Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014950 | sp|O80585|MTHR2_ARATH | 81.008 | 595 | 112 | 1 | 1 | 595 | 1 | 594 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014950 | Msa0598150 | 0.801277 | 9.716007e-49 | -8.615850e-47 |
| Msa0014950 | Msa1028350 | 0.817870 | 2.635052e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014950 | MtrunA17_Chr1g0165631 | 98.487 | 595 | 9 | 0 | 1 | 595 | 1 | 595 | 0.0 | 1228 |
| Msa0014950 | MtrunA17_Chr8g0348331 | 91.781 | 73 | 6 | 0 | 464 | 536 | 2 | 74 | 1.98e-41 | 146 |
| Msa0014950 | MtrunA17_Chr5g0395081 | 92.000 | 50 | 4 | 0 | 88 | 137 | 1 | 50 | 1.12e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014950 | AT2G44160.1 | 81.008 | 595 | 112 | 1 | 1 | 595 | 1 | 594 | 0.0 | 1038 |
| Msa0014950 | AT3G59970.3 | 79.258 | 593 | 122 | 1 | 1 | 593 | 1 | 592 | 0.0 | 1018 |
| Msa0014950 | AT3G59970.2 | 80.702 | 399 | 76 | 1 | 1 | 399 | 1 | 398 | 0.0 | 703 |
| Msa0014950 | AT3G59970.1 | 80.856 | 397 | 75 | 1 | 1 | 397 | 1 | 396 | 0.0 | 702 |
Find 189 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTAAGGATCTAGAAATTT+TGG | 0.181244 | 1_1:+23963374 | None:intergenic |
| ACAGAACTGGCTTTGTTTAA+AGG | 0.186817 | 1_1:+23961517 | None:intergenic |
| AAATCCCTTGTAATTGTTAA+TGG | 0.204264 | 1_1:+23964236 | None:intergenic |
| AATTAATTGTTTGGAATATA+TGG | 0.213145 | 1_1:-23961408 | Msa0014950:three_prime_UTR |
| TATCAGTGTCATAAAATAAC+TGG | 0.252371 | 1_1:+23964328 | None:intergenic |
| TTTCTTTCCTTTGAATTTCA+TGG | 0.264054 | 1_1:-23961304 | Msa0014950:three_prime_UTR |
| TGGAAGTAGAAGAAGAAAAT+TGG | 0.269491 | 1_1:-23961240 | Msa0014950:three_prime_UTR |
| GGTTGTATTATTTCCTTAGC+TGG | 0.269818 | 1_1:+23962289 | None:intergenic |
| AATGAAAATACTACTTTGTT+TGG | 0.286381 | 1_1:+23966299 | None:intergenic |
| GAAGAAGCTGTCAAGGCTTA+TGG | 0.289386 | 1_1:-23963925 | Msa0014950:CDS |
| CAACATATCAGAAGCAAATA+TGG | 0.301751 | 1_1:-23964919 | Msa0014950:CDS |
| CAGAATGTGCTTGCGCTTAG+AGG | 0.308530 | 1_1:-23966023 | Msa0014950:CDS |
| GCATCTTTACACGCTAAATA+TGG | 0.309138 | 1_1:-23963845 | Msa0014950:CDS |
| TACTTTGGCATTACCATTGC+TGG | 0.309364 | 1_1:-23964892 | Msa0014950:CDS |
| TAGGACAAGTTATCCCAATT+TGG | 0.313158 | 1_1:+23964277 | None:intergenic |
| AATCCCTTGTAATTGTTAAT+GGG | 0.320226 | 1_1:+23964237 | None:intergenic |
| AAGATGTTCGCCCAATCTTT+TGG | 0.327806 | 1_1:-23963317 | Msa0014950:intron |
| TTCAAACATCTCGTTGATAG+AGG | 0.331536 | 1_1:+23961160 | None:intergenic |
| TATTAACAGCCATGTAAGTT+AGG | 0.336076 | 1_1:+23962377 | None:intergenic |
| GGTTGGCCGCAGCTACTTCT+TGG | 0.343427 | 1_1:-23961627 | Msa0014950:CDS |
| GTGAATGATTGTCGCCAAAT+TGG | 0.344779 | 1_1:-23964291 | Msa0014950:CDS |
| CATGGGCGTTGGAGTGATTC+CGG | 0.346482 | 1_1:-23963143 | Msa0014950:CDS |
| AACCTCTTCAACCAATTTCC+TGG | 0.355284 | 1_1:+23962168 | None:intergenic |
| TGGTGCATTAACTGACTATC+AGG | 0.361183 | 1_1:-23963108 | Msa0014950:intron |
| TTGTTAATGGGCATAATTCC+AGG | 0.367565 | 1_1:+23964249 | None:intergenic |
| ATCTGCATTGGCGATTCTAA+TGG | 0.369146 | 1_1:-23963818 | Msa0014950:intron |
| ACAATAGTATACCAAAAGAT+TGG | 0.371831 | 1_1:+23963306 | None:intergenic |
| CTAGATACCTGCTGAGATAA+TGG | 0.383571 | 1_1:-23963974 | Msa0014950:intron |
| ATTACCATTGCTGGTTATCC+AGG | 0.388381 | 1_1:-23964883 | Msa0014950:intron |
| GGCTGATGCATCCAGGAAAT+TGG | 0.392154 | 1_1:-23962179 | Msa0014950:CDS |
| GCTTCTTCATTGTCCTTGAT+AGG | 0.392985 | 1_1:+23963940 | None:intergenic |
| TTGAGACGATTAAGAGTAAT+GGG | 0.393433 | 1_1:-23966049 | Msa0014950:CDS |
| TTCAAAGGAATGAGCGTCAA+TGG | 0.408191 | 1_1:+23961327 | None:intergenic |
| TGCACCATATGACGGGTTAC+CGG | 0.408639 | 1_1:+23963124 | None:intergenic |
| AGTTGGTGGCACTGCCTTAC+CGG | 0.410408 | 1_1:+23966774 | None:intergenic |
| GGAGTGTCAAATTAATTGTT+TGG | 0.415594 | 1_1:-23961417 | Msa0014950:three_prime_UTR |
| GATAAATCCACAATAAGTTC+TGG | 0.415673 | 1_1:+23961128 | None:intergenic |
| CCTTTGTGTTGATCTTCTCC+AGG | 0.421941 | 1_1:+23962736 | None:intergenic |
| ATAGCCAGCCCGCAGTCAAT+GGG | 0.426885 | 1_1:-23962698 | Msa0014950:CDS |
| TTACTAGGCTGGGGTGGACC+TGG | 0.427064 | 1_1:-23962490 | Msa0014950:intron |
| TTCCTGGATGCATCAGCCTC+AGG | 0.428234 | 1_1:+23962184 | None:intergenic |
| TACATGGCTGTTAATAAAGA+AGG | 0.428769 | 1_1:-23962370 | Msa0014950:CDS |
| AATAGTAGTATTATAGTAAC+CGG | 0.430676 | 1_1:-23966793 | Msa0014950:five_prime_UTR |
| TAGATTGTCCACTCCATCTT+CGG | 0.433794 | 1_1:+23966256 | None:intergenic |
| TTGAAATTTGGTCAAGAGGA+TGG | 0.436894 | 1_1:-23962219 | Msa0014950:CDS |
| TTTCTCTTCAGAGGCACATC+CGG | 0.437720 | 1_1:-23964760 | Msa0014950:intron |
| GTTTGCGTGTGCGCGTGATT+TGG | 0.437836 | 1_1:-23965955 | Msa0014950:intron |
| CAAGAAGCTTATTGAAGAAT+GGG | 0.442939 | 1_1:-23962975 | Msa0014950:CDS |
| TCGTTTATGATCTTTGTCTC+TGG | 0.443243 | 1_1:+23962762 | None:intergenic |
| ACAAGAAGCTTATTGAAGAA+TGG | 0.446784 | 1_1:-23962976 | Msa0014950:CDS |
| AATCCTTGGTCAGAACTTGA+TGG | 0.452943 | 1_1:-23962792 | Msa0014950:CDS |
| GAGGCACATCCGGATGTTAT+CGG | 0.456871 | 1_1:-23964750 | Msa0014950:CDS |
| TTCACACGGAAAACATTTGT+CGG | 0.457334 | 1_1:+23963342 | None:intergenic |
| AACTTGACGAGCAACAGAAC+TGG | 0.458071 | 1_1:+23961504 | None:intergenic |
| TGACTCAGGATTTGTGTAGT+TGG | 0.458162 | 1_1:+23966757 | None:intergenic |
| AATAGCCAGCCCGCAGTCAA+TGG | 0.458513 | 1_1:-23962699 | Msa0014950:CDS |
| CACCTTATGGTTACGGAGGA+AGG | 0.459159 | 1_1:+23966675 | None:intergenic |
| GGACAATCTATTCGAAAGAA+TGG | 0.460536 | 1_1:-23966243 | Msa0014950:CDS |
| GACTGCGGGCTGGCTATTGA+TGG | 0.461456 | 1_1:+23962704 | None:intergenic |
| CAGCTACTTCTTGGTCAGCT+TGG | 0.462499 | 1_1:-23961618 | Msa0014950:CDS |
| TTTCCACCGAAAACCGAAGA+TGG | 0.464515 | 1_1:-23966269 | Msa0014950:CDS |
| ATATGAATAATCACGTTCAA+TGG | 0.465150 | 1_1:+23961460 | None:intergenic |
| CCGGATGTTATCGGAGCTGA+TGG | 0.465253 | 1_1:-23964741 | Msa0014950:CDS |
| CTTGAGACGATTAAGAGTAA+TGG | 0.466862 | 1_1:-23966050 | Msa0014950:CDS |
| AGCAAATATGGTGACTACTT+TGG | 0.469128 | 1_1:-23964907 | Msa0014950:CDS |
| GTTGTATTATTTCCTTAGCT+GGG | 0.469151 | 1_1:+23962290 | None:intergenic |
| AGGGCAGAGCGCGGAATGAG+AGG | 0.469297 | 1_1:+23966700 | None:intergenic |
| GGCATAATTCCAGGCACAAT+AGG | 0.469375 | 1_1:+23964258 | None:intergenic |
| TCACACGGAAAACATTTGTC+GGG | 0.469417 | 1_1:+23963343 | None:intergenic |
| AGTTAGGAATGGTCTATCCT+TGG | 0.470597 | 1_1:+23962393 | None:intergenic |
| TGAATGATTGTCGCCAAATT+GGG | 0.470610 | 1_1:-23964290 | Msa0014950:CDS |
| CAAAATTCGCTCAGCTAACT+CGG | 0.472623 | 1_1:-23966324 | Msa0014950:CDS |
| AAGTCAGATTCTCCTATTGT+AGG | 0.473470 | 1_1:-23962672 | Msa0014950:intron |
| AAGCGTTGAAGATATTTATG+AGG | 0.475184 | 1_1:-23962939 | Msa0014950:intron |
