AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154400 MtrunA17_Chr1g0164881 98.413 126 2 0 1 126 1 126 1.10e-87 255
Msa0154400 MtrunA17_Chr1g0211941 73.554 121 13 2 16 118 18 137 1.36e-55 174
Msa0154400 MtrunA17_Chr5g0416581 64.000 100 32 1 5 100 36 135 1.94e-37 131
Msa0154400 MtrunA17_Chr2g0277361 75.000 84 18 1 20 100 115 198 2.64e-37 132
Msa0154400 MtrunA17_Chr4g0060601 70.930 86 21 1 19 100 80 165 8.35e-37 130
Msa0154400 MtrunA17_Chr7g0224581 54.400 125 53 1 1 121 15 139 8.41e-37 127
Msa0154400 MtrunA17_Chr1g0180911 78.082 73 13 1 25 94 39 111 1.05e-35 122
Msa0154400 MtrunA17_Chr1g0204001 65.934 91 30 1 5 94 36 126 1.47e-33 120
Msa0154400 MtrunA17_Chr8g0350941 77.612 67 15 0 28 94 76 142 2.53e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154400 AT5G23280.1 69.291 127 22 3 10 121 19 143 6.76e-52 165
Msa0154400 AT5G08330.1 79.808 104 15 2 16 117 13 112 1.53e-48 156
Msa0154400 AT1G69690.1 68.889 90 23 1 16 100 31 120 7.74e-38 131
Msa0154400 AT1G72010.1 81.944 72 13 0 29 100 60 131 1.13e-37 132
Msa0154400 AT3G47620.1 67.708 96 25 2 11 100 90 185 1.28e-37 134
Msa0154400 AT1G58100.1 84.058 69 11 0 32 100 60 128 1.39e-36 129
Msa0154400 AT1G35560.1 83.333 72 12 0 29 100 52 123 2.33e-35 125
Msa0154400 AT3G27010.2 63.000 100 28 2 3 93 40 139 1.38e-34 122
Msa0154400 AT3G27010.1 63.000 100 28 2 3 93 40 139 1.38e-34 122
Msa0154400 AT5G51910.1 80.597 67 13 0 28 94 53 119 1.09e-32 117
Msa0154400 AT5G51910.2 80.597 67 13 0 28 94 53 119 1.09e-32 117
Msa0154400 AT2G45680.1 69.231 78 24 0 17 94 60 137 1.92e-32 118
Msa0154400 AT5G41030.1 68.182 66 21 0 28 93 64 129 8.67e-29 106
Msa0154400 AT2G37000.1 75.000 60 15 0 32 91 43 102 6.87e-28 102
Msa0154400 AT3G45150.1 42.342 111 53 3 22 132 8 107 6.56e-22 86.3
Msa0154400 AT1G58100.2 55.072 69 7 1 32 100 60 104 2.28e-15 72.0

Find 75 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGGCCTTTCAATATTTA+AGG 0.081940 1_4:-18909799 Msa0154400:three_prime_UTR
TACATCTATCTTACTGTTAT+TGG 0.125884 1_4:-18910110 Msa0154400:three_prime_UTR
AACACGTGCGGCGCAGATTA+TGG 0.191163 1_4:+18911570 None:intergenic
AGTGGCCATGGTAGAAAATT+TGG 0.252577 1_4:-18910400 Msa0154400:exon
CAACCTTCTCCGTTTATTCT+TGG 0.258658 1_4:-18911397 Msa0154400:CDS
AATGCCTACTAGCATGAAAA+TGG 0.301605 1_4:+18910081 None:intergenic
ACCAGTAGTCCATGTCTTAT+AGG 0.321518 1_4:+18910291 None:intergenic
GACCAAGCTCACGTGTTAAC+TGG 0.329708 1_4:+18911545 None:intergenic
TGAGCATTATTGAAGGGATT+GGG 0.331382 1_4:-18910433 Msa0154400:CDS
TATGAAGCACGGAAACTCTT+TGG 0.345164 1_4:-18910026 Msa0154400:three_prime_UTR
CTATGTAAGTTGATTGTTGT+GGG 0.377616 1_4:-18910172 Msa0154400:three_prime_UTR
GCACGGAAACTCTTTGGATT+AGG 0.380214 1_4:-18910020 Msa0154400:three_prime_UTR
ACACGTGCGGCGCAGATTAT+GGG 0.390746 1_4:+18911571 None:intergenic
TCCCTTCAATAATGCTCAAT+TGG 0.392966 1_4:+18910438 None:intergenic
TCTACCATGGCCACTTCAAA+TGG 0.393534 1_4:+18910408 None:intergenic
TTGAGCATTATTGAAGGGAT+TGG 0.402423 1_4:-18910434 Msa0154400:CDS
TCTTTGGATTAGGCATGTTC+CGG 0.413136 1_4:-18910010 Msa0154400:three_prime_UTR
GAAAGAAGCAGGTGTAGTTC+CGG 0.413992 1_4:+18911450 None:intergenic
TCAATATTTAAGGGAAGATA+AGG 0.415680 1_4:-18909789 Msa0154400:three_prime_UTR
TGATGATGGTGATGCTGTTT+CGG 0.418538 1_4:-18911359 Msa0154400:intron
AACGGAGAAGGTTGAAGAAA+AGG 0.424552 1_4:+18911406 None:intergenic
ATTTCATATTCTAGATTGAA+TGG 0.426589 1_4:-18910061 Msa0154400:three_prime_UTR
TCATACTGTAGTGTAGTCAT+AGG 0.432692 1_4:-18909864 Msa0154400:three_prime_UTR
TCTATGTAAGTTGATTGTTG+TGG 0.433899 1_4:-18910173 Msa0154400:three_prime_UTR
TAGGGCCTTTCAATATTTAA+GGG 0.434287 1_4:-18909798 Msa0154400:three_prime_UTR
TTTCAAATTATTAATGGTGT+TGG 0.440278 1_4:-18909957 Msa0154400:three_prime_UTR
AGATGTAGTAAAGAAACAAA+TGG 0.448933 1_4:+18910126 None:intergenic
AAACGTTTACCAAGAATAAA+CGG 0.469719 1_4:+18911388 None:intergenic
TCTGCTTGGAAGTTTGTACT+AGG 0.470019 1_4:-18909817 Msa0154400:three_prime_UTR
GATGTAGTAAAGAAACAAAT+GGG 0.472475 1_4:+18910127 None:intergenic
ATCATCGCCGCCACCGGTAC+CGG 0.476622 1_4:-18911469 Msa0154400:CDS
TGTAGTTCCGGTACCGGTGG+CGG 0.480445 1_4:+18911462 None:intergenic
CACTACCATGGTACTCTGCT+TGG 0.480643 1_4:-18909831 Msa0154400:three_prime_UTR
