Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014890 | XP_013466945.1 | 95.800 | 619 | 21 | 2 | 1 | 619 | 1 | 614 | 0.0 | 1208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014890 | sp|Q9FJ79|TOP1B_ARATH | 50.000 | 512 | 190 | 10 | 149 | 619 | 136 | 622 | 5.27e-146 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014890 | Msa1217670 | 0.810845 | 9.414340e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014890 | MtrunA17_Chr1g0165771 | 95.800 | 619 | 21 | 2 | 1 | 619 | 1 | 614 | 0.0 | 1208 |
| Msa0014890 | MtrunA17_Chr3g0142991 | 63.591 | 607 | 135 | 12 | 15 | 619 | 14 | 536 | 0.0 | 636 |
| Msa0014890 | MtrunA17_Chr4g0021051 | 56.175 | 664 | 173 | 11 | 11 | 619 | 23 | 623 | 0.0 | 580 |
| Msa0014890 | MtrunA17_Chr3g0143181 | 59.913 | 459 | 115 | 12 | 9 | 466 | 7 | 397 | 3.91e-142 | 420 |
| Msa0014890 | MtrunA17_Chr3g0143131 | 56.576 | 479 | 123 | 13 | 9 | 466 | 7 | 421 | 3.28e-130 | 390 |
| Msa0014890 | MtrunA17_Chr3g0143191 | 78.947 | 152 | 32 | 0 | 468 | 619 | 6 | 157 | 1.48e-77 | 244 |
| Msa0014890 | MtrunA17_Chr3g0143111 | 81.132 | 53 | 10 | 0 | 495 | 547 | 9 | 61 | 2.55e-25 | 100 |
| Msa0014890 | MtrunA17_Chr3g0143121 | 92.857 | 28 | 2 | 0 | 468 | 495 | 6 | 33 | 7.18e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014890 | AT5G55310.1 | 50.000 | 512 | 190 | 10 | 149 | 619 | 136 | 622 | 5.35e-147 | 448 |
| Msa0014890 | AT5G55300.1 | 53.516 | 512 | 197 | 11 | 140 | 617 | 118 | 622 | 1.90e-146 | 447 |
| Msa0014890 | AT5G55300.2 | 53.516 | 512 | 197 | 11 | 140 | 617 | 118 | 622 | 5.55e-146 | 446 |
Find 172 sgRNAs with CRISPR-Local
Find 423 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATGTGATTCAGAATT+TGG | 0.154512 | 1_1:-23894596 | Msa0014890:CDS |
| GTTATTCAAATACGTGTTTC+TGG | 0.158393 | 1_1:-23892437 | Msa0014890:CDS |
| GCTACAGAATAATAATAATT+TGG | 0.158467 | 1_1:-23895767 | Msa0014890:CDS |
| TGGCATGCTTATTCATTCTT+TGG | 0.234370 | 1_1:+23895467 | None:intergenic |
| AGAATTATATAGAGAGAATT+AGG | 0.239346 | 1_1:-23892249 | Msa0014890:CDS |
| GACTGACTGGAAGGTGATAT+TGG | 0.273127 | 1_1:-23894623 | Msa0014890:CDS |
| TCGGAGGAGGGAAGGGAGTT+GGG | 0.275437 | 1_1:+23897951 | None:intergenic |
| TTGAATAACTTATTATTGAT+TGG | 0.287792 | 1_1:+23892451 | None:intergenic |
| CAAAATTCAAGGAAAACTTT+TGG | 0.292105 | 1_1:-23894645 | Msa0014890:CDS |
| TTCTGGGAGCTAGTAGTTCT+TGG | 0.297922 | 1_1:-23892420 | Msa0014890:CDS |
| TATATAGATGTTAGATAATC+AGG | 0.312545 | 1_1:-23898035 | Msa0014890:five_prime_UTR |
| AATCGTACCTCCTCTTGTTC+AGG | 0.326070 | 1_1:+23895178 | None:intergenic |
| AGTTCAAAATTTGCATCATT+AGG | 0.330398 | 1_1:-23896075 | Msa0014890:CDS |
| CAGATGATTTGATGAAGTTC+AGG | 0.333592 | 1_1:+23898002 | None:intergenic |
| TTATCTAGTGGTCTCTTAAC+AGG | 0.340703 | 1_1:+23895628 | None:intergenic |
| TCACCAGGAATAGGACATTC+AGG | 0.342349 | 1_1:+23892643 | None:intergenic |
| TGGGGTAAAGATGCTCTATA+AGG | 0.344361 | 1_1:-23895221 | Msa0014890:CDS |
| GGCATGCTTATTCATTCTTT+GGG | 0.347185 | 1_1:+23895468 | None:intergenic |
| TCCCGTTCATGTTCATGTTA+AGG | 0.348445 | 1_1:-23896019 | Msa0014890:CDS |
| CCATTTGCAGAAGGCACGTC+AGG | 0.348723 | 1_1:+23896234 | None:intergenic |
| GGCTTGTGGTAAATTAAATA+TGG | 0.359173 | 1_1:-23896388 | Msa0014890:exon |
| CGGAGGAGGGAAGGGAGTTG+GGG | 0.360947 | 1_1:+23897952 | None:intergenic |
| AGTGACGTCGTAATTAATAT+TGG | 0.364207 | 1_1:-23892682 | Msa0014890:CDS |
| CAGTTACTTGGTTGGCGTAT+TGG | 0.364362 | 1_1:-23892480 | Msa0014890:CDS |
| CTACAGAATAATAATAATTT+GGG | 0.367356 | 1_1:-23895766 | Msa0014890:CDS |
| CCACAGCTATTTGTCAACTA+TGG | 0.375194 | 1_1:+23896412 | None:intergenic |
| CGTTCTGTGAGCTAGAACTT+TGG | 0.378900 | 1_1:+23896211 | None:intergenic |
| TGAATAACTTATTATTGATT+GGG | 0.379082 | 1_1:+23892452 | None:intergenic |
| TGAGATTTGTTGACAACAAC+AGG | 0.380616 | 1_1:+23895829 | None:intergenic |
| TTTACCCCATGGGGCTTGTA+AGG | 0.383102 | 1_1:+23895235 | None:intergenic |
| GTCGGAGGAGGGAAGGGAGT+TGG | 0.384859 | 1_1:+23897950 | None:intergenic |
| TGAGATTTCTTGACGACAAC+AGG | 0.389867 | 1_1:+23895874 | None:intergenic |
| TTCCACGGCAGATGCCTTAG+AGG | 0.390932 | 1_1:+23896167 | None:intergenic |
| AACTGTTCTGATTTATTGCC+TGG | 0.391976 | 1_1:+23895343 | None:intergenic |
| GTTCAGAAAGGACAGCAATA+TGG | 0.394323 | 1_1:-23895691 | Msa0014890:CDS |
| TGTCTCAACCTCAACCTCTA+AGG | 0.400713 | 1_1:-23896181 | Msa0014890:CDS |
| ACCTATGTGAGGTCCCCTTC+AGG | 0.407241 | 1_1:-23896099 | Msa0014890:CDS |
| GGAATAGGACATTCAGGAAT+TGG | 0.414990 | 1_1:+23892649 | None:intergenic |
| ATTCCTGAATGTCCTATTCC+TGG | 0.417771 | 1_1:-23892646 | Msa0014890:CDS |
| TTTGATGAAGTTCAGGTTGC+CGG | 0.420700 | 1_1:+23898009 | None:intergenic |
| TGAGATTGTGTGGTCGGAGG+AGG | 0.422932 | 1_1:+23897938 | None:intergenic |
| TTGTGTGGTCGGAGGAGGGA+AGG | 0.428133 | 1_1:+23897943 | None:intergenic |
| ATTTGGCACCAATCATAAAT+CGG | 0.428927 | 1_1:+23894556 | None:intergenic |
| TTATTCATTCTTTGGGAAAG+AGG | 0.430629 | 1_1:+23895475 | None:intergenic |
| TCCTTAACATGAACATGAAC+GGG | 0.432434 | 1_1:+23896018 | None:intergenic |
| AAATACCTTTCACCAGGAAT+AGG | 0.432646 | 1_1:+23892634 | None:intergenic |
| CCTGACGTGCCTTCTGCAAA+TGG | 0.434901 | 1_1:-23896234 | Msa0014890:CDS |
| TGAACCGAAGGTTGCGGAGG+TGG | 0.437744 | 1_1:-23895518 | Msa0014890:CDS |
| TATATTATCCATCTCGTCTT+CGG | 0.438591 | 1_1:+23895948 | None:intergenic |
| TTATTCAAATACGTGTTTCT+GGG | 0.442275 | 1_1:-23892436 | Msa0014890:CDS |
| ACTTTACACCGATTTATGAT+TGG | 0.443998 | 1_1:-23894564 | Msa0014890:CDS |
| TTCTGCCCATCACCGGAGCT+TGG | 0.447038 | 1_1:+23895301 | None:intergenic |
| CCTTTCTGAACATTTGAAAG+TGG | 0.447386 | 1_1:+23895703 | None:intergenic |
| TGTGTGGTCGGAGGAGGGAA+GGG | 0.447543 | 1_1:+23897944 | None:intergenic |
| CACGAATTTGATGATGAAGA+TGG | 0.452052 | 1_1:-23896363 | Msa0014890:CDS |
| GGGGTAAAGATGCTCTATAA+GGG | 0.452829 | 1_1:-23895220 | Msa0014890:CDS |
| TGAGAAAGCAAGGGCGTTGA+AGG | 0.458385 | 1_1:-23892371 | Msa0014890:intron |
| TTAGCATTAATTGACGGAGC+TGG | 0.460524 | 1_1:+23895559 | None:intergenic |
| GGGAGCTAGTAGTTCTTGGA+AGG | 0.463756 | 1_1:-23892416 | Msa0014890:CDS |
| GTCTGTTTAGCATTAATTGA+CGG | 0.464545 | 1_1:+23895553 | None:intergenic |
| TCATCCACCTCCGCAACCTT+CGG | 0.465576 | 1_1:+23895514 | None:intergenic |
| TTCTTGTTTAATACCAACAT+TGG | 0.470994 | 1_1:+23895666 | None:intergenic |
| ATATTAATTACGACGTCACT+TGG | 0.474080 | 1_1:+23892685 | None:intergenic |
| ATAATATACCATTGAGTGCT+AGG | 0.475378 | 1_1:-23895933 | Msa0014890:CDS |
| GAATTATATAGAGAGAATTA+GGG | 0.478214 | 1_1:-23892248 | Msa0014890:CDS |
| TTGGGGAGTAGCTGAAGAAC+AGG | 0.479535 | 1_1:+23897969 | None:intergenic |
| CACCTCCTTACAAGCCCCAT+GGG | 0.479803 | 1_1:-23895240 | Msa0014890:CDS |
| CCAGGACTGTTCCGTGGACG+TGG | 0.487654 | 1_1:-23892902 | Msa0014890:CDS |
| CATGCAAAAGGCAAAATTCA+AGG | 0.488666 | 1_1:-23894656 | Msa0014890:CDS |
| GGCAGATGCCTTAGAGGTTG+AGG | 0.488896 | 1_1:+23896173 | None:intergenic |