| GATTGGTTCTCAACTTTCCC+AGG | 0.481860 | 1_1:+23962811 | None:intergenic |
| TTTCCCCATTGACTGCGGGC+TGG | 0.482523 | 1_1:+23962694 | None:intergenic |
| TGGGTATTGGTCCCATCCTA+TGG | 0.483089 | 1_1:+23963166 | None:intergenic |
| TGCGATATTACATGGGGAGC+TGG | 0.483108 | 1_1:-23966191 | Msa0014950:CDS |
| TCCAACGCCCATGTGGGTAT+TGG | 0.483116 | 1_1:+23963153 | None:intergenic |
| TCACAGCATTGACATCGGTT+TGG | 0.483991 | 1_1:+23962326 | None:intergenic |
| CCCCTTCCTCCGTAACCATA+AGG | 0.485290 | 1_1:-23966677 | Msa0014950:intron |
| CAATAGTATACCAAAAGATT+GGG | 0.488207 | 1_1:+23963307 | None:intergenic |
| CTGTTAATAAAGAAGGGATC+TGG | 0.488264 | 1_1:-23962363 | Msa0014950:CDS |
| AGGTGATCCGCCTCATGGAC+AGG | 0.488918 | 1_1:-23966003 | Msa0014950:CDS |
| AAGGGATTTATCCGTATGAC+TGG | 0.491090 | 1_1:-23964222 | Msa0014950:CDS |
| TGAAATTTGGTCAAGAGGAT+GGG | 0.493658 | 1_1:-23962218 | Msa0014950:CDS |
| CTTTAACGTGTGGAAGGATG+AGG | 0.495412 | 1_1:-23962245 | Msa0014950:CDS |
| GATTCCGGTAACCCGTCATA+TGG | 0.497085 | 1_1:-23963128 | Msa0014950:CDS |
| GAATGAGAGGAAGTGTTAGT+TGG | 0.500193 | 1_1:+23966713 | None:intergenic |
| CAAGGCTTATGGAATACACC+TGG | 0.501496 | 1_1:-23963914 | Msa0014950:CDS |
| ATCAAGTTCTGACCAAGGAT+TGG | 0.502003 | 1_1:+23962794 | None:intergenic |
| AAATTTCTAGATCCTTACCT+TGG | 0.504186 | 1_1:-23963371 | Msa0014950:CDS |
| TAGATAGATCTGTGTGACTC+AGG | 0.504625 | 1_1:+23966743 | None:intergenic |
| TGAATCGCACCTTATGGTTA+CGG | 0.504931 | 1_1:+23966668 | None:intergenic |
| TCAAACATCTCGTTGATAGA+GGG | 0.506045 | 1_1:+23961161 | None:intergenic |
| ATAACTTGTCCTATTGTGCC+TGG | 0.508173 | 1_1:-23964267 | Msa0014950:CDS |
| CTTCTGCTCCAAGGAAAAGC+TGG | 0.510827 | 1_1:-23962434 | Msa0014950:CDS |
| CCTTATGGTTACGGAGGAAG+GGG | 0.510830 | 1_1:+23966677 | None:intergenic |
| TCAAAGGAATGAGCGTCAAT+GGG | 0.515322 | 1_1:+23961328 | None:intergenic |
| ACGGATTGTGTGCAACCATT+CGG | 0.515864 | 1_1:+23966219 | None:intergenic |
| AAAGCAGCCATTATCTCAGC+AGG | 0.519992 | 1_1:+23963967 | None:intergenic |
| AGTTAATCCAGAACTTATTG+TGG | 0.524444 | 1_1:-23961135 | Msa0014950:three_prime_UTR |
| CATACAACCATGAAATTCAA+AGG | 0.525853 | 1_1:+23961297 | None:intergenic |
| TATGCCCATTAACAATTACA+AGG | 0.529995 | 1_1:-23964241 | Msa0014950:CDS |
| ACCAATACCCACATGGGCGT+TGG | 0.531685 | 1_1:-23963154 | Msa0014950:CDS |
| ACCCTGAGGCTGATGCATCC+AGG | 0.533122 | 1_1:-23962186 | Msa0014950:CDS |
| CTGGAGAAGATCAACACAAA+GGG | 0.536159 | 1_1:-23962735 | Msa0014950:CDS |
| AAGTTTGTTCAGACTGAAGG+AGG | 0.537451 | 1_1:-23965978 | Msa0014950:CDS |
| CTCAGGATTTGTGTAGTTGG+TGG | 0.538197 | 1_1:+23966760 | None:intergenic |
| ACCTTATGGTTACGGAGGAA+GGG | 0.539175 | 1_1:+23966676 | None:intergenic |
| CAGTTAATGCACCATATGAC+GGG | 0.539968 | 1_1:+23963117 | None:intergenic |
| ACATTTGTCGGGCGTCTCCA+AGG | 0.541086 | 1_1:+23963354 | None:intergenic |
| CCATCAGCTCCGATAACATC+CGG | 0.541172 | 1_1:+23964741 | None:intergenic |
| TTCAAAGGAAAGAAATTCAA+AGG | 0.544976 | 1_1:+23961312 | None:intergenic |
| GGCTGCTTTAGAGCCTATCA+AGG | 0.547619 | 1_1:-23963953 | Msa0014950:CDS |
| CTTAGAGGTGATCCGCCTCA+TGG | 0.549348 | 1_1:-23966008 | Msa0014950:CDS |
| CGATGTCAATGCTGTGACAT+GGG | 0.553549 | 1_1:-23962320 | Msa0014950:CDS |
| ATCCAGGAAATTGGTTGAAG+AGG | 0.553770 | 1_1:-23962170 | Msa0014950:intron |
| AGGAAGGGGAGGGCAGAGCG+CGG | 0.559023 | 1_1:+23966691 | None:intergenic |
| CTTAGAGTTCTTCTGCTCCA+AGG | 0.559475 | 1_1:-23962443 | Msa0014950:CDS |
| AAATATGGAGAAATCTGCAT+TGG | 0.560402 | 1_1:-23963830 | Msa0014950:CDS |
| AGCTTCTTGTCCTTTGCACG+TGG | 0.561868 | 1_1:+23962989 | None:intergenic |
| GAGAAGTTTGTTCAGACTGA+AGG | 0.565987 | 1_1:-23965981 | Msa0014950:CDS |
| TGTCGGGCGTCTCCAAGGTA+AGG | 0.566462 | 1_1:+23963359 | None:intergenic |
| GAAAGTTGAGAACCAATCCT+TGG | 0.566800 | 1_1:-23962806 | Msa0014950:CDS |
| AGCTGATGGGTTGGCTACAG+CGG | 0.567010 | 1_1:-23964727 | Msa0014950:CDS |
| TCTTACTTGTACTAATATGC+CGG | 0.567997 | 1_1:-23966093 | Msa0014950:CDS |
| TCAGTTAATGCACCATATGA+CGG | 0.568519 | 1_1:+23963116 | None:intergenic |
| TTCCACACGTTAAAGCTGAC+AGG | 0.569342 | 1_1:+23962253 | None:intergenic |
| CTGACAGGATCTACAATGGT+TGG | 0.569570 | 1_1:+23962268 | None:intergenic |
| GGACAATGAAGAAGCTGTCA+AGG | 0.570346 | 1_1:-23963932 | Msa0014950:CDS |
| TGGTGGTTATGTTTATCAGA+AGG | 0.571947 | 1_1:-23962470 | Msa0014950:CDS |
| TCCTGGATGCATCAGCCTCA+GGG | 0.573236 | 1_1:+23962185 | None:intergenic |
| TATGGTTACGGAGGAAGGGG+AGG | 0.573578 | 1_1:+23966680 | None:intergenic |
| TGGATTCTTCAATTAAGCCC+AGG | 0.575062 | 1_1:+23963394 | None:intergenic |
| GTCGACAACGATTATGCCAA+TGG | 0.576292 | 1_1:-23961596 | Msa0014950:CDS |
| GGCGAACATCTTCTTTCACA+CGG | 0.580557 | 1_1:+23963328 | None:intergenic |
| ACATATCAAGGACCATAGGA+TGG | 0.581922 | 1_1:-23963178 | Msa0014950:CDS |
| TGTTATCGGAGCTGATGGGT+TGG | 0.583783 | 1_1:-23964736 | Msa0014950:CDS |
| GATGGGTTGGCTACAGCGGA+AGG | 0.584311 | 1_1:-23964723 | Msa0014950:CDS |
| CCGATGTCAATGCTGTGACA+TGG | 0.584786 | 1_1:-23962321 | Msa0014950:CDS |
| TTTATAAATATATATGTGAG+TGG | 0.586306 | 1_1:-23961260 | Msa0014950:three_prime_UTR |
| ATGGTTACGGAGGAAGGGGA+GGG | 0.586350 | 1_1:+23966681 | None:intergenic |
| ACCGAAAACCGAAGATGGAG+TGG | 0.592938 | 1_1:-23966264 | Msa0014950:CDS |
| TAGTATTATAGTAACCGGTA+AGG | 0.594228 | 1_1:-23966788 | Msa0014950:five_prime_UTR |
| TAGACCATTCCTAACTTACA+TGG | 0.595748 | 1_1:-23962386 | Msa0014950:CDS |
| GTTCATGCGACCACGTGCAA+AGG | 0.596761 | 1_1:-23962999 | Msa0014950:CDS |
| GCATGATCGATCTTATCGAC+CGG | 0.598864 | 1_1:+23966074 | None:intergenic |
| CAAACATCTCGTTGATAGAG+GGG | 0.603500 | 1_1:+23961162 | None:intergenic |
| AGCTACATATCAAGGACCAT+AGG | 0.604000 | 1_1:-23963182 | Msa0014950:CDS |
| GGGATCTGGAAATCTAATGT+AGG | 0.605175 | 1_1:-23962349 | Msa0014950:CDS |
| TGTCAGCTTTAACGTGTGGA+AGG | 0.606512 | 1_1:-23962251 | Msa0014950:CDS |
| CGGGCTGGCTATTGATGGTG+AGG | 0.606798 | 1_1:+23962709 | None:intergenic |
| CTAGGCTGGGGTGGACCTGG+TGG | 0.609998 | 1_1:-23962487 | Msa0014950:intron |
| ATGCCCATTAACAATTACAA+GGG | 0.610191 | 1_1:-23964240 | Msa0014950:CDS |
| GACAATCATTCACAAACTTG+AGG | 0.610588 | 1_1:+23964301 | None:intergenic |
| AACTTCTCCTGTCCATGAGG+CGG | 0.610975 | 1_1:+23965996 | None:intergenic |
| ACATGGCTGTTAATAAAGAA+GGG | 0.611532 | 1_1:-23962369 | Msa0014950:CDS |
| CGGATGTTATCGGAGCTGAT+GGG | 0.613245 | 1_1:-23964740 | Msa0014950:CDS |
| ACAGCCATGTAAGTTAGGAA+TGG | 0.614548 | 1_1:+23962382 | None:intergenic |
| ACATATTTACTAGGCTGGGG+TGG | 0.619010 | 1_1:-23962496 | Msa0014950:intron |
| GAATCACTCCAACGCCCATG+TGG | 0.619562 | 1_1:+23963146 | None:intergenic |
| AAAGATCATAAACGAGCACC+TGG | 0.622031 | 1_1:-23962754 | Msa0014950:CDS |
| ATCCTGTCAGCTTTAACGTG+TGG | 0.626495 | 1_1:-23962255 | Msa0014950:CDS |
