Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015780 | sp|O48905|MDHC_MEDSA | 91.867 | 332 | 0 | 1 | 1 | 305 | 1 | 332 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015780 | Msa0156310 | 0.941953 | 1.690639e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015780 | MtrunA17_Chr1g0167651 | 91.265 | 332 | 2 | 1 | 1 | 305 | 1 | 332 | 0.0 | 609 |
| Msa0015780 | MtrunA17_Chr1g0187751 | 86.747 | 332 | 17 | 1 | 1 | 305 | 1 | 332 | 0.0 | 561 |
| Msa0015780 | MtrunA17_Chr8g0334691 | 78.571 | 308 | 39 | 1 | 24 | 304 | 1 | 308 | 6.91e-170 | 473 |
| Msa0015780 | MtrunA17_Chr1g0197371 | 37.538 | 325 | 177 | 4 | 3 | 301 | 92 | 416 | 2.01e-63 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015780 | AT1G04410.1 | 83.434 | 332 | 28 | 1 | 1 | 305 | 1 | 332 | 0.0 | 545 |
| Msa0015780 | AT5G43330.1 | 83.735 | 332 | 27 | 1 | 1 | 305 | 1 | 332 | 0.0 | 543 |
| Msa0015780 | AT5G56720.1 | 69.277 | 332 | 75 | 1 | 1 | 305 | 40 | 371 | 7.70e-166 | 466 |
| Msa0015780 | AT5G58330.1 | 39.692 | 325 | 170 | 5 | 3 | 301 | 97 | 421 | 2.38e-68 | 219 |
| Msa0015780 | AT5G58330.2 | 39.692 | 325 | 170 | 5 | 3 | 301 | 96 | 420 | 3.20e-68 | 219 |
| Msa0015780 | AT5G58330.3 | 39.550 | 311 | 162 | 5 | 17 | 301 | 2 | 312 | 2.23e-65 | 209 |
Find 96 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAATCTTTCGGAAATT+TGG | 0.094023 | 1_1:+25874825 | None:intergenic |
| CACATTCGCGATTGGGTTCT+TGG | 0.190578 | 1_1:-25874206 | Msa0015780:CDS |
| GCTGCATTTCCACTTCTTAA+AGG | 0.217111 | 1_1:-25876558 | Msa0015780:intron |
| AAACAAGAAATGTTTCTTTC+TGG | 0.220813 | 1_1:+25874878 | None:intergenic |
| ATTGCAAGTCTAACAGATTT+TGG | 0.240561 | 1_1:-25873129 | Msa0015780:three_prime_UTR |
| GTCATTGAATGGAGTTAAAA+TGG | 0.260659 | 1_1:-25876592 | Msa0015780:CDS |
| AACTATGAGTGTCTCGTCTT+TGG | 0.302447 | 1_1:-25873162 | Msa0015780:three_prime_UTR |
| GAAATGAAGGGAATCGAAAA+TGG | 0.319443 | 1_1:+25877663 | None:intergenic |
| GCTGACCGAGGAAAAGAATT+TGG | 0.319960 | 1_1:-25873273 | Msa0015780:CDS |
| ATGTAAAGAATGTCATAATC+TGG | 0.320654 | 1_1:-25874790 | Msa0015780:CDS |
| ATGTTTCTTTCTGGAATAGA+TGG | 0.330607 | 1_1:+25874887 | None:intergenic |
| AACTTGAACATTCAATCTTT+CGG | 0.331338 | 1_1:+25874817 | None:intergenic |
| AAGAACACGAACTGGGTCTT+TGG | 0.339916 | 1_1:+25877629 | None:intergenic |
| TGTCAAATTTCAGGGCAAAT+TGG | 0.341571 | 1_1:-25876708 | Msa0015780:intron |
| ACGTGGTGCTGCAATTATTA+AGG | 0.343639 | 1_1:-25874276 | Msa0015780:CDS |
| GGCTCACTCTTGCCTCTCTT+AGG | 0.351901 | 1_1:-25873252 | Msa0015780:exon |
| ATCAATGCATTGGTGTTTGC+TGG | 0.355483 | 1_1:+25874926 | None:intergenic |
| TGACTAGACTAGATCACAAT+AGG | 0.357382 | 1_1:-25874856 | Msa0015780:CDS |
| ACTAGATCACAATAGGGCTT+TGG | 0.385573 | 1_1:-25874849 | Msa0015780:CDS |
| CAAGAATTTCGATGTTTGTT+GGG | 0.389434 | 1_1:-25873092 | Msa0015780:three_prime_UTR |
| CTAGATCACAATAGGGCTTT+GGG | 0.392356 | 1_1:-25874848 | Msa0015780:CDS |
| CTTGTGACCACATTCGCGAT+TGG | 0.397092 | 1_1:-25874214 | Msa0015780:CDS |
| TGTTTGTGTTGTGTGATTTG+TGG | 0.402765 | 1_1:+25877742 | None:intergenic |
| ATAGTTCATTTGTATCTAGA+AGG | 0.405518 | 1_1:+25873179 | None:intergenic |
| TCCCTTCATTTCATCACAAA+TGG | 0.412693 | 1_1:-25877652 | Msa0015780:exon |
| TGAAGAATCACGGGTTGATC+AGG | 0.412959 | 1_1:+25876642 | None:intergenic |
| GTGATTGAGTATCATGCAAT+TGG | 0.418075 | 1_1:-25873028 | Msa0015780:three_prime_UTR |
| TTGTGACCACATTCGCGATT+GGG | 0.424378 | 1_1:-25874213 | Msa0015780:CDS |
| ATCACTCCCCTAGCAATCAT+AGG | 0.425010 | 1_1:+25876672 | None:intergenic |
| TTAGGGTACCTTCGTTTCAA+TGG | 0.430895 | 1_1:-25874090 | Msa0015780:intron |
| CACCAATGCATTGATCTTGA+AGG | 0.441335 | 1_1:-25874918 | Msa0015780:CDS |
| AAAAGAAGGTATGGAGAGGA+AGG | 0.445651 | 1_1:-25876324 | Msa0015780:CDS |
| ACAAGAATTTCGATGTTTGT+TGG | 0.449090 | 1_1:-25873093 | Msa0015780:three_prime_UTR |
| CCAGTTCGTGTTCTTGTCAC+TGG | 0.450164 | 1_1:-25877621 | Msa0015780:CDS |
| CTCTTGTCCCTATGATTGCT+AGG | 0.451223 | 1_1:-25876680 | Msa0015780:CDS |
| CCAGTGACAAGAACACGAAC+TGG | 0.452334 | 1_1:+25877621 | None:intergenic |
| TAGGGTACCTTCGTTTCAAT+GGG | 0.465774 | 1_1:-25874089 | Msa0015780:CDS |
| TGTTTCGGAGAGAGTGAGTG+AGG | 0.473470 | 1_1:+25877716 | None:intergenic |