ATTTAAGGGAAGATAAGGTT+AGG 0.485356 1_4:-18909784 Msa0154400:three_prime_UTR
ACACTGATGAATCTAACAAA+TGG 0.486578 1_4:+18910218 None:intergenic
GTGAAATGAAGAACAAAGTA+AGG 0.489596 1_4:+18910356 None:intergenic
CTCCAATTGAGCATTATTGA+AGG 0.490132 1_4:-18910440 Msa0154400:CDS
ACCTATAAGACATGGACTAC+TGG 0.493680 1_4:-18910292 Msa0154400:three_prime_UTR
AGCAGGTGTAGTTCCGGTAC+CGG 0.496500 1_4:+18911456 None:intergenic
AGAAGTGGGTTCTACTAGAT+CGG 0.502592 1_4:+18911675 None:intergenic
ATCTTCCCTTAAATATTGAA+AGG 0.504826 1_4:+18909793 None:intergenic
GAAAGAGAAGAGAAAGAAGC+AGG 0.509335 1_4:+18911439 None:intergenic
TGATCGACGGTTCAGCTTGA+CGG 0.511819 1_4:+18911488 None:intergenic
TTCCAGTTAACACGTGAGCT+TGG 0.518020 1_4:-18911547 Msa0154400:CDS
TATTAATGGTGTTGGTGTGT+TGG 0.521332 1_4:-18909949 Msa0154400:three_prime_UTR
CTGCTTGGAAGTTTGTACTA+GGG 0.521399 1_4:-18909816 Msa0154400:three_prime_UTR
TTCCGTCTACTTTACTGTGA+CGG 0.524053 1_4:+18911614 None:intergenic
CTTCAATAATGCTCAATTGG+AGG 0.526946 1_4:+18910441 None:intergenic
TTCAGTATAGTTATATGTAC+CGG 0.527937 1_4:+18909991 None:intergenic
CCGTCGATCATCGCCGCCAC+CGG 0.537613 1_4:-18911475 Msa0154400:CDS
CACAGTAAAGTAGACGGAAG+AGG 0.537838 1_4:-18911610 Msa0154400:CDS
GAGCATTATTGAAGGGATTG+GGG 0.542957 1_4:-18910432 Msa0154400:CDS
GGGTCCATTTGAAGTGGCCA+TGG 0.546740 1_4:-18910412 Msa0154400:CDS
TCCAATTGAGCATTATTGAA+GGG 0.546836 1_4:-18910439 Msa0154400:CDS
TTCTACTAGATCGGTTGTTG+TGG 0.553500 1_4:+18911684 None:intergenic
CCGGTGGCGGCGATGATCGA+CGG 0.572268 1_4:+18911475 None:intergenic
TGATAGTTGTTGTTTCCTTG+TGG 0.582444 1_4:+18911707 None:intergenic
TCTTAGTTATTGTTTGAGAG+AGG 0.585305 1_4:-18910321 Msa0154400:three_prime_UTR
GGATTGGGGTCCATTTGAAG+TGG 0.597276 1_4:-18910418 Msa0154400:CDS
TATGTAAGTTGATTGTTGTG+GGG 0.597927 1_4:-18910171 Msa0154400:three_prime_UTR
AGAAAATTTGGCATAGCTGT+TGG 0.603502 1_4:-18910388 Msa0154400:three_prime_UTR
TTACCAAGAATAAACGGAGA+AGG 0.605589 1_4:+18911394 None:intergenic
AGGTGTAGTTCCGGTACCGG+TGG 0.608264 1_4:+18911459 None:intergenic
CCATTCGATAGTTTGACCGT+CGG 0.631339 1_4:+18911516 None:intergenic
GACCGTCACAGTAAAGTAGA+CGG 0.641647 1_4:-18911616 Msa0154400:CDS
CCGACGGTCAAACTATCGAA+TGG 0.646959 1_4:-18911516 Msa0154400:CDS
GGTAATCTCACTCACTACCA+TGG 0.650080 1_4:-18909843 Msa0154400:three_prime_UTR
TATTCAACAGCTATGAAGCA+CGG 0.654390 1_4:-18910037 Msa0154400:three_prime_UTR
ACCCCAAATGTCTAACCACA+AGG 0.654789 1_4:-18911722 None:intergenic
AAACGTTTACGTGATGATGA+TGG 0.660458 1_4:-18911373 Msa0154400:CDS
ATTTGTTAGATTCATCAGTG+TGG 0.664679 1_4:-18910216 Msa0154400:three_prime_UTR
GGATTAGTACCTATAAGACA+TGG 0.667898 1_4:-18910300 Msa0154400:three_prime_UTR
GAGCTTGGTCATAAATCCGA+CGG 0.680249 1_4:-18911532 Msa0154400:CDS
AACTTCCAAGCAGAGTACCA+TGG 0.708625 1_4:+18909826 None:intergenic
TGTTAACTGGAAAACACGTG+CGG 0.728936 1_4:+18911558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTTTAGTTAAATTTT+AGG - chr1_4:18910579-18910598 Msa0154400:intron 10.0%
!!! AGATTTTTAGTTAAATTTTA+GGG - chr1_4:18910580-18910599 Msa0154400:intron 10.0%
!!! TGATTTTTTCAAATTATTAA+TGG - chr1_4:18911514-18911533 Msa0154400:CDS 10.0%
!!! AAGATTTTTAGTTAAATTTT+AGG - chr1_4:18910579-18910598 Msa0154400:intron 10.0%
!!! AGATTTTTAGTTAAATTTTA+GGG - chr1_4:18910580-18910599 Msa0154400:intron 10.0%
!!! TGATTTTTTCAAATTATTAA+TGG - chr1_4:18911514-18911533 Msa0154400:CDS 10.0%
!!! TTTAGTTAAATTTTAGGGTT+AGG - chr1_4:18910585-18910604 Msa0154400:intron 20.0%
!! ATTATTTGTTTAGTGATTGA+AGG - chr1_4:18910714-18910733 Msa0154400:intron 20.0%
!! ACTAATTATTCATCATTCAT+AGG + chr1_4:18910748-18910767 None:intergenic 20.0%
!! TAATCAAACTCCAATAAAAT+TGG + chr1_4:18910992-18911011 None:intergenic 20.0%
!! ATAAACAAAAATCTCAAAAC+AGG + chr1_4:18911226-18911245 None:intergenic 20.0%
!! ATTTCATATTCTAGATTGAA+TGG - chr1_4:18911416-18911435 Msa0154400:CDS 20.0%
!! TTTCAAATTATTAATGGTGT+TGG - chr1_4:18911520-18911539 Msa0154400:CDS 20.0%
!!! TTTAGTTAAATTTTAGGGTT+AGG - chr1_4:18910585-18910604 Msa0154400:intron 20.0%
!! ATTATTTGTTTAGTGATTGA+AGG - chr1_4:18910714-18910733 Msa0154400:intron 20.0%
!! ACTAATTATTCATCATTCAT+AGG + chr1_4:18910748-18910767 None:intergenic 20.0%
