AlfalfaGEDB | Msa1028350

M. sativa cultivar zhongmu-4 / Msa1028350

KEGG: K20476
GO: -
PFAM: PF07064.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028350	XP_003624005.2	97.110	1142	14	1	1	1142	1	1123	0.0	2272

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028350	sp\|Q69ZJ7\|RIC1_MOUSE	24.731	1209	679	36	1	1069	1	1118	1.30e-71	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028350	Q2HUD0	97.110	1142	14	1	1	1142	1	1123	0.0	2272

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa1028350	0.810370	1.192355e-50	-8.615850e-47
Msa0008220	Msa1028350	0.800002	1.767794e-48	-8.615850e-47
Msa0012220	Msa1028350	0.829113	6.173643e-55	-8.615850e-47
Msa0014950	Msa1028350	0.817870	2.635052e-52	-8.615850e-47
Msa0031820	Msa1028350	0.819750	9.856081e-53	-8.615850e-47
Msa0032320	Msa1028350	0.824452	8.011190e-54	-8.615850e-47
Msa0039250	Msa1028350	0.824580	7.471745e-54	-8.615850e-47
Msa0052870	Msa1028350	0.801007	1.102966e-48	-8.615850e-47
Msa0056450	Msa1028350	0.825369	4.867828e-54	-8.615850e-47
Msa0057370	Msa1028350	0.806802	6.892501e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028350	MtrunA17_Chr7g0248111	97.110	1142	14	1	1	1142	1	1123	0.0	2272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028350	AT3G61480.2	73.362	1145	271	9	1	1140	1	1116	0.0	1686
Msa1028350	AT5G28350.1	73.077	1144	280	6	1	1140	1	1120	0.0	1677
Msa1028350	AT3G61480.1	70.954	1143	258	10	3	1140	1	1074	0.0	1603
Msa1028350	AT5G28350.2	70.717	1144	267	7	1	1140	1	1080	0.0	1601
Msa1028350	AT5G28442.1	71.622	74	20	1	1	74	1	73	9.58e-28	108

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Find 299 sgRNAs with CRISPR-Local