| ATTCGAAAGAATGGACCGAA+TGG | 0.629061 | 1_1:-23966234 | Msa0014950:CDS |
| ATCAGTGTCATAAAATAACT+GGG | 0.629468 | 1_1:+23964329 | None:intergenic |
| CCATGTCACAGCATTGACAT+CGG | 0.635575 | 1_1:+23962321 | None:intergenic |
| CAAACCTGGATAACCAGCAA+TGG | 0.638102 | 1_1:+23964879 | None:intergenic |
| CATATCAAGGACCATAGGAT+GGG | 0.644379 | 1_1:-23963177 | Msa0014950:CDS |
| TTCTGATAAACATAACCACC+AGG | 0.646616 | 1_1:+23962472 | None:intergenic |
| TCTTGCTTACTTGAAGAGCA+AGG | 0.646699 | 1_1:-23964688 | Msa0014950:intron |
| AGCTGACCAAGAAGTAGCTG+CGG | 0.652180 | 1_1:+23961621 | None:intergenic |
| AGTTTGTTCAGACTGAAGGA+GGG | 0.652643 | 1_1:-23965977 | Msa0014950:CDS |
| TGCACTTGTTGAGAAATCCA+AGG | 0.656610 | 1_1:-23962410 | Msa0014950:CDS |
| GGATGGGACCAATACCCACA+TGG | 0.657120 | 1_1:-23963161 | Msa0014950:CDS |
| GATATTACATGGGGAGCTGG+AGG | 0.661605 | 1_1:-23966188 | Msa0014950:CDS |
| GATGTCAATGCTGTGACATG+GGG | 0.669542 | 1_1:-23962319 | Msa0014950:CDS |
| ACAAACTTCTCCTGTCCATG+AGG | 0.669668 | 1_1:+23965993 | None:intergenic |
| CCTGGAGAAGATCAACACAA+AGG | 0.672532 | 1_1:-23962736 | Msa0014950:CDS |
| AATCACTCCAACGCCCATGT+GGG | 0.676294 | 1_1:+23963147 | None:intergenic |
| AAGGCTTATGGAATACACCT+GGG | 0.683629 | 1_1:-23963913 | Msa0014950:CDS |
| AAAGCTGACAGGATCTACAA+TGG | 0.683871 | 1_1:+23962264 | None:intergenic |
| TAGCCAGCCCGCAGTCAATG+GGG | 0.690736 | 1_1:-23962697 | Msa0014950:CDS |
| GATGGGACCAATACCCACAT+GGG | 0.692476 | 1_1:-23963160 | Msa0014950:CDS |
| TGTCAATGCTGTGACATGGG+GGG | 0.697886 | 1_1:-23962317 | Msa0014950:CDS |
| ATCGCACCTTATGGTTACGG+AGG | 0.705077 | 1_1:+23966671 | None:intergenic |
| ATGTCAATGCTGTGACATGG+GGG | 0.710612 | 1_1:-23962318 | Msa0014950:CDS |
| AGACCATCAAGTTCTGACCA+AGG | 0.715198 | 1_1:+23962789 | None:intergenic |
| ATGGGCGAGCTTATACCCTG+AGG | 0.732726 | 1_1:-23962200 | Msa0014950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATTATATTTTTTTT+TGG | - | chr1_1:23962150-23962169 | Msa0014950:intron | 0.0% |
| !!! | TTAATTATTGATTTTAGTTT+TGG | - | chr1_1:23961439-23961458 | Msa0014950:three_prime_UTR | 10.0% |
| !!! | AAATTATATTTTTTTTTGGT+AGG | - | chr1_1:23962154-23962173 | Msa0014950:intron | 10.0% |
| !!! | TAAAATTAGTACAAATTTTA+CGG | - | chr1_1:23962180-23962199 | Msa0014950:CDS | 10.0% |
| !!! | TTTTCATTTTCTTTTTAAAA+AGG | + | chr1_1:23963373-23963392 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCATATTATTT+TGG | - | chr1_1:23964404-23964423 | Msa0014950:intron | 10.0% |
| !! | AACTTTCTTATAAATAATAT+AGG | - | chr1_1:23965756-23965775 | Msa0014950:intron | 10.0% |
| !!! | AGTTGAATTTTAAAAAAAAA+TGG | + | chr1_1:23965963-23965982 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAAAGAAGATT+AGG | + | chr1_1:23961317-23961336 | None:intergenic | 15.0% |
| !!! | AAAATTATAAGTTTCTGAAA+TGG | + | chr1_1:23961368-23961387 | None:intergenic | 15.0% |
| !!! | AATTTTAACTGAATCAATTT+TGG | - | chr1_1:23962259-23962278 | Msa0014950:CDS | 15.0% |
| !!! | TTTTTATTAGTTTCTATGTT+GGG | + | chr1_1:23962752-23962771 | None:intergenic | 15.0% |
| !! | GTTCAATCTTAAATAAAAAT+TGG | + | chr1_1:23964140-23964159 | None:intergenic | 15.0% |
| !!! | AAATGCAATTTTTTATAGTA+TGG | - | chr1_1:23964272-23964291 | Msa0014950:CDS | 15.0% |
| !!! | AAAATCGTTTCTTATTTTAT+TGG | - | chr1_1:23965884-23965903 | Msa0014950:intron | 15.0% |
| !!! | TTTTTAAAACAAGTATCATA+TGG | + | chr1_1:23965930-23965949 | None:intergenic | 15.0% |
| !!! | TTATATAGATGATTTTATGT+TGG | - | chr1_1:23966426-23966445 | Msa0014950:intron | 15.0% |
| !!! | AATTAATTGTTTGGAATATA+TGG | - | chr1_1:23966456-23966475 | Msa0014950:intron | 15.0% |
| !! | TTTATAAATATATATGTGAG+TGG | - | chr1_1:23966604-23966623 | Msa0014950:intron | 15.0% |
| !! | AATAGTAGTATTATAGTAAC+CGG | - | chr1_1:23961071-23961090 | Msa0014950:three_prime_UTR | 20.0% |
| !! | AATTAATCAATGATTAGATC+AGG | + | chr1_1:23961425-23961444 | None:intergenic | 20.0% |
| !! | AATGAAAATACTACTTTGTT+TGG | + | chr1_1:23961568-23961587 | None:intergenic | 20.0% |
| !!! | TTTTTGTTATTGTTTTAGTG+TGG | - | chr1_1:23962025-23962044 | Msa0014950:intron | 20.0% |
| !! | TATTTCATCTAATCAAATCA+AGG | + | chr1_1:23962130-23962149 | None:intergenic | 20.0% |
| !! | GAAGTAAAGTCATATATATT+TGG | + | chr1_1:23962233-23962252 | None:intergenic | 20.0% |
| !!! | ACCATAGTTTATTTAAAATC+AGG | - | chr1_1:23962287-23962306 | Msa0014950:CDS | 20.0% |
| !!! | ACCTGATTTTAAATAAACTA+TGG | + | chr1_1:23962291-23962310 | None:intergenic | 20.0% |
| !!! | GTTTTTATTAGTTTCTATGT+TGG | + | chr1_1:23962753-23962772 | None:intergenic | 20.0% |
| !! | TATAATGTTCCATAACTTAT+TGG | + | chr1_1:23962820-23962839 | None:intergenic | 20.0% |
| !!! | AATTTTATGAAAGTAAGCTT+CGG | + | chr1_1:23962867-23962886 | None:intergenic | 20.0% |
| !! | ATAAAATTTGACATACATGT+CGG | - | chr1_1:23962879-23962898 | Msa0014950:intron | 20.0% |
| !!! | TAACTTTTGATCAATCAAAA+GGG | + | chr1_1:23963212-23963231 | None:intergenic | 20.0% |
| !!! | ATAACTTTTGATCAATCAAA+AGG | + | chr1_1:23963213-23963232 | None:intergenic | 20.0% |
| !!! | ATTTTTAGAAAACATAATGC+TGG | + | chr1_1:23963710-23963729 | None:intergenic | 20.0% |
| !! | TCTAAAAATTCTATTATCTC+AGG | - | chr1_1:23963721-23963740 | Msa0014950:intron | 20.0% |
| !! | CTAAAAATTCTATTATCTCA+GGG | - | chr1_1:23963722-23963741 | Msa0014950:intron | 20.0% |
| !!! | TTTTTTCTGACATATTTACT+AGG | - | chr1_1:23965359-23965378 | Msa0014950:intron | 20.0% |
| !! | AATGGAAAAAAAGAAAAGAA+AGG | + | chr1_1:23966389-23966408 | None:intergenic | 20.0% |
| ! | GTAAATTAATGGTAAATGCA+AGG | + | chr1_1:23961290-23961309 | None:intergenic | 25.0% |
| ! | GATTAGGAAGAGTAAATTAA+TGG | + | chr1_1:23961301-23961320 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTTTTGATTTTGT+CGG | - | chr1_1:23961454-23961473 | Msa0014950:three_prime_UTR | 25.0% |
| ! | ACAAAAAGAGAAGAAAATGA+AGG | - | chr1_1:23961510-23961529 | Msa0014950:three_prime_UTR | 25.0% |
| ! | CTAATCAAATCAAGGTTTAA+AGG | + | chr1_1:23962122-23962141 | None:intergenic | 25.0% |
| ! | TTTCAATTGATTGTTCCTTT+AGG | - | chr1_1:23962354-23962373 | Msa0014950:CDS | 25.0% |
| !!! | TAACATTTCTATTTTTGCCA+TGG | - | chr1_1:23962422-23962441 | Msa0014950:CDS | 25.0% |
| ! | CAAAATAAATCAAGTCCAAA+AGG | + | chr1_1:23962499-23962518 | None:intergenic | 25.0% |
| ! | TTTCATATTGAAGAGTTTCA+TGG | + | chr1_1:23962584-23962603 | None:intergenic | 25.0% |
| !!! | ATGCTATTTTTTTTCGTACT+CGG | - | chr1_1:23962686-23962705 | Msa0014950:CDS | 25.0% |
| !! | ATTTTATGAAAGTAAGCTTC+GGG | + | chr1_1:23962866-23962885 | None:intergenic | 25.0% |
| ! | TAAAATTTGACATACATGTC+GGG | - | chr1_1:23962880-23962899 | Msa0014950:intron | 25.0% |
| ! | ATATTAATGAGAGCAAATGA+TGG | + | chr1_1:23963080-23963099 | None:intergenic | 25.0% |