| CAATCCAGATGGTACATTGT+AGG | 0.475070 | 1_1:+25874049 | None:intergenic |
| TCACCATTGGCACAGGTGAC+AGG | 0.479094 | 1_1:+25874014 | None:intergenic |
| GGTTCCTACAATGTACCATC+TGG | 0.482781 | 1_1:-25874053 | Msa0015780:CDS |
| TTGGGTTCTTGGAACTCCCC+AGG | 0.483482 | 1_1:-25874195 | Msa0015780:intron |
| TGTAAAGAATGTCATAATCT+GGG | 0.486354 | 1_1:-25874789 | Msa0015780:CDS |
| CTAAATTCATAATTAACAGT+TGG | 0.487425 | 1_1:+25872988 | None:intergenic |
| TGAGTTCTCAAGGAAGAAGT+TGG | 0.488677 | 1_1:-25873312 | Msa0015780:CDS |
| GGCCATTTGTGATGAAATGA+AGG | 0.488889 | 1_1:+25877650 | None:intergenic |
| CCATTCAATGACTCTGCTGC+AGG | 0.499494 | 1_1:+25876603 | None:intergenic |
| GGTGAATGGAAAATAGTTCA+AGG | 0.505213 | 1_1:-25873996 | Msa0015780:intron |
| TTCCTTCAAGATCAATGCAT+TGG | 0.507360 | 1_1:+25874916 | None:intergenic |
| TAAGTTATACCTTTAAGAAG+TGG | 0.509514 | 1_1:+25876549 | None:intergenic |
| CGGAGTCAATATTGCTGTCA+TGG | 0.510327 | 1_1:-25876363 | Msa0015780:CDS |
| GTTCTTGTCACTGGTGCCGC+AGG | 0.510375 | 1_1:-25877612 | Msa0015780:intron |
| TTCCCTGTCACCTGTGCCAA+TGG | 0.517722 | 1_1:-25874017 | Msa0015780:CDS |
| TGGCAGCAGCATGCTTCTCA+AGG | 0.517868 | 1_1:+25876255 | None:intergenic |
| TGTCTCTATATACAAGTCTC+AGG | 0.520032 | 1_1:-25876285 | Msa0015780:CDS |
| TCTTGTCCCTATGATTGCTA+GGG | 0.522049 | 1_1:-25876679 | Msa0015780:CDS |
| ATCAAGCATGTGAAGAATCA+CGG | 0.524158 | 1_1:+25876632 | None:intergenic |
| AATATTGCTGTCATGGTTGG+TGG | 0.527412 | 1_1:-25876356 | Msa0015780:CDS |
| GACTAGACTAGATCACAATA+GGG | 0.527987 | 1_1:-25874855 | Msa0015780:CDS |
| TTTCCATTCACCATTGGCAC+AGG | 0.528068 | 1_1:+25874007 | None:intergenic |
| CCTGCAGCAGAGTCATTGAA+TGG | 0.529172 | 1_1:-25876603 | Msa0015780:CDS |
| ATTCCCAAGAAAAGAAGGTA+TGG | 0.532607 | 1_1:-25876333 | Msa0015780:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.534652 | 1_1:-25874074 | Msa0015780:CDS |
| TCACCTGTGCCAATGGTGAA+TGG | 0.535072 | 1_1:-25874010 | Msa0015780:CDS |
| CGTTATCACTTAGATGCTGT+CGG | 0.537314 | 1_1:-25872922 | Msa0015780:three_prime_UTR |
| GTCAATATTGCTGTCATGGT+TGG | 0.540892 | 1_1:-25876359 | Msa0015780:CDS |
| CACCATTGGCACAGGTGACA+GGG | 0.547097 | 1_1:+25874015 | None:intergenic |
| TGGAGTTAAAATGGAGTTGG+TGG | 0.549300 | 1_1:-25876583 | Msa0015780:CDS |
| GAAAGGGATTACCTTGCAGT+TGG | 0.551890 | 1_1:+25876235 | None:intergenic |
| TTTCAATTGATGAGTTCTCA+AGG | 0.554558 | 1_1:-25873322 | Msa0015780:CDS |
| GGTGGATTCCCAAGAAAAGA+AGG | 0.558887 | 1_1:-25876338 | Msa0015780:CDS |
| TCAAGCATGTGAAGAATCAC+GGG | 0.563379 | 1_1:+25876633 | None:intergenic |
| GAATGGAGTTAAAATGGAGT+TGG | 0.576011 | 1_1:-25876586 | Msa0015780:CDS |
| TCACTCCCCTAGCAATCATA+GGG | 0.576220 | 1_1:+25876673 | None:intergenic |
| CAAGAACCCAATCGCGAATG+TGG | 0.578729 | 1_1:+25874207 | None:intergenic |
| GATGTTGTTGAGGCATGCAC+CGG | 0.579449 | 1_1:-25876383 | Msa0015780:CDS |
| TCAATGCATTGGTGTTTGCT+GGG | 0.583030 | 1_1:+25874927 | None:intergenic |
| ATTGCTAGGGGAGTGATGCT+CGG | 0.583162 | 1_1:-25876666 | Msa0015780:CDS |
| GCATGCTGCTGCCAACTGCA+AGG | 0.584268 | 1_1:-25876246 | Msa0015780:intron |
| TTAGATTCTACCAGGTATGG+TGG | 0.585031 | 1_1:-25872884 | Msa0015780:three_prime_UTR |
| TGCTACAACCGATGTTGTTG+AGG | 0.602981 | 1_1:-25876393 | Msa0015780:CDS |
| GGCAGCAGCATGCTTCTCAA+GGG | 0.606803 | 1_1:+25876256 | None:intergenic |
| AAAATAAAGCAGCCTAAGAG+AGG | 0.609879 | 1_1:+25873240 | None:intergenic |
| CAGTGACAAGAACACGAACT+GGG | 0.614915 | 1_1:+25877622 | None:intergenic |
| GCCATTTGTGATGAAATGAA+GGG | 0.618174 | 1_1:+25877651 | None:intergenic |
| CAAGAAAAGAAGGTATGGAG+AGG | 0.633211 | 1_1:-25876328 | Msa0015780:CDS |
| CTTGTCCCTATGATTGCTAG+GGG | 0.642364 | 1_1:-25876678 | Msa0015780:CDS |
| AATGAATAGATCAATCCAGA+TGG | 0.645749 | 1_1:+25874038 | None:intergenic |
| GTAAAGAATGTCATAATCTG+GGG | 0.647423 | 1_1:-25874788 | Msa0015780:CDS |
| CATGACAGCAATATTGACTC+CGG | 0.647831 | 1_1:+25876364 | None:intergenic |
| GGTGCATGCCTCAACAACAT+CGG | 0.650776 | 1_1:+25876385 | None:intergenic |
| ATACACTCCCATTGAAACGA+AGG | 0.652020 | 1_1:+25874082 | None:intergenic |
| TTGCATGATACTCAATCACA+AGG | 0.672538 | 1_1:+25873032 | None:intergenic |