| ATCGTACCTCCTCTTGTTCA+GGG | 0.488962 | 1_1:+23895179 | None:intergenic |
| TGATTGGTGCCAAATTGAAA+AGG | 0.492961 | 1_1:-23894548 | Msa0014890:CDS |
| TAGCATTAATTGACGGAGCT+GGG | 0.493076 | 1_1:+23895560 | None:intergenic |
| TTCCTCCAAGCTCCGGTGAT+GGG | 0.501424 | 1_1:-23895306 | Msa0014890:CDS |
| CCACCTCCTTACAAGCCCCA+TGG | 0.506147 | 1_1:-23895241 | Msa0014890:CDS |
| ATCTGCCGTGGAATCTTCTG+TGG | 0.512707 | 1_1:-23896157 | Msa0014890:CDS |
| TGTTCAGGGGTCAAAGTCAC+CGG | 0.512937 | 1_1:+23895193 | None:intergenic |
| ATCTTCATCCTAGCACTCAA+TGG | 0.514251 | 1_1:+23895925 | None:intergenic |
| TACATGTGGGCTATTGTTGA+TGG | 0.514793 | 1_1:-23893360 | Msa0014890:CDS |
| GAGATTGTGTGGTCGGAGGA+GGG | 0.515890 | 1_1:+23897939 | None:intergenic |
| TGCCCATCACCGGAGCTTGG+AGG | 0.518261 | 1_1:+23895304 | None:intergenic |
| CCACGTCCACGGAACAGTCC+TGG | 0.521504 | 1_1:+23892902 | None:intergenic |
| CTTCCTCCAAGCTCCGGTGA+TGG | 0.522085 | 1_1:-23895307 | Msa0014890:CDS |
| GACATGATAATACAGTTACT+TGG | 0.523194 | 1_1:-23892492 | Msa0014890:CDS |
| ACTGACTGGAAGGTGATATT+GGG | 0.524562 | 1_1:-23894622 | Msa0014890:CDS |
| TGTTGATGGTGTTAAAGAGA+AGG | 0.524705 | 1_1:-23893346 | Msa0014890:intron |
| ATAGAGCATCTTTACCCCAT+GGG | 0.525433 | 1_1:+23895225 | None:intergenic |
| ACCCCATGGGGCTTGTAAGG+AGG | 0.526519 | 1_1:+23895238 | None:intergenic |
| CACATTATATGCGGTCATGC+GGG | 0.528299 | 1_1:-23894689 | Msa0014890:CDS |
| TGATAATACAGTTACTTGGT+TGG | 0.529080 | 1_1:-23892488 | Msa0014890:CDS |
| CCATGGGGCTTGTAAGGAGG+TGG | 0.531241 | 1_1:+23895241 | None:intergenic |
| CGAGGTTGAGATTGTGTGGT+CGG | 0.531526 | 1_1:+23897932 | None:intergenic |
| GGAGGAGAAAATGAAACAAG+AGG | 0.531842 | 1_1:-23893388 | Msa0014890:CDS |
| GGAAAATTGAAAAGACGCAT+TGG | 0.538081 | 1_1:-23892709 | Msa0014890:CDS |
| GGATACAGAATACATGCAAA+AGG | 0.538745 | 1_1:-23894668 | Msa0014890:CDS |
| CCACTTTCAAATGTTCAGAA+AGG | 0.540475 | 1_1:-23895703 | Msa0014890:CDS |
| TAATTCTAGCAAACATGGTA+AGG | 0.541301 | 1_1:-23895989 | Msa0014890:CDS |
| CAGCAATATGGCTCCAATGT+TGG | 0.545651 | 1_1:-23895679 | Msa0014890:CDS |
| CTCTTAACAGGCAGTGTAGA+CGG | 0.549550 | 1_1:+23895640 | None:intergenic |
| TATAGAGCATCTTTACCCCA+TGG | 0.551768 | 1_1:+23895224 | None:intergenic |
| CTCCTTAACATGAACATGAA+CGG | 0.552218 | 1_1:+23896017 | None:intergenic |
| GACTTTGACCCCTGAACAAG+AGG | 0.554890 | 1_1:-23895188 | Msa0014890:CDS |
| ACGTCGTAATTAATATTGGA+AGG | 0.557597 | 1_1:-23892678 | Msa0014890:CDS |
| ACGAATTTGATGATGAAGAT+GGG | 0.559311 | 1_1:-23896362 | Msa0014890:CDS |
| ACTAAACTTCCTCCAAGCTC+CGG | 0.560775 | 1_1:-23895313 | Msa0014890:CDS |
| AGATGATTTATTCACTGATG+TGG | 0.561330 | 1_1:+23895447 | None:intergenic |
| TGAAGAATCCGAAGACGAGA+TGG | 0.562000 | 1_1:-23895956 | Msa0014890:CDS |
| CTCAATTGCATTCAGAAACA+AGG | 0.566548 | 1_1:-23896302 | Msa0014890:CDS |
| ATGTTAGATAATCAGGTCAC+CGG | 0.567008 | 1_1:-23898028 | Msa0014890:five_prime_UTR |
| CATTTGCAGAAGGCACGTCA+GGG | 0.569400 | 1_1:+23896235 | None:intergenic |
| GAACTTTGGCCATTTGCAGA+AGG | 0.570536 | 1_1:+23896225 | None:intergenic |
| ATGTTGGTATTAAACAAGAA+AGG | 0.570563 | 1_1:-23895663 | Msa0014890:CDS |
| ATGATATTCCTTTGTCAGCA+AGG | 0.571899 | 1_1:-23895792 | Msa0014890:CDS |
| GACAATAATTCTAGCAAACA+TGG | 0.574782 | 1_1:-23895994 | Msa0014890:CDS |
| CCACATTATATGCGGTCATG+CGG | 0.576249 | 1_1:-23894690 | Msa0014890:CDS |
| GAAATCTGAACCGAAGGTTG+CGG | 0.580628 | 1_1:-23895524 | Msa0014890:CDS |
| AGGAAAAGTATGAGAAAGCA+AGG | 0.580780 | 1_1:-23892381 | Msa0014890:CDS |
| CGTTCATGTTCATGTTAAGG+AGG | 0.581195 | 1_1:-23896016 | Msa0014890:CDS |
| AACCTCTAAGGCATCTGCCG+TGG | 0.583051 | 1_1:-23896169 | Msa0014890:CDS |
| AATGTCCTATTCCTGGTGAA+AGG | 0.583669 | 1_1:-23892639 | Msa0014890:intron |
| GATGAGTGAGGAAGAGAACG+AGG | 0.588596 | 1_1:+23897914 | None:intergenic |
| ATCGGTGAAATCTGAACCGA+AGG | 0.590409 | 1_1:-23895530 | Msa0014890:CDS |
| ATCTGAACCGAAGGTTGCGG+AGG | 0.591598 | 1_1:-23895521 | Msa0014890:CDS |
| TGGGATGCTCTCCACGTCCA+CGG | 0.594039 | 1_1:+23892891 | None:intergenic |
| GATAGAGATGAAGATGAGTG+AGG | 0.594540 | 1_1:+23897902 | None:intergenic |
| GATGCTCTATAAGGGGAAGC+CGG | 0.601756 | 1_1:-23895212 | Msa0014890:CDS |
| CCGCATGACCGCATATAATG+TGG | 0.610695 | 1_1:+23894690 | None:intergenic |
| TGTAGCCGCCTTGCTGACAA+AGG | 0.611232 | 1_1:+23895784 | None:intergenic |
| GCTGAAGAACAGGTGTGGCA+CGG | 0.612422 | 1_1:+23897979 | None:intergenic |
| GGGTAAAGATGCTCTATAAG+GGG | 0.613483 | 1_1:-23895219 | Msa0014890:CDS |
| TCCTGAAGGGGACCTCACAT+AGG | 0.613650 | 1_1:+23896098 | None:intergenic |
| CGTCGTAATTAATATTGGAA+GGG | 0.614872 | 1_1:-23892677 | Msa0014890:CDS |
| AACAGTAAATACCTTTCACC+AGG | 0.615831 | 1_1:+23892628 | None:intergenic |
| TGGACTACTTTGGTTCACAA+TGG | 0.616634 | 1_1:-23895274 | Msa0014890:CDS |
| TAGTTGACAAATAGCTGTGG+AGG | 0.616997 | 1_1:-23896409 | Msa0014890:five_prime_UTR |
| AAATCTAGTAATAACAATGG+TGG | 0.618035 | 1_1:-23895742 | Msa0014890:CDS |
| AATTAATGCTAAACAGACAT+CGG | 0.620417 | 1_1:-23895548 | Msa0014890:CDS |
| TCTGCCGTGGAATCTTCTGT+GGG | 0.622872 | 1_1:-23896156 | Msa0014890:CDS |
| TAGAGCATCTTTACCCCATG+GGG | 0.631056 | 1_1:+23895226 | None:intergenic |
| TATACCCACAGAAGATTCCA+CGG | 0.633738 | 1_1:+23896152 | None:intergenic |
| GGAGCTAGTAGTTCTTGGAA+GGG | 0.634366 | 1_1:-23892415 | Msa0014890:CDS |
| GAGCTAGTAGTTCTTGGAAG+GGG | 0.635071 | 1_1:-23892414 | Msa0014890:CDS |
| TTCTAGCTCACAGAACGGCA+AGG | 0.636392 | 1_1:-23896205 | Msa0014890:CDS |
| AGAACGAGGTTGAGATTGTG+TGG | 0.636979 | 1_1:+23897928 | None:intergenic |
| ATTTGCAGAAGGCACGTCAG+GGG | 0.639024 | 1_1:+23896236 | None:intergenic |
| CATGGGGCTTGTAAGGAGGT+GGG | 0.640775 | 1_1:+23895242 | None:intergenic |
| CAAATAGCTGTGGAGGCTTG+TGG | 0.641729 | 1_1:-23896402 | Msa0014890:five_prime_UTR |
| GGAAAATCTAGTAATAACAA+TGG | 0.642336 | 1_1:-23895745 | Msa0014890:CDS |
| CTTCTCATAGTCACGATGGA+CGG | 0.642362 | 1_1:-23896272 | Msa0014890:CDS |
| GGTTGAGATTGTGTGGTCGG+AGG | 0.644573 | 1_1:+23897935 | None:intergenic |
| TTGGAAGGGGCAAAGTGACA+AGG | 0.645098 | 1_1:-23892401 | Msa0014890:CDS |
| GAACCACCAGGACTGTTCCG+TGG | 0.646064 | 1_1:-23892908 | Msa0014890:CDS |
| TGGACGTGGAGAGCATCCCA+AGG | 0.646324 | 1_1:-23892888 | Msa0014890:intron |
| CAAAGTTCTAGCTCACAGAA+CGG | 0.651831 | 1_1:-23896210 | Msa0014890:CDS |
| ACAAGAGGAGAAATACATGT+GGG | 0.652557 | 1_1:-23893373 | Msa0014890:CDS |
| CCATAGTTGACAAATAGCTG+TGG | 0.655992 | 1_1:-23896412 | Msa0014890:five_prime_UTR |
| CAAATCTCAAAACCTATGTG+AGG | 0.661711 | 1_1:-23896110 | Msa0014890:CDS |
| TTTCTTAACAGAAGAATGCG+AGG | 0.662718 | 1_1:+23895597 | None:intergenic |
| GAGGAATCAGTCTTATCTAG+TGG | 0.665670 | 1_1:+23895616 | None:intergenic |
| TCGTACCTCCTCTTGTTCAG+GGG | 0.668517 | 1_1:+23895180 | None:intergenic |
| TTTGACCCCTGAACAAGAGG+AGG | 0.669124 | 1_1:-23895185 | Msa0014890:intron |
| AACAAGAGGAGAAATACATG+TGG | 0.673205 | 1_1:-23893374 | Msa0014890:CDS |
| TCAACTTCTCATAGTCACGA+TGG | 0.681705 | 1_1:-23896276 | Msa0014890:CDS |
