGGTTGTGGCGGC+CGG | 0.445867 | 1_1:-23028372 | Msa0014530:CDS |
| GCTGCTCAACCGCCGCCGGA+AGG | 0.449544 | 1_1:-23028320 | Msa0014530:CDS |
| TGTTGGCTTCTTTGTCTGGT+GGG | 0.463873 | 1_1:-23028130 | Msa0014530:CDS |
| CTCCAAAGCTGAGCAAAATC+CGG | 0.465288 | 1_1:+23028353 | None:intergenic |
| AAACGTTTACCAAGAATAAA+CGG | 0.469719 | 1_1:+23028440 | None:intergenic |
| CAACAGCAACAAGGCTCTAT+GGG | 0.478969 | 1_1:-23028203 | Msa0014530:CDS |
| GCTGCACCTACTGCTCCGCC+GGG | 0.481411 | 1_1:-23028386 | Msa0014530:CDS |
| AGGTTAGGGAATTATCTTCC+TGG | 0.487752 | 1_1:-23028164 | Msa0014530:CDS |
| TTGTTGGCTTCTTTGTCTGG+TGG | 0.494973 | 1_1:-23028131 | Msa0014530:CDS |
| AGAAGTGGGTTCTACTAGAT+CGG | 0.502592 | 1_1:+23028827 | None:intergenic |
| AGGCTCTATGGGTGAAGCTT+CGG | 0.504366 | 1_1:-23028192 | Msa0014530:CDS |
| TGATCGACGGTTCAGCTTGA+CGG | 0.511819 | 1_1:+23028640 | None:intergenic |
| TTCCAGTTAACACGTGAGCT+TGG | 0.518020 | 1_1:-23028699 | Msa0014530:CDS |
| TTCCGTCTACTTTACTGTGA+CGG | 0.524053 | 1_1:+23028766 | None:intergenic |
| AAATCCGGCCGCCACAACCC+CGG | 0.536662 | 1_1:+23028368 | None:intergenic |
| CACAGTAAAGTAGACGGAAG+AGG | 0.537838 | 1_1:-23028762 | Msa0014530:CDS |
| GGGAATGGAAATTCTGGTCG+TGG | 0.548380 | 1_1:-23028110 | Msa0014530:CDS |
| TAGATCGGTTGTTGTGGTGA+TGG | 0.550869 | 1_1:+23028842 | None:intergenic |
| TTCTACTAGATCGGTTGTTG+TGG | 0.553500 | 1_1:+23028836 | None:intergenic |
| GCCAACAAATTCAGATGACC+AGG | 0.560326 | 1_1:+23028146 | None:intergenic |
| TGATGGTTGTTGTTTCCTTG+TGG | 0.580553 | 1_1:+23028859 | None:intergenic |
| CTGCTCCGCCGGGGTTGTGG+CGG | 0.587464 | 1_1:-23028376 | Msa0014530:CDS |
| CACAACCCCGGCGGAGCAGT+AGG | 0.587750 | 1_1:+23028380 | None:intergenic |
| GTTGCTGTTGATGCTGCTGG+TGG | 0.588478 | 1_1:+23028216 | None:intergenic |
| CTCTATGGGTGAAGCTTCGG+CGG | 0.604764 | 1_1:-23028189 | Msa0014530:CDS |
| TTACCAAGAATAAACGGAGA+AGG | 0.605589 | 1_1:+23028446 | None:intergenic |
| TTCTGGTCGTGGAGACGATG+AGG | 0.610379 | 1_1:-23028099 | Msa0014530:CDS |
| CCATTCGATAGTTTGACCGT+CGG | 0.631339 | 1_1:+23028668 | None:intergenic |
| CAGCAGCATCAACAGCAACA+AGG | 0.632046 | 1_1:-23028212 | Msa0014530:CDS |
| ACCTCAAATGTCTAACCACA+AGG | 0.638869 | 1_1:-23028874 | None:intergenic |
| GACCGTCACAGTAAAGTAGA+CGG | 0.641647 | 1_1:-23028768 | Msa0014530:CDS |
| CCGACGGTCAAACTATCGAA+TGG | 0.646959 | 1_1:-23028668 | Msa0014530:CDS |
| TGGGTGAAGCTTCGGCGGCG+AGG | 0.659727 | 1_1:-23028184 | Msa0014530:CDS |
| AAACGTTTACGTGATGATGA+TGG | 0.660458 | 1_1:-23028425 | Msa0014530:CDS |
| TCCGGCCGCCACAACCCCGG+CGG | 0.666178 | 1_1:+23028371 | None:intergenic |
| GAGCTTGGTCATAAATCCGA+CGG | 0.680249 | 1_1:-23028684 | Msa0014530:CDS |