| AGCACCACGTTGTTGAACAG+TGG | 0.672850 | 1_1:+25874289 | None:intergenic |
| GACAGCCGAAGAGCTGACCG+AGG | 0.681095 | 1_1:-25873285 | Msa0015780:CDS |
| ATTTCCACTGTTCAACAACG+TGG | 0.687346 | 1_1:-25874293 | Msa0015780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTTTTATTTTTT+TGG | - | chr1_1:25875572-25875591 | Msa0015780:intron | 0.0% |
| !!! | TTTTTCTATATATACAATAT+TGG | + | chr1_1:25874458-25874477 | None:intergenic | 10.0% |
| !! | AATATTGTATATATAGAAAA+AGG | - | chr1_1:25874457-25874476 | Msa0015780:intron | 10.0% |
| !! | ATATTGTATATATAGAAAAA+GGG | - | chr1_1:25874458-25874477 | Msa0015780:intron | 10.0% |
| !!! | TCAATTTTTTAAAAAAAACT+TGG | + | chr1_1:25874567-25874586 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTTAATTCCATA+TGG | - | chr1_1:25874735-25874754 | Msa0015780:intron | 10.0% |
| !!! | TTTTAAGTAAAGATTCAATT+TGG | - | chr1_1:25873342-25873361 | Msa0015780:intron | 15.0% |
| !!! | CTAATTTAATTTTGATCTAA+TGG | - | chr1_1:25873792-25873811 | Msa0015780:intron | 15.0% |
| !! | AGTTAATGAAACATTTAATA+CGG | + | chr1_1:25874053-25874072 | None:intergenic | 15.0% |
| !!! | TGATTATTGATAATGTTATA+TGG | + | chr1_1:25874712-25874731 | None:intergenic | 15.0% |
| !!! | TAATAACAGAATTTTATGTA+AGG | + | chr1_1:25874990-25875009 | None:intergenic | 15.0% |
| !! | TATATTCAATCATAGTTTAT+TGG | + | chr1_1:25875242-25875261 | None:intergenic | 15.0% |
| !! | TTCTAATGAAATTGAAATTA+TGG | - | chr1_1:25876959-25876978 | Msa0015780:intron | 15.0% |
| !! | TACAAAATTTAACTCAAATT+TGG | + | chr1_1:25877191-25877210 | None:intergenic | 15.0% |
| !!! | AATTTGAGTTAAATTTTGTA+CGG | - | chr1_1:25877191-25877210 | Msa0015780:intron | 15.0% |
| !! | AAAAACATAGATCAAAACAT+GGG | + | chr1_1:25873042-25873061 | None:intergenic | 20.0% |
| !! | AAAAAAATCATCAGAAAACA+TGG | + | chr1_1:25873093-25873112 | None:intergenic | 20.0% |
| !! | ATATAAAAAAGTGACTAATG+TGG | + | chr1_1:25873416-25873435 | None:intergenic | 20.0% |
| !!! | AGTTTGGATTTATTTTTTGT+CGG | - | chr1_1:25873508-25873527 | Msa0015780:intron | 20.0% |
| !!! | TAAATGTTTCATTAACTTGA+TGG | - | chr1_1:25874056-25874075 | Msa0015780:CDS | 20.0% |
| !!! | AAATGTAATGATGTTTTTTG+AGG | + | chr1_1:25874532-25874551 | None:intergenic | 20.0% |
| !! | GATCTTTATACAATTGAAAA+TGG | + | chr1_1:25874789-25874808 | None:intergenic | 20.0% |
| !! | AAAAAACTTAGTTGTTGTAT+CGG | - | chr1_1:25875188-25875207 | Msa0015780:intron | 20.0% |
| !! | ATCATATGGATATATGAATT+AGG | + | chr1_1:25875461-25875480 | None:intergenic | 20.0% |
| !! | ATGAATAAAATTAGACTCTT+TGG | + | chr1_1:25875505-25875524 | None:intergenic | 20.0% |
| !!! | TTTTTTGGAAAATTTACAGA+AGG | - | chr1_1:25875587-25875606 | Msa0015780:intron | 20.0% |
| !!! | TTCATTTTTAGACGTTTTAT+AGG | - | chr1_1:25875940-25875959 | Msa0015780:intron | 20.0% |
| !! | AGATCATAAATAGTTAAGAA+TGG | + | chr1_1:25876031-25876050 | None:intergenic | 20.0% |
| !! | TACAAAAACAACAGTTAAAA+AGG | - | chr1_1:25876161-25876180 | Msa0015780:intron | 20.0% |
| !!! | ATGGTTTGTAAAAACAAAAA+AGG | + | chr1_1:25876718-25876737 | None:intergenic | 20.0% |
| !! | ACTAGAAAAAGAATATAAAC+TGG | + | chr1_1:25876986-25877005 | None:intergenic | 20.0% |
| !! | CTAAATTCATAATTAACAGT+TGG | + | chr1_1:25877587-25877606 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTAGATTCTACC+AGG | - | chr1_1:25877680-25877699 | Msa0015780:five_prime_UTR | 20.0% |
| !!! | AGAAAGAAGAGTTTTTGTTT+CGG | + | chr1_1:25872874-25872893 | None:intergenic | 25.0% |
| ! | CAAAAACATAGATCAAAACA+TGG | + | chr1_1:25873043-25873062 | None:intergenic | 25.0% |
| !!! | TTAGTCACTTTTTTATATCG+AGG | - | chr1_1:25873418-25873437 | Msa0015780:intron | 25.0% |
| !!! | GTTTGGATTTATTTTTTGTC+GGG | - | chr1_1:25873509-25873528 | Msa0015780:intron | 25.0% |
| !!! | TTTGGATTTATTTTTTGTCG+GGG | - | chr1_1:25873510-25873529 | Msa0015780:intron | 25.0% |
| ! | AATTAGACGATCTAGATTAA+TGG | + | chr1_1:25873778-25873797 | None:intergenic | 25.0% |
| ! | ATAATGTTCTGTCAAATTTC+AGG | - | chr1_1:25873855-25873874 | Msa0015780:intron | 25.0% |
| ! | TAATGTTCTGTCAAATTTCA+GGG | - | chr1_1:25873856-25873875 | Msa0015780:intron | 25.0% |
| !! | TAAGTTATACCTTTAAGAAG+TGG | + | chr1_1:25874026-25874045 | None:intergenic | 25.0% |