| AAACGTCACTAAAGTCAACA+AGG | 0.682671 | 1_1:-23895407 | Msa0014890:CDS |
| GGAAAAGTATGAGAAAGCAA+GGG | 0.683454 | 1_1:-23892380 | Msa0014890:CDS |
| GAGTAGCTGAAGAACAGGTG+TGG | 0.685987 | 1_1:+23897974 | None:intergenic |
| GCAGGTTGCCACATTATATG+CGG | 0.693505 | 1_1:-23894698 | Msa0014890:intron |
| TTATATAGAGAGAATTAGGG+CGG | 0.700748 | 1_1:-23892245 | Msa0014890:CDS |
| CGTCCACGGAACAGTCCTGG+TGG | 0.703564 | 1_1:+23892905 | None:intergenic |
| ACCTCCTTACAAGCCCCATG+GGG | 0.724905 | 1_1:-23895239 | Msa0014890:CDS |
| ATATTCCTTTGTCAGCAAGG+CGG | 0.731343 | 1_1:-23895789 | Msa0014890:CDS |
| AGGATGAAGATGAACAGTGA+CGG | 0.750770 | 1_1:-23895913 | Msa0014890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTATATTTTTTTTAGT+TGG | - | chr1_1:23892617-23892636 | Msa0014890:intron | 10.0% |
| !! | TTAAAAAAAATAAAACTCTT+AGG | + | chr1_1:23895422-23895441 | None:intergenic | 10.0% |
| !! | ATACTAATTTATTTAATGTT+AGG | + | chr1_1:23896000-23896019 | None:intergenic | 10.0% |
| !!! | TAATTTTTGTTAAATCTTTT+AGG | - | chr1_1:23897291-23897310 | Msa0014890:intron | 10.0% |
| !!! | TTATACTTTATTTTATTAGA+TGG | - | chr1_1:23897508-23897527 | Msa0014890:intron | 10.0% |
| !!! | TATACTTTATTTTATTAGAT+GGG | - | chr1_1:23897509-23897528 | Msa0014890:intron | 10.0% |
| !!! | TATCAAATTTTTATTCATCT+TGG | - | chr1_1:23892456-23892475 | Msa0014890:CDS | 15.0% |
| !! | ATTATGATTATGATTAAGAT+TGG | - | chr1_1:23892576-23892595 | Msa0014890:intron | 15.0% |
| !!! | AACACAAAAAATATAGATTT+TGG | - | chr1_1:23892877-23892896 | Msa0014890:intron | 15.0% |
| !!! | GTTTTATTCATTATTAAGAT+GGG | - | chr1_1:23893136-23893155 | Msa0014890:intron | 15.0% |
| !! | CTACAGAATAATAATAATTT+GGG | - | chr1_1:23894473-23894492 | Msa0014890:intron | 15.0% |
| !!! | TCATTTATATCATTTTCAAA+TGG | + | chr1_1:23895763-23895782 | None:intergenic | 15.0% |
| !!! | TGATAATTGTTATTGTTTAT+TGG | - | chr1_1:23897380-23897399 | Msa0014890:intron | 15.0% |
| !!! | TGAATAACTTATTATTGATT+GGG | + | chr1_1:23897790-23897809 | None:intergenic | 15.0% |
| !! | TTGAATAACTTATTATTGAT+TGG | + | chr1_1:23897791-23897810 | None:intergenic | 15.0% |
| !!! | TAAAAGAACCTTTTTAATTT+TGG | - | chr1_1:23897946-23897965 | Msa0014890:five_prime_UTR | 15.0% |
| !! | CTGAAATTGATGAAAATAAA+GGG | + | chr1_1:23892398-23892417 | None:intergenic | 20.0% |
| !! | ACTGAAATTGATGAAAATAA+AGG | + | chr1_1:23892399-23892418 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTATTGTGTTGAT+TGG | - | chr1_1:23892535-23892554 | Msa0014890:intron | 20.0% |
| !!! | ATATTTTTTTTAGTTGGTTG+TGG | - | chr1_1:23892623-23892642 | Msa0014890:intron | 20.0% |
| !!! | TTATTCTGTTGATTGATAAT+GGG | - | chr1_1:23893114-23893133 | Msa0014890:intron | 20.0% |
| !!! | GGTTTTATTCATTATTAAGA+TGG | - | chr1_1:23893135-23893154 | Msa0014890:intron | 20.0% |
| !! | ATGAAGCAATAATTGATATT+TGG | - | chr1_1:23893520-23893539 | Msa0014890:intron | 20.0% |
| !! | TGAAGCAATAATTGATATTT+GGG | - | chr1_1:23893521-23893540 | Msa0014890:intron | 20.0% |
| !!! | GAAATCCTTTTAAAAATTAC+TGG | + | chr1_1:23893903-23893922 | None:intergenic | 20.0% |
| !! | GCTACAGAATAATAATAATT+TGG | - | chr1_1:23894472-23894491 | Msa0014890:intron | 20.0% |
| !!! | TTTAGTTTTTTGTGAAATTG+AGG | - | chr1_1:23895443-23895462 | Msa0014890:CDS | 20.0% |
| !! | AAAATTAACTGACAAAAACA+AGG | - | chr1_1:23896027-23896046 | Msa0014890:CDS | 20.0% |
| !! | TAATTCCTAATATCATCATA+CGG | - | chr1_1:23896097-23896116 | Msa0014890:CDS | 20.0% |
| !! | TAAAAGGAAAAAAAATCTCA+AGG | + | chr1_1:23896280-23896299 | None:intergenic | 20.0% |
| !! | TTATGATGTACTTCATTATT+TGG | + | chr1_1:23896553-23896572 | None:intergenic | 20.0% |
| !!! | ACATTTCTTTTTCAATCTTT+GGG | - | chr1_1:23896590-23896609 | Msa0014890:intron | 20.0% |
| !!! | AGCTTTTGGATTTTAATATA+TGG | - | chr1_1:23896680-23896699 | Msa0014890:intron | 20.0% |
| !!! | GCTTTTGGATTTTAATATAT+GGG | - | chr1_1:23896681-23896700 | Msa0014890:intron | 20.0% |
| !! | TTAAAAAGACAAACAAGTTT+GGG | + | chr1_1:23896945-23896964 | None:intergenic | 20.0% |
| !! | ATTAAAAAGACAAACAAGTT+TGG | + | chr1_1:23896946-23896965 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAATCTTTTAGGT+TGG | - | chr1_1:23897295-23897314 | Msa0014890:intron | 20.0% |
| !!! | AAAAAAATGTAAACTTGCTT+CGG | - | chr1_1:23897408-23897427 | Msa0014890:intron | 20.0% |
| !! | TTAAAAGCAAATGAATACTA+TGG | - | chr1_1:23897658-23897677 | Msa0014890:intron | 20.0% |
| !!! | AAGGTATTCCAAAATTAAAA+AGG | + | chr1_1:23897957-23897976 | None:intergenic | 20.0% |
| !! | AGAATTATATAGAGAGAATT+AGG | - | chr1_1:23897990-23898009 | Msa0014890:five_prime_UTR | 20.0% |
| !! | GAATTATATAGAGAGAATTA+GGG | - | chr1_1:23897991-23898010 | Msa0014890:five_prime_UTR | 20.0% |
| !!! | TTGTGATTATGTTTTTGCTA+TGG | + | chr1_1:23892368-23892387 | None:intergenic | 25.0% |
| ! | ATAGCAAAAACATAATCACA+AGG | - | chr1_1:23892367-23892386 | Msa0014890:intron | 25.0% |
| !! | TTTGTGTAGAATATGTGTTT+TGG | - | chr1_1:23892487-23892506 | Msa0014890:CDS | 25.0% |
| ! | ATGATTAAGATTGGATTCAT+TGG | - | chr1_1:23892585-23892604 | Msa0014890:intron | 25.0% |
| ! | ATTCAGTTATTGTATGTGAT+TGG | - | chr1_1:23892723-23892742 | Msa0014890:intron | 25.0% |
| ! | TTCAGTTATTGTATGTGATT+GGG | - | chr1_1:23892724-23892743 | Msa0014890:intron | 25.0% |
| ! | ATGTTGTTAATCATTGATAG+TGG | - | chr1_1:23893066-23893085 | Msa0014890:intron | 25.0% |
| !!! | AATCATTGATAGTGGAAAAA+AGG | - | chr1_1:23893074-23893093 | Msa0014890:intron | 25.0% |
| !! | CTTATTCTGTTGATTGATAA+TGG | - | chr1_1:23893113-23893132 | Msa0014890:intron | 25.0% |
| !!! | GGAAAGTTCATTTTTTTAGA+TGG | - | chr1_1:23893157-23893176 | Msa0014890:intron | 25.0% |
| !!! | TTCATTTTTTTAGATGGTTG+TGG | - | chr1_1:23893163-23893182 | Msa0014890:intron | 25.0% |
| !!! | TTATGCTTTTTTCTATTGAC+TGG | - | chr1_1:23893255-23893274 | Msa0014890:intron | 25.0% |
| !! | ATGTTAGGGTTTTTAAATAG+CGG | + | chr1_1:23893466-23893485 | None:intergenic | 25.0% |
| ! | AGTTATTAGTACTAGTTACT+AGG | + | chr1_1:23893760-23893779 | None:intergenic | 25.0% |
| ! | AGTTCAAAATTTGCATCATT+AGG | - | chr1_1:23894164-23894183 | Msa0014890:intron | 25.0% |
| ! | GGAAAATCTAGTAATAACAA+TGG | - | chr1_1:23894494-23894513 | Msa0014890:intron | 25.0% |
| ! | AAATCTAGTAATAACAATGG+TGG | - | chr1_1:23894497-23894516 | Msa0014890:intron | 25.0% |
| !! | TTCTTGTTTAATACCAACAT+TGG | + | chr1_1:23894576-23894595 | None:intergenic | 25.0% |
| ! | ATGTTGGTATTAAACAAGAA+AGG | - | chr1_1:23894576-23894595 | Msa0014890:CDS | 25.0% |
| ! | AATTAATGCTAAACAGACAT+CGG | - | chr1_1:23894691-23894710 | Msa0014890:CDS | 25.0% |
| !! | TTTGCCTTTTTCTTAAAAGA+TGG | + | chr1_1:23894866-23894885 | None:intergenic | 25.0% |
| !! | ACAAATGTTTTCACTGTTTT+GGG | - | chr1_1:23895093-23895112 | Msa0014890:intron | 25.0% |
| !! | GATACATTTTTCACTTTACA+AGG | - | chr1_1:23895201-23895220 | Msa0014890:CDS | 25.0% |
| !! | ACTTTACAAGGATATTTTGT+GGG | - | chr1_1:23895213-23895232 | Msa0014890:CDS | 25.0% |