!! TAATCAAACTCCAATAAAAT+TGG + chr1_4:18910992-18911011 None:intergenic 20.0%
!! ATAAACAAAAATCTCAAAAC+AGG + chr1_4:18911226-18911245 None:intergenic 20.0%
!! ATTTCATATTCTAGATTGAA+TGG - chr1_4:18911416-18911435 Msa0154400:CDS 20.0%
!! TTTCAAATTATTAATGGTGT+TGG - chr1_4:18911520-18911539 Msa0154400:CDS 20.0%
! AAACGTTTACCAAGAATAAA+CGG + chr1_4:18910092-18910111 None:intergenic 25.0%
!!! GTTTTAATTTTTGTTGTGTG+TGG - chr1_4:18910548-18910567 Msa0154400:intron 25.0%
! GGTTAGGTTATTGTTTATTA+TGG - chr1_4:18910601-18910620 Msa0154400:intron 25.0%
!! AATTACTGCTCCAATTTTAT+TGG - chr1_4:18910979-18910998 Msa0154400:intron 25.0%
! GATGTAGTAAAGAAACAAAT+GGG + chr1_4:18911353-18911372 None:intergenic 25.0%
! AGATGTAGTAAAGAAACAAA+TGG + chr1_4:18911354-18911373 None:intergenic 25.0%
! TACATCTATCTTACTGTTAT+TGG - chr1_4:18911367-18911386 Msa0154400:CDS 25.0%
! TTCAGTATAGTTATATGTAC+CGG + chr1_4:18911489-18911508 None:intergenic 25.0%
! ATCTTCCCTTAAATATTGAA+AGG + chr1_4:18911687-18911706 None:intergenic 25.0%
! TCAATATTTAAGGGAAGATA+AGG - chr1_4:18911688-18911707 Msa0154400:CDS 25.0%
! AAACGTTTACCAAGAATAAA+CGG + chr1_4:18910092-18910111 None:intergenic 25.0%
!!! GTTTTAATTTTTGTTGTGTG+TGG - chr1_4:18910548-18910567 Msa0154400:intron 25.0%
! GGTTAGGTTATTGTTTATTA+TGG - chr1_4:18910601-18910620 Msa0154400:intron 25.0%
!! AATTACTGCTCCAATTTTAT+TGG - chr1_4:18910979-18910998 Msa0154400:intron 25.0%
! GATGTAGTAAAGAAACAAAT+GGG + chr1_4:18911353-18911372 None:intergenic 25.0%
! AGATGTAGTAAAGAAACAAA+TGG + chr1_4:18911354-18911373 None:intergenic 25.0%
! TACATCTATCTTACTGTTAT+TGG - chr1_4:18911367-18911386 Msa0154400:CDS 25.0%
! TTCAGTATAGTTATATGTAC+CGG + chr1_4:18911489-18911508 None:intergenic 25.0%
! ATCTTCCCTTAAATATTGAA+AGG + chr1_4:18911687-18911706 None:intergenic 25.0%
! TCAATATTTAAGGGAAGATA+AGG - chr1_4:18911688-18911707 Msa0154400:CDS 25.0%
TAATTGAACTCCTCAATTCA+AGG + chr1_4:18910641-18910660 None:intergenic 30.0%
ATTTGTTTAGTGATTGAAGG+AGG - chr1_4:18910717-18910736 Msa0154400:intron 30.0%
TTTGTTTAGTGATTGAAGGA+GGG - chr1_4:18910718-18910737 Msa0154400:intron 30.0%
ATTAGTGATTGAAGCTTGAT+TGG - chr1_4:18910762-18910781 Msa0154400:intron 30.0%
ATGCTTATGTTTCTTTCTCA+TGG - chr1_4:18910851-18910870 Msa0154400:intron 30.0%
TTATGTTTCTTTCTCATGGT+GGG - chr1_4:18910855-18910874 Msa0154400:intron 30.0%
TTGATTGAGAGTGAAAGTTT+GGG - chr1_4:18910905-18910924 Msa0154400:intron 30.0%
AGTTTGGGTATTCATATCAT+AGG - chr1_4:18910920-18910939 Msa0154400:intron 30.0%
TCCAATTGAGCATTATTGAA+GGG - chr1_4:18911038-18911057 Msa0154400:intron 30.0%
GTGAAATGAAGAACAAAGTA+AGG + chr1_4:18911124-18911143 None:intergenic 30.0%
! GTTCTTCATTTCACTCTTTT+TGG - chr1_4:18911130-18911149 Msa0154400:intron 30.0%
TCTTAGTTATTGTTTGAGAG+AGG - chr1_4:18911156-18911175 Msa0154400:intron 30.0%
ACACTGATGAATCTAACAAA+TGG + chr1_4:18911262-18911281 None:intergenic 30.0%
! ATTTGTTAGATTCATCAGTG+TGG - chr1_4:18911261-18911280 Msa0154400:intron 30.0%
!! TCTATGTAAGTTGATTGTTG+TGG - chr1_4:18911304-18911323 Msa0154400:intron 30.0%
!! CTATGTAAGTTGATTGTTGT+GGG - chr1_4:18911305-18911324 Msa0154400:intron 30.0%
!! TATGTAAGTTGATTGTTGTG+GGG - chr1_4:18911306-18911325 Msa0154400:intron 30.0%
TAGGGCCTTTCAATATTTAA+GGG - chr1_4:18911679-18911698 Msa0154400:CDS 30.0%
ATTTAAGGGAAGATAAGGTT+AGG - chr1_4:18911693-18911712 Msa0154400:CDS 30.0%
TAATTGAACTCCTCAATTCA+AGG + chr1_4:18910641-18910660 None:intergenic 30.0%
ATTTGTTTAGTGATTGAAGG+AGG - chr1_4:18910717-18910736 Msa0154400:intron 30.0%
TTTGTTTAGTGATTGAAGGA+GGG - chr1_4:18910718-18910737 Msa0154400:intron 30.0%
ATTAGTGATTGAAGCTTGAT+TGG - chr1_4:18910762-18910781 Msa0154400:intron 30.0%
ATGCTTATGTTTCTTTCTCA+TGG - chr1_4:18910851-18910870 Msa0154400:intron 30.0%
TTATGTTTCTTTCTCATGGT+GGG - chr1_4:18910855-18910874 Msa0154400:intron 30.0%
TTGATTGAGAGTGAAAGTTT+GGG - chr1_4:18910905-18910924 Msa0154400:intron 30.0%
AGTTTGGGTATTCATATCAT+AGG - chr1_4:18910920-18910939 Msa0154400:intron 30.0%
TCCAATTGAGCATTATTGAA+GGG - chr1_4:18911038-18911057 Msa0154400:intron 30.0%
GTGAAATGAAGAACAAAGTA+AGG + chr1_4:18911124-18911143 None:intergenic 30.0%
! GTTCTTCATTTCACTCTTTT+TGG - chr1_4:18911130-18911149 Msa0154400:intron 30.0%