| ! | TAATGAAACATTTAATACGG+AGG | + | chr1_1:25874050-25874069 | None:intergenic | 25.0% |
| ! | TGTGTGAAATTATTTGTTTC+AGG | - | chr1_1:25874150-25874169 | Msa0015780:intron | 25.0% |
| ! | TTTGAATGTCTACCAAAATA+TGG | + | chr1_1:25874615-25874634 | None:intergenic | 25.0% |
| ! | GGTAGATAATATATTCCATA+TGG | + | chr1_1:25874753-25874772 | None:intergenic | 25.0% |
| !! | TTTCTTGGTAATAAAACTTG+TGG | - | chr1_1:25874830-25874849 | Msa0015780:CDS | 25.0% |
| ! | GATAGAAAATGCATACAAAA+GGG | + | chr1_1:25874901-25874920 | None:intergenic | 25.0% |
| ! | AATCGATATGAACTACTAAT+TGG | + | chr1_1:25874923-25874942 | None:intergenic | 25.0% |
| !! | AATTTTATGTAAGGTCAGAT+TGG | + | chr1_1:25874981-25875000 | None:intergenic | 25.0% |
| ! | CAAAGAATAACAAATTTACC+AGG | + | chr1_1:25875068-25875087 | None:intergenic | 25.0% |
| !!! | CTGGTAAATTTGTTATTCTT+TGG | - | chr1_1:25875066-25875085 | Msa0015780:intron | 25.0% |
| !!! | TAAGTTTTTTGCGACTAAAT+GGG | + | chr1_1:25875178-25875197 | None:intergenic | 25.0% |
| ! | ATATGGATATATGAATTAGG+TGG | + | chr1_1:25875458-25875477 | None:intergenic | 25.0% |
| ! | TTATTTGAAAACAAGCAGTT+TGG | - | chr1_1:25875540-25875559 | Msa0015780:intron | 25.0% |
| ! | AAACAAGAAATGTTTCTTTC+TGG | + | chr1_1:25875697-25875716 | None:intergenic | 25.0% |
| ! | AACTTGAACATTCAATCTTT+CGG | + | chr1_1:25875758-25875777 | None:intergenic | 25.0% |
| ! | ATGTAAAGAATGTCATAATC+TGG | - | chr1_1:25875782-25875801 | Msa0015780:intron | 25.0% |
| ! | TGTAAAGAATGTCATAATCT+GGG | - | chr1_1:25875783-25875802 | Msa0015780:intron | 25.0% |
| ! | ATAATACCCTTCACTATTTA+TGG | + | chr1_1:25876075-25876094 | None:intergenic | 25.0% |
| !! | TTCTTTTCCATTGTAATGTT+AGG | - | chr1_1:25876464-25876483 | Msa0015780:intron | 25.0% |
| !! | TCTTTTCCATTGTAATGTTA+GGG | - | chr1_1:25876465-25876484 | Msa0015780:intron | 25.0% |
| ! | CTTTAGTTGAAAATGTAAAG+AGG | + | chr1_1:25876812-25876831 | None:intergenic | 25.0% |
| !! | TTGTATTCTTTTGCAATTTC+TGG | - | chr1_1:25877019-25877038 | Msa0015780:intron | 25.0% |
| ! | ATAGTTCATTTGTATCTAGA+AGG | + | chr1_1:25877396-25877415 | None:intergenic | 25.0% |
| TTTCGATCTTGATCTGTTAA+TGG | - | chr1_1:25873157-25873176 | Msa0015780:three_prime_UTR | 30.0% | |
| TTCGATCTTGATCTGTTAAT+GGG | - | chr1_1:25873158-25873177 | Msa0015780:three_prime_UTR | 30.0% | |
| CGATCTGTCATAATGAATTA+GGG | + | chr1_1:25873454-25873473 | None:intergenic | 30.0% | |
| TCGATCTGTCATAATGAATT+AGG | + | chr1_1:25873455-25873474 | None:intergenic | 30.0% | |
| GAAAGTTGCATTCTCATAAT+TGG | - | chr1_1:25873693-25873712 | Msa0015780:intron | 30.0% | |
| !! | ATTTTGATCTAATGGCATGA+AGG | - | chr1_1:25873800-25873819 | Msa0015780:intron | 30.0% |
| ! | TTTTGATCTAATGGCATGAA+GGG | - | chr1_1:25873801-25873820 | Msa0015780:intron | 30.0% |
| GTCATTGAATGGAGTTAAAA+TGG | - | chr1_1:25873980-25873999 | Msa0015780:intron | 30.0% | |
| AGTCTGAGTTTATGATGAAA+GGG | + | chr1_1:25874356-25874375 | None:intergenic | 30.0% | |
| AAGTCTGAGTTTATGATGAA+AGG | + | chr1_1:25874357-25874376 | None:intergenic | 30.0% | |
| ! | TCAAAATCCCTACCATATTT+TGG | - | chr1_1:25874600-25874619 | Msa0015780:intron | 30.0% |
| ATGTCTACCAAAATATGGTA+GGG | + | chr1_1:25874610-25874629 | None:intergenic | 30.0% | |
| AATGTCTACCAAAATATGGT+AGG | + | chr1_1:25874611-25874630 | None:intergenic | 30.0% | |
| ACGTAGAACATTTCATTTCT+TGG | - | chr1_1:25874815-25874834 | Msa0015780:CDS | 30.0% | |
| GGATAGAAAATGCATACAAA+AGG | + | chr1_1:25874902-25874921 | None:intergenic | 30.0% | |
| TTACCAGGAAGAAAAAAACA+GGG | + | chr1_1:25875053-25875072 | None:intergenic | 30.0% | |
| TTTACCAGGAAGAAAAAAAC+AGG | + | chr1_1:25875054-25875073 | None:intergenic | 30.0% | |
| TCTTCTACTATAGAACACTA+TGG | - | chr1_1:25875134-25875153 | Msa0015780:intron | 30.0% | |
| !!! | AAGTTTTTTGCGACTAAATG+GGG | + | chr1_1:25875177-25875196 | None:intergenic | 30.0% |
| !!! | CTAAGTTTTTTGCGACTAAA+TGG | + | chr1_1:25875179-25875198 | None:intergenic | 30.0% |
| ! | TTTTCGCAATGAAGACATTA+AGG | - | chr1_1:25875279-25875298 | Msa0015780:intron | 30.0% |
| TTTCGCAATGAAGACATTAA+GGG | - | chr1_1:25875280-25875299 | Msa0015780:intron | 30.0% | |
| ! | GCAAATTTTCACATGAAATC+AGG | - | chr1_1:25875418-25875437 | Msa0015780:intron | 30.0% |