Find 730 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCGGATAAGATCAC+AGG	0.538245	7_1:-61088099	None:intergenic
AAACCATGCAAGTTACTTGA+TGG	0.406173	7_1:+61089524	Msa1028350:CDS
AAACTGGCCTGTTCAATATG+TGG	0.573052	7_1:+61084980	Msa1028350:CDS
AAACTGTCTCCTCGATTTCT+AGG	0.296872	7_1:+61089313	Msa1028350:CDS
AAAGAATTGGGACCTGGAGA+TGG	0.517815	7_1:-61086444	None:intergenic
AAATCGCATGTTACAAAGTG+TGG	0.527790	7_1:-61091651	None:intergenic
AACCAATATATACAGATGGA+TGG	0.558576	7_1:-61091695	None:intergenic
AAGAACTTAAACCTATTTGA+CGG	0.419177	7_1:-61084581	None:intergenic
AAGAAGATGTATATGGCATA+TGG	0.446464	7_1:+61080898	Msa1028350:exon
AAGCTTGTAGCATTTGTAAA+AGG	0.300184	7_1:+61089564	Msa1028350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGATTGATGGAAATGT+GGG	-	chr7_1:61080819-61080838	None:intergenic	30.0%
ATTGAAGATTGATGGAAATG+TGG	-	chr7_1:61080820-61080839	None:intergenic	30.0%
ATAGATCGAGAATTTGTAGA+GGG	-	chr7_1:61080844-61080863	None:intergenic	30.0%
AAGAAGATGTATATGGCATA+TGG	+	chr7_1:61080898-61080917	Msa1028350:exon	30.0%
GATAATTCTGATATGGGTTT+GGG	+	chr7_1:61081113-61081132	Msa1028350:intron	30.0%
TTTGTGGAAAATGTTGAAGT+GGG	+	chr7_1:61081252-61081271	Msa1028350:intron	30.0%
AACTCGCAAGCATATTATAA+GGG	-	chr7_1:61081707-61081726	None:intergenic	30.0%
AAACTCGCAAGCATATTATA+AGG	-	chr7_1:61081708-61081727	None:intergenic	30.0%
GGTTTAAAAAATGGAATACG+AGG	+	chr7_1:61081751-61081770	Msa1028350:intron	30.0%
TGATGATAGAAAACATTTGG+AGG	-	chr7_1:61081928-61081947	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	61080733	61091786	61080733	ID=Msa1028350;Name=Msa1028350
chr7_1	mRNA	61080733	61091786	61080733	ID=Msa1028350-mRNA-1;Parent=Msa1028350;Name=Msa1028350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=171\|0.95\|0.95\|1\|1\|1\|23\|476\|1142
chr7_1	exon	61080733	61081050	61080733	ID=Msa1028350-mRNA-1:exon:12836;Parent=Msa1028350-mRNA-1
chr7_1	exon	61081356	61081463	61081356	ID=Msa1028350-mRNA-1:exon:12837;Parent=Msa1028350-mRNA-1
chr7_1	exon	61082388	61082536	61082388	ID=Msa1028350-mRNA-1:exon:12838;Parent=Msa1028350-mRNA-1
chr7_1	exon	61083453	61083534	61083453	ID=Msa1028350-mRNA-1:exon:12839;Parent=Msa1028350-mRNA-1
chr7_1	exon	61083705	61084120	61083705	ID=Msa1028350-mRNA-1:exon:12840;Parent=Msa1028350-mRNA-1
chr7_1	exon	61084449	61084881	61084449	ID=Msa1028350-mRNA-1:exon:12841;Parent=Msa1028350-mRNA-1
chr7_1	exon	61084963	61085186	61084963	ID=Msa1028350-mRNA-1:exon:12842;Parent=Msa1028350-mRNA-1
chr7_1	exon	61085476	61085671	61085476	ID=Msa1028350-mRNA-1:exon:12843;Parent=Msa1028350-mRNA-1
chr7_1	exon	61085823	61085968	61085823	ID=Msa1028350-mRNA-1:exon:12844;Parent=Msa1028350-mRNA-1
chr7_1	exon	61086120	61086294	61086120	ID=Msa1028350-mRNA-1:exon:12845;Parent=Msa1028350-mRNA-1
chr7_1	exon	61086435	61086488	61086435	ID=Msa1028350-mRNA-1:exon:12846;Parent=Msa1028350-mRNA-1
chr7_1	exon	61086814	61086993	61086814	ID=Msa1028350-mRNA-1:exon:12847;Parent=Msa1028350-mRNA-1
chr7_1	exon	61087262	61087374	61087262	ID=Msa1028350-mRNA-1:exon:12848;Parent=Msa1028350-mRNA-1
chr7_1	exon	61088037	61088270	61088037	ID=Msa1028350-mRNA-1:exon:12849;Parent=Msa1028350-mRNA-1
chr7_1	exon	61088752	61088809	61088752	ID=Msa1028350-mRNA-1:exon:12850;Parent=Msa1028350-mRNA-1
chr7_1	exon	61088951	61089010	61088951	ID=Msa1028350-mRNA-1:exon:12851;Parent=Msa1028350-mRNA-1
chr7_1	exon	61089106	61089147	61089106	ID=Msa1028350-mRNA-1:exon:12852;Parent=Msa1028350-mRNA-1
chr7_1	exon	61089253	61089383	61089253	ID=Msa1028350-mRNA-1:exon:12853;Parent=Msa1028350-mRNA-1
chr7_1	exon	61089470	61089605	61089470	ID=Msa1028350-mRNA-1:exon:12854;Parent=Msa1028350-mRNA-1
chr7_1	exon	61089699	61089776	61089699	ID=Msa1028350-mRNA-1:exon:12855;Parent=Msa1028350-mRNA-1
chr7_1	exon	61090297	61090413	61090297	ID=Msa1028350-mRNA-1:exon:12856;Parent=Msa1028350-mRNA-1
chr7_1	exon	61091061	61091123	61091061	ID=Msa1028350-mRNA-1:exon:12857;Parent=Msa1028350-mRNA-1
chr7_1	exon	61091224	61091786	61091224	ID=Msa1028350-mRNA-1:exon:12858;Parent=Msa1028350-mRNA-1
chr7_1	five_prime_UTR	61080733	61080903	61080733	ID=Msa1028350-mRNA-1:five_prime_utr;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61080904	61081050	61080904	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61081356	61081463	61081356	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61082388	61082536	61082388	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61083453	61083534	61083453	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61083705	61084120	61083705	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61084449	61084881	61084449	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61084963	61085186	61084963	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61085476	61085671	61085476	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61085823	61085968	61085823	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61086120	61086294	61086120	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61086435	61086488	61086435	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61086814	61086993	61086814	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61087262	61087374	61087262	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61088037	61088270	61088037	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61088752	61088809	61088752	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61088951	61089010	61088951	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61089106	61089147	61089106	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61089253	61089383	61089253	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61089470	61089605	61089470	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61089699	61089776	61089699	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61090297	61090413	61090297	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61091061	61091123	61091061	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	CDS	61091224	61091310	61091224	ID=Msa1028350-mRNA-1:cds;Parent=Msa1028350-mRNA-1
chr7_1	three_prime_UTR	61091311	61091786	61091311	ID=Msa1028350-mRNA-1:three_prime_utr;Parent=Msa1028350-mRNA-1