| ! | ATGAAAATGCAAAACTAAAG+AGG | - | chr1_1:23963386-23963405 | Msa0014950:CDS | 25.0% |
| ! | ATCAGTGTCATAAAATAACT+GGG | + | chr1_1:23963538-23963557 | None:intergenic | 25.0% |
| ! | TATCAGTGTCATAAAATAAC+TGG | + | chr1_1:23963539-23963558 | None:intergenic | 25.0% |
| ! | AATCCCTTGTAATTGTTAAT+GGG | + | chr1_1:23963630-23963649 | None:intergenic | 25.0% |
| ! | AAATCCCTTGTAATTGTTAA+TGG | + | chr1_1:23963631-23963650 | None:intergenic | 25.0% |
| !! | TTTTACAAAAACCAGTCATA+CGG | + | chr1_1:23963656-23963675 | None:intergenic | 25.0% |
| !! | TATTTTGTCAGTCAATGTAA+TGG | - | chr1_1:23963822-23963841 | Msa0014950:CDS | 25.0% |
| ! | TGAAATGTGCAAAAAGATTA+TGG | - | chr1_1:23963977-23963996 | Msa0014950:intron | 25.0% |
| ! | TTTATAGTATGGATGAAACA+TGG | - | chr1_1:23964283-23964302 | Msa0014950:CDS | 25.0% |
| ! | TAGAATATCTATAACTACGT+GGG | + | chr1_1:23964321-23964340 | None:intergenic | 25.0% |
| ! | TTAGAATATCTATAACTACG+TGG | + | chr1_1:23964322-23964341 | None:intergenic | 25.0% |
| ! | CAATAGTATACCAAAAGATT+GGG | + | chr1_1:23964560-23964579 | None:intergenic | 25.0% |
| ! | ACAATAGTATACCAAAAGAT+TGG | + | chr1_1:23964561-23964580 | None:intergenic | 25.0% |
| ! | TATTCAGAAAAAATCATGCA+TGG | + | chr1_1:23965240-23965259 | None:intergenic | 25.0% |
| ! | TTTCACTAGACATTATAATC+AGG | + | chr1_1:23965277-23965296 | None:intergenic | 25.0% |
| ! | TAATGTCTAGTGAAATATTG+AGG | - | chr1_1:23965282-23965301 | Msa0014950:intron | 25.0% |
| ! | AATGTCTAGTGAAATATTGA+GGG | - | chr1_1:23965283-23965302 | Msa0014950:intron | 25.0% |
| ! | GTCATCCATATTAATGAATT+CGG | - | chr1_1:23965313-23965332 | Msa0014950:intron | 25.0% |
| ! | TGTTACCGAATTCATTAATA+TGG | + | chr1_1:23965321-23965340 | None:intergenic | 25.0% |
| !! | AAGTTATGTTCAAGCTTTAA+AGG | + | chr1_1:23965741-23965760 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATTGAACCAAA+TGG | + | chr1_1:23966118-23966137 | None:intergenic | 25.0% |
| ! | AATGCTGACATGAAATATAT+GGG | + | chr1_1:23966156-23966175 | None:intergenic | 25.0% |
| !!! | TCAGCATTGTATTTTGTTTT+TGG | - | chr1_1:23966168-23966187 | Msa0014950:CDS | 25.0% |
| ! | ATATGAATAATCACGTTCAA+TGG | + | chr1_1:23966407-23966426 | None:intergenic | 25.0% |
| ! | TTCAAAGGAAAGAAATTCAA+AGG | + | chr1_1:23966555-23966574 | None:intergenic | 25.0% |
| ! | TTTCTTTCCTTTGAATTTCA+TGG | - | chr1_1:23966560-23966579 | Msa0014950:intron | 25.0% |
| TAGTATTATAGTAACCGGTA+AGG | - | chr1_1:23961076-23961095 | Msa0014950:three_prime_UTR | 30.0% | |
| GGATTAACGAGAATGATAAT+TGG | + | chr1_1:23961259-23961278 | None:intergenic | 30.0% | |
| CATGTAATATCGCAAAAAGA+CGG | + | chr1_1:23961667-23961686 | None:intergenic | 30.0% | |
| ! | GTCTTTTTGCGATATTACAT+GGG | - | chr1_1:23961666-23961685 | Msa0014950:intron | 30.0% |
| ! | TCTTTTTGCGATATTACATG+GGG | - | chr1_1:23961667-23961686 | Msa0014950:intron | 30.0% |
| TCTTACTTGTACTAATATGC+CGG | - | chr1_1:23961771-23961790 | Msa0014950:intron | 30.0% | |
| TTGAGACGATTAAGAGTAAT+GGG | - | chr1_1:23961815-23961834 | Msa0014950:intron | 30.0% | |
| !!! | ATTTCTATTTTTGCCATGGA+TGG | - | chr1_1:23962426-23962445 | Msa0014950:CDS | 30.0% |
| GTAAAGTTGAGCATAAGTTA+AGG | + | chr1_1:23962477-23962496 | None:intergenic | 30.0% | |
| ! | TTATGCTCAACTTTACCTTT+TGG | - | chr1_1:23962481-23962500 | Msa0014950:CDS | 30.0% |
| !!! | AGGTGTTTCTTTGCATTTTT+TGG | + | chr1_1:23962775-23962794 | None:intergenic | 30.0% |
| ACTGTACTATGGTTTCTAAA+AGG | + | chr1_1:23962795-23962814 | None:intergenic | 30.0% | |
| ACTTATTGGAAACTGTACTA+TGG | + | chr1_1:23962806-23962825 | None:intergenic | 30.0% | |
| GTACAGTTTCCAATAAGTTA+TGG | - | chr1_1:23962808-23962827 | Msa0014950:CDS | 30.0% | |
| !! | GGTTTTATCATCAGTATGAA+TGG | + | chr1_1:23962845-23962864 | None:intergenic | 30.0% |
| CAACATATCAGAAGCAAATA+TGG | - | chr1_1:23962945-23962964 | Msa0014950:CDS | 30.0% | |
| GATAACATAAGAAACAAACC+TGG | + | chr1_1:23963002-23963021 | None:intergenic | 30.0% | |
| AATATTGTCTTTCTCTTCAG+AGG | - | chr1_1:23963095-23963114 | Msa0014950:intron | 30.0% | |
| !! | TCATCTTTCTGTCTTATTTC+TGG | - | chr1_1:23963452-23963471 | Msa0014950:intron | 30.0% |
| ! | TGAGCTTATGTTCCTTTTAT+AGG | - | chr1_1:23963485-23963504 | Msa0014950:intron | 30.0% |
| TATGCCCATTAACAATTACA+AGG | - | chr1_1:23963623-23963642 | Msa0014950:intron | 30.0% | |
| ATGCCCATTAACAATTACAA+GGG | - | chr1_1:23963624-23963643 | Msa0014950:intron | 30.0% | |
| !!! | TGACTGGTTTTTGTAAAACA+AGG | - | chr1_1:23963658-23963677 | Msa0014950:intron | 30.0% |
| !!! | GACTGGTTTTTGTAAAACAA+GGG | - | chr1_1:23963659-23963678 | Msa0014950:intron | 30.0% |
| !! | TTACTTTTCATGCCTTCTTT+GGG | + | chr1_1:23963759-23963778 | None:intergenic | 30.0% |
| AAATATGGAGAAATCTGCAT+TGG | - | chr1_1:23964034-23964053 | Msa0014950:intron | 30.0% | |
| TATGCAATAACACAAACTAG+AGG | + | chr1_1:23964092-23964111 | None:intergenic | 30.0% | |
| AAAAATTGCATTTCTGCACA+AGG | + | chr1_1:23964265-23964284 | None:intergenic | 30.0% | |
| TTGGCTAGAATTTACTTAAG+TGG | - | chr1_1:23964423-23964442 | Msa0014950:intron | 30.0% | |
| ! | AGGTAAGGATCTAGAAATTT+TGG | + | chr1_1:23964493-23964512 | None:intergenic | 30.0% |
| ! | AAATTTCTAGATCCTTACCT+TGG | - | chr1_1:23964493-23964512 | Msa0014950:intron | 30.0% |
| !! | GTTTTGTTACCAAGTATAAG+AGG | - | chr1_1:23964591-23964610 | Msa0014950:intron | 30.0% |
| ATTTCTGTCCAACAATTGTA+GGG | - | chr1_1:23964645-23964664 | Msa0014950:intron | 30.0% | |
| ! | TCCTTGATATGTAGCTTTTT+GGG | + | chr1_1:23964678-23964697 | None:intergenic | 30.0% |
| ACAAGAAGCTTATTGAAGAA+TGG | - | chr1_1:23964888-23964907 | Msa0014950:CDS | 30.0% | |
| CAAGAAGCTTATTGAAGAAT+GGG | - | chr1_1:23964889-23964908 | Msa0014950:CDS | 30.0% | |
| ! | ATATCTTCAACGCTTTTCAA+GGG | + | chr1_1:23964920-23964939 | None:intergenic | 30.0% |
| ! | AATATCTTCAACGCTTTTCA+AGG | + | chr1_1:23964921-23964940 | None:intergenic | 30.0% |
| !! | AAGCGTTGAAGATATTTATG+AGG | - | chr1_1:23964925-23964944 | Msa0014950:CDS | 30.0% |
| TTTAGTTGATCTTGAACTGT+TGG | + | chr1_1:23964992-23965011 | None:intergenic | 30.0% | |
| TATTAACAGCCATGTAAGTT+AGG | + | chr1_1:23965490-23965509 | None:intergenic | 30.0% | |
| TACATGGCTGTTAATAAAGA+AGG | - | chr1_1:23965494-23965513 | Msa0014950:intron | 30.0% | |
| ACATGGCTGTTAATAAAGAA+GGG | - | chr1_1:23965495-23965514 | Msa0014950:intron | 30.0% | |
| GTTGTATTATTTCCTTAGCT+GGG | + | chr1_1:23965577-23965596 | None:intergenic | 30.0% | |
| !! | TCAAGCTTTAAAGGATTTGT+TGG | + | chr1_1:23965732-23965751 | None:intergenic | 30.0% |
| AATTCAACTGTACACTGAAT+TGG | - | chr1_1:23965974-23965993 | Msa0014950:CDS | 30.0% | |
| TCAATTGATTAACCATGAAC+TGG | + | chr1_1:23966094-23966113 | None:intergenic | 30.0% | |
| GGTTAATCAATTGAACCATT+TGG | - | chr1_1:23966100-23966119 | Msa0014950:CDS | 30.0% | |