TCTTAGTTATTGTTTGAGAG+AGG - chr1_4:18911156-18911175 Msa0154400:intron 30.0%
ACACTGATGAATCTAACAAA+TGG + chr1_4:18911262-18911281 None:intergenic 30.0%
! ATTTGTTAGATTCATCAGTG+TGG - chr1_4:18911261-18911280 Msa0154400:intron 30.0%
!! TCTATGTAAGTTGATTGTTG+TGG - chr1_4:18911304-18911323 Msa0154400:intron 30.0%
!! CTATGTAAGTTGATTGTTGT+GGG - chr1_4:18911305-18911324 Msa0154400:intron 30.0%
!! TATGTAAGTTGATTGTTGTG+GGG - chr1_4:18911306-18911325 Msa0154400:intron 30.0%
TAGGGCCTTTCAATATTTAA+GGG - chr1_4:18911679-18911698 Msa0154400:CDS 30.0%
ATTTAAGGGAAGATAAGGTT+AGG - chr1_4:18911693-18911712 Msa0154400:CDS 30.0%
!! TGATAGTTGTTGTTTCCTTG+TGG + chr1_4:18909773-18909792 None:intergenic 35.0%
!!! GTTAGAGTGTTTTGAGAAGT+GGG + chr1_4:18909819-18909838 None:intergenic 35.0%
!!! TGTTAGAGTGTTTTGAGAAG+TGG + chr1_4:18909820-18909839 None:intergenic 35.0%
TTACCAAGAATAAACGGAGA+AGG + chr1_4:18910086-18910105 None:intergenic 35.0%
! AAACGTTTACGTGATGATGA+TGG - chr1_4:18910104-18910123 Msa0154400:three_prime_UTR 35.0%
TGAGAAACAGAAAAACCTTC+CGG + chr1_4:18910227-18910246 None:intergenic 35.0%
!! AATTTGTTGGCTTCTTTGTC+TGG - chr1_4:18910398-18910417 Msa0154400:exon 35.0%
TACAAAACACCGAAATTTCC+CGG + chr1_4:18910468-18910487 None:intergenic 35.0%
ATGATGAAGTCCTTGAATTG+AGG - chr1_4:18910628-18910647 Msa0154400:intron 35.0%
TGAGGAGTTCAATTAGAGTT+AGG - chr1_4:18910646-18910665 Msa0154400:intron 35.0%
GAGGAGTTCAATTAGAGTTA+GGG - chr1_4:18910647-18910666 Msa0154400:intron 35.0%
! ATTAGAGTTAGGGTTTTCCT+AGG - chr1_4:18910657-18910676 Msa0154400:intron 35.0%
!!! CTGATTAGGGTTTTAGAAGA+TGG - chr1_4:18910688-18910707 Msa0154400:intron 35.0%
CTTATGTTTCTTTCTCATGG+TGG - chr1_4:18910854-18910873 Msa0154400:intron 35.0%
CTTGATTGAGAGTGAAAGTT+TGG - chr1_4:18910904-18910923 Msa0154400:intron 35.0%
CTTCAATAATGCTCAATTGG+AGG + chr1_4:18911039-18911058 None:intergenic 35.0%
CTCCAATTGAGCATTATTGA+AGG - chr1_4:18911037-18911056 Msa0154400:intron 35.0%
TCCCTTCAATAATGCTCAAT+TGG + chr1_4:18911042-18911061 None:intergenic 35.0%
TTGAGCATTATTGAAGGGAT+TGG - chr1_4:18911043-18911062 Msa0154400:intron 35.0%
TGAGCATTATTGAAGGGATT+GGG - chr1_4:18911044-18911063 Msa0154400:intron 35.0%
! CTATGCCAAATTTTCTACCA+TGG + chr1_4:18911085-18911104 None:intergenic 35.0%
AGAAAATTTGGCATAGCTGT+TGG - chr1_4:18911089-18911108 Msa0154400:intron 35.0%
! GGATTAGTACCTATAAGACA+TGG - chr1_4:18911177-18911196 Msa0154400:intron 35.0%
! CTTTCCATTTTCATGCTAGT+AGG - chr1_4:18911392-18911411 Msa0154400:CDS 35.0%
AATGCCTACTAGCATGAAAA+TGG + chr1_4:18911399-18911418 None:intergenic 35.0%
TATTCAACAGCTATGAAGCA+CGG - chr1_4:18911440-18911459 Msa0154400:CDS 35.0%
!! TATTAATGGTGTTGGTGTGT+TGG - chr1_4:18911528-18911547 Msa0154400:CDS 35.0%
TCATACTGTAGTGTAGTCAT+AGG - chr1_4:18911613-18911632 Msa0154400:CDS 35.0%
CTAGGGCCTTTCAATATTTA+AGG - chr1_4:18911678-18911697 Msa0154400:CDS 35.0%
!! TGATAGTTGTTGTTTCCTTG+TGG + chr1_4:18909773-18909792 None:intergenic 35.0%
!!! GTTAGAGTGTTTTGAGAAGT+GGG + chr1_4:18909819-18909838 None:intergenic 35.0%
!!! TGTTAGAGTGTTTTGAGAAG+TGG + chr1_4:18909820-18909839 None:intergenic 35.0%
TTACCAAGAATAAACGGAGA+AGG + chr1_4:18910086-18910105 None:intergenic 35.0%
! AAACGTTTACGTGATGATGA+TGG - chr1_4:18910104-18910123 Msa0154400:three_prime_UTR 35.0%
TGAGAAACAGAAAAACCTTC+CGG + chr1_4:18910227-18910246 None:intergenic 35.0%
!! AATTTGTTGGCTTCTTTGTC+TGG - chr1_4:18910398-18910417 Msa0154400:exon 35.0%
TACAAAACACCGAAATTTCC+CGG + chr1_4:18910468-18910487 None:intergenic 35.0%
ATGATGAAGTCCTTGAATTG+AGG - chr1_4:18910628-18910647 Msa0154400:intron 35.0%
TGAGGAGTTCAATTAGAGTT+AGG - chr1_4:18910646-18910665 Msa0154400:intron 35.0%
GAGGAGTTCAATTAGAGTTA+GGG - chr1_4:18910647-18910666 Msa0154400:intron 35.0%
! ATTAGAGTTAGGGTTTTCCT+AGG - chr1_4:18910657-18910676 Msa0154400:intron 35.0%
!!! CTGATTAGGGTTTTAGAAGA+TGG - chr1_4:18910688-18910707 Msa0154400:intron 35.0%
CTTATGTTTCTTTCTCATGG+TGG - chr1_4:18910854-18910873 Msa0154400:intron 35.0%
CTTGATTGAGAGTGAAAGTT+TGG - chr1_4:18910904-18910923 Msa0154400:intron 35.0%
CTTCAATAATGCTCAATTGG+AGG + chr1_4:18911039-18911058 None:intergenic 35.0%
CTCCAATTGAGCATTATTGA+AGG - chr1_4:18911037-18911056 Msa0154400:intron 35.0%