Gene Sequence

>Msa1028350

ATGTATATGGCATATGGATGGCCTCAGGTCATCCCTCTAGACCAAGGACTGTCTCCTTCTGAGCACAAGATTGTTTATTTCAAACTCATCAATCGTTTGTTGTTAATTGTTTCCCCTACTCACTTTGAACTTTGGAGCTCTTCCCAGCATAGAGTGAGATTGGGGAAGTACAAGAGAGATTCAGATTCATTGAAGAGAGAAGGAGAAAACTTGCAGGCTGTGTGGAGTCCTGATGCTAAATTAATTGCTATTCTTACATCTTCTTTCTATCTTCACATTTTCAAGGTCCAATTTTTGGATAAAAAAATATACATTGGTGGGAAACAACCTTCTGCTTTGTGCCTAGCTACCATATCTCTTCTTCTTTCTGAGCAAGTTCCTTTTGCAGCAAAGGATTTGTCAGTGAGCAATATTGTTTGTGATAACAAACATATGCTGCTTGGACTTTCCGATGGAACTTTGTACAGTATGTCTTGGAAGGGGGAGTTCTATGGAGCTTTCCAATTTGATCCACATCCTTCTGCTAGCTTTGACGATTCTCAATTACCACATCCGTTAGAGAATGGTCTTTCTCCTAAAGGCCTCCCAAAGGTTTCTACGCCCAATCACATTCTTCCCAGAAATTCTGAAATCAAGCATCTAGAACTTTGCCTTTCATTGAGGTTGCTATTTGTCTTGTACTCTGATGGGCAACTTGTGTCATGTTCCATTAGTAAGAAAGGGTTAAAGCAAGTTGACTGTATTAAAGCAGAAAAGAGGTTGGCTTGTGGAGATGCTGTATGTGCTTCAGCAGCTCTTGAGCAGGAAATTCTTGCTGTTGGTACCAGAAGAGGAATAGTGGAGTTGTATGATTTGGCTGAATCAACATCGCTTATTCGCACAGTTTCTTTGTATGACTGGGGATTTTTGATGGATGACACTGGCCCTGTTAGTTGCATTGCATGGACACCTGATAATTCTGCTTTTGCCGTTGGGTGGAAGTTAAGGGGGCTTACAGTTTGGTCTGTTTCCGGGTGTCGCTTGATGTCAACAATCCGTCAAATAGGTTTAAGTTCTTTATCTTCTCCAATTGCTAAGCCAAACCATGATTGTAAGTATGAGCCATTGATGGGTGGCACCTCACTGATGCAATGGGATGAACATGGATATAGACTTTATGCTATCGAGGAGAAATCTTCAGAGAGAATTATTTCATTCTCTTTTGGAAAATGCTGTCTTAGCAGAGGTGTTTCTGGCACTACATACACCCGACAAGTGATTTATGGTGAAGACAGGTTGCTCATCGTGCAGTCAGAAGAGATTGACGAGCTTAAAATGCTGCATCTTAAGCTTCCAGTTTCTTATATTTCCCAAAACTGGCCTGTTCAATATGTGGCAGCTAGTCAGGACGGAATGTACTTAGCGGTTGCTGGTCTTCATGGTTTGATATTGTATGATATACGAATGAAAAGATGGAGAGTCTTTGGAGATGTTACCCAGGAACAAAAGATTCAGTGTAAGGGCTTGCTATGGCTGGGAAAGATTGTTGTTGTCTGCAACTATATTGATTCTTCCAACACGTATGAATTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCATTGCTCTGTCGAAAACCATTGTTTGCAAAACCAATTGTGATGGATGTGTACCAAGATTATATACTTGTTACGTATAGACCATTTGATGTCCATATATTCCATGTGAAATTATTCGGTGAATTAACTCCTTCAGGAAATCCTGATTTACAGCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCTGCAATGCGATTCATTCCTGATCAACTCCCAAGAGAACTGATTTCAAAAAATTACATTTCATCTTCATCAGATTCATTAACAGCAGAACCAGCCAGGTGTTTGATATTGAGGTCAAATGGGGAGCTTTCGCTTCTTGATTTGGATGATGGACGGGAGAGAAATCTTACTGATTCAGTTGAGCTTTTTTGGGTCACTTGTGGCCAGTCTGAGGATAAAACAAATTTAATTGAGGAAGTTTCATGGTTAGATTATGGCCATCGGGGTATGCAGGTTTGGTATCCATCTCCAGGTCCCAATTCTTTTAAGCAGGAGGATTTCTTGCAGTTGGATCCAGAACTGGAGTTTGATCGTGAAGTATACCCTCTGGGACTTCTTCCAAATGCCGGTGTAGTTGTTGGTGTTTCCCAGAGAATGTCATTTCCATCAAGTGCAGAATTCCCATGTTTTGAGCCATCTCCTCAAGCACAAACTATACTGCACTGCCTACTGCGCCATCTTCTTCAGAGGGACAAAATTGAGGAAGCTTTAAGGCTGGCAGAACTATCAGCAGAAAAACCCCATTTTTCTCATTGTCTAGAGTGGCTTCTTTTTACAGTTTTTGAAGCAGATATATCCAGGCCAAATGTAAACAAGAACCAGGTTTCAGTTCTTAAATATGCAAAAACTCTTTTGGAGAAGACCTGTGATCTTATCCGAAATTTTCCAGAGTACCTAGATGTTGTTGTCAGTGTTGCAAGAAAAACAGATGGTCGTCATTGGGCAGATTTGTTCTCTGCTGCTGGAAGATCAACAGAGTATGTCTTTCAAACATCTATGCTCTTCATTTTGATTTCATCGTTGATTAATATTGGATTGTTTGAAGAATGTTTTCAACGTAGATGGTACCGCACTGCAGCTTGCTATATACTTGTAATTGCCAAACTCGAGGGTCCTGCTGTGAGCCAGTACTGTGCTTTACGGTTATTACAGGCAACACTCGTTGATTCTTTATATGAGCTTGCTGGGGAGCTGGTGAGGTTCTTACTAAGATCTGGTAGGGAGTATGACCAAGCATCATCAGCTGATTCAGATAAACTGTCTCCTCGATTTCTAGGCTATTTTCTTTTTCGTTCTGCTGAGCGAAAGCAAGCATTGGATAAAAGCACCTCATTCAAGGAACAAAGTGCTCATGTCACCTCAGTTAAGAATATTTTAGAAAACCATGCAAGTTACTTGATGGCTGGGAAAGAGCTCTCCAAGCTTGTAGCATTTGTAAAAGGCACTCAGTTTGATTTAGTGGAATATCTACAACGCGAAAGGTATGGAAGTGCTCGGCTGGAGAATTTCGCTTCCGGGCTTGAACTAATAAGCCAAAAGCTTCAAATGGAAACATTACAGAGTCGATTGGATGCGGACTTTCTCCTGGCTCATATGTGCTCTGTCAAATTTAAGGAATGGATAGTTGTTCTGGCTACTCTCTTGAGACGTTCTGAGGTTCTTTTTGACTTATTCCGTCATGATTTTCGGTTATGGAAAGCCTACAGCAGCACCCTGCAGTCACACCCAGCCTTTACTGAATATCAAGATTTATTGGAAGACCTGGAAGATAAACTTTCATCTGTTGCAAACGAGGAAGAAAAATGA