| ATGCTGACATGAAATATATG+GGG | + | chr1_1:23966155-23966174 | None:intergenic | 30.0% | |
| CAATGCTGACATGAAATATA+TGG | + | chr1_1:23966157-23966176 | None:intergenic | 30.0% | |
| !!! | TATTTTGTTTTTGGCTGTAG+AGG | - | chr1_1:23966177-23966196 | Msa0014950:CDS | 30.0% |
| ATTCTTTGTAATCATGTCAC+AGG | - | chr1_1:23966216-23966235 | Msa0014950:CDS | 30.0% | |
| ! | GGAGTGTCAAATTAATTGTT+TGG | - | chr1_1:23966447-23966466 | Msa0014950:intron | 30.0% |
| CATACAACCATGAAATTCAA+AGG | + | chr1_1:23966570-23966589 | None:intergenic | 30.0% | |
| TGGAAGTAGAAGAAGAAAAT+TGG | - | chr1_1:23966624-23966643 | Msa0014950:intron | 30.0% | |
| AGTTAATCCAGAACTTATTG+TGG | - | chr1_1:23966729-23966748 | Msa0014950:five_prime_UTR | 30.0% | |
| GATAAATCCACAATAAGTTC+TGG | + | chr1_1:23966739-23966758 | None:intergenic | 30.0% | |
| AGAGTGAATAACGAAACAGA+GGG | + | chr1_1:23961233-23961252 | None:intergenic | 35.0% | |
| TAGAGTGAATAACGAAACAG+AGG | + | chr1_1:23961234-23961253 | None:intergenic | 35.0% | |
| GGTAAATGCAAGGATTAATG+AGG | + | chr1_1:23961280-23961299 | None:intergenic | 35.0% | |
| !! | TTTTGTCGGTTACTTGATTC+AGG | - | chr1_1:23961468-23961487 | Msa0014950:three_prime_UTR | 35.0% |
| GGACAATCTATTCGAAAGAA+TGG | - | chr1_1:23961621-23961640 | Msa0014950:CDS | 35.0% | |
| ! | CGTCTTTTTGCGATATTACA+TGG | - | chr1_1:23961665-23961684 | Msa0014950:intron | 35.0% |
| CTTGAGACGATTAAGAGTAA+TGG | - | chr1_1:23961814-23961833 | Msa0014950:intron | 35.0% | |
| !!! | TTAGTGTGGTTTTAGATGCA+TGG | - | chr1_1:23962039-23962058 | Msa0014950:intron | 35.0% |
| GAAACAGTAAGTGCAGATTT+GGG | + | chr1_1:23962328-23962347 | None:intergenic | 35.0% | |
| AGAAACAGTAAGTGCAGATT+TGG | + | chr1_1:23962329-23962348 | None:intergenic | 35.0% | |
| TCGGAAGATTCTTTATGCAT+TGG | - | chr1_1:23962705-23962724 | Msa0014950:CDS | 35.0% | |
| AGCAAATATGGTGACTACTT+TGG | - | chr1_1:23962957-23962976 | Msa0014950:CDS | 35.0% | |
| AAATGCAAAACTAAAGAGGC+AGG | - | chr1_1:23963390-23963409 | Msa0014950:CDS | 35.0% | |
| AATGCAAAACTAAAGAGGCA+GGG | - | chr1_1:23963391-23963410 | Msa0014950:CDS | 35.0% | |
| AAGGAACATAAGCTCAGAAA+AGG | + | chr1_1:23963481-23963500 | None:intergenic | 35.0% | |
| !!! | TTCCTTTTATAGGTTGATGC+TGG | - | chr1_1:23963495-23963514 | Msa0014950:intron | 35.0% |
| GACAATCATTCACAAACTTG+AGG | + | chr1_1:23963566-23963585 | None:intergenic | 35.0% | |
| TGAATGATTGTCGCCAAATT+GGG | - | chr1_1:23963574-23963593 | Msa0014950:intron | 35.0% | |
| TAGGACAAGTTATCCCAATT+TGG | + | chr1_1:23963590-23963609 | None:intergenic | 35.0% | |
| ! | TTGTTAATGGGCATAATTCC+AGG | + | chr1_1:23963618-23963637 | None:intergenic | 35.0% |
| TTCTATTATCTCAGGGATCA+TGG | - | chr1_1:23963729-23963748 | Msa0014950:intron | 35.0% | |
| TCTATTATCTCAGGGATCAT+GGG | - | chr1_1:23963730-23963749 | Msa0014950:intron | 35.0% | |
| ! | TACTTTTCATGCCTTCTTTG+GGG | + | chr1_1:23963758-23963777 | None:intergenic | 35.0% |
| !!! | GTTACTTTTCATGCCTTCTT+TGG | + | chr1_1:23963760-23963779 | None:intergenic | 35.0% |
| TGCAAAAAGATTATGGCTCA+TGG | - | chr1_1:23963984-23964003 | Msa0014950:intron | 35.0% | |
| GCATCTTTACACGCTAAATA+TGG | - | chr1_1:23964019-23964038 | Msa0014950:intron | 35.0% | |
| AACTAGAGGTTGCATGAATT+AGG | + | chr1_1:23964078-23964097 | None:intergenic | 35.0% | |
| ! | GTTTGTTTAAAGCACATGAC+TGG | - | chr1_1:23964161-23964180 | Msa0014950:intron | 35.0% |
| ATATCTATAACTACGTGGGA+TGG | + | chr1_1:23964317-23964336 | None:intergenic | 35.0% | |
| TTCACACGGAAAACATTTGT+CGG | + | chr1_1:23964525-23964544 | None:intergenic | 35.0% | |
| CATTTCTGTCCAACAATTGT+AGG | - | chr1_1:23964644-23964663 | Msa0014950:intron | 35.0% | |
| ! | GTCCTTGATATGTAGCTTTT+TGG | + | chr1_1:23964679-23964698 | None:intergenic | 35.0% |
| TCAGTTAATGCACCATATGA+CGG | + | chr1_1:23964751-23964770 | None:intergenic | 35.0% | |
| TGAGGTAGAATTACTGTAGT+TGG | - | chr1_1:23964943-23964962 | Msa0014950:intron | 35.0% | |
| !! | AGATTCAGATTGTTTTGCCT+GGG | - | chr1_1:23965036-23965055 | Msa0014950:intron | 35.0% |
| TCGTTTATGATCTTTGTCTC+TGG | + | chr1_1:23965105-23965124 | None:intergenic | 35.0% | |
| AAGTCAGATTCTCCTATTGT+AGG | - | chr1_1:23965192-23965211 | Msa0014950:intron | 35.0% | |
| TTCTGACATATTTACTAGGC+TGG | - | chr1_1:23965363-23965382 | Msa0014950:intron | 35.0% | |
| TCTGACATATTTACTAGGCT+GGG | - | chr1_1:23965364-23965383 | Msa0014950:intron | 35.0% | |
| TTCTGATAAACATAACCACC+AGG | + | chr1_1:23965395-23965414 | None:intergenic | 35.0% | |
| TGGTGGTTATGTTTATCAGA+AGG | - | chr1_1:23965394-23965413 | Msa0014950:intron | 35.0% | |
| TAGACCATTCCTAACTTACA+TGG | - | chr1_1:23965478-23965497 | Msa0014950:intron | 35.0% | |
| CTGTTAATAAAGAAGGGATC+TGG | - | chr1_1:23965501-23965520 | Msa0014950:intron | 35.0% | |
| GGTTGTATTATTTCCTTAGC+TGG | + | chr1_1:23965578-23965597 | None:intergenic | 35.0% | |
| !!! | AGGATGAGGCTTTTGAAATT+TGG | - | chr1_1:23965633-23965652 | Msa0014950:intron | 35.0% |
| !!! | GCTTTTGAAATTTGGTCAAG+AGG | - | chr1_1:23965641-23965660 | Msa0014950:intron | 35.0% |
| TTGAAATTTGGTCAAGAGGA+TGG | - | chr1_1:23965645-23965664 | Msa0014950:intron | 35.0% | |
| TGAAATTTGGTCAAGAGGAT+GGG | - | chr1_1:23965646-23965665 | Msa0014950:intron | 35.0% | |
| TTTGTAATCATGTCACAGGT+TGG | - | chr1_1:23966220-23966239 | Msa0014950:CDS | 35.0% | |
| !! | ACAGAACTGGCTTTGTTTAA+AGG | + | chr1_1:23966350-23966369 | None:intergenic | 35.0% |
| ! | TTGGAGTCTAATGTTTTGCA+AGG | - | chr1_1:23966643-23966662 | Msa0014950:intron | 35.0% |
| ! | TCAAACATCTCGTTGATAGA+GGG | + | chr1_1:23966706-23966725 | None:intergenic | 35.0% |
| ! | TTCAAACATCTCGTTGATAG+AGG | + | chr1_1:23966707-23966726 | None:intergenic | 35.0% |
| TGACTCAGGATTTGTGTAGT+TGG | + | chr1_1:23961110-23961129 | None:intergenic | 40.0% | |
| TAGATAGATCTGTGTGACTC+AGG | + | chr1_1:23961124-23961143 | None:intergenic | 40.0% | |
| !! | GAATGAGAGGAAGTGTTAGT+TGG | + | chr1_1:23961154-23961173 | None:intergenic | 40.0% |
| TGAATCGCACCTTATGGTTA+CGG | + | chr1_1:23961199-23961218 | None:intergenic | 40.0% | |
| AAGAAGTGAATCGCACCTTA+TGG | + | chr1_1:23961205-23961224 | None:intergenic | 40.0% | |
| CAAAATTCGCTCAGCTAACT+CGG | - | chr1_1:23961540-23961559 | Msa0014950:three_prime_UTR | 40.0% | |
| TAGATTGTCCACTCCATCTT+CGG | + | chr1_1:23961611-23961630 | None:intergenic | 40.0% | |
| ATTCGAAAGAATGGACCGAA+TGG | - | chr1_1:23961630-23961649 | Msa0014950:intron | 40.0% | |
| ! | GAGAAGTTTGTTCAGACTGA+AGG | - | chr1_1:23961883-23961902 | Msa0014950:intron | 40.0% |
| ! | AAGTTTGTTCAGACTGAAGG+AGG | - | chr1_1:23961886-23961905 | Msa0014950:intron | 40.0% |
| ! | AGTTTGTTCAGACTGAAGGA+GGG | - | chr1_1:23961887-23961906 | Msa0014950:intron | 40.0% |