TCCCTTCAATAATGCTCAAT+TGG + chr1_4:18911042-18911061 None:intergenic 35.0%
TTGAGCATTATTGAAGGGAT+TGG - chr1_4:18911043-18911062 Msa0154400:intron 35.0%
TGAGCATTATTGAAGGGATT+GGG - chr1_4:18911044-18911063 Msa0154400:intron 35.0%
! CTATGCCAAATTTTCTACCA+TGG + chr1_4:18911085-18911104 None:intergenic 35.0%
AGAAAATTTGGCATAGCTGT+TGG - chr1_4:18911089-18911108 Msa0154400:intron 35.0%
! GGATTAGTACCTATAAGACA+TGG - chr1_4:18911177-18911196 Msa0154400:intron 35.0%
! CTTTCCATTTTCATGCTAGT+AGG - chr1_4:18911392-18911411 Msa0154400:CDS 35.0%
AATGCCTACTAGCATGAAAA+TGG + chr1_4:18911399-18911418 None:intergenic 35.0%
TATTCAACAGCTATGAAGCA+CGG - chr1_4:18911440-18911459 Msa0154400:CDS 35.0%
!! TATTAATGGTGTTGGTGTGT+TGG - chr1_4:18911528-18911547 Msa0154400:CDS 35.0%
TCATACTGTAGTGTAGTCAT+AGG - chr1_4:18911613-18911632 Msa0154400:CDS 35.0%
CTAGGGCCTTTCAATATTTA+AGG - chr1_4:18911678-18911697 Msa0154400:CDS 35.0%
TTCTACTAGATCGGTTGTTG+TGG + chr1_4:18909796-18909815 None:intergenic 40.0%
! AGAAGTGGGTTCTACTAGAT+CGG + chr1_4:18909805-18909824 None:intergenic 40.0%
! TTACTGTGACGGTCTTTTGA+CGG + chr1_4:18909855-18909874 None:intergenic 40.0%
TTCCGTCTACTTTACTGTGA+CGG + chr1_4:18909866-18909885 None:intergenic 40.0%
TGTTAACTGGAAAACACGTG+CGG + chr1_4:18909922-18909941 None:intergenic 40.0%
GAAAGAGAAGAGAAAGAAGC+AGG + chr1_4:18910041-18910060 None:intergenic 40.0%
AACGGAGAAGGTTGAAGAAA+AGG + chr1_4:18910074-18910093 None:intergenic 40.0%
CAACCTTCTCCGTTTATTCT+TGG - chr1_4:18910080-18910099 Msa0154400:three_prime_UTR 40.0%
!! TGATGATGGTGATGCTGTTT+CGG - chr1_4:18910118-18910137 Msa0154400:three_prime_UTR 40.0%
AGGTTAGGGAATTATCTTCC+TGG - chr1_4:18910368-18910387 Msa0154400:three_prime_UTR 40.0%
TCCTGGTCATCTGAATTTGT+TGG - chr1_4:18910385-18910404 Msa0154400:three_prime_UTR 40.0%
ATCGTTGAACCGGGAAATTT+CGG - chr1_4:18910456-18910475 Msa0154400:CDS 40.0%
CTAGGTGGGAAAACTGATTA+GGG - chr1_4:18910675-18910694 Msa0154400:intron 40.0%
ATGGAATGTGAAGATCGAAC+CGG - chr1_4:18910813-18910832 Msa0154400:intron 40.0%
GAGCATTATTGAAGGGATTG+GGG - chr1_4:18911045-18911064 Msa0154400:intron 40.0%
AGTGGCCATGGTAGAAAATT+TGG - chr1_4:18911077-18911096 Msa0154400:intron 40.0%
! ACCTATAAGACATGGACTAC+TGG - chr1_4:18911185-18911204 Msa0154400:intron 40.0%
ACCAGTAGTCCATGTCTTAT+AGG + chr1_4:18911189-18911208 None:intergenic 40.0%
TATGAAGCACGGAAACTCTT+TGG - chr1_4:18911451-18911470 Msa0154400:CDS 40.0%
! TCTTTGGATTAGGCATGTTC+CGG - chr1_4:18911467-18911486 Msa0154400:CDS 40.0%
TCTGCTTGGAAGTTTGTACT+AGG - chr1_4:18911660-18911679 Msa0154400:CDS 40.0%
CTGCTTGGAAGTTTGTACTA+GGG - chr1_4:18911661-18911680 Msa0154400:CDS 40.0%
TTCTACTAGATCGGTTGTTG+TGG + chr1_4:18909796-18909815 None:intergenic 40.0%
! AGAAGTGGGTTCTACTAGAT+CGG + chr1_4:18909805-18909824 None:intergenic 40.0%
! TTACTGTGACGGTCTTTTGA+CGG + chr1_4:18909855-18909874 None:intergenic 40.0%
TTCCGTCTACTTTACTGTGA+CGG + chr1_4:18909866-18909885 None:intergenic 40.0%
TGTTAACTGGAAAACACGTG+CGG + chr1_4:18909922-18909941 None:intergenic 40.0%
GAAAGAGAAGAGAAAGAAGC+AGG + chr1_4:18910041-18910060 None:intergenic 40.0%
AACGGAGAAGGTTGAAGAAA+AGG + chr1_4:18910074-18910093 None:intergenic 40.0%
CAACCTTCTCCGTTTATTCT+TGG - chr1_4:18910080-18910099 Msa0154400:three_prime_UTR 40.0%
!! TGATGATGGTGATGCTGTTT+CGG - chr1_4:18910118-18910137 Msa0154400:three_prime_UTR 40.0%
AGGTTAGGGAATTATCTTCC+TGG - chr1_4:18910368-18910387 Msa0154400:three_prime_UTR 40.0%
TCCTGGTCATCTGAATTTGT+TGG - chr1_4:18910385-18910404 Msa0154400:three_prime_UTR 40.0%
ATCGTTGAACCGGGAAATTT+CGG - chr1_4:18910456-18910475 Msa0154400:CDS 40.0%
CTAGGTGGGAAAACTGATTA+GGG - chr1_4:18910675-18910694 Msa0154400:intron 40.0%
ATGGAATGTGAAGATCGAAC+CGG - chr1_4:18910813-18910832 Msa0154400:intron 40.0%
GAGCATTATTGAAGGGATTG+GGG - chr1_4:18911045-18911064 Msa0154400:intron 40.0%
AGTGGCCATGGTAGAAAATT+TGG - chr1_4:18911077-18911096 Msa0154400:intron 40.0%
! ACCTATAAGACATGGACTAC+TGG - chr1_4:18911185-18911204 Msa0154400:intron 40.0%
ACCAGTAGTCCATGTCTTAT+AGG + chr1_4:18911189-18911208 None:intergenic 40.0%
TATGAAGCACGGAAACTCTT+TGG - chr1_4:18911451-18911470 Msa0154400:CDS 40.0%
! TCTTTGGATTAGGCATGTTC+CGG - chr1_4:18911467-18911486 Msa0154400:CDS 40.0%