| CTGCACCTACTGCTCCGCCG+GGG | 0.707227 | 1_1:-23028385 | Msa0014530:CDS |
| TGTTAACTGGAAAACACGTG+CGG | 0.728936 | 1_1:+23028710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAACGTTTACCAAGAATAAA+CGG | + | chr1_1:23028521-23028540 | None:intergenic | 25.0% |
| ! | AAACGTTTACCAAGAATAAA+CGG | + | chr1_1:23028521-23028540 | None:intergenic | 25.0% |
| !!! | GTTAGAGTGTTTTGAGAAGT+GGG | + | chr1_1:23028148-23028167 | None:intergenic | 35.0% |
| !!! | TGTTAGAGTGTTTTGAGAAG+TGG | + | chr1_1:23028149-23028168 | None:intergenic | 35.0% |
| ! | NNNNNNNNNNGTACCGGTGG+CGG | + | chr1_1:23028347-23028366 | None:intergenic | 35.0% |
| TTACCAAGAATAAACGGAGA+AGG | + | chr1_1:23028515-23028534 | None:intergenic | 35.0% | |
| ! | AAACGTTTACGTGATGATGA+TGG | - | chr1_1:23028533-23028552 | Msa0014530:intron | 35.0% |
| TGAGAAACAGAAAAACCTTC+CGG | + | chr1_1:23028656-23028675 | None:intergenic | 35.0% | |
| !! | AATTTGTTGGCTTCTTTGTC+TGG | - | chr1_1:23028824-23028843 | Msa0014530:CDS | 35.0% |
| !!! | GTTAGAGTGTTTTGAGAAGT+GGG | + | chr1_1:23028148-23028167 | None:intergenic | 35.0% |
| !!! | TGTTAGAGTGTTTTGAGAAG+TGG | + | chr1_1:23028149-23028168 | None:intergenic | 35.0% |
| ! | NNNNNNNNNNGTACCGGTGG+CGG | + | chr1_1:23028347-23028366 | None:intergenic | 35.0% |
| TTACCAAGAATAAACGGAGA+AGG | + | chr1_1:23028515-23028534 | None:intergenic | 35.0% | |
| ! | AAACGTTTACGTGATGATGA+TGG | - | chr1_1:23028533-23028552 | Msa0014530:intron | 35.0% |
| TGAGAAACAGAAAAACCTTC+CGG | + | chr1_1:23028656-23028675 | None:intergenic | 35.0% | |
| !! | AATTTGTTGGCTTCTTTGTC+TGG | - | chr1_1:23028824-23028843 | Msa0014530:CDS | 35.0% |
| !! | TGATGGTTGTTGTTTCCTTG+TGG | + | chr1_1:23028102-23028121 | None:intergenic | 40.0% |
| TTCTACTAGATCGGTTGTTG+TGG | + | chr1_1:23028125-23028144 | None:intergenic | 40.0% | |
| ! | AGAAGTGGGTTCTACTAGAT+CGG | + | chr1_1:23028134-23028153 | None:intergenic | 40.0% |
| ! | TTACTGTGACGGTCTTTTGA+CGG | + | chr1_1:23028184-23028203 | None:intergenic | 40.0% |
| TTCCGTCTACTTTACTGTGA+CGG | + | chr1_1:23028195-23028214 | None:intergenic | 40.0% | |
| TGTTAACTGGAAAACACGTG+CGG | + | chr1_1:23028251-23028270 | None:intergenic | 40.0% | |
| GAAAGAGAAGAGAAAGAAGC+AGG | + | chr1_1:23028470-23028489 | None:intergenic | 40.0% | |
| AACGGAGAAGGTTGAAGAAA+AGG | + | chr1_1:23028503-23028522 | None:intergenic | 40.0% | |
| CAACCTTCTCCGTTTATTCT+TGG | - | chr1_1:23028509-23028528 | Msa0014530:intron | 40.0% | |
| !! | TGATGATGGTGATGCTGTTT+CGG | - | chr1_1:23028547-23028566 | Msa0014530:intron | 40.0% |
| AGGTTAGGGAATTATCTTCC+TGG | - | chr1_1:23028794-23028813 | Msa0014530:CDS | 40.0% | |