| !! | CTGCTTGTTTTCAAATAACA+AGG | + | chr1_1:25875538-25875557 | None:intergenic | 30.0% |
| !! | ATGTTTCTTTCTGGAATAGA+TGG | + | chr1_1:25875688-25875707 | None:intergenic | 30.0% |
| CATTCAATCTTTCGGAAATT+TGG | + | chr1_1:25875750-25875769 | None:intergenic | 30.0% | |
| GTAAAGAATGTCATAATCTG+GGG | - | chr1_1:25875784-25875803 | Msa0015780:intron | 30.0% | |
| TATTTATGGCAGAGAGTAAT+AGG | + | chr1_1:25876061-25876080 | None:intergenic | 30.0% | |
| AACAACAGTTAAAAAGGAAC+TGG | - | chr1_1:25876167-25876186 | Msa0015780:intron | 30.0% | |
| ACAACAGTTAAAAAGGAACT+GGG | - | chr1_1:25876168-25876187 | Msa0015780:intron | 30.0% | |
| !!! | TTTTCTCTACTTAGGTTGAA+TGG | - | chr1_1:25876249-25876268 | Msa0015780:CDS | 30.0% |
| AATTAAAATGTAGCCAACCT+GGG | + | chr1_1:25876397-25876416 | None:intergenic | 30.0% | |
| AAATTAAAATGTAGCCAACC+TGG | + | chr1_1:25876398-25876417 | None:intergenic | 30.0% | |
| AATGAATAGATCAATCCAGA+TGG | + | chr1_1:25876537-25876556 | None:intergenic | 30.0% | |
| ! | AACTATTTTCCATTCACCAT+TGG | + | chr1_1:25876574-25876593 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTTTGTTGATAAC+TGG | - | chr1_1:25876653-25876672 | Msa0015780:CDS | 30.0% |
| ACCTGTATATTCACTTTACT+CGG | - | chr1_1:25876682-25876701 | Msa0015780:CDS | 30.0% | |
| TTCAACACTTATGATTGTGA+TGG | + | chr1_1:25876746-25876765 | None:intergenic | 30.0% | |
| ATAACAAAAACCGACAACTT+AGG | + | chr1_1:25876780-25876799 | None:intergenic | 30.0% | |
| !! | GTTTTATTGACAGTACAGAA+AGG | + | chr1_1:25876884-25876903 | None:intergenic | 30.0% |
| GAGGATTGTAAAATCAAGTA+TGG | + | chr1_1:25876918-25876937 | None:intergenic | 30.0% | |
| AATGAATCATGTGACTTTAG+AGG | - | chr1_1:25877126-25877145 | Msa0015780:intron | 30.0% | |
| TTTCAATTGATGAGTTCTCA+AGG | - | chr1_1:25877250-25877269 | Msa0015780:intron | 30.0% | |
| ! | ATTGCAAGTCTAACAGATTT+TGG | - | chr1_1:25877443-25877462 | Msa0015780:intron | 30.0% |
| ACAAGAATTTCGATGTTTGT+TGG | - | chr1_1:25877479-25877498 | Msa0015780:intron | 30.0% | |
| CAAGAATTTCGATGTTTGTT+GGG | - | chr1_1:25877480-25877499 | Msa0015780:intron | 30.0% | |
| ! | TTTTTAGATTCTACCAGGTA+TGG | - | chr1_1:25877685-25877704 | Msa0015780:five_prime_UTR | 30.0% |
| ! | TGCACAAGCTTATGATTTTA+GGG | - | chr1_1:25877738-25877757 | Msa0015780:five_prime_UTR | 30.0% |
| TGTTTGTGTTGTGTGATTTG+TGG | + | chr1_1:25872833-25872852 | None:intergenic | 35.0% | |
| GAAATGAAGGGAATCGAAAA+TGG | + | chr1_1:25872912-25872931 | None:intergenic | 35.0% | |
| TCCCTTCATTTCATCACAAA+TGG | - | chr1_1:25872920-25872939 | Msa0015780:three_prime_UTR | 35.0% | |
| GCCATTTGTGATGAAATGAA+GGG | + | chr1_1:25872924-25872943 | None:intergenic | 35.0% | |
| AAACAGTAGAGAAGAGATCA+TGG | + | chr1_1:25873000-25873019 | None:intergenic | 35.0% | |
| ! | TCTCTACTGTTTCTTCACTT+TGG | - | chr1_1:25873008-25873027 | Msa0015780:three_prime_UTR | 35.0% |
| CAGAAAACATGGTTAGATCA+TGG | + | chr1_1:25873082-25873101 | None:intergenic | 35.0% | |
| !! | TCTTGATCTGTTAATGGGTT+CGG | - | chr1_1:25873163-25873182 | Msa0015780:three_prime_UTR | 35.0% |
| TAATGTGGATTTATCGTGTC+GGG | + | chr1_1:25873401-25873420 | None:intergenic | 35.0% | |
| CTAATGTGGATTTATCGTGT+CGG | + | chr1_1:25873402-25873421 | None:intergenic | 35.0% | |
| TGTCCCAGGTATAAAAATGT+CGG | - | chr1_1:25873481-25873500 | Msa0015780:intron | 35.0% | |
| TAAAAATGTCGGCACTAGTT+TGG | - | chr1_1:25873492-25873511 | Msa0015780:intron | 35.0% | |
| !!! | TTTTTTGTCGGGGACTTAAT+TGG | - | chr1_1:25873520-25873539 | Msa0015780:intron | 35.0% |
| AAAATCGTGAGGGAACAAAT+TGG | - | chr1_1:25873551-25873570 | Msa0015780:intron | 35.0% | |
| AAATCGTGAGGGAACAAATT+GGG | - | chr1_1:25873552-25873571 | Msa0015780:intron | 35.0% | |
| TGTCCAAATTTCATGTGTAG+TGG | - | chr1_1:25873633-25873652 | Msa0015780:intron | 35.0% | |
| GTCCAAATTTCATGTGTAGT+GGG | - | chr1_1:25873634-25873653 | Msa0015780:intron | 35.0% | |
| AACCCACTACACATGAAATT+TGG | + | chr1_1:25873639-25873658 | None:intergenic | 35.0% | |
| AGACGATCTAGATTAATGGT+CGG | + | chr1_1:25873774-25873793 | None:intergenic | 35.0% | |
| TGTCAAATTTCAGGGCAAAT+TGG | - | chr1_1:25873864-25873883 | Msa0015780:intron | 35.0% | |