TCTGCTTGGAAGTTTGTACT+AGG - chr1_4:18911660-18911679 Msa0154400:CDS 40.0%
CTGCTTGGAAGTTTGTACTA+GGG - chr1_4:18911661-18911680 Msa0154400:CDS 40.0%
GACCGTCACAGTAAAGTAGA+CGG - chr1_4:18909861-18909880 Msa0154400:three_prime_UTR 45.0%
CACAGTAAAGTAGACGGAAG+AGG - chr1_4:18909867-18909886 Msa0154400:three_prime_UTR 45.0%
TTCCAGTTAACACGTGAGCT+TGG - chr1_4:18909930-18909949 Msa0154400:three_prime_UTR 45.0%
GAGCTTGGTCATAAATCCGA+CGG - chr1_4:18909945-18909964 Msa0154400:three_prime_UTR 45.0%
CCATTCGATAGTTTGACCGT+CGG + chr1_4:18909964-18909983 None:intergenic 45.0%
GAAAGAAGCAGGTGTAGTTC+CGG + chr1_4:18910030-18910049 None:intergenic 45.0%
CTCCAAAGCTGAGCAAAATC+CGG + chr1_4:18910179-18910198 None:intergenic 45.0%
GAAACAGAAAAACCTTCCGG+CGG + chr1_4:18910224-18910243 None:intergenic 45.0%
TCAACAGCAACAAGGCTCTA+TGG - chr1_4:18910328-18910347 Msa0154400:three_prime_UTR 45.0%
CAACAGCAACAAGGCTCTAT+GGG - chr1_4:18910329-18910348 Msa0154400:three_prime_UTR 45.0%
GCCAACAAATTCAGATGACC+AGG + chr1_4:18910389-18910408 None:intergenic 45.0%
!! TTGTTGGCTTCTTTGTCTGG+TGG - chr1_4:18910401-18910420 Msa0154400:exon 45.0%
!! TGTTGGCTTCTTTGTCTGGT+GGG - chr1_4:18910402-18910421 Msa0154400:exon 45.0%
TCTGGTGGGAATGGAAATTC+TGG - chr1_4:18910416-18910435 Msa0154400:CDS 45.0%
GACGATGAAGATCGTTGAAC+CGG - chr1_4:18910446-18910465 Msa0154400:CDS 45.0%
ACGATGAAGATCGTTGAACC+GGG - chr1_4:18910447-18910466 Msa0154400:CDS 45.0%
! AGAGTTAGGGTTTTCCTAGG+TGG - chr1_4:18910660-18910679 Msa0154400:intron 45.0%
! GAGTTAGGGTTTTCCTAGGT+GGG - chr1_4:18910661-18910680 Msa0154400:intron 45.0%
! CCTAATCAGTTTTCCCACCT+AGG + chr1_4:18910677-18910696 None:intergenic 45.0%
CCTAGGTGGGAAAACTGATT+AGG - chr1_4:18910674-18910693 Msa0154400:intron 45.0%
GATTGGTATGCAAATGCGAG+CGG - chr1_4:18910779-18910798 Msa0154400:intron 45.0%
TCTACCATGGCCACTTCAAA+TGG + chr1_4:18911072-18911091 None:intergenic 45.0%
GCACGGAAACTCTTTGGATT+AGG - chr1_4:18911457-18911476 Msa0154400:CDS 45.0%
GGTAATCTCACTCACTACCA+TGG - chr1_4:18911634-18911653 Msa0154400:CDS 45.0%
! AACTTCCAAGCAGAGTACCA+TGG + chr1_4:18911654-18911673 None:intergenic 45.0%
GACCGTCACAGTAAAGTAGA+CGG - chr1_4:18909861-18909880 Msa0154400:three_prime_UTR 45.0%
CACAGTAAAGTAGACGGAAG+AGG - chr1_4:18909867-18909886 Msa0154400:three_prime_UTR 45.0%
TTCCAGTTAACACGTGAGCT+TGG - chr1_4:18909930-18909949 Msa0154400:three_prime_UTR 45.0%
GAGCTTGGTCATAAATCCGA+CGG - chr1_4:18909945-18909964 Msa0154400:three_prime_UTR 45.0%
CCATTCGATAGTTTGACCGT+CGG + chr1_4:18909964-18909983 None:intergenic 45.0%
GAAAGAAGCAGGTGTAGTTC+CGG + chr1_4:18910030-18910049 None:intergenic 45.0%
CTCCAAAGCTGAGCAAAATC+CGG + chr1_4:18910179-18910198 None:intergenic 45.0%
GAAACAGAAAAACCTTCCGG+CGG + chr1_4:18910224-18910243 None:intergenic 45.0%
TCAACAGCAACAAGGCTCTA+TGG - chr1_4:18910328-18910347 Msa0154400:three_prime_UTR 45.0%
CAACAGCAACAAGGCTCTAT+GGG - chr1_4:18910329-18910348 Msa0154400:three_prime_UTR 45.0%
GCCAACAAATTCAGATGACC+AGG + chr1_4:18910389-18910408 None:intergenic 45.0%
!! TTGTTGGCTTCTTTGTCTGG+TGG - chr1_4:18910401-18910420 Msa0154400:exon 45.0%
!! TGTTGGCTTCTTTGTCTGGT+GGG - chr1_4:18910402-18910421 Msa0154400:exon 45.0%
TCTGGTGGGAATGGAAATTC+TGG - chr1_4:18910416-18910435 Msa0154400:CDS 45.0%
GACGATGAAGATCGTTGAAC+CGG - chr1_4:18910446-18910465 Msa0154400:CDS 45.0%
ACGATGAAGATCGTTGAACC+GGG - chr1_4:18910447-18910466 Msa0154400:CDS 45.0%
! AGAGTTAGGGTTTTCCTAGG+TGG - chr1_4:18910660-18910679 Msa0154400:intron 45.0%
! GAGTTAGGGTTTTCCTAGGT+GGG - chr1_4:18910661-18910680 Msa0154400:intron 45.0%
! CCTAATCAGTTTTCCCACCT+AGG + chr1_4:18910677-18910696 None:intergenic 45.0%
CCTAGGTGGGAAAACTGATT+AGG - chr1_4:18910674-18910693 Msa0154400:intron 45.0%
GATTGGTATGCAAATGCGAG+CGG - chr1_4:18910779-18910798 Msa0154400:intron 45.0%
TCTACCATGGCCACTTCAAA+TGG + chr1_4:18911072-18911091 None:intergenic 45.0%
GCACGGAAACTCTTTGGATT+AGG - chr1_4:18911457-18911476 Msa0154400:CDS 45.0%
GGTAATCTCACTCACTACCA+TGG - chr1_4:18911634-18911653 Msa0154400:CDS 45.0%
! AACTTCCAAGCAGAGTACCA+TGG + chr1_4:18911654-18911673 None:intergenic 45.0%
GACCAAGCTCACGTGTTAAC+TGG + chr1_4:18909935-18909954 None:intergenic 50.0%