| TCCTGGTCATCTGAATTTGT+TGG | - | chr1_1:23028811-23028830 | Msa0014530:CDS | 40.0% | |
| !! | TGATGGTTGTTGTTTCCTTG+TGG | + | chr1_1:23028102-23028121 | None:intergenic | 40.0% |
| TTCTACTAGATCGGTTGTTG+TGG | + | chr1_1:23028125-23028144 | None:intergenic | 40.0% | |
| ! | AGAAGTGGGTTCTACTAGAT+CGG | + | chr1_1:23028134-23028153 | None:intergenic | 40.0% |
| ! | TTACTGTGACGGTCTTTTGA+CGG | + | chr1_1:23028184-23028203 | None:intergenic | 40.0% |
| TTCCGTCTACTTTACTGTGA+CGG | + | chr1_1:23028195-23028214 | None:intergenic | 40.0% | |
| TGTTAACTGGAAAACACGTG+CGG | + | chr1_1:23028251-23028270 | None:intergenic | 40.0% | |
| GAAAGAGAAGAGAAAGAAGC+AGG | + | chr1_1:23028470-23028489 | None:intergenic | 40.0% | |
| AACGGAGAAGGTTGAAGAAA+AGG | + | chr1_1:23028503-23028522 | None:intergenic | 40.0% | |
| CAACCTTCTCCGTTTATTCT+TGG | - | chr1_1:23028509-23028528 | Msa0014530:intron | 40.0% | |
| !! | TGATGATGGTGATGCTGTTT+CGG | - | chr1_1:23028547-23028566 | Msa0014530:intron | 40.0% |
| AGGTTAGGGAATTATCTTCC+TGG | - | chr1_1:23028794-23028813 | Msa0014530:CDS | 40.0% | |
| TCCTGGTCATCTGAATTTGT+TGG | - | chr1_1:23028811-23028830 | Msa0014530:CDS | 40.0% | |
| TAGATCGGTTGTTGTGGTGA+TGG | + | chr1_1:23028119-23028138 | None:intergenic | 45.0% | |
| GACCGTCACAGTAAAGTAGA+CGG | - | chr1_1:23028190-23028209 | Msa0014530:CDS | 45.0% | |
| CACAGTAAAGTAGACGGAAG+AGG | - | chr1_1:23028196-23028215 | Msa0014530:CDS | 45.0% | |
| TTCCAGTTAACACGTGAGCT+TGG | - | chr1_1:23028259-23028278 | Msa0014530:CDS | 45.0% | |
| GAGCTTGGTCATAAATCCGA+CGG | - | chr1_1:23028274-23028293 | Msa0014530:CDS | 45.0% | |
| CCATTCGATAGTTTGACCGT+CGG | + | chr1_1:23028293-23028312 | None:intergenic | 45.0% | |
| CTCCAAAGCTGAGCAAAATC+CGG | + | chr1_1:23028608-23028627 | None:intergenic | 45.0% | |
| GAAACAGAAAAACCTTCCGG+CGG | + | chr1_1:23028653-23028672 | None:intergenic | 45.0% | |
| TCAACAGCAACAAGGCTCTA+TGG | - | chr1_1:23028754-23028773 | Msa0014530:CDS | 45.0% | |
| CAACAGCAACAAGGCTCTAT+GGG | - | chr1_1:23028755-23028774 | Msa0014530:CDS | 45.0% | |
| GCCAACAAATTCAGATGACC+AGG | + | chr1_1:23028815-23028834 | None:intergenic | 45.0% | |
| !! | TTGTTGGCTTCTTTGTCTGG+TGG | - | chr1_1:23028827-23028846 | Msa0014530:CDS | 45.0% |
| !! | TGTTGGCTTCTTTGTCTGGT+GGG | - | chr1_1:23028828-23028847 | Msa0014530:CDS | 45.0% |
| TCTGGTGGGAATGGAAATTC+TGG | - | chr1_1:23028842-23028861 | Msa0014530:CDS | 45.0% | |
| TAGATCGGTTGTTGTGGTGA+TGG | + | chr1_1:23028119-23028138 | None:intergenic | 45.0% | |
| GACCGTCACAGTAAAGTAGA+CGG | - | chr1_1:23028190-23028209 | Msa0014530:CDS | 45.0% | |