| ATCAAGCATGTGAAGAATCA+CGG | + | chr1_1:25873943-25873962 | None:intergenic | 35.0% | |
| GAATGGAGTTAAAATGGAGT+TGG | - | chr1_1:25873986-25874005 | Msa0015780:intron | 35.0% | |
| ATTCCCAAGAAAAGAAGGTA+TGG | - | chr1_1:25874239-25874258 | Msa0015780:CDS | 35.0% | |
| ! | TCTCCATACCTTCTTTTCTT+GGG | + | chr1_1:25874245-25874264 | None:intergenic | 35.0% |
| TGTCTCTATATACAAGTCTC+AGG | - | chr1_1:25874287-25874306 | Msa0015780:CDS | 35.0% | |
| CTTTGTATCCAATGTTGCAA+TGG | - | chr1_1:25874383-25874402 | Msa0015780:intron | 35.0% | |
| ! | AATGGACTTTGTCATGTCAT+CGG | - | chr1_1:25874401-25874420 | Msa0015780:intron | 35.0% |
| TATATAGAAAAAGGGAAGCC+CGG | - | chr1_1:25874466-25874485 | Msa0015780:intron | 35.0% | |
| GAAAATGGAGTGACGTATAT+AGG | + | chr1_1:25874774-25874793 | None:intergenic | 35.0% | |
| TTCACATGAAATCAGGTGTA+TGG | - | chr1_1:25875425-25875444 | Msa0015780:intron | 35.0% | |
| TCACATGAAATCAGGTGTAT+GGG | - | chr1_1:25875426-25875445 | Msa0015780:intron | 35.0% | |
| ATCACATGGACTTCATCATA+TGG | + | chr1_1:25875475-25875494 | None:intergenic | 35.0% | |
| !! | AAGGCTTTGAAATATCTTGC+AGG | - | chr1_1:25875606-25875625 | Msa0015780:intron | 35.0% |
| TTGAAATATCTTGCAGGTTC+TGG | - | chr1_1:25875612-25875631 | Msa0015780:intron | 35.0% | |
| TTCCTTCAAGATCAATGCAT+TGG | + | chr1_1:25875659-25875678 | None:intergenic | 35.0% | |
| TGACTAGACTAGATCACAAT+AGG | - | chr1_1:25875716-25875735 | Msa0015780:intron | 35.0% | |
| GACTAGACTAGATCACAATA+GGG | - | chr1_1:25875717-25875736 | Msa0015780:intron | 35.0% | |
| TCTCTGCCATAAATAGTGAA+GGG | - | chr1_1:25876066-25876085 | Msa0015780:intron | 35.0% | |
| CAACAGTTAAAAAGGAACTG+GGG | - | chr1_1:25876169-25876188 | Msa0015780:intron | 35.0% | |
| AACAGTTAAAAAGGAACTGG+GGG | - | chr1_1:25876170-25876189 | Msa0015780:intron | 35.0% | |
| ! | GTTCCAACTTTTCTCTACTT+AGG | - | chr1_1:25876241-25876260 | Msa0015780:intron | 35.0% |
| CAACCTAAGTAGAGAAAAGT+TGG | + | chr1_1:25876247-25876266 | None:intergenic | 35.0% | |
| ATTAAAATGTAGCCAACCTG+GGG | + | chr1_1:25876396-25876415 | None:intergenic | 35.0% | |
| TTCTGTATTTGCTTCCAGAT+CGG | - | chr1_1:25876435-25876454 | Msa0015780:intron | 35.0% | |
| GAAAAGAAAATAAGCCGATC+TGG | + | chr1_1:25876452-25876471 | None:intergenic | 35.0% | |
| ! | AAGGTACCCTAACATTACAA+TGG | + | chr1_1:25876474-25876493 | None:intergenic | 35.0% |
| GGTGAATGGAAAATAGTTCA+AGG | - | chr1_1:25876576-25876595 | Msa0015780:CDS | 35.0% | |
| ! | AAATGTTTCCCCTCAGTTTT+TGG | - | chr1_1:25876636-25876655 | Msa0015780:CDS | 35.0% |
| AACAAACACCAAAAACTGAG+GGG | + | chr1_1:25876647-25876666 | None:intergenic | 35.0% | |
| CAACAAACACCAAAAACTGA+GGG | + | chr1_1:25876648-25876667 | None:intergenic | 35.0% | |
| TCAACAAACACCAAAAACTG+AGG | + | chr1_1:25876649-25876668 | None:intergenic | 35.0% | |
| ACCGAGTAAAGTGAATATAC+AGG | + | chr1_1:25876686-25876705 | None:intergenic | 35.0% | |
| !! | TATGATTGTGATGGATGGTA+TGG | + | chr1_1:25876737-25876756 | None:intergenic | 35.0% |
| ! | ACACTTATGATTGTGATGGA+TGG | + | chr1_1:25876742-25876761 | None:intergenic | 35.0% |
| TTTACAATCCTCATACTCCT+TGG | - | chr1_1:25876926-25876945 | Msa0015780:intron | 35.0% | |
| !!! | TCTTCACCTTTTTTATCCAC+AGG | - | chr1_1:25877225-25877244 | Msa0015780:intron | 35.0% |
| GAAAGTCCTGTGGATAAAAA+AGG | + | chr1_1:25877234-25877253 | None:intergenic | 35.0% | |
| AAAATAAAGCAGCCTAAGAG+AGG | + | chr1_1:25877335-25877354 | None:intergenic | 35.0% | |
| TTGCATGATACTCAATCACA+AGG | + | chr1_1:25877543-25877562 | None:intergenic | 35.0% | |
| GTGATTGAGTATCATGCAAT+TGG | - | chr1_1:25877544-25877563 | Msa0015780:intron | 35.0% | |
| ! | GTGCACAAGCTTATGATTTT+AGG | - | chr1_1:25877737-25877756 | Msa0015780:five_prime_UTR | 35.0% |
| ! | GCACAAGCTTATGATTTTAG+GGG | - | chr1_1:25877739-25877758 | Msa0015780:five_prime_UTR | 35.0% |
| GGCCATTTGTGATGAAATGA+AGG | + | chr1_1:25872925-25872944 | None:intergenic | 40.0% | |
| ! | GAAGAGATCATGGTGATGAA+AGG | + | chr1_1:25872990-25873009 | None:intergenic | 40.0% |
| TATCGTGTCGGGGAATAAAT+TGG | + | chr1_1:25873390-25873409 | None:intergenic | 40.0% | |
| AATGTGGATTTATCGTGTCG+GGG | + | chr1_1:25873400-25873419 | None:intergenic | 40.0% | |