| TGCATGGTCGAGATATGAAA+AGG | - | chr1_1:23962055-23962074 | Msa0014950:intron | 40.0% | |
| GCATGGTCGAGATATGAAAA+GGG | - | chr1_1:23962056-23962075 | Msa0014950:intron | 40.0% | |
| AATCTTAGCACAGTGCCTAA+AGG | + | chr1_1:23962372-23962391 | None:intergenic | 40.0% | |
| GCGCATTATTGTGTGATATC+AGG | - | chr1_1:23962451-23962470 | Msa0014950:CDS | 40.0% | |
| ! | GGTCTTGAGTCTTGATTTTG+TGG | - | chr1_1:23962901-23962920 | Msa0014950:intron | 40.0% |
| ! | GTGGATGCTGATACTTTTGT+AGG | - | chr1_1:23962920-23962939 | Msa0014950:intron | 40.0% |
| TACTTTGGCATTACCATTGC+TGG | - | chr1_1:23962972-23962991 | Msa0014950:CDS | 40.0% | |
| ! | ATTACCATTGCTGGTTATCC+AGG | - | chr1_1:23962981-23963000 | Msa0014950:CDS | 40.0% |
| TCTTGCTTACTTGAAGAGCA+AGG | - | chr1_1:23963176-23963195 | Msa0014950:CDS | 40.0% | |
| ATGCAAAACTAAAGAGGCAG+GGG | - | chr1_1:23963392-23963411 | Msa0014950:CDS | 40.0% | |
| CTCCAGCATCAACCTATAAA+AGG | + | chr1_1:23963500-23963519 | None:intergenic | 40.0% | |
| GTGAATGATTGTCGCCAAAT+TGG | - | chr1_1:23963573-23963592 | Msa0014950:intron | 40.0% | |
| ! | ATAACTTGTCCTATTGTGCC+TGG | - | chr1_1:23963597-23963616 | Msa0014950:intron | 40.0% |
| AAGGGATTTATCCGTATGAC+TGG | - | chr1_1:23963642-23963661 | Msa0014950:intron | 40.0% | |
| CTAGATACCTGCTGAGATAA+TGG | - | chr1_1:23963890-23963909 | Msa0014950:CDS | 40.0% | |
| GCTTCTTCATTGTCCTTGAT+AGG | + | chr1_1:23963927-23963946 | None:intergenic | 40.0% | |
| AAGGCTTATGGAATACACCT+GGG | - | chr1_1:23963951-23963970 | Msa0014950:CDS | 40.0% | |
| ! | TTTTGCACATTTCAGTTCCC+AGG | + | chr1_1:23963971-23963990 | None:intergenic | 40.0% |
| ! | ATCTGCATTGGCGATTCTAA+TGG | - | chr1_1:23964046-23964065 | Msa0014950:intron | 40.0% |
| ! | ATTTTATTGCTTGCAGAGCC+TGG | - | chr1_1:23964452-23964471 | Msa0014950:intron | 40.0% |
| ! | TTTTATTGCTTGCAGAGCCT+GGG | - | chr1_1:23964453-23964472 | Msa0014950:intron | 40.0% |
| TGGATTCTTCAATTAAGCCC+AGG | + | chr1_1:23964473-23964492 | None:intergenic | 40.0% | |
| TCACACGGAAAACATTTGTC+GGG | + | chr1_1:23964524-23964543 | None:intergenic | 40.0% | |
| ! | AAGATGTTCGCCCAATCTTT+TGG | - | chr1_1:23964547-23964566 | Msa0014950:intron | 40.0% |
| ACAAGCATGCCTCTTATACT+TGG | + | chr1_1:23964603-23964622 | None:intergenic | 40.0% | |
| GCCCAAAAAGCTACATATCA+AGG | - | chr1_1:23964674-23964693 | Msa0014950:intron | 40.0% | |
| AGCTACATATCAAGGACCAT+AGG | - | chr1_1:23964682-23964701 | Msa0014950:intron | 40.0% | |
| ACATATCAAGGACCATAGGA+TGG | - | chr1_1:23964686-23964705 | Msa0014950:intron | 40.0% | |
| CATATCAAGGACCATAGGAT+GGG | - | chr1_1:23964687-23964706 | Msa0014950:intron | 40.0% | |
| CAGTTAATGCACCATATGAC+GGG | + | chr1_1:23964750-23964769 | None:intergenic | 40.0% | |
| TGGTGCATTAACTGACTATC+AGG | - | chr1_1:23964756-23964775 | Msa0014950:intron | 40.0% | |
| AACTGACTATCAGGTGCATA+TGG | - | chr1_1:23964765-23964784 | Msa0014950:intron | 40.0% | |
| !! | GAGATTCAGATTGTTTTGCC+TGG | - | chr1_1:23965035-23965054 | Msa0014950:intron | 40.0% |
| GAAAGTTGAGAACCAATCCT+TGG | - | chr1_1:23965058-23965077 | Msa0014950:intron | 40.0% | |
| ! | ATCAAGTTCTGACCAAGGAT+TGG | + | chr1_1:23965073-23965092 | None:intergenic | 40.0% |
| AATCCTTGGTCAGAACTTGA+TGG | - | chr1_1:23965072-23965091 | Msa0014950:intron | 40.0% | |
| AAAGATCATAAACGAGCACC+TGG | - | chr1_1:23965110-23965129 | Msa0014950:intron | 40.0% | |
| CTGGAGAAGATCAACACAAA+GGG | - | chr1_1:23965129-23965148 | Msa0014950:intron | 40.0% | |
| TCAGATTCTCCTATTGTAGG+TGG | - | chr1_1:23965195-23965214 | Msa0014950:intron | 40.0% | |
| CAGATTCTCCTATTGTAGGT+GGG | - | chr1_1:23965196-23965215 | Msa0014950:intron | 40.0% | |
| ! | TTTTTCCACCCACCTACAAT+AGG | + | chr1_1:23965207-23965226 | None:intergenic | 40.0% |
| CTGACATATTTACTAGGCTG+GGG | - | chr1_1:23965365-23965384 | Msa0014950:intron | 40.0% | |
| ! | TGCACTTGTTGAGAAATCCA+AGG | - | chr1_1:23965454-23965473 | Msa0014950:intron | 40.0% |
| AGTTAGGAATGGTCTATCCT+TGG | + | chr1_1:23965474-23965493 | None:intergenic | 40.0% | |
| ACAGCCATGTAAGTTAGGAA+TGG | + | chr1_1:23965485-23965504 | None:intergenic | 40.0% | |
| GGGATCTGGAAATCTAATGT+AGG | - | chr1_1:23965515-23965534 | Msa0014950:intron | 40.0% | |
| AAAGCTGACAGGATCTACAA+TGG | + | chr1_1:23965603-23965622 | None:intergenic | 40.0% | |
| ATCCAGGAAATTGGTTGAAG+AGG | - | chr1_1:23965694-23965713 | Msa0014950:intron | 40.0% | |
| AACCTCTTCAACCAATTTCC+TGG | + | chr1_1:23965699-23965718 | None:intergenic | 40.0% | |
| GAACTTGAACCATGACTCAA+AGG | + | chr1_1:23966005-23966024 | None:intergenic | 40.0% | |
| ! | TATGCCAATGGCGATCTTTT+TGG | - | chr1_1:23966280-23966299 | Msa0014950:CDS | 40.0% |
| TCAAAGGAATGAGCGTCAAT+GGG | + | chr1_1:23966539-23966558 | None:intergenic | 40.0% | |
| TTCAAAGGAATGAGCGTCAA+TGG | + | chr1_1:23966540-23966559 | None:intergenic | 40.0% | |
| ! | CAAACATCTCGTTGATAGAG+GGG | + | chr1_1:23966705-23966724 | None:intergenic | 40.0% |
| CTCAGGATTTGTGTAGTTGG+TGG | + | chr1_1:23961107-23961126 | None:intergenic | 45.0% | |
| ACCTTATGGTTACGGAGGAA+GGG | + | chr1_1:23961191-23961210 | None:intergenic | 45.0% | |
| TTTCCACCGAAAACCGAAGA+TGG | - | chr1_1:23961595-23961614 | Msa0014950:CDS | 45.0% | |
| ! | TCCACTCCATCTTCGGTTTT+CGG | + | chr1_1:23961604-23961623 | None:intergenic | 45.0% |
| ! | ACGGATTGTGTGCAACCATT+CGG | + | chr1_1:23961648-23961667 | None:intergenic | 45.0% |
| GCATGATCGATCTTATCGAC+CGG | + | chr1_1:23961793-23961812 | None:intergenic | 45.0% | |
| ACAAACTTCTCCTGTCCATG+AGG | + | chr1_1:23961874-23961893 | None:intergenic | 45.0% | |
| TCAGTAGTCATCTGCCAAGA+TGG | + | chr1_1:23962659-23962678 | None:intergenic | 45.0% | |
| CAAACCTGGATAACCAGCAA+TGG | + | chr1_1:23962988-23963007 | None:intergenic | 45.0% | |
| ! | GAGCAAATGATGGTGAGAAG+AGG | + | chr1_1:23963070-23963089 | None:intergenic | 45.0% |
| ! | TTTCTCTTCAGAGGCACATC+CGG | - | chr1_1:23963104-23963123 | Msa0014950:intron | 45.0% |
| AAATTCCCTGCAATACCCCT+TGG | + | chr1_1:23963428-23963447 | None:intergenic | 45.0% | |
| GGCATAATTCCAGGCACAAT+AGG | + | chr1_1:23963609-23963628 | None:intergenic | 45.0% | |
| AAAGCAGCCATTATCTCAGC+AGG | + | chr1_1:23963900-23963919 | None:intergenic | 45.0% | |
| GGACAATGAAGAAGCTGTCA+AGG | - | chr1_1:23963932-23963951 | Msa0014950:CDS | 45.0% | |
| GAAGAAGCTGTCAAGGCTTA+TGG | - | chr1_1:23963939-23963958 | Msa0014950:CDS | 45.0% | |
| CAAGGCTTATGGAATACACC+TGG | - | chr1_1:23963950-23963969 | Msa0014950:CDS | 45.0% | |
| GGCGAACATCTTCTTTCACA+CGG | + | chr1_1:23964539-23964558 | None:intergenic | 45.0% | |
| GCGATTTGCCCTACAATTGT+TGG | + | chr1_1:23964656-23964675 | None:intergenic | 45.0% | |
| ! | GATTGGTTCTCAACTTTCCC+AGG | + | chr1_1:23965056-23965075 | None:intergenic | 45.0% |
| ! | AGACCATCAAGTTCTGACCA+AGG | + | chr1_1:23965078-23965097 | None:intergenic | 45.0% |