| CACAGTAAAGTAGACGGAAG+AGG | - | chr1_1:23028196-23028215 | Msa0014530:CDS | 45.0% | |
| TTCCAGTTAACACGTGAGCT+TGG | - | chr1_1:23028259-23028278 | Msa0014530:CDS | 45.0% | |
| GAGCTTGGTCATAAATCCGA+CGG | - | chr1_1:23028274-23028293 | Msa0014530:CDS | 45.0% | |
| CCATTCGATAGTTTGACCGT+CGG | + | chr1_1:23028293-23028312 | None:intergenic | 45.0% | |
| CTCCAAAGCTGAGCAAAATC+CGG | + | chr1_1:23028608-23028627 | None:intergenic | 45.0% | |
| GAAACAGAAAAACCTTCCGG+CGG | + | chr1_1:23028653-23028672 | None:intergenic | 45.0% | |
| TCAACAGCAACAAGGCTCTA+TGG | - | chr1_1:23028754-23028773 | Msa0014530:CDS | 45.0% | |
| CAACAGCAACAAGGCTCTAT+GGG | - | chr1_1:23028755-23028774 | Msa0014530:CDS | 45.0% | |
| GCCAACAAATTCAGATGACC+AGG | + | chr1_1:23028815-23028834 | None:intergenic | 45.0% | |
| !! | TTGTTGGCTTCTTTGTCTGG+TGG | - | chr1_1:23028827-23028846 | Msa0014530:CDS | 45.0% |
| !! | TGTTGGCTTCTTTGTCTGGT+GGG | - | chr1_1:23028828-23028847 | Msa0014530:CDS | 45.0% |
| TCTGGTGGGAATGGAAATTC+TGG | - | chr1_1:23028842-23028861 | Msa0014530:CDS | 45.0% | |
| GACCAAGCTCACGTGTTAAC+TGG | + | chr1_1:23028264-23028283 | None:intergenic | 50.0% | |
| CCGACGGTCAAACTATCGAA+TGG | - | chr1_1:23028290-23028309 | Msa0014530:CDS | 50.0% | |
| TGATCGACGGTTCAGCTTGA+CGG | + | chr1_1:23028321-23028340 | None:intergenic | 50.0% | |
| ! | CTTGTTGCTGTTGATGCTGC+TGG | + | chr1_1:23028748-23028767 | None:intergenic | 50.0% |
| CAGCAGCATCAACAGCAACA+AGG | - | chr1_1:23028746-23028765 | Msa0014530:CDS | 50.0% | |
| AGGCTCTATGGGTGAAGCTT+CGG | - | chr1_1:23028766-23028785 | Msa0014530:CDS | 50.0% | |
| GCTTCTTTGTCTGGTGGGAA+TGG | - | chr1_1:23028833-23028852 | Msa0014530:CDS | 50.0% | |
| GGGAATGGAAATTCTGGTCG+TGG | - | chr1_1:23028848-23028867 | Msa0014530:CDS | 50.0% | |
| GACCAAGCTCACGTGTTAAC+TGG | + | chr1_1:23028264-23028283 | None:intergenic | 50.0% | |
| CCGACGGTCAAACTATCGAA+TGG | - | chr1_1:23028290-23028309 | Msa0014530:CDS | 50.0% | |
| TGATCGACGGTTCAGCTTGA+CGG | + | chr1_1:23028321-23028340 | None:intergenic | 50.0% | |
| ! | CTTGTTGCTGTTGATGCTGC+TGG | + | chr1_1:23028748-23028767 | None:intergenic | 50.0% |
| CAGCAGCATCAACAGCAACA+AGG | - | chr1_1:23028746-23028765 | Msa0014530:CDS | 50.0% | |
| AGGCTCTATGGGTGAAGCTT+CGG | - | chr1_1:23028766-23028785 | Msa0014530:CDS | 50.0% | |
| GCTTCTTTGTCTGGTGGGAA+TGG | - | chr1_1:23028833-23028852 | Msa0014530:CDS | 50.0% | |
| GGGAATGGAAATTCTGGTCG+TGG | - | chr1_1:23028848-23028867 | Msa0014530:CDS | 50.0% | |
| ! | CTGTGACGGTCTTTTGACGG+CGG | + | chr1_1:23028181-23028200 | None:intergenic | 55.0% |
| ACACGTGCGGCGCAGATTAT+GGG | + | chr1_1:23028238-23028257 | None:intergenic | 55.0% | |