| !! | GTGCCGACATTTTTATACCT+GGG | + | chr1_1:25873487-25873506 | None:intergenic | 40.0% |
| !!! | AGTGCCGACATTTTTATACC+TGG | + | chr1_1:25873488-25873507 | None:intergenic | 40.0% |
| CATTGTGCGAAATTGTGATG+TGG | - | chr1_1:25873661-25873680 | Msa0015780:intron | 40.0% | |
| ATTGGAAATGTAGCGACTAC+TGG | - | chr1_1:25873711-25873730 | Msa0015780:intron | 40.0% | |
| CGACTACTGGATTTAATCTG+CGG | - | chr1_1:25873724-25873743 | Msa0015780:intron | 40.0% | |
| TCTTGTCCCTATGATTGCTA+GGG | - | chr1_1:25873893-25873912 | Msa0015780:intron | 40.0% | |
| TCAAGCATGTGAAGAATCAC+GGG | + | chr1_1:25873942-25873961 | None:intergenic | 40.0% | |
| TGGAGTTAAAATGGAGTTGG+TGG | - | chr1_1:25873989-25874008 | Msa0015780:intron | 40.0% | |
| GCTGCATTTCCACTTCTTAA+AGG | - | chr1_1:25874014-25874033 | Msa0015780:CDS | 40.0% | |
| !! | CATGACAGCAATATTGACTC+CGG | + | chr1_1:25874211-25874230 | None:intergenic | 40.0% |
| GTCAATATTGCTGTCATGGT+TGG | - | chr1_1:25874213-25874232 | Msa0015780:CDS | 40.0% | |
| AATATTGCTGTCATGGTTGG+TGG | - | chr1_1:25874216-25874235 | Msa0015780:CDS | 40.0% | |
| ! | CTCTCCATACCTTCTTTTCT+TGG | + | chr1_1:25874246-25874265 | None:intergenic | 40.0% |
| ! | CAAGAAAAGAAGGTATGGAG+AGG | - | chr1_1:25874244-25874263 | Msa0015780:CDS | 40.0% |
| ! | AAAAGAAGGTATGGAGAGGA+AGG | - | chr1_1:25874248-25874267 | Msa0015780:CDS | 40.0% |
| GACAAAGTCCATTGCAACAT+TGG | + | chr1_1:25874394-25874413 | None:intergenic | 40.0% | |
| ATGGACTTTGTCATGTCATC+GGG | - | chr1_1:25874402-25874421 | Msa0015780:intron | 40.0% | |
| ATTAAAACTCCCGCATATGC+AGG | - | chr1_1:25874492-25874511 | Msa0015780:intron | 40.0% | |
| TTAAAACTCCCGCATATGCA+GGG | - | chr1_1:25874493-25874512 | Msa0015780:intron | 40.0% | |
| AAAACTTGTGGTTGAACCAG+CGG | - | chr1_1:25874842-25874861 | Msa0015780:CDS | 40.0% | |
| AACCAGCGGTACTACTTAAT+TGG | - | chr1_1:25874856-25874875 | Msa0015780:CDS | 40.0% | |
| TTATGTAAGGTCAGATTGGC+TGG | + | chr1_1:25874977-25874996 | None:intergenic | 40.0% | |
| !!! | CTTCCCTGTTTTTTTCTTCC+TGG | - | chr1_1:25875047-25875066 | Msa0015780:intron | 40.0% |
| ! | GAAGACATTAAGGGTGTGTT+TGG | - | chr1_1:25875289-25875308 | Msa0015780:intron | 40.0% |
| ! | TTAAGGGTGTGTTTGGATGA+AGG | - | chr1_1:25875296-25875315 | Msa0015780:intron | 40.0% |
| ! | TAAGGGTGTGTTTGGATGAA+GGG | - | chr1_1:25875297-25875316 | Msa0015780:intron | 40.0% |
| TGTGTTTGGATGAAGGGTTT+AGG | - | chr1_1:25875303-25875322 | Msa0015780:intron | 40.0% | |
| TTTGGATGAAGGGTTTAGGA+AGG | - | chr1_1:25875307-25875326 | Msa0015780:intron | 40.0% | |
| TTGGATGAAGGGTTTAGGAA+GGG | - | chr1_1:25875308-25875327 | Msa0015780:intron | 40.0% | |
| TCTTTGGCGATGAAATCACA+TGG | + | chr1_1:25875489-25875508 | None:intergenic | 40.0% | |
| ! | TCAATGCATTGGTGTTTGCT+GGG | + | chr1_1:25875648-25875667 | None:intergenic | 40.0% |
| ! | ATCAATGCATTGGTGTTTGC+TGG | + | chr1_1:25875649-25875668 | None:intergenic | 40.0% |
| ! | CACCAATGCATTGATCTTGA+AGG | - | chr1_1:25875654-25875673 | Msa0015780:intron | 40.0% |
| ACTAGATCACAATAGGGCTT+TGG | - | chr1_1:25875723-25875742 | Msa0015780:intron | 40.0% | |
| CTAGATCACAATAGGGCTTT+GGG | - | chr1_1:25875724-25875743 | Msa0015780:intron | 40.0% | |
| ATGGTTGACATCAGGATACT+GGG | + | chr1_1:25875824-25875843 | None:intergenic | 40.0% | |
| TGTGATATACCATGCATCGT+CGG | + | chr1_1:25875896-25875915 | None:intergenic | 40.0% | |
| CTCTCTGCCATAAATAGTGA+AGG | - | chr1_1:25876065-25876084 | Msa0015780:intron | 40.0% | |
| ATTTCCACTGTTCAACAACG+TGG | - | chr1_1:25876279-25876298 | Msa0015780:CDS | 40.0% | |
| !! | ACGTGGTGCTGCAATTATTA+AGG | - | chr1_1:25876296-25876315 | Msa0015780:CDS | 40.0% |
| ! | TTAGGGTACCTTCGTTTCAA+TGG | - | chr1_1:25876482-25876501 | Msa0015780:intron | 40.0% |
| ! | TAGGGTACCTTCGTTTCAAT+GGG | - | chr1_1:25876483-25876502 | Msa0015780:intron | 40.0% |
| ATACACTCCCATTGAAACGA+AGG | + | chr1_1:25876493-25876512 | None:intergenic | 40.0% | |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr1_1:25876498-25876517 | Msa0015780:intron | 40.0% |
| CAATCCAGATGGTACATTGT+AGG | + | chr1_1:25876526-25876545 | None:intergenic | 40.0% | |
| !! | AACCCTCGTGCTTAATTTGT+CGG | - | chr1_1:25876839-25876858 | Msa0015780:intron | 40.0% |