CCGACGGTCAAACTATCGAA+TGG - chr1_4:18909961-18909980 Msa0154400:three_prime_UTR 50.0%
TGATCGACGGTTCAGCTTGA+CGG + chr1_4:18909992-18910011 None:intergenic 50.0%
! CTTGTTGCTGTTGATGCTGC+TGG + chr1_4:18910322-18910341 None:intergenic 50.0%
CAGCAGCATCAACAGCAACA+AGG - chr1_4:18910320-18910339 Msa0154400:three_prime_UTR 50.0%
AGGCTCTATGGGTGAAGCTT+CGG - chr1_4:18910340-18910359 Msa0154400:three_prime_UTR 50.0%
GCTTCTTTGTCTGGTGGGAA+TGG - chr1_4:18910407-18910426 Msa0154400:exon 50.0%
GGGAATGGAAATTCTGGTCG+TGG - chr1_4:18910422-18910441 Msa0154400:CDS 50.0%
GTATGCAAATGCGAGCGGAA+TGG - chr1_4:18910784-18910803 Msa0154400:intron 50.0%
GCGAGCGGAATGGAACATAA+TGG - chr1_4:18910794-18910813 Msa0154400:intron 50.0%
GGATTGGGGTCCATTTGAAG+TGG - chr1_4:18911059-18911078 Msa0154400:intron 50.0%
CACTACCATGGTACTCTGCT+TGG - chr1_4:18911646-18911665 Msa0154400:CDS 50.0%
GACCAAGCTCACGTGTTAAC+TGG + chr1_4:18909935-18909954 None:intergenic 50.0%
CCGACGGTCAAACTATCGAA+TGG - chr1_4:18909961-18909980 Msa0154400:three_prime_UTR 50.0%
TGATCGACGGTTCAGCTTGA+CGG + chr1_4:18909992-18910011 None:intergenic 50.0%
! CTTGTTGCTGTTGATGCTGC+TGG + chr1_4:18910322-18910341 None:intergenic 50.0%
CAGCAGCATCAACAGCAACA+AGG - chr1_4:18910320-18910339 Msa0154400:three_prime_UTR 50.0%
AGGCTCTATGGGTGAAGCTT+CGG - chr1_4:18910340-18910359 Msa0154400:three_prime_UTR 50.0%
GCTTCTTTGTCTGGTGGGAA+TGG - chr1_4:18910407-18910426 Msa0154400:exon 50.0%
GGGAATGGAAATTCTGGTCG+TGG - chr1_4:18910422-18910441 Msa0154400:CDS 50.0%
GTATGCAAATGCGAGCGGAA+TGG - chr1_4:18910784-18910803 Msa0154400:intron 50.0%
GCGAGCGGAATGGAACATAA+TGG - chr1_4:18910794-18910813 Msa0154400:intron 50.0%
GGATTGGGGTCCATTTGAAG+TGG - chr1_4:18911059-18911078 Msa0154400:intron 50.0%
CACTACCATGGTACTCTGCT+TGG - chr1_4:18911646-18911665 Msa0154400:CDS 50.0%
! CTGTGACGGTCTTTTGACGG+CGG + chr1_4:18909852-18909871 None:intergenic 55.0%
ACACGTGCGGCGCAGATTAT+GGG + chr1_4:18909909-18909928 None:intergenic 55.0%
AACACGTGCGGCGCAGATTA+TGG + chr1_4:18909910-18909929 None:intergenic 55.0%
AGCAGGTGTAGTTCCGGTAC+CGG + chr1_4:18910024-18910043 None:intergenic 55.0%
! GGCCGGATTTTGCTCAGCTT+TGG - chr1_4:18910174-18910193 Msa0154400:three_prime_UTR 55.0%
ACAGAAAAACCTTCCGGCGG+CGG + chr1_4:18910221-18910240 None:intergenic 55.0%
! GTTGCTGTTGATGCTGCTGG+TGG + chr1_4:18910319-18910338 None:intergenic 55.0%
CTCTATGGGTGAAGCTTCGG+CGG - chr1_4:18910343-18910362 Msa0154400:three_prime_UTR 55.0%
GCATCCTCAACTCATCGCTC+CGG + chr1_4:18910835-18910854 None:intergenic 55.0%
! GGGTCCATTTGAAGTGGCCA+TGG - chr1_4:18911065-18911084 Msa0154400:intron 55.0%
! CTGTGACGGTCTTTTGACGG+CGG + chr1_4:18909852-18909871 None:intergenic 55.0%
ACACGTGCGGCGCAGATTAT+GGG + chr1_4:18909909-18909928 None:intergenic 55.0%
AACACGTGCGGCGCAGATTA+TGG + chr1_4:18909910-18909929 None:intergenic 55.0%
AGCAGGTGTAGTTCCGGTAC+CGG + chr1_4:18910024-18910043 None:intergenic 55.0%
! GGCCGGATTTTGCTCAGCTT+TGG - chr1_4:18910174-18910193 Msa0154400:three_prime_UTR 55.0%
ACAGAAAAACCTTCCGGCGG+CGG + chr1_4:18910221-18910240 None:intergenic 55.0%
! GTTGCTGTTGATGCTGCTGG+TGG + chr1_4:18910319-18910338 None:intergenic 55.0%
CTCTATGGGTGAAGCTTCGG+CGG - chr1_4:18910343-18910362 Msa0154400:three_prime_UTR 55.0%
GCATCCTCAACTCATCGCTC+CGG + chr1_4:18910835-18910854 None:intergenic 55.0%
! GGGTCCATTTGAAGTGGCCA+TGG - chr1_4:18911065-18911084 Msa0154400:intron 55.0%
!! TGTAGTTCCGGTACCGGTGG+CGG + chr1_4:18910018-18910037 None:intergenic 60.0%
! AGGTGTAGTTCCGGTACCGG+TGG + chr1_4:18910021-18910040 None:intergenic 60.0%
! GTTGATGCTGCTGGTGGTGC+TGG + chr1_4:18910313-18910332 None:intergenic 60.0%
AAGCTTCGGCGGCGAGGTTA+GGG - chr1_4:18910354-18910373 Msa0154400:three_prime_UTR 60.0%
CGAACCGGAGCGATGAGTTG+AGG - chr1_4:18910828-18910847 Msa0154400:intron 60.0%
!! TGTAGTTCCGGTACCGGTGG+CGG + chr1_4:18910018-18910037 None:intergenic 60.0%
! AGGTGTAGTTCCGGTACCGG+TGG + chr1_4:18910021-18910040 None:intergenic 60.0%
! GTTGATGCTGCTGGTGGTGC+TGG + chr1_4:18910313-18910332 None:intergenic 60.0%
AAGCTTCGGCGGCGAGGTTA+GGG - chr1_4:18910354-18910373 Msa0154400:three_prime_UTR 60.0%
CGAACCGGAGCGATGAGTTG+AGG - chr1_4:18910828-18910847 Msa0154400:intron 60.0%
ATCATCGCCGCCACCGGTAC+CGG - chr1_4:18910008-18910027 Msa0154400:three_prime_UTR 65.0%