| ! | AAAATAAAACTCTTAGGACT+TGG | + | chr1_1:23895416-23895435 | None:intergenic | 25.0% |
| ! | TAAACTTAGTATGTATATGC+AGG | - | chr1_1:23895523-23895542 | Msa0014890:CDS | 25.0% |
| !! | CAAAATTCAAGGAAAACTTT+TGG | - | chr1_1:23895594-23895613 | Msa0014890:CDS | 25.0% |
| ! | AAATCATGTGATTCAGAATT+TGG | - | chr1_1:23895643-23895662 | Msa0014890:CDS | 25.0% |
| ! | TTAAGTTCGTAAATCTTACA+TGG | - | chr1_1:23895916-23895935 | Msa0014890:CDS | 25.0% |
| ! | TAAGTTCGTAAATCTTACAT+GGG | - | chr1_1:23895917-23895936 | Msa0014890:CDS | 25.0% |
| ! | AGGAATTAGGAATAAACAAA+TGG | + | chr1_1:23896085-23896104 | None:intergenic | 25.0% |
| ! | GTATGATGATATTAGGAATT+AGG | + | chr1_1:23896098-23896117 | None:intergenic | 25.0% |
| ! | TGGAAGGTTGTAAAATTAAA+AGG | + | chr1_1:23896296-23896315 | None:intergenic | 25.0% |
| !!! | GACATTTCTTTTTCAATCTT+TGG | - | chr1_1:23896589-23896608 | Msa0014890:intron | 25.0% |
| !! | TAAACTTTATAAACTAGCCT+AGG | + | chr1_1:23896633-23896652 | None:intergenic | 25.0% |
| !! | GCTAGTTTATAAAGTTTACA+TGG | - | chr1_1:23896635-23896654 | Msa0014890:intron | 25.0% |
| ! | AAAATCCAAAAGCTTCAAAA+GGG | + | chr1_1:23896674-23896693 | None:intergenic | 25.0% |
| ! | TAAAATCCAAAAGCTTCAAA+AGG | + | chr1_1:23896675-23896694 | None:intergenic | 25.0% |
| !! | TTAATATATGGGATTTGTTC+CGG | - | chr1_1:23896692-23896711 | Msa0014890:intron | 25.0% |
| !!! | TTGTTTTTATCAGGAGAAAA+AGG | - | chr1_1:23896821-23896840 | Msa0014890:intron | 25.0% |
| !! | TCTTTTTAATGTTTGATCAG+CGG | - | chr1_1:23896956-23896975 | Msa0014890:intron | 25.0% |
| !!! | AGAAGTTTCTTTTTAAGCAT+AGG | - | chr1_1:23897003-23897022 | Msa0014890:intron | 25.0% |
| ! | ACATTTCAAATGTAAAAGCT+TGG | + | chr1_1:23897220-23897239 | None:intergenic | 25.0% |
| ! | ACAATTATCATAACAACCTT+GGG | + | chr1_1:23897370-23897389 | None:intergenic | 25.0% |
| ! | AACAATTATCATAACAACCT+TGG | + | chr1_1:23897371-23897390 | None:intergenic | 25.0% |
| ! | TTATTCAAATACGTGTTTCT+GGG | - | chr1_1:23897803-23897822 | Msa0014890:intron | 25.0% |
| TCAAGAAGTAACAGACAAAA+GGG | + | chr1_1:23892424-23892443 | None:intergenic | 30.0% | |
| ATCAAGAAGTAACAGACAAA+AGG | + | chr1_1:23892425-23892444 | None:intergenic | 30.0% | |
| ! | TAATCTTCCTTTTGTGTTTG+TGG | - | chr1_1:23892913-23892932 | Msa0014890:CDS | 30.0% |
| ACATAAACCACAAACACAAA+AGG | + | chr1_1:23892923-23892942 | None:intergenic | 30.0% | |
| GGAAAACAAATAGAGTTCTA+GGG | + | chr1_1:23893024-23893043 | None:intergenic | 30.0% | |
| AGGAAAACAAATAGAGTTCT+AGG | + | chr1_1:23893025-23893044 | None:intergenic | 30.0% | |
| !! | GAACTCTATTTGTTTTCCTT+AGG | - | chr1_1:23893026-23893045 | Msa0014890:intron | 30.0% |
| GACTGGATACTGTTTAAATT+TGG | - | chr1_1:23893272-23893291 | Msa0014890:intron | 30.0% | |
| TGGTTATTGCATATAGATTG+TGG | - | chr1_1:23893292-23893311 | Msa0014890:intron | 30.0% | |
| ! | TGATATTTGGGTGTTCTTTT+TGG | - | chr1_1:23893533-23893552 | Msa0014890:intron | 30.0% |
| GGCTTGTGGTAAATTAAATA+TGG | - | chr1_1:23893851-23893870 | Msa0014890:intron | 30.0% | |
| !! | ACGAATTTGATGATGAAGAT+GGG | - | chr1_1:23893877-23893896 | Msa0014890:intron | 30.0% |
| ! | ATGGGCCAGTAATTTTTAAA+AGG | - | chr1_1:23893895-23893914 | Msa0014890:intron | 30.0% |
| ! | AAATTTTGAACTTCCTGAAG+GGG | + | chr1_1:23894156-23894175 | None:intergenic | 30.0% |
| ! | CAAATTTTGAACTTCCTGAA+GGG | + | chr1_1:23894157-23894176 | None:intergenic | 30.0% |
| GACAATAATTCTAGCAAACA+TGG | - | chr1_1:23894245-23894264 | Msa0014890:intron | 30.0% | |
| TAATTCTAGCAAACATGGTA+AGG | - | chr1_1:23894250-23894269 | Msa0014890:intron | 30.0% | |
| TATATTATCCATCTCGTCTT+CGG | + | chr1_1:23894294-23894313 | None:intergenic | 30.0% | |
| ATAATATACCATTGAGTGCT+AGG | - | chr1_1:23894306-23894325 | Msa0014890:intron | 30.0% | |
| GTCTGTTTAGCATTAATTGA+CGG | + | chr1_1:23894689-23894708 | None:intergenic | 30.0% | |
| ! | TTATTCATTCTTTGGGAAAG+AGG | + | chr1_1:23894767-23894786 | None:intergenic | 30.0% |
| AGATGATTTATTCACTGATG+TGG | + | chr1_1:23894795-23894814 | None:intergenic | 30.0% | |
| !! | TGCTCCATCTTTTAAGAAAA+AGG | - | chr1_1:23894859-23894878 | Msa0014890:intron | 30.0% |
| AAGGCAAATTTCAAAAAACC+AGG | - | chr1_1:23894878-23894897 | Msa0014890:intron | 30.0% | |
| ! | GACAAATGTTTTCACTGTTT+TGG | - | chr1_1:23895092-23895111 | Msa0014890:intron | 30.0% |
| !! | TGTTTTTGTGAGTTTCACAT+TGG | - | chr1_1:23895143-23895162 | Msa0014890:intron | 30.0% |
| ACATTGGATGTTATATGACT+TGG | - | chr1_1:23895159-23895178 | Msa0014890:intron | 30.0% | |
| ! | CACTTTACAAGGATATTTTG+TGG | - | chr1_1:23895212-23895231 | Msa0014890:CDS | 30.0% |
| ! | CTTTACAAGGATATTTTGTG+GGG | - | chr1_1:23895214-23895233 | Msa0014890:CDS | 30.0% |
| ACATTTCTTACCTTACATGT+TGG | - | chr1_1:23895364-23895383 | Msa0014890:CDS | 30.0% | |
| !! | ACTTTACACCGATTTATGAT+TGG | - | chr1_1:23895675-23895694 | Msa0014890:CDS | 30.0% |
| ATTTGGCACCAATCATAAAT+CGG | + | chr1_1:23895686-23895705 | None:intergenic | 30.0% | |
| ! | TCTTCTTCTCCTTTTCAATT+TGG | + | chr1_1:23895703-23895722 | None:intergenic | 30.0% |
| ! | GAATATCTCAAAGCATCATT+TGG | - | chr1_1:23895781-23895800 | Msa0014890:CDS | 30.0% |
| !!! | AGCATCATTTGGTTTTTACA+TGG | - | chr1_1:23895792-23895811 | Msa0014890:CDS | 30.0% |
| AAACAACTAACATCTGCATA+TGG | + | chr1_1:23895839-23895858 | None:intergenic | 30.0% | |
| TTGAGAATTAACTTTGCGTT+TGG | - | chr1_1:23895858-23895877 | Msa0014890:CDS | 30.0% | |
| ! | AACAGACAAAGGGTTAATTT+TGG | - | chr1_1:23896317-23896336 | Msa0014890:CDS | 30.0% |
| TAAACTCTGTATGAGATACA+TGG | + | chr1_1:23896400-23896419 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTCAATCTTTGGGA+AGG | - | chr1_1:23896594-23896613 | Msa0014890:intron | 30.0% |
| ATGTATATGCCTGTATTAAC+CGG | + | chr1_1:23896714-23896733 | None:intergenic | 30.0% | |
| CTAAGAAAAAGCTTCACAAA+AGG | + | chr1_1:23896754-23896773 | None:intergenic | 30.0% | |
| CTGATAAAAACAAGAGAAGA+GGG | + | chr1_1:23896814-23896833 | None:intergenic | 30.0% | |
| ! | TTTCATTTTCTCCTCCTTTA+GGG | + | chr1_1:23896847-23896866 | None:intergenic | 30.0% |
| !! | GTTTCTTTTTAAGCATAGGT+AGG | - | chr1_1:23897007-23897026 | Msa0014890:intron | 30.0% |
| AGTAATTGACAATTCCTTCT+TGG | - | chr1_1:23897037-23897056 | Msa0014890:intron | 30.0% | |
| GTAATTGACAATTCCTTCTT+GGG | - | chr1_1:23897038-23897057 | Msa0014890:intron | 30.0% | |
| !! | ACAATTTTTCCCTGTTGTTT+TGG | - | chr1_1:23897106-23897125 | Msa0014890:intron | 30.0% |
| ATATTAATTACGACGTCACT+TGG | + | chr1_1:23897557-23897576 | None:intergenic | 30.0% | |
| AGTGACGTCGTAATTAATAT+TGG | - | chr1_1:23897557-23897576 | Msa0014890:intron | 30.0% | |
| ACGTCGTAATTAATATTGGA+AGG | - | chr1_1:23897561-23897580 | Msa0014890:intron | 30.0% | |
| CGTCGTAATTAATATTGGAA+GGG | - | chr1_1:23897562-23897581 | Msa0014890:intron | 30.0% | |
| TTTACTGTTCCATAACTTCT+TGG | - | chr1_1:23897625-23897644 | Msa0014890:intron | 30.0% | |