| ! | CCTTTGTGTTGATCTTCTCC+AGG | + | chr1_1:23965131-23965150 | None:intergenic | 45.0% |
| CCTGGAGAAGATCAACACAA+AGG | - | chr1_1:23965128-23965147 | Msa0014950:intron | 45.0% | |
| !! | TGACTTTTCCCCATTGACTG+CGG | + | chr1_1:23965178-23965197 | None:intergenic | 45.0% |
| ATTCTCCTATTGTAGGTGGG+TGG | - | chr1_1:23965199-23965218 | Msa0014950:intron | 45.0% | |
| ACATATTTACTAGGCTGGGG+TGG | - | chr1_1:23965368-23965387 | Msa0014950:intron | 45.0% | |
| CTTAGAGTTCTTCTGCTCCA+AGG | - | chr1_1:23965421-23965440 | Msa0014950:intron | 45.0% | |
| ! | AAGTGCATCCAGCTTTTCCT+TGG | + | chr1_1:23965441-23965460 | None:intergenic | 45.0% |
| !! | TCACAGCATTGACATCGGTT+TGG | + | chr1_1:23965541-23965560 | None:intergenic | 45.0% |
| !! | CCATGTCACAGCATTGACAT+CGG | + | chr1_1:23965546-23965565 | None:intergenic | 45.0% |
| CGATGTCAATGCTGTGACAT+GGG | - | chr1_1:23965544-23965563 | Msa0014950:intron | 45.0% | |
| GATGTCAATGCTGTGACATG+GGG | - | chr1_1:23965545-23965564 | Msa0014950:intron | 45.0% | |
| ATGTCAATGCTGTGACATGG+GGG | - | chr1_1:23965546-23965565 | Msa0014950:intron | 45.0% | |
| CTGACAGGATCTACAATGGT+TGG | + | chr1_1:23965599-23965618 | None:intergenic | 45.0% | |
| ! | ATCCTGTCAGCTTTAACGTG+TGG | - | chr1_1:23965609-23965628 | Msa0014950:intron | 45.0% |
| TTCCACACGTTAAAGCTGAC+AGG | + | chr1_1:23965614-23965633 | None:intergenic | 45.0% | |
| ! | TGTCAGCTTTAACGTGTGGA+AGG | - | chr1_1:23965613-23965632 | Msa0014950:intron | 45.0% |
| CTTTAACGTGTGGAAGGATG+AGG | - | chr1_1:23965619-23965638 | Msa0014950:intron | 45.0% | |
| AGGATCTGTTTGATTCCCAG+AGG | - | chr1_1:23965776-23965795 | Msa0014950:intron | 45.0% | |
| GGATCTGTTTGATTCCCAGA+GGG | - | chr1_1:23965777-23965796 | Msa0014950:intron | 45.0% | |
| TTGGCTAGACCTTTGAGTCA+TGG | - | chr1_1:23965993-23966012 | Msa0014950:CDS | 45.0% | |
| CCATGAACTGGAACACTCTA+TGG | + | chr1_1:23966082-23966101 | None:intergenic | 45.0% | |
| ! | CCATAGAGTGTTCCAGTTCA+TGG | - | chr1_1:23966079-23966098 | Msa0014950:CDS | 45.0% |
| GTCGACAACGATTATGCCAA+TGG | - | chr1_1:23966268-23966287 | Msa0014950:CDS | 45.0% | |
| CACACCAAAAAGATCGCCAT+TGG | + | chr1_1:23966287-23966306 | None:intergenic | 45.0% | |
| !! | TGGCGATCTTTTTGGTGTGT+TGG | - | chr1_1:23966288-23966307 | Msa0014950:CDS | 45.0% |
| AACTTGACGAGCAACAGAAC+TGG | + | chr1_1:23966363-23966382 | None:intergenic | 45.0% | |
| CCTTATGGTTACGGAGGAAG+GGG | + | chr1_1:23961190-23961209 | None:intergenic | 50.0% | |
| CACCTTATGGTTACGGAGGA+AGG | + | chr1_1:23961192-23961211 | None:intergenic | 50.0% | |
| ATCGCACCTTATGGTTACGG+AGG | + | chr1_1:23961196-23961215 | None:intergenic | 50.0% | |
| ! | ACTCCATCTTCGGTTTTCGG+TGG | + | chr1_1:23961601-23961620 | None:intergenic | 50.0% |
| ACCGAAAACCGAAGATGGAG+TGG | - | chr1_1:23961600-23961619 | Msa0014950:CDS | 50.0% | |
| TGCGATATTACATGGGGAGC+TGG | - | chr1_1:23961673-23961692 | Msa0014950:intron | 50.0% | |
| GATATTACATGGGGAGCTGG+AGG | - | chr1_1:23961676-23961695 | Msa0014950:intron | 50.0% | |
| CAGAATGTGCTTGCGCTTAG+AGG | - | chr1_1:23961841-23961860 | Msa0014950:intron | 50.0% | |
| AACTTCTCCTGTCCATGAGG+CGG | + | chr1_1:23961871-23961890 | None:intergenic | 50.0% | |
| CAATAATGCGCAGCCATCCA+TGG | + | chr1_1:23962442-23962461 | None:intergenic | 50.0% | |
| GTCATCTGCCAAGATGGATC+AGG | + | chr1_1:23962653-23962672 | None:intergenic | 50.0% | |
| GAGGCACATCCGGATGTTAT+CGG | - | chr1_1:23963114-23963133 | Msa0014950:CDS | 50.0% | |
| CCATCAGCTCCGATAACATC+CGG | + | chr1_1:23963126-23963145 | None:intergenic | 50.0% | |
| CGGATGTTATCGGAGCTGAT+GGG | - | chr1_1:23963124-23963143 | Msa0014950:CDS | 50.0% | |
| ! | TGTTATCGGAGCTGATGGGT+TGG | - | chr1_1:23963128-23963147 | Msa0014950:CDS | 50.0% |
| !! | GGCTGCTTTAGAGCCTATCA+AGG | - | chr1_1:23963911-23963930 | Msa0014950:CDS | 50.0% |
| ATCCCAAATGCTCGAGCTGA+TGG | - | chr1_1:23964353-23964372 | Msa0014950:CDS | 50.0% | |
| TCCCAAATGCTCGAGCTGAT+GGG | - | chr1_1:23964354-23964373 | Msa0014950:CDS | 50.0% | |
| ACCCATCAGCTCGAGCATTT+GGG | + | chr1_1:23964358-23964377 | None:intergenic | 50.0% | |
| !! | TGGGTATTGGTCCCATCCTA+TGG | + | chr1_1:23964701-23964720 | None:intergenic | 50.0% |
| GATGGGACCAATACCCACAT+GGG | - | chr1_1:23964704-23964723 | Msa0014950:CDS | 50.0% | |
| AATCACTCCAACGCCCATGT+GGG | + | chr1_1:23964720-23964739 | None:intergenic | 50.0% | |
| GATTCCGGTAACCCGTCATA+TGG | - | chr1_1:23964736-23964755 | Msa0014950:CDS | 50.0% | |
| !! | TGCACCATATGACGGGTTAC+CGG | + | chr1_1:23964743-23964762 | None:intergenic | 50.0% |
| AGCTTCTTGTCCTTTGCACG+TGG | + | chr1_1:23964878-23964897 | None:intergenic | 50.0% | |
| !! | GACTTTTCCCCATTGACTGC+GGG | + | chr1_1:23965177-23965196 | None:intergenic | 50.0% |
| CTTCTGCTCCAAGGAAAAGC+TGG | - | chr1_1:23965430-23965449 | Msa0014950:intron | 50.0% | |
| CCGATGTCAATGCTGTGACA+TGG | - | chr1_1:23965543-23965562 | Msa0014950:intron | 50.0% | |
| TGTCAATGCTGTGACATGGG+GGG | - | chr1_1:23965547-23965566 | Msa0014950:intron | 50.0% | |
| GGCTGATGCATCCAGGAAAT+TGG | - | chr1_1:23965685-23965704 | Msa0014950:intron | 50.0% | |
| AGTGAATCGATCAGCCCTCT+GGG | + | chr1_1:23965794-23965813 | None:intergenic | 50.0% | |
| AAGTGAATCGATCAGCCCTC+TGG | + | chr1_1:23965795-23965814 | None:intergenic | 50.0% | |
| AGCTGACCAAGAAGTAGCTG+CGG | + | chr1_1:23966246-23966265 | None:intergenic | 50.0% | |
| CAGCTACTTCTTGGTCAGCT+TGG | - | chr1_1:23966246-23966265 | Msa0014950:CDS | 50.0% | |
| !! | AGTTGGTGGCACTGCCTTAC+CGG | + | chr1_1:23961093-23961112 | None:intergenic | 55.0% |
| ATGGTTACGGAGGAAGGGGA+GGG | + | chr1_1:23961186-23961205 | None:intergenic | 55.0% | |
| TATGGTTACGGAGGAAGGGG+AGG | + | chr1_1:23961187-23961206 | None:intergenic | 55.0% | |
| CCCCTTCCTCCGTAACCATA+AGG | - | chr1_1:23961187-23961206 | Msa0014950:three_prime_UTR | 55.0% | |
| CTTAGAGGTGATCCGCCTCA+TGG | - | chr1_1:23961856-23961875 | Msa0014950:intron | 55.0% | |
| GTTTGCGTGTGCGCGTGATT+TGG | - | chr1_1:23961909-23961928 | Msa0014950:intron | 55.0% | |
| ACTGCCTGCCTGATCCATCT+TGG | - | chr1_1:23962642-23962661 | Msa0014950:intron | 55.0% | |
| TCTGCCAAGATGGATCAGGC+AGG | + | chr1_1:23962649-23962668 | None:intergenic | 55.0% | |
| CCGGATGTTATCGGAGCTGA+TGG | - | chr1_1:23963123-23963142 | Msa0014950:CDS | 55.0% | |
| !! | AGCTGATGGGTTGGCTACAG+CGG | - | chr1_1:23963137-23963156 | Msa0014950:CDS | 55.0% |
| !! | TGCAGCCAAGGGGTATTGCA+GGG | - | chr1_1:23963420-23963439 | Msa0014950:intron | 55.0% |
| GATCATGGGTGCCCCAAAGA+AGG | - | chr1_1:23963744-23963763 | Msa0014950:intron | 55.0% | |
| TGCCACACTTCAAGCCCGAA+GGG | + | chr1_1:23964225-23964244 | None:intergenic | 55.0% | |
| TTGCCACACTTCAAGCCCGA+AGG | + | chr1_1:23964226-23964245 | None:intergenic | 55.0% | |