TGCTGCACCTACTGCTCCGC+CGG - chr1_4:18910142-18910161 Msa0154400:three_prime_UTR 65.0%
AAATCCGGCCGCCACAACCC+CGG + chr1_4:18910164-18910183 None:intergenic 65.0%
GAAGCTTCGGCGGCGAGGTT+AGG - chr1_4:18910353-18910372 Msa0154400:three_prime_UTR 65.0%
ATCATCGCCGCCACCGGTAC+CGG - chr1_4:18910008-18910027 Msa0154400:three_prime_UTR 65.0%
TGCTGCACCTACTGCTCCGC+CGG - chr1_4:18910142-18910161 Msa0154400:three_prime_UTR 65.0%
AAATCCGGCCGCCACAACCC+CGG + chr1_4:18910164-18910183 None:intergenic 65.0%
GAAGCTTCGGCGGCGAGGTT+AGG - chr1_4:18910353-18910372 Msa0154400:three_prime_UTR 65.0%
! CCGGTGGCGGCGATGATCGA+CGG + chr1_4:18910005-18910024 None:intergenic 70.0%
CCGTCGATCATCGCCGCCAC+CGG - chr1_4:18910002-18910021 Msa0154400:three_prime_UTR 70.0%
GCTGCACCTACTGCTCCGCC+GGG - chr1_4:18910143-18910162 Msa0154400:three_prime_UTR 70.0%
CTGCACCTACTGCTCCGCCG+GGG - chr1_4:18910144-18910163 Msa0154400:three_prime_UTR 70.0%
CACAACCCCGGCGGAGCAGT+AGG + chr1_4:18910152-18910171 None:intergenic 70.0%
CTACTGCTCCGCCGGGGTTG+TGG - chr1_4:18910150-18910169 Msa0154400:three_prime_UTR 70.0%
TGCTGCTGCTCAACCGCCGC+CGG - chr1_4:18910205-18910224 Msa0154400:three_prime_UTR 70.0%
!! GCTGCTGGTGGTGCTGGTGC+TGG + chr1_4:18910307-18910326 None:intergenic 70.0%
TGGGTGAAGCTTCGGCGGCG+AGG - chr1_4:18910348-18910367 Msa0154400:three_prime_UTR 70.0%
! CCGGTGGCGGCGATGATCGA+CGG + chr1_4:18910005-18910024 None:intergenic 70.0%
CCGTCGATCATCGCCGCCAC+CGG - chr1_4:18910002-18910021 Msa0154400:three_prime_UTR 70.0%
GCTGCACCTACTGCTCCGCC+GGG - chr1_4:18910143-18910162 Msa0154400:three_prime_UTR 70.0%
CTGCACCTACTGCTCCGCCG+GGG - chr1_4:18910144-18910163 Msa0154400:three_prime_UTR 70.0%
CACAACCCCGGCGGAGCAGT+AGG + chr1_4:18910152-18910171 None:intergenic 70.0%
CTACTGCTCCGCCGGGGTTG+TGG - chr1_4:18910150-18910169 Msa0154400:three_prime_UTR 70.0%
TGCTGCTGCTCAACCGCCGC+CGG - chr1_4:18910205-18910224 Msa0154400:three_prime_UTR 70.0%
!! GCTGCTGGTGGTGCTGGTGC+TGG + chr1_4:18910307-18910326 None:intergenic 70.0%
TGGGTGAAGCTTCGGCGGCG+AGG - chr1_4:18910348-18910367 Msa0154400:three_prime_UTR 70.0%
CTGCTCCGCCGGGGTTGTGG+CGG - chr1_4:18910153-18910172 Msa0154400:three_prime_UTR 75.0%
GCTGCTCAACCGCCGCCGGA+AGG - chr1_4:18910209-18910228 Msa0154400:three_prime_UTR 75.0%
CTGCTCCGCCGGGGTTGTGG+CGG - chr1_4:18910153-18910172 Msa0154400:three_prime_UTR 75.0%
GCTGCTCAACCGCCGCCGGA+AGG - chr1_4:18910209-18910228 Msa0154400:three_prime_UTR 75.0%
! TCCGCCGGGGTTGTGGCGGC+CGG - chr1_4:18910157-18910176 Msa0154400:three_prime_UTR 80.0%
! TCCGGCCGCCACAACCCCGG+CGG + chr1_4:18910161-18910180 None:intergenic 80.0%
! TCCGCCGGGGTTGTGGCGGC+CGG - chr1_4:18910157-18910176 Msa0154400:three_prime_UTR 80.0%
! TCCGGCCGCCACAACCCCGG+CGG + chr1_4:18910161-18910180 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 18909762 18911737 18909762 ID=Msa0154400;Name=Msa0154400
chr1_4 mRNA 18909762 18911737 18909762 ID=Msa0154400-mRNA-1;Parent=Msa0154400;Name=Msa0154400-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0.5|1|1|1|2|647|149
chr1_4 exon 18909762 18910480 18909762 ID=Msa0154400-mRNA-1:exon:6969;Parent=Msa0154400-mRNA-1
chr1_4 exon 18911360 18911737 18911360 ID=Msa0154400-mRNA-1:exon:6968;Parent=Msa0154400-mRNA-1
chr1_4 CDS 18911360 18911737 18911360 ID=Msa0154400-mRNA-1:cds;Parent=Msa0154400-mRNA-1
chr1_4 CDS 18910409 18910480 18910409 ID=Msa0154400-mRNA-1:cds;Parent=Msa0154400-mRNA-1
chr1_4 three_prime_UTR 18909762 18910408 18909762 ID=Msa0154400-mRNA-1:three_prime_utr;Parent=Msa0154400-mRNA-1
Gene Sequence

>Msa0154400

ATGTCTAACCACAAGGAAACAACAACTATCACCACAACAACCGATCTAGTAGAACCCACTTCTCAAAACACTCTAACAGTAAAAAAACCGCCGTCAAAAGACCGTCACAGTAAAGTAGACGGAAGAGGAAGACGCATAAGAATGCCCATAATCTGCGCCGCACGTGTTTTCCAGTTAACACGTGAGCTTGGTCATAAATCCGACGGTCAAACTATCGAATGGCTTCTCCGTCAAGCTGAACCGTCGATCATCGCCGCCACCGGTACCGGAACTACACCTGCTTCTTTCTCTTCTCTTTCTGAGCATAAACCTTTTCTTCAACCTTCTCCGTTTATTCTTGGTAAACGTTTACGTGATGATGATGGTGATGCTGTTTCGAATTTCATGCTTCTTTGCCTCCAATTGAGCATTATTGAAGGGATTGGGGTCCATTTGAAGTGGCCATGGTAG
Protein sequence

>Msa0154400

MSNHKETTTITTTTDLVEPTSQNTLTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFLQPSPFILGKRLRDDDGDAVSNFMLLCLQLSIIEGIGVHLKWPW*