| AGCAAATGAATACTATGGAT+TGG | - | chr1_1:23897663-23897682 | Msa0014890:intron | 30.0% | |
| GACATGATAATACAGTTACT+TGG | - | chr1_1:23897747-23897766 | Msa0014890:intron | 30.0% | |
| TGATAATACAGTTACTTGGT+TGG | - | chr1_1:23897751-23897770 | Msa0014890:intron | 30.0% | |
| GTTATTCAAATACGTGTTTC+TGG | - | chr1_1:23897802-23897821 | Msa0014890:intron | 30.0% | |
| !!! | TTTTGGAATACCTTAACATC+TGG | - | chr1_1:23897963-23897982 | Msa0014890:five_prime_UTR | 30.0% |
| ! | TTTGGAATACCTTAACATCT+GGG | - | chr1_1:23897964-23897983 | Msa0014890:five_prime_UTR | 30.0% |
| TTATATAGAGAGAATTAGGG+CGG | - | chr1_1:23897994-23898013 | Msa0014890:five_prime_UTR | 30.0% | |
| ATGTTAGATAATCAGGTCAC+CGG | - | chr1_1:23892211-23892230 | Msa0014890:CDS | 35.0% | |
| CAGATGATTTGATGAAGTTC+AGG | + | chr1_1:23892240-23892259 | None:intergenic | 35.0% | |
| TGTATGTGATTGGGATGAAT+TGG | - | chr1_1:23892733-23892752 | Msa0014890:intron | 35.0% | |
| TTCCGAACAATTCATCCTAT+GGG | + | chr1_1:23892770-23892789 | None:intergenic | 35.0% | |
| TTTCCGAACAATTCATCCTA+TGG | + | chr1_1:23892771-23892790 | None:intergenic | 35.0% | |
| GACAGGAGATAAGTAAAATC+CGG | + | chr1_1:23892828-23892847 | None:intergenic | 35.0% | |
| ! | CTTATGCAGTTTCATTTTGC+TGG | - | chr1_1:23892964-23892983 | Msa0014890:intron | 35.0% |
| !! | TCCTTAGGCATTTTAGCATT+TGG | - | chr1_1:23893041-23893060 | Msa0014890:intron | 35.0% |
| !! | CCTTAGGCATTTTAGCATTT+GGG | - | chr1_1:23893042-23893061 | Msa0014890:intron | 35.0% |
| !! | CTTAGGCATTTTAGCATTTG+GGG | - | chr1_1:23893043-23893062 | Msa0014890:intron | 35.0% |
| GACAGAGTATGTGTATAAGT+CGG | + | chr1_1:23893230-23893249 | None:intergenic | 35.0% | |
| TTATTGTAAGCCCTAGCATT+TGG | - | chr1_1:23893372-23893391 | Msa0014890:CDS | 35.0% | |
| !! | CACGAATTTGATGATGAAGA+TGG | - | chr1_1:23893876-23893895 | Msa0014890:intron | 35.0% |
| CTCAATTGCATTCAGAAACA+AGG | - | chr1_1:23893937-23893956 | Msa0014890:intron | 35.0% | |
| CAAATCTCAAAACCTATGTG+AGG | - | chr1_1:23894129-23894148 | Msa0014890:intron | 35.0% | |
| ! | GCAAATTTTGAACTTCCTGA+AGG | + | chr1_1:23894158-23894177 | None:intergenic | 35.0% |
| TCCTTAACATGAACATGAAC+GGG | + | chr1_1:23894224-23894243 | None:intergenic | 35.0% | |
| CTCCTTAACATGAACATGAA+CGG | + | chr1_1:23894225-23894244 | None:intergenic | 35.0% | |
| !!! | GACAACAGGAGTTGTTTTTT+TGG | + | chr1_1:23894354-23894373 | None:intergenic | 35.0% |
| !! | TGAGATTTGTTGACAACAAC+AGG | + | chr1_1:23894413-23894432 | None:intergenic | 35.0% |
| ATGATATTCCTTTGTCAGCA+AGG | - | chr1_1:23894447-23894466 | Msa0014890:intron | 35.0% | |
| CCTTTCTGAACATTTGAAAG+TGG | + | chr1_1:23894539-23894558 | None:intergenic | 35.0% | |
| CCACTTTCAAATGTTCAGAA+AGG | - | chr1_1:23894536-23894555 | Msa0014890:CDS | 35.0% | |
| TTATCTAGTGGTCTCTTAAC+AGG | + | chr1_1:23894614-23894633 | None:intergenic | 35.0% | |
| TTTCTTAACAGAAGAATGCG+AGG | + | chr1_1:23894645-23894664 | None:intergenic | 35.0% | |
| GGCATGCTTATTCATTCTTT+GGG | + | chr1_1:23894774-23894793 | None:intergenic | 35.0% | |
| TGGCATGCTTATTCATTCTT+TGG | + | chr1_1:23894775-23894794 | None:intergenic | 35.0% | |
| AAACGTCACTAAAGTCAACA+AGG | - | chr1_1:23894832-23894851 | Msa0014890:intron | 35.0% | |
| AACTGTTCTGATTTATTGCC+TGG | + | chr1_1:23894899-23894918 | None:intergenic | 35.0% | |
| !! | GCAGAAAAAATGGACTACTT+TGG | - | chr1_1:23894955-23894974 | Msa0014890:intron | 35.0% |
| ! | ATATTTTGTGGGGTTGAGTT+TGG | - | chr1_1:23895224-23895243 | Msa0014890:CDS | 35.0% |
| TTCATGATGTCCAGTCATAT+GGG | - | chr1_1:23895263-23895282 | Msa0014890:CDS | 35.0% | |
| !!! | TACCTTACATGTTGGTTTTG+TGG | - | chr1_1:23895372-23895391 | Msa0014890:CDS | 35.0% |
| !!! | ACCTTACATGTTGGTTTTGT+GGG | - | chr1_1:23895373-23895392 | Msa0014890:CDS | 35.0% |
| AAACTCTTAGGACTTGGAAA+GGG | + | chr1_1:23895410-23895429 | None:intergenic | 35.0% | |
| AAAACTCTTAGGACTTGGAA+AGG | + | chr1_1:23895411-23895430 | None:intergenic | 35.0% | |
| GGATACAGAATACATGCAAA+AGG | - | chr1_1:23895571-23895590 | Msa0014890:CDS | 35.0% | |
| CATGCAAAAGGCAAAATTCA+AGG | - | chr1_1:23895583-23895602 | Msa0014890:CDS | 35.0% | |
| !! | TGATTGGTGCCAAATTGAAA+AGG | - | chr1_1:23895691-23895710 | Msa0014890:CDS | 35.0% |
| GAATTAACTTTGCGTTTGGT+TGG | - | chr1_1:23895862-23895881 | Msa0014890:CDS | 35.0% | |
| AACTTAACGACGCTATGATT+TGG | + | chr1_1:23895903-23895922 | None:intergenic | 35.0% | |
| TCGTAAATCTTACATGGGAT+TGG | - | chr1_1:23895922-23895941 | Msa0014890:CDS | 35.0% | |
| ATCTTACATGGGATTGGATA+AGG | - | chr1_1:23895928-23895947 | Msa0014890:CDS | 35.0% | |
| GTATGCCGTATGATGATATT+AGG | + | chr1_1:23896105-23896124 | None:intergenic | 35.0% | |
| GTGGGAAAACGATATTGTAA+GGG | + | chr1_1:23896127-23896146 | None:intergenic | 35.0% | |
| AGTGGGAAAACGATATTGTA+AGG | + | chr1_1:23896128-23896147 | None:intergenic | 35.0% | |
| AAAGATTGTCTTCCAGAAGT+GGG | + | chr1_1:23896145-23896164 | None:intergenic | 35.0% | |
| AATTAACCCTTTGTCTGTTC+TGG | + | chr1_1:23896316-23896335 | None:intergenic | 35.0% | |
| !! | GACAAAGGGTTAATTTTGGT+AGG | - | chr1_1:23896321-23896340 | Msa0014890:CDS | 35.0% |
| AACTCAGAACTCGTTATGTT+GGG | + | chr1_1:23896449-23896468 | None:intergenic | 35.0% | |
| !! | AACATAACGAGTTCTGAGTT+GGG | - | chr1_1:23896449-23896468 | Msa0014890:intron | 35.0% |
| !! | AAGGAAGTTGATATGAACCT+AGG | - | chr1_1:23896613-23896632 | Msa0014890:intron | 35.0% |
| !!! | ATACTCCCTTTTGAAGCTTT+TGG | - | chr1_1:23896666-23896685 | Msa0014890:intron | 35.0% |
| CCTGATAAAAACAAGAGAAG+AGG | + | chr1_1:23896815-23896834 | None:intergenic | 35.0% | |
| !!! | CCTCTTCTCTTGTTTTTATC+AGG | - | chr1_1:23896812-23896831 | Msa0014890:intron | 35.0% |
| ! | GTTTCATTTTCTCCTCCTTT+AGG | + | chr1_1:23896848-23896867 | None:intergenic | 35.0% |
| AACAAGAGGAGAAATACATG+TGG | - | chr1_1:23896865-23896884 | Msa0014890:intron | 35.0% | |
| ACAAGAGGAGAAATACATGT+GGG | - | chr1_1:23896866-23896885 | Msa0014890:intron | 35.0% | |
| !! | TGTTGATGGTGTTAAAGAGA+AGG | - | chr1_1:23896893-23896912 | Msa0014890:intron | 35.0% |
| !!! | TTTTTCCCTGTTGTTTTGGT+TGG | - | chr1_1:23897110-23897129 | Msa0014890:intron | 35.0% |
| ATCAGCTTCTTGTGCATTAA+TGG | - | chr1_1:23897133-23897152 | Msa0014890:intron | 35.0% | |
| TGCATTAATGGAACTTGAGT+GGG | - | chr1_1:23897145-23897164 | Msa0014890:intron | 35.0% | |
| GGAAAATTGAAAAGACGCAT+TGG | - | chr1_1:23897530-23897549 | Msa0014890:intron | 35.0% | |
| AAATACCTTTCACCAGGAAT+AGG | + | chr1_1:23897608-23897627 | None:intergenic | 35.0% | |
| AACAGTAAATACCTTTCACC+AGG | + | chr1_1:23897614-23897633 | None:intergenic | 35.0% | |
| ACTTGTTCACCAAGAAGTTA+TGG | + | chr1_1:23897637-23897656 | None:intergenic | 35.0% | |
| !! | ATCATTGATTTGTGTGCTCT+TGG | - | chr1_1:23897707-23897726 | Msa0014890:intron | 35.0% |
| ! | AGGAAAAGTATGAGAAAGCA+AGG | - | chr1_1:23897858-23897877 | Msa0014890:intron | 35.0% |
| ! | GGAAAAGTATGAGAAAGCAA+GGG | - | chr1_1:23897859-23897878 | Msa0014890:intron | 35.0% |