| AACACGTGCGGCGCAGATTA+TGG | + | chr1_1:23028239-23028258 | None:intergenic | 55.0% | |
| ! | GGCCGGATTTTGCTCAGCTT+TGG | - | chr1_1:23028603-23028622 | Msa0014530:intron | 55.0% |
| ACAGAAAAACCTTCCGGCGG+CGG | + | chr1_1:23028650-23028669 | None:intergenic | 55.0% | |
| ! | GTTGCTGTTGATGCTGCTGG+TGG | + | chr1_1:23028745-23028764 | None:intergenic | 55.0% |
| CTCTATGGGTGAAGCTTCGG+CGG | - | chr1_1:23028769-23028788 | Msa0014530:CDS | 55.0% | |
| TTCTGGTCGTGGAGACGATG+AGG | - | chr1_1:23028859-23028878 | Msa0014530:CDS | 55.0% | |
| ! | CTGTGACGGTCTTTTGACGG+CGG | + | chr1_1:23028181-23028200 | None:intergenic | 55.0% |
| ACACGTGCGGCGCAGATTAT+GGG | + | chr1_1:23028238-23028257 | None:intergenic | 55.0% | |
| AACACGTGCGGCGCAGATTA+TGG | + | chr1_1:23028239-23028258 | None:intergenic | 55.0% | |
| ! | GGCCGGATTTTGCTCAGCTT+TGG | - | chr1_1:23028603-23028622 | Msa0014530:intron | 55.0% |
| ACAGAAAAACCTTCCGGCGG+CGG | + | chr1_1:23028650-23028669 | None:intergenic | 55.0% | |
| ! | GTTGCTGTTGATGCTGCTGG+TGG | + | chr1_1:23028745-23028764 | None:intergenic | 55.0% |
| CTCTATGGGTGAAGCTTCGG+CGG | - | chr1_1:23028769-23028788 | Msa0014530:CDS | 55.0% | |
| TTCTGGTCGTGGAGACGATG+AGG | - | chr1_1:23028859-23028878 | Msa0014530:CDS | 55.0% | |
| ! | GTTGATGCTGCTGGTGGTGC+TGG | + | chr1_1:23028739-23028758 | None:intergenic | 60.0% |
| AAGCTTCGGCGGCGAGGTTA+GGG | - | chr1_1:23028780-23028799 | Msa0014530:CDS | 60.0% | |
| ! | GTTGATGCTGCTGGTGGTGC+TGG | + | chr1_1:23028739-23028758 | None:intergenic | 60.0% |
| AAGCTTCGGCGGCGAGGTTA+GGG | - | chr1_1:23028780-23028799 | Msa0014530:CDS | 60.0% | |
| TGCTGCACCTACTGCTCCGC+CGG | - | chr1_1:23028571-23028590 | Msa0014530:intron | 65.0% | |
| AAATCCGGCCGCCACAACCC+CGG | + | chr1_1:23028593-23028612 | None:intergenic | 65.0% | |
| GAAGCTTCGGCGGCGAGGTT+AGG | - | chr1_1:23028779-23028798 | Msa0014530:CDS | 65.0% | |
| TGCTGCACCTACTGCTCCGC+CGG | - | chr1_1:23028571-23028590 | Msa0014530:intron | 65.0% | |
| AAATCCGGCCGCCACAACCC+CGG | + | chr1_1:23028593-23028612 | None:intergenic | 65.0% | |
| GAAGCTTCGGCGGCGAGGTT+AGG | - | chr1_1:23028779-23028798 | Msa0014530:CDS | 65.0% | |
| ! | CCGGTGGCGGCGATGATCGA+CGG | + | chr1_1:23028334-23028353 | None:intergenic | 70.0% |
| CCGTCGATCATCGCCGCCAC+CGG | - | chr1_1:23028331-23028350 | Msa0014530:CDS | 70.0% | |
| GCTGCACCTACTGCTCCGCC+GGG | - | chr1_1:23028572-23028591 | Msa0014530:intron | 70.0% | |
| CTGCACCTACTGCTCCGCCG+GGG | - | chr1_1:23028573-23028592 | Msa0014530:intron | 70.0% | |
| CACAACCCCGGCGGAGCAGT+AGG | + | chr1_1:23028581-23028600 | None:intergenic | 70.0% | |