Protein sequence

>Msa1028350

MYMAYGWPQVIPLDQGLSPSEHKIVYFKLINRLLLIVSPTHFELWSSSQHRVRLGKYKRDSDSLKREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIYIGGKQPSALCLATISLLLSEQVPFAAKDLSVSNIVCDNKHMLLGLSDGTLYSMSWKGEFYGAFQFDPHPSASFDDSQLPHPLENGLSPKGLPKVSTPNHILPRNSEIKHLELCLSLRLLFVLYSDGQLVSCSISKKGLKQVDCIKAEKRLACGDAVCASAALEQEILAVGTRRGIVELYDLAESTSLIRTVSLYDWGFLMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSLSSPIAKPNHDCKYEPLMGGTSLMQWDEHGYRLYAIEEKSSERIISFSFGKCCLSRGVSGTTYTRQVIYGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQYVAASQDGMYLAVAGLHGLILYDIRMKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKPLFAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTAKSHPAAMRFIPDQLPRELISKNYISSSSDSLTAEPARCLILRSNGELSLLDLDDGRERNLTDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGPNSFKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFPSSAEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRLAELSAEKPHFSHCLEWLLFTVFEADISRPNVNKNQVSVLKYAKTLLEKTCDLIRNFPEYLDVVVSVARKTDGRHWADLFSAAGRSTEYVFQTSMLFILISSLINIGLFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLVDSLYELAGELVRFLLRSGREYDQASSADSDKLSPRFLGYFLFRSAERKQALDKSTSFKEQSAHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLFRHDFRLWKAYSSTLQSHPAFTEYQDLLEDLEDKLSSVANEEEK*