| !! | TTTGATGAAGTTCAGGTTGC+CGG | + | chr1_1:23892233-23892252 | None:intergenic | 40.0% |
| GATAGAGATGAAGATGAGTG+AGG | + | chr1_1:23892340-23892359 | None:intergenic | 40.0% | |
| TCCCCATAGGATGAATTGTT+CGG | - | chr1_1:23892765-23892784 | Msa0014890:intron | 40.0% | |
| TCCGAACAATTCATCCTATG+GGG | + | chr1_1:23892769-23892788 | None:intergenic | 40.0% | |
| GAAAACCCTAGTTCGATTCT+GGG | - | chr1_1:23892787-23892806 | Msa0014890:intron | 40.0% | |
| ATTCTGGGTGGAACAATTCT+TGG | - | chr1_1:23892802-23892821 | Msa0014890:intron | 40.0% | |
| CCCAAATGCTAAAATGCCTA+AGG | + | chr1_1:23893045-23893064 | None:intergenic | 40.0% | |
| AACAACACCACCAAATGCTA+GGG | + | chr1_1:23893385-23893404 | None:intergenic | 40.0% | |
| !! | TTTGGTGGTGTTGTTGATTG+TGG | - | chr1_1:23893390-23893409 | Msa0014890:CDS | 40.0% |
| ! | GTGTTGTTGATTGTGGATAG+TGG | - | chr1_1:23893397-23893416 | Msa0014890:CDS | 40.0% |
| !! | TTGTGGATAGTGGAAAACAG+AGG | - | chr1_1:23893407-23893426 | Msa0014890:CDS | 40.0% |
| CCGAATCAGACGAAATGTTA+GGG | + | chr1_1:23893480-23893499 | None:intergenic | 40.0% | |
| CCCTAACATTTCGTCTGATT+CGG | - | chr1_1:23893477-23893496 | Msa0014890:intron | 40.0% | |
| ACCGAATCAGACGAAATGTT+AGG | + | chr1_1:23893481-23893500 | None:intergenic | 40.0% | |
| !!! | TGGGTGTTCTTTTTGGTTCA+TGG | - | chr1_1:23893540-23893559 | Msa0014890:intron | 40.0% |
| !!! | GGGTGTTCTTTTTGGTTCAT+GGG | - | chr1_1:23893541-23893560 | Msa0014890:intron | 40.0% |
| !!! | GGTGTTCTTTTTGGTTCATG+GGG | - | chr1_1:23893542-23893561 | Msa0014890:intron | 40.0% |
| CCACAGCTATTTGTCAACTA+TGG | + | chr1_1:23893830-23893849 | None:intergenic | 40.0% | |
| CCATAGTTGACAAATAGCTG+TGG | - | chr1_1:23893827-23893846 | Msa0014890:intron | 40.0% | |
| TAGTTGACAAATAGCTGTGG+AGG | - | chr1_1:23893830-23893849 | Msa0014890:intron | 40.0% | |
| TCAACTTCTCATAGTCACGA+TGG | - | chr1_1:23893963-23893982 | Msa0014890:intron | 40.0% | |
| !! | CAAAGTTCTAGCTCACAGAA+CGG | - | chr1_1:23894029-23894048 | Msa0014890:intron | 40.0% |
| TATACCCACAGAAGATTCCA+CGG | + | chr1_1:23894090-23894109 | None:intergenic | 40.0% | |
| TCCCGTTCATGTTCATGTTA+AGG | - | chr1_1:23894220-23894239 | Msa0014890:intron | 40.0% | |
| CGTTCATGTTCATGTTAAGG+AGG | - | chr1_1:23894223-23894242 | Msa0014890:intron | 40.0% | |
| ATCTTCATCCTAGCACTCAA+TGG | + | chr1_1:23894317-23894336 | None:intergenic | 40.0% | |
| AGGATGAAGATGAACAGTGA+CGG | - | chr1_1:23894326-23894345 | Msa0014890:intron | 40.0% | |
| TGAGATTTCTTGACGACAAC+AGG | + | chr1_1:23894368-23894387 | None:intergenic | 40.0% | |
| ATATTCCTTTGTCAGCAAGG+CGG | - | chr1_1:23894450-23894469 | Msa0014890:intron | 40.0% | |
| GTTCAGAAAGGACAGCAATA+TGG | - | chr1_1:23894548-23894567 | Msa0014890:CDS | 40.0% | |
| ! | GAGGAATCAGTCTTATCTAG+TGG | + | chr1_1:23894626-23894645 | None:intergenic | 40.0% |
| TAGCATTAATTGACGGAGCT+GGG | + | chr1_1:23894682-23894701 | None:intergenic | 40.0% | |
| TTAGCATTAATTGACGGAGC+TGG | + | chr1_1:23894683-23894702 | None:intergenic | 40.0% | |
| ! | TGGACTACTTTGGTTCACAA+TGG | - | chr1_1:23894965-23894984 | Msa0014890:intron | 40.0% |
| ! | ATAGAGCATCTTTACCCCAT+GGG | + | chr1_1:23895017-23895036 | None:intergenic | 40.0% |
| ! | TATAGAGCATCTTTACCCCA+TGG | + | chr1_1:23895018-23895037 | None:intergenic | 40.0% |
| TGGGGTAAAGATGCTCTATA+AGG | - | chr1_1:23895018-23895037 | Msa0014890:intron | 40.0% | |
| GGGGTAAAGATGCTCTATAA+GGG | - | chr1_1:23895019-23895038 | Msa0014890:intron | 40.0% | |
| GGGTAAAGATGCTCTATAAG+GGG | - | chr1_1:23895020-23895039 | Msa0014890:intron | 40.0% | |
| GTTCATGATGTCCAGTCATA+TGG | - | chr1_1:23895262-23895281 | Msa0014890:CDS | 40.0% | |
| !!! | CCTTACATGTTGGTTTTGTG+GGG | - | chr1_1:23895374-23895393 | Msa0014890:CDS | 40.0% |
| ! | AGGAAAACTTTTGGACTGAC+TGG | - | chr1_1:23895603-23895622 | Msa0014890:CDS | 40.0% |
| ! | AAACTTTTGGACTGACTGGA+AGG | - | chr1_1:23895607-23895626 | Msa0014890:CDS | 40.0% |
| ACTGACTGGAAGGTGATATT+GGG | - | chr1_1:23895617-23895636 | Msa0014890:CDS | 40.0% | |
| AGCCATGTAAAACGTGTGAT+AGG | - | chr1_1:23895957-23895976 | Msa0014890:CDS | 40.0% | |
| ! | TGCCTATCACACGTTTTACA+TGG | + | chr1_1:23895962-23895981 | None:intergenic | 40.0% |
| ! | CAATATCGTTTTCCCACTTC+TGG | - | chr1_1:23896130-23896149 | Msa0014890:CDS | 40.0% |
| GAAAGATTGTCTTCCAGAAG+TGG | + | chr1_1:23896146-23896165 | None:intergenic | 40.0% | |
| AACCTTCCAGAACAGACAAA+GGG | - | chr1_1:23896307-23896326 | Msa0014890:CDS | 40.0% | |
| GACTGGTAAAATTGCAAGCT+TGG | + | chr1_1:23896427-23896446 | None:intergenic | 40.0% | |
| CAACTCAGAACTCGTTATGT+TGG | + | chr1_1:23896450-23896469 | None:intergenic | 40.0% | |
| !! | CAACATAACGAGTTCTGAGT+TGG | - | chr1_1:23896448-23896467 | Msa0014890:intron | 40.0% |
| ! | AAGCTTCAAAAGGGAGTATG+AGG | + | chr1_1:23896665-23896684 | None:intergenic | 40.0% |
| ! | GGATTTGTTCCGGTTAATAC+AGG | - | chr1_1:23896702-23896721 | Msa0014890:intron | 40.0% |
| GGAGGAGAAAATGAAACAAG+AGG | - | chr1_1:23896851-23896870 | Msa0014890:intron | 40.0% | |
| ! | TACATGTGGGCTATTGTTGA+TGG | - | chr1_1:23896879-23896898 | Msa0014890:intron | 40.0% |
| CAAGTTTGGGCAAAGAAAGA+GGG | + | chr1_1:23896932-23896951 | None:intergenic | 40.0% | |
| ACAAGTTTGGGCAAAGAAAG+AGG | + | chr1_1:23896933-23896952 | None:intergenic | 40.0% | |
| TTGACAATTCCTTCTTGGGA+AGG | - | chr1_1:23897042-23897061 | Msa0014890:intron | 40.0% | |
| TGACAATTCCTTCTTGGGAA+GGG | - | chr1_1:23897043-23897062 | Msa0014890:intron | 40.0% | |
| CTGATCCAACCAAAACAACA+GGG | + | chr1_1:23897118-23897137 | None:intergenic | 40.0% | |
| GTGCATTAATGGAACTTGAG+TGG | - | chr1_1:23897144-23897163 | Msa0014890:intron | 40.0% | |
| !!! | AATTTTAGAGCTGAACCACC+AGG | - | chr1_1:23897319-23897338 | Msa0014890:intron | 40.0% |
| GGAATAGGACATTCAGGAAT+TGG | + | chr1_1:23897593-23897612 | None:intergenic | 40.0% | |
| ATTCCTGAATGTCCTATTCC+TGG | - | chr1_1:23897593-23897612 | Msa0014890:intron | 40.0% | |
| AATGTCCTATTCCTGGTGAA+AGG | - | chr1_1:23897600-23897619 | Msa0014890:intron | 40.0% | |
| AATTCTGCACCCAGATGTTA+AGG | + | chr1_1:23897976-23897995 | None:intergenic | 40.0% | |
| AGAACGAGGTTGAGATTGTG+TGG | + | chr1_1:23892314-23892333 | None:intergenic | 45.0% | |
| TTGGTTAATGAGCTCCCCAT+AGG | - | chr1_1:23892752-23892771 | Msa0014890:intron | 45.0% | |
| GGAAAACCCTAGTTCGATTC+TGG | - | chr1_1:23892786-23892805 | Msa0014890:intron | 45.0% | |
| TTCCACCCAGAATCGAACTA+GGG | + | chr1_1:23892795-23892814 | None:intergenic | 45.0% | |
| TGATAATCCAGAGTTCGGAC+AGG | + | chr1_1:23892845-23892864 | None:intergenic | 45.0% | |
| TGTCCGAACTCTGGATTATC+AGG | - | chr1_1:23892844-23892863 | Msa0014890:intron | 45.0% | |
| GTCCGAACTCTGGATTATCA+GGG | - | chr1_1:23892845-23892864 | Msa0014890:intron | 45.0% | |
| TCCGAACTCTGGATTATCAG+GGG | - | chr1_1:23892846-23892865 | Msa0014890:intron | 45.0% | |
| !! | TTGCTGGCTGATGCACTTTT+TGG | - | chr1_1:23892980-23892999 | Msa0014890:intron | 45.0% |
| TTGTAAGCCCTAGCATTTGG+TGG | - | chr1_1:23893375-23893394 | Msa0014890:CDS | 45.0% | |