| CACCCATCAGCTCGAGCATT+TGG | + | chr1_1:23964359-23964378 | None:intergenic | 55.0% | |
| ACATTTGTCGGGCGTCTCCA+AGG | + | chr1_1:23964513-23964532 | None:intergenic | 55.0% | |
| GGATGGGACCAATACCCACA+TGG | - | chr1_1:23964703-23964722 | Msa0014950:CDS | 55.0% | |
| ACCAATACCCACATGGGCGT+TGG | - | chr1_1:23964710-23964729 | Msa0014950:CDS | 55.0% | |
| TCCAACGCCCATGTGGGTAT+TGG | + | chr1_1:23964714-23964733 | None:intergenic | 55.0% | |
| GAATCACTCCAACGCCCATG+TGG | + | chr1_1:23964721-23964740 | None:intergenic | 55.0% | |
| !! | CATGGGCGTTGGAGTGATTC+CGG | - | chr1_1:23964721-23964740 | Msa0014950:CDS | 55.0% |
| GTTCATGCGACCACGTGCAA+AGG | - | chr1_1:23964865-23964884 | Msa0014950:intron | 55.0% | |
| AATAGCCAGCCCGCAGTCAA+TGG | - | chr1_1:23965165-23965184 | Msa0014950:intron | 55.0% | |
| ATAGCCAGCCCGCAGTCAAT+GGG | - | chr1_1:23965166-23965185 | Msa0014950:intron | 55.0% | |
| ATGGGCGAGCTTATACCCTG+AGG | - | chr1_1:23965664-23965683 | Msa0014950:intron | 55.0% | |
| TCCTGGATGCATCAGCCTCA+GGG | + | chr1_1:23965682-23965701 | None:intergenic | 55.0% | |
| TTCCTGGATGCATCAGCCTC+AGG | + | chr1_1:23965683-23965702 | None:intergenic | 55.0% | |
| AGGTGATCCGCCTCATGGAC+AGG | - | chr1_1:23961861-23961880 | Msa0014950:intron | 60.0% | |
| !! | GATGGGTTGGCTACAGCGGA+AGG | - | chr1_1:23963141-23963160 | Msa0014950:CDS | 60.0% |
| !! | CTGCAGCCAAGGGGTATTGC+AGG | - | chr1_1:23963419-23963438 | Msa0014950:intron | 60.0% |
| AGCCCTTCGGGCTTGAAGTG+TGG | - | chr1_1:23964220-23964239 | Msa0014950:CDS | 60.0% | |
| TGTCGGGCGTCTCCAAGGTA+AGG | + | chr1_1:23964508-23964527 | None:intergenic | 60.0% | |
| !! | CGGGCTGGCTATTGATGGTG+AGG | + | chr1_1:23965158-23965177 | None:intergenic | 60.0% |
| !! | GACTGCGGGCTGGCTATTGA+TGG | + | chr1_1:23965163-23965182 | None:intergenic | 60.0% |
| TAGCCAGCCCGCAGTCAATG+GGG | - | chr1_1:23965167-23965186 | Msa0014950:intron | 60.0% | |
| ! | TTTCCCCATTGACTGCGGGC+TGG | + | chr1_1:23965173-23965192 | None:intergenic | 60.0% |
| TTACTAGGCTGGGGTGGACC+TGG | - | chr1_1:23965374-23965393 | Msa0014950:intron | 60.0% | |
| ATGGGGGGTCTTCCCAGCTA+AGG | - | chr1_1:23965562-23965581 | Msa0014950:intron | 60.0% | |
| ACCCTGAGGCTGATGCATCC+AGG | - | chr1_1:23965678-23965697 | Msa0014950:intron | 60.0% | |
| ! | GGTTGGCCGCAGCTACTTCT+TGG | - | chr1_1:23966237-23966256 | Msa0014950:CDS | 60.0% |
| AGGGCAGAGCGCGGAATGAG+AGG | + | chr1_1:23961167-23961186 | None:intergenic | 65.0% | |
| CAGGGGTGAGCTGCAGCCAA+GGG | - | chr1_1:23963409-23963428 | Msa0014950:intron | 65.0% | |
| AGGGGTGAGCTGCAGCCAAG+GGG | - | chr1_1:23963410-23963429 | Msa0014950:intron | 65.0% | |
| GCTCTAGCGTTGCGGGAAGG+GGG | + | chr1_1:23964203-23964222 | None:intergenic | 65.0% | |
| ! | GGCTCTAGCGTTGCGGGAAG+GGG | + | chr1_1:23964204-23964223 | None:intergenic | 65.0% |
| ! | GGGCTCTAGCGTTGCGGGAA+GGG | + | chr1_1:23964205-23964224 | None:intergenic | 65.0% |
| ! | AGGGCTCTAGCGTTGCGGGA+AGG | + | chr1_1:23964206-23964225 | None:intergenic | 65.0% |
| ! | CCGAAGGGCTCTAGCGTTGC+GGG | + | chr1_1:23964210-23964229 | None:intergenic | 65.0% |
| CCCGCAACGCTAGAGCCCTT+CGG | - | chr1_1:23964207-23964226 | Msa0014950:CDS | 65.0% | |
| ! | CCCGAAGGGCTCTAGCGTTG+CGG | + | chr1_1:23964211-23964230 | None:intergenic | 65.0% |
| CCGCAACGCTAGAGCCCTTC+GGG | - | chr1_1:23964208-23964227 | Msa0014950:CDS | 65.0% | |
| AGGAAGGGGAGGGCAGAGCG+CGG | + | chr1_1:23961176-23961195 | None:intergenic | 70.0% | |
| GCAGGGGTGAGCTGCAGCCA+AGG | - | chr1_1:23963408-23963427 | Msa0014950:intron | 70.0% | |
| CTAGGCTGGGGTGGACCTGG+TGG | - | chr1_1:23965377-23965396 | Msa0014950:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 23961068 | 23966818 | 23961068 | ID=Msa0014950;Name=Msa0014950 |
| chr1_1 | mRNA | 23961068 | 23966818 | 23961068 | ID=Msa0014950-mRNA-1;Parent=Msa0014950;Name=Msa0014950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=177|1|1|1|0.90|0.83|12|497|595 |
| chr1_1 | exon | 23961068 | 23961648 | 23961068 | ID=Msa0014950-mRNA-1:exon:8302;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23962171 | 23962505 | 23962171 | ID=Msa0014950-mRNA-1:exon:8301;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23962673 | 23962850 | 23962673 | ID=Msa0014950-mRNA-1:exon:8300;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23962940 | 23963020 | 23962940 | ID=Msa0014950-mRNA-1:exon:8299;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23963109 | 23963220 | 23963109 | ID=Msa0014950-mRNA-1:exon:8298;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23963318 | 23963418 | 23963318 | ID=Msa0014950-mRNA-1:exon:8297;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23963819 | 23963992 | 23963819 | ID=Msa0014950-mRNA-1:exon:8296;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23964206 | 23964379 | 23964206 | ID=Msa0014950-mRNA-1:exon:8295;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23964689 | 23964771 | 23964689 | ID=Msa0014950-mRNA-1:exon:8294;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23964884 | 23964944 | 23964884 | ID=Msa0014950-mRNA-1:exon:8293;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23965956 | 23966396 | 23965956 | ID=Msa0014950-mRNA-1:exon:8292;Parent=Msa0014950-mRNA-1 |
| chr1_1 | exon | 23966678 | 23966818 | 23966678 | ID=Msa0014950-mRNA-1:exon:8291;Parent=Msa0014950-mRNA-1 |
| chr1_1 | five_prime_UTR | 23966678 | 23966818 | 23966678 | ID=Msa0014950-mRNA-1:five_prime_utr;Parent=Msa0014950-mRNA-1 |
| chr1_1 | five_prime_UTR | 23966361 | 23966396 | 23966361 | ID=Msa0014950-mRNA-1:five_prime_utr;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23965956 | 23966360 | 23965956 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23964884 | 23964944 | 23964884 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23964689 | 23964771 | 23964689 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23964206 | 23964379 | 23964206 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23963819 | 23963992 | 23963819 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23963318 | 23963418 | 23963318 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23963109 | 23963220 | 23963109 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23962940 | 23963020 | 23962940 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23962673 | 23962850 | 23962673 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23962171 | 23962505 | 23962171 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | CDS | 23961565 | 23961648 | 23961565 | ID=Msa0014950-mRNA-1:cds;Parent=Msa0014950-mRNA-1 |
| chr1_1 | three_prime_UTR | 23961068 | 23961564 | 23961068 | ID=Msa0014950-mRNA-1:three_prime_utr;Parent=Msa0014950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