| CTACTGCTCCGCCGGGGTTG+TGG | - | chr1_1:23028579-23028598 | Msa0014530:intron | 70.0% | |
| TGCTGCTGCTCAACCGCCGC+CGG | - | chr1_1:23028634-23028653 | Msa0014530:intron | 70.0% | |
| !! | GCTGCTGGTGGTGCTGGTGC+TGG | + | chr1_1:23028733-23028752 | None:intergenic | 70.0% |
| TGGGTGAAGCTTCGGCGGCG+AGG | - | chr1_1:23028774-23028793 | Msa0014530:CDS | 70.0% | |
| ! | CCGGTGGCGGCGATGATCGA+CGG | + | chr1_1:23028334-23028353 | None:intergenic | 70.0% |
| CCGTCGATCATCGCCGCCAC+CGG | - | chr1_1:23028331-23028350 | Msa0014530:CDS | 70.0% | |
| GCTGCACCTACTGCTCCGCC+GGG | - | chr1_1:23028572-23028591 | Msa0014530:intron | 70.0% | |
| CTGCACCTACTGCTCCGCCG+GGG | - | chr1_1:23028573-23028592 | Msa0014530:intron | 70.0% | |
| CACAACCCCGGCGGAGCAGT+AGG | + | chr1_1:23028581-23028600 | None:intergenic | 70.0% | |
| CTACTGCTCCGCCGGGGTTG+TGG | - | chr1_1:23028579-23028598 | Msa0014530:intron | 70.0% | |
| TGCTGCTGCTCAACCGCCGC+CGG | - | chr1_1:23028634-23028653 | Msa0014530:intron | 70.0% | |
| !! | GCTGCTGGTGGTGCTGGTGC+TGG | + | chr1_1:23028733-23028752 | None:intergenic | 70.0% |
| TGGGTGAAGCTTCGGCGGCG+AGG | - | chr1_1:23028774-23028793 | Msa0014530:CDS | 70.0% | |
| CTGCTCCGCCGGGGTTGTGG+CGG | - | chr1_1:23028582-23028601 | Msa0014530:intron | 75.0% | |
| GCTGCTCAACCGCCGCCGGA+AGG | - | chr1_1:23028638-23028657 | Msa0014530:CDS | 75.0% | |
| CTGCTCCGCCGGGGTTGTGG+CGG | - | chr1_1:23028582-23028601 | Msa0014530:intron | 75.0% | |
| GCTGCTCAACCGCCGCCGGA+AGG | - | chr1_1:23028638-23028657 | Msa0014530:CDS | 75.0% | |
| ! | TCCGCCGGGGTTGTGGCGGC+CGG | - | chr1_1:23028586-23028605 | Msa0014530:intron | 80.0% |
| ! | TCCGGCCGCCACAACCCCGG+CGG | + | chr1_1:23028590-23028609 | None:intergenic | 80.0% |
| ! | TCCGCCGGGGTTGTGGCGGC+CGG | - | chr1_1:23028586-23028605 | Msa0014530:intron | 80.0% |
| ! | TCCGGCCGCCACAACCCCGG+CGG | + | chr1_1:23028590-23028609 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 23028091 | 23028889 | 23028091 | ID=Msa0014530;Name=Msa0014530 |
| chr1_1 | mRNA | 23028091 | 23028889 | 23028091 | ID=Msa0014530-mRNA-1;Parent=Msa0014530;Name=Msa0014530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|216 |
| chr1_1 | exon | 23028635 | 23028889 | 23028635 | ID=Msa0014530-mRNA-1:exon:8065;Parent=Msa0014530-mRNA-1 |
| chr1_1 | exon | 23028091 | 23028486 | 23028091 | ID=Msa0014530-mRNA-1:exon:8064;Parent=Msa0014530-mRNA-1 |
| chr1_1 | CDS | 23028635 | 23028889 | 23028635 | ID=Msa0014530-mRNA-1:cds;Parent=Msa0014530-mRNA-1 |
| chr1_1 | CDS | 23028091 | 23028486 | 23028091 | ID=Msa0014530-mRNA-1:cds;Parent=Msa0014530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