| CAACAACACCACCAAATGCT+AGG | + | chr1_1:23893386-23893405 | None:intergenic | 45.0% | |
| TAATCACAACATGCTCTGCG+TGG | + | chr1_1:23893793-23893812 | None:intergenic | 45.0% | |
| CTTCTCATAGTCACGATGGA+CGG | - | chr1_1:23893967-23893986 | Msa0014890:intron | 45.0% | |
| GAACTTTGGCCATTTGCAGA+AGG | + | chr1_1:23894017-23894036 | None:intergenic | 45.0% | |
| CGTTCTGTGAGCTAGAACTT+TGG | + | chr1_1:23894031-23894050 | None:intergenic | 45.0% | |
| TGTCTCAACCTCAACCTCTA+AGG | - | chr1_1:23894058-23894077 | Msa0014890:intron | 45.0% | |
| TGAAGAATCCGAAGACGAGA+TGG | - | chr1_1:23894283-23894302 | Msa0014890:intron | 45.0% | |
| CAGCAATATGGCTCCAATGT+TGG | - | chr1_1:23894560-23894579 | Msa0014890:CDS | 45.0% | |
| CTCTTAACAGGCAGTGTAGA+CGG | + | chr1_1:23894602-23894621 | None:intergenic | 45.0% | |
| ATCGGTGAAATCTGAACCGA+AGG | - | chr1_1:23894709-23894728 | Msa0014890:intron | 45.0% | |
| GAAATCTGAACCGAAGGTTG+CGG | - | chr1_1:23894715-23894734 | Msa0014890:intron | 45.0% | |
| ACTAAACTTCCTCCAAGCTC+CGG | - | chr1_1:23894926-23894945 | Msa0014890:intron | 45.0% | |
| !!! | CCATTTTTTCTGCCCATCAC+CGG | + | chr1_1:23894948-23894967 | None:intergenic | 45.0% |
| ! | TAGAGCATCTTTACCCCATG+GGG | + | chr1_1:23895016-23895035 | None:intergenic | 45.0% |
| ATCGTACCTCCTCTTGTTCA+GGG | + | chr1_1:23895063-23895082 | None:intergenic | 45.0% | |
| AATCGTACCTCCTCTTGTTC+AGG | + | chr1_1:23895064-23895083 | None:intergenic | 45.0% | |
| !! | CACTGTTTTGGGTGACTGTT+TGG | - | chr1_1:23895104-23895123 | Msa0014890:intron | 45.0% |
| GGACATCATGAACGTGATTC+TGG | + | chr1_1:23895255-23895274 | None:intergenic | 45.0% | |
| ! | ACATCTAATCTGAGACCCTC+GGG | + | chr1_1:23895310-23895329 | None:intergenic | 45.0% |
| ! | CACATCTAATCTGAGACCCT+CGG | + | chr1_1:23895311-23895330 | None:intergenic | 45.0% |
| CCCCACAAAACCAACATGTA+AGG | + | chr1_1:23895377-23895396 | None:intergenic | 45.0% | |
| GCAGGTTGCCACATTATATG+CGG | - | chr1_1:23895541-23895560 | Msa0014890:CDS | 45.0% | |
| CCACATTATATGCGGTCATG+CGG | - | chr1_1:23895549-23895568 | Msa0014890:CDS | 45.0% | |
| CACATTATATGCGGTCATGC+GGG | - | chr1_1:23895550-23895569 | Msa0014890:CDS | 45.0% | |
| GACTGACTGGAAGGTGATAT+TGG | - | chr1_1:23895616-23895635 | Msa0014890:CDS | 45.0% | |
| CAACCTTCCAGAACAGACAA+AGG | - | chr1_1:23896306-23896325 | Msa0014890:CDS | 45.0% | |
| ! | AACCCTTTGTCTGTTCTGGA+AGG | + | chr1_1:23896312-23896331 | None:intergenic | 45.0% |
| ATCATACTCCAGCGCAAACT+CGG | + | chr1_1:23896353-23896372 | None:intergenic | 45.0% | |
| AGTTTGCGCTGGAGTATGAT+TGG | - | chr1_1:23896353-23896372 | Msa0014890:CDS | 45.0% | |
| CGCTGGAGTATGATTGGATT+TGG | - | chr1_1:23896359-23896378 | Msa0014890:CDS | 45.0% | |
| !! | ATTGGATTTGGTGTCTCAGC+AGG | - | chr1_1:23896371-23896390 | Msa0014890:CDS | 45.0% |
| !! | TTGGATTTGGTGTCTCAGCA+GGG | - | chr1_1:23896372-23896391 | Msa0014890:CDS | 45.0% |
| AGAACTCGTTATGTTGGGAC+TGG | + | chr1_1:23896444-23896463 | None:intergenic | 45.0% | |
| TCAGGAGAAAAAGGCCCTAA+AGG | - | chr1_1:23896830-23896849 | Msa0014890:intron | 45.0% | |
| GCTGATCCAACCAAAACAAC+AGG | + | chr1_1:23897119-23897138 | None:intergenic | 45.0% | |
| TCACCAGGAATAGGACATTC+AGG | + | chr1_1:23897599-23897618 | None:intergenic | 45.0% | |
| CAGTTACTTGGTTGGCGTAT+TGG | - | chr1_1:23897759-23897778 | Msa0014890:intron | 45.0% | |
| ! | TTCTGGGAGCTAGTAGTTCT+TGG | - | chr1_1:23897819-23897838 | Msa0014890:intron | 45.0% |
| GGAGCTAGTAGTTCTTGGAA+GGG | - | chr1_1:23897824-23897843 | Msa0014890:intron | 45.0% | |
| GAGCTAGTAGTTCTTGGAAG+GGG | - | chr1_1:23897825-23897844 | Msa0014890:intron | 45.0% | |
| GAGTAGCTGAAGAACAGGTG+TGG | + | chr1_1:23892268-23892287 | None:intergenic | 50.0% | |
| TTGGGGAGTAGCTGAAGAAC+AGG | + | chr1_1:23892273-23892292 | None:intergenic | 50.0% | |
| CGAGGTTGAGATTGTGTGGT+CGG | + | chr1_1:23892310-23892329 | None:intergenic | 50.0% | |
| GATGAGTGAGGAAGAGAACG+AGG | + | chr1_1:23892328-23892347 | None:intergenic | 50.0% | |
| AACCCTAGTTCGATTCTGGG+TGG | - | chr1_1:23892790-23892809 | Msa0014890:intron | 50.0% | |
| GTTCCACCCAGAATCGAACT+AGG | + | chr1_1:23892796-23892815 | None:intergenic | 50.0% | |
| TGGGTGGAACAATTCTTGGC+CGG | - | chr1_1:23892806-23892825 | Msa0014890:intron | 50.0% | |
| CTTATCTCCTGTCCGAACTC+TGG | - | chr1_1:23892835-23892854 | Msa0014890:intron | 50.0% | |
| CCCCCTGATAATCCAGAGTT+CGG | + | chr1_1:23892850-23892869 | None:intergenic | 50.0% | |
| CCGAACTCTGGATTATCAGG+GGG | - | chr1_1:23892847-23892866 | Msa0014890:intron | 50.0% | |
| ACTCTGGATTATCAGGGGGA+AGG | - | chr1_1:23892851-23892870 | Msa0014890:intron | 50.0% | |
| CTCTGGATTATCAGGGGGAA+GGG | - | chr1_1:23892852-23892871 | Msa0014890:intron | 50.0% | |
| CAAATAGCTGTGGAGGCTTG+TGG | - | chr1_1:23893837-23893856 | Msa0014890:intron | 50.0% | |
| ! | ATTTGCAGAAGGCACGTCAG+GGG | + | chr1_1:23894006-23894025 | None:intergenic | 50.0% |
| ! | CATTTGCAGAAGGCACGTCA+GGG | + | chr1_1:23894007-23894026 | None:intergenic | 50.0% |
| !! | TTCTAGCTCACAGAACGGCA+AGG | - | chr1_1:23894034-23894053 | Msa0014890:intron | 50.0% |
| ATCTGCCGTGGAATCTTCTG+TGG | - | chr1_1:23894082-23894101 | Msa0014890:intron | 50.0% | |
| TCTGCCGTGGAATCTTCTGT+GGG | - | chr1_1:23894083-23894102 | Msa0014890:intron | 50.0% | |
| !! | CCGGTGATGGGCAGAAAAAA+TGG | - | chr1_1:23894945-23894964 | Msa0014890:intron | 50.0% |
| TTTACCCCATGGGGCTTGTA+AGG | + | chr1_1:23895007-23895026 | None:intergenic | 50.0% | |
| GATGCTCTATAAGGGGAAGC+CGG | - | chr1_1:23895027-23895046 | Msa0014890:intron | 50.0% | |
| TGTTCAGGGGTCAAAGTCAC+CGG | + | chr1_1:23895049-23895068 | None:intergenic | 50.0% | |
| GACTTTGACCCCTGAACAAG+AGG | - | chr1_1:23895051-23895070 | Msa0014890:intron | 50.0% | |
| TTTGACCCCTGAACAAGAGG+AGG | - | chr1_1:23895054-23895073 | Msa0014890:intron | 50.0% | |
| TCGTACCTCCTCTTGTTCAG+GGG | + | chr1_1:23895062-23895081 | None:intergenic | 50.0% | |
| CCGCATGACCGCATATAATG+TGG | + | chr1_1:23895552-23895571 | None:intergenic | 50.0% | |
| CAGGACAGGCAAGTTCTTTC+GGG | + | chr1_1:23896168-23896187 | None:intergenic | 50.0% | |
| GCAGGACAGGCAAGTTCTTT+CGG | + | chr1_1:23896169-23896188 | None:intergenic | 50.0% | |
| ACTTCACTTGAGTGCCACCT+GGG | + | chr1_1:23896197-23896216 | None:intergenic | 50.0% | |
| AACTTCACTTGAGTGCCACC+TGG | + | chr1_1:23896198-23896217 | None:intergenic | 50.0% | |
| GCGACTGCAAACTGAATGCT+TGG | + | chr1_1:23896228-23896247 | None:intergenic | 50.0% | |
| !!! | GGTTTTTTCCGAGTTTGCGC+TGG | - | chr1_1:23896342-23896361 | Msa0014890:CDS | 50.0% |
| !! | ACGAGTTCTGAGTTGGGTTC+AGG | - | chr1_1:23896455-23896474 | Msa0014890:intron | 50.0% |
| GGAGAAAAAGGCCCTAAAGG+AGG | - | chr1_1:23896833-23896852 | Msa0014890:intron | 50.0% | |
| AGCGGTTCACAGCACAATGT+GGG | - | chr1_1:23896974-23896993 | Msa0014890:intron | 50.0% | |
| TCTCTAGTCCCTTCCCAAGA+AGG | + | chr1_1:23897054-23897073 | None:intergenic | 50.0% | |
| ATTTGTGTGCTCTTGGCAGC+TGG | - | chr1_1:23897714-23897733 | Msa0014890:intron | 50.0% | |
| GGGAGCTAGTAGTTCTTGGA+AGG | - | chr1_1:23897823-23897842 | Msa0014890:intron | 50.0% | |
| TTGGAAGGGGCAAAGTGACA+AGG | - | chr1_1:23897838-23897857 | Msa0014890:intron | 50.0% | |
| !! | TGAGAAAGCAAGGGCGTTGA+AGG | - | chr1_1:23897868-23897887 | Msa0014890:intron | 50.0% |
| GCTGAAGAACAGGTGTGGCA+CGG | + | chr1_1:23892263-23892282 | None:intergenic | 55.0% | |
| GAGATTGTGTGGTCGGAGGA+GGG | + | chr1_1:23892303-23892322 | None:intergenic | 55.0% | |
| TGAGATTGTGTGGTCGGAGG+AGG | + | chr1_1:23892304-23892323 | None:intergenic | 55.0% | |
| GGTTGAGATTGTGTGGTCGG+AGG | + | chr1_1:23892307-23892326 | None:intergenic | 55.0% | |
| ! | CCATTTGCAGAAGGCACGTC+AGG | + | chr1_1:23894008-23894027 | None:intergenic | 55.0% |
| CCTGACGTGCCTTCTGCAAA+TGG | - | chr1_1:23894005-23894024 | Msa0014890:intron | 55.0% | |
| GGCAGATGCCTTAGAGGTTG+AGG | + | chr1_1:23894069-23894088 | None:intergenic | 55.0% | |
| !! | AACCTCTAAGGCATCTGCCG+TGG | - | chr1_1:23894070-23894089 | Msa0014890:intron | 55.0% |
| TTCCACGGCAGATGCCTTAG+AGG | + | chr1_1:23894075-23894094 | None:intergenic | 55.0% | |
| ACCTATGTGAGGTCCCCTTC+AGG | - | chr1_1:23894140-23894159 | Msa0014890:intron | 55.0% | |
| TCCTGAAGGGGACCTCACAT+AGG | + | chr1_1:23894144-23894163 | None:intergenic | 55.0% | |
| TGTAGCCGCCTTGCTGACAA+AGG | + | chr1_1:23894458-23894477 | None:intergenic | 55.0% | |
| ATCTGAACCGAAGGTTGCGG+AGG | - | chr1_1:23894718-23894737 | Msa0014890:intron | 55.0% | |
| TCATCCACCTCCGCAACCTT+CGG | + | chr1_1:23894728-23894747 | None:intergenic | 55.0% | |
| TTCCTCCAAGCTCCGGTGAT+GGG | - | chr1_1:23894933-23894952 | Msa0014890:intron | 55.0% | |
| CATGGGGCTTGTAAGGAGGT+GGG | + | chr1_1:23895000-23895019 | None:intergenic | 55.0% | |
| CACCTCCTTACAAGCCCCAT+GGG | - | chr1_1:23894999-23895018 | Msa0014890:intron | 55.0% | |
| ACCTCCTTACAAGCCCCATG+GGG | - | chr1_1:23895000-23895019 | Msa0014890:intron | 55.0% | |
| TGTCCAGTCATATGGGCGTG+AGG | - | chr1_1:23895270-23895289 | Msa0014890:CDS | 55.0% | |
| GTCCAGTCATATGGGCGTGA+GGG | - | chr1_1:23895271-23895290 | Msa0014890:CDS | 55.0% | |
| CAGCGGTTCACAGCACAATG+TGG | - | chr1_1:23896973-23896992 | Msa0014890:intron | 55.0% | |
| TCGGAGGAGGGAAGGGAGTT+GGG | + | chr1_1:23892291-23892310 | None:intergenic | 60.0% | |
| TGTGTGGTCGGAGGAGGGAA+GGG | + | chr1_1:23892298-23892317 | None:intergenic | 60.0% | |
| TTGTGTGGTCGGAGGAGGGA+AGG | + | chr1_1:23892299-23892318 | None:intergenic | 60.0% | |
| TGAACCGAAGGTTGCGGAGG+TGG | - | chr1_1:23894721-23894740 | Msa0014890:intron | 60.0% | |
| CTTCCTCCAAGCTCCGGTGA+TGG | - | chr1_1:23894932-23894951 | Msa0014890:intron | 60.0% | |
| TTCTGCCCATCACCGGAGCT+TGG | + | chr1_1:23894941-23894960 | None:intergenic | 60.0% | |
| CCATGGGGCTTGTAAGGAGG+TGG | + | chr1_1:23895001-23895020 | None:intergenic | 60.0% | |
| CCACCTCCTTACAAGCCCCA+TGG | - | chr1_1:23894998-23895017 | Msa0014890:intron | 60.0% | |
| ACCCCATGGGGCTTGTAAGG+AGG | + | chr1_1:23895004-23895023 | None:intergenic | 60.0% | |
| CTCCCTCACGCCCATATGAC+TGG | + | chr1_1:23895276-23895295 | None:intergenic | 60.0% | |
| CAGTCATATGGGCGTGAGGG+AGG | - | chr1_1:23895274-23895293 | Msa0014890:CDS | 60.0% | |
| TCACTTGAGTGCCACCTGGG+AGG | + | chr1_1:23896194-23896213 | None:intergenic | 60.0% | |
| GAACCACCAGGACTGTTCCG+TGG | - | chr1_1:23897331-23897350 | Msa0014890:intron | 60.0% | |
| TGGGATGCTCTCCACGTCCA+CGG | + | chr1_1:23897351-23897370 | None:intergenic | 60.0% | |
| !! | TGGACGTGGAGAGCATCCCA+AGG | - | chr1_1:23897351-23897370 | Msa0014890:intron | 60.0% |
| CGGAGGAGGGAAGGGAGTTG+GGG | + | chr1_1:23892290-23892309 | None:intergenic | 65.0% | |
| GTCGGAGGAGGGAAGGGAGT+TGG | + | chr1_1:23892292-23892311 | None:intergenic | 65.0% | |
| TGCCCATCACCGGAGCTTGG+AGG | + | chr1_1:23894938-23894957 | None:intergenic | 65.0% | |
| ! | GGCGTGAGGGAGGTGTGTTG+AGG | - | chr1_1:23895284-23895303 | Msa0014890:CDS | 65.0% |
| ! | GGAGGTGTGTTGAGGCCCGA+GGG | - | chr1_1:23895292-23895311 | Msa0014890:CDS | 65.0% |
| TGCCTGTCCTGCTTCCTCCC+AGG | - | chr1_1:23896177-23896196 | Msa0014890:CDS | 65.0% | |
| CACCTGGGAGGAAGCAGGAC+AGG | + | chr1_1:23896182-23896201 | None:intergenic | 65.0% | |
| CTGTCCTGCTTCCTCCCAGG+TGG | - | chr1_1:23896180-23896199 | Msa0014890:CDS | 65.0% | |
| AGTGCCACCTGGGAGGAAGC+AGG | + | chr1_1:23896187-23896206 | None:intergenic | 65.0% | |
| CGTCCACGGAACAGTCCTGG+TGG | + | chr1_1:23897337-23897356 | None:intergenic | 65.0% | |
| CCACGTCCACGGAACAGTCC+TGG | + | chr1_1:23897340-23897359 | None:intergenic | 65.0% | |
| CCAGGACTGTTCCGTGGACG+TGG | - | chr1_1:23897337-23897356 | Msa0014890:intron | 65.0% | |
| ! | GGGAGGTGTGTTGAGGCCCG+AGG | - | chr1_1:23895291-23895310 | Msa0014890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 23892207 | 23898054 | 23892207 | ID=Msa0014890;Name=Msa0014890 |
| chr1_1 | mRNA | 23892207 | 23898054 | 23892207 | ID=Msa0014890-mRNA-1;Parent=Msa0014890;Name=Msa0014890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=254|1|1|1|0.71|0.62|8|0|619 |
| chr1_1 | exon | 23892207 | 23892269 | 23892207 | ID=Msa0014890-mRNA-1:exon:8310;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23892372 | 23892528 | 23892372 | ID=Msa0014890-mRNA-1:exon:8309;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23892640 | 23892734 | 23892640 | ID=Msa0014890-mRNA-1:exon:8308;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23892889 | 23892948 | 23892889 | ID=Msa0014890-mRNA-1:exon:8307;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23893347 | 23893427 | 23893347 | ID=Msa0014890-mRNA-1:exon:8306;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23894522 | 23894716 | 23894522 | ID=Msa0014890-mRNA-1:exon:8305;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23895186 | 23896463 | 23895186 | ID=Msa0014890-mRNA-1:exon:8304;Parent=Msa0014890-mRNA-1 |
| chr1_1 | exon | 23897873 | 23898054 | 23897873 | ID=Msa0014890-mRNA-1:exon:8303;Parent=Msa0014890-mRNA-1 |
| chr1_1 | five_prime_UTR | 23897873 | 23898054 | 23897873 | ID=Msa0014890-mRNA-1:five_prime_utr;Parent=Msa0014890-mRNA-1 |
| chr1_1 | five_prime_UTR | 23896392 | 23896463 | 23896392 | ID=Msa0014890-mRNA-1:five_prime_utr;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23895186 | 23896391 | 23895186 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23894522 | 23894716 | 23894522 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23893347 | 23893427 | 23893347 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23892889 | 23892948 | 23892889 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23892640 | 23892734 | 23892640 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23892372 | 23892528 | 23892372 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| chr1_1 | CDS | 23892207 | 23892269 | 23892207 | ID=Msa0014890-mRNA-1:cds;Parent=Msa0014890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