| !! | ATTAGAAAAGCACTCCACCA+AGG | + | chr1_1:25876946-25876965 | None:intergenic | 40.0% |
| CTCATCAATTGAAAGTCCTG+TGG | + | chr1_1:25877244-25877263 | None:intergenic | 40.0% | |
| TGAGTTCTCAAGGAAGAAGT+TGG | - | chr1_1:25877260-25877279 | Msa0015780:intron | 40.0% | |
| ! | GTGAGCCAAATTCTTTTCCT+CGG | + | chr1_1:25877307-25877326 | None:intergenic | 40.0% |
| AACTATGAGTGTCTCGTCTT+TGG | - | chr1_1:25877410-25877429 | Msa0015780:intron | 40.0% | |
| !! | CTAACAGATTTTGGTCACAG+TGG | - | chr1_1:25877452-25877471 | Msa0015780:intron | 40.0% |
| CGTTATCACTTAGATGCTGT+CGG | - | chr1_1:25877650-25877669 | Msa0015780:exon | 40.0% | |
| TTAGATTCTACCAGGTATGG+TGG | - | chr1_1:25877688-25877707 | Msa0015780:five_prime_UTR | 40.0% | |
| !! | GAGATTTTAACCACCATACC+TGG | + | chr1_1:25877701-25877720 | None:intergenic | 40.0% |
| AAGAACACGAACTGGGTCTT+TGG | + | chr1_1:25872946-25872965 | None:intergenic | 45.0% | |
| CAGTGACAAGAACACGAACT+GGG | + | chr1_1:25872953-25872972 | None:intergenic | 45.0% | |
| ! | CAGATCGACTTATTTGTCCC+AGG | - | chr1_1:25873467-25873486 | Msa0015780:intron | 45.0% |
| ! | TTCCCTCACGATTTTCTCTC+GGG | + | chr1_1:25873546-25873565 | None:intergenic | 45.0% |
| ! | GTTCCCTCACGATTTTCTCT+CGG | + | chr1_1:25873547-25873566 | None:intergenic | 45.0% |
| CTAATGGCATGAAGGGAATC+TGG | - | chr1_1:25873808-25873827 | Msa0015780:intron | 45.0% | |
| CTCTTGTCCCTATGATTGCT+AGG | - | chr1_1:25873892-25873911 | Msa0015780:intron | 45.0% | |
| CTTGTCCCTATGATTGCTAG+GGG | - | chr1_1:25873894-25873913 | Msa0015780:intron | 45.0% | |
| TCACTCCCCTAGCAATCATA+GGG | + | chr1_1:25873902-25873921 | None:intergenic | 45.0% | |
| ATCACTCCCCTAGCAATCAT+AGG | + | chr1_1:25873903-25873922 | None:intergenic | 45.0% | |
| !! | TGAAGAATCACGGGTTGATC+AGG | + | chr1_1:25873933-25873952 | None:intergenic | 45.0% |
| ! | CTTGTACGTGTGATCGACTT+AGG | - | chr1_1:25874119-25874138 | Msa0015780:intron | 45.0% |
| TGCTACAACCGATGTTGTTG+AGG | - | chr1_1:25874179-25874198 | Msa0015780:intron | 45.0% | |
| CGGAGTCAATATTGCTGTCA+TGG | - | chr1_1:25874209-25874228 | Msa0015780:CDS | 45.0% | |
| ! | GGTGGATTCCCAAGAAAAGA+AGG | - | chr1_1:25874234-25874253 | Msa0015780:CDS | 45.0% |
| GAAAGGGATTACCTTGCAGT+TGG | + | chr1_1:25874340-25874359 | None:intergenic | 45.0% | |
| TTGTCATGTCATCGGGTCAA+TGG | - | chr1_1:25874409-25874428 | Msa0015780:intron | 45.0% | |
| !! | ATGCGGGAGTTTTAATGCAC+CGG | + | chr1_1:25874488-25874507 | None:intergenic | 45.0% |
| GACCAATTAAGTAGTACCGC+TGG | + | chr1_1:25874861-25874880 | None:intergenic | 45.0% | |
| ! | GTCAGATTGGCTGGTTCAAT+TGG | + | chr1_1:25874968-25874987 | None:intergenic | 45.0% |
| ACTAAATGGGGTCAGCAACA+TGG | + | chr1_1:25875165-25875184 | None:intergenic | 45.0% | |
| ATGAAGGGTTTAGGAAGGGA+GGG | - | chr1_1:25875312-25875331 | Msa0015780:intron | 45.0% | |
| CATGGTTGACATCAGGATAC+TGG | + | chr1_1:25875825-25875844 | None:intergenic | 45.0% | |
| ACAGTTGCATGGTTGACATC+AGG | + | chr1_1:25875832-25875851 | None:intergenic | 45.0% | |
| ! | CATCGTCGGAAACAAGTTGA+CGG | + | chr1_1:25875882-25875901 | None:intergenic | 45.0% |
| ! | AACTTGTTTCCGACGATGCA+TGG | - | chr1_1:25875884-25875903 | Msa0015780:intron | 45.0% |
| TTGTGACCACATTCGCGATT+GGG | - | chr1_1:25876359-25876378 | Msa0015780:CDS | 45.0% | |
| GGTTCCTACAATGTACCATC+TGG | - | chr1_1:25876519-25876538 | Msa0015780:intron | 45.0% | |
| TTTCCATTCACCATTGGCAC+AGG | + | chr1_1:25876568-25876587 | None:intergenic | 45.0% | |
| AACCGACAACTTAGGCATGA+GGG | + | chr1_1:25876772-25876791 | None:intergenic | 45.0% | |
| AAACCGACAACTTAGGCATG+AGG | + | chr1_1:25876773-25876792 | None:intergenic | 45.0% | |
| CACCGACAAATTAAGCACGA+GGG | + | chr1_1:25876844-25876863 | None:intergenic | 45.0% | |
| ACACCGACAAATTAAGCACG+AGG | + | chr1_1:25876845-25876864 | None:intergenic | 45.0% | |
| ACAATCCTCATACTCCTTGG+TGG | - | chr1_1:25876929-25876948 | Msa0015780:intron | 45.0% | |
| GCTGACCGAGGAAAAGAATT+TGG | - | chr1_1:25877299-25877318 | Msa0015780:intron | 45.0% | |
| !!! | ATTTTTTTGATTTTAAATAA+TGG | - | chr1_1:25873105-25873124 | Msa0015780:three_prime_UTR | 5.0% |
| !!! | TTTTTTTGATTTTAAATAAT+GGG | - | chr1_1:25873106-25873125 | Msa0015780:three_prime_UTR | 5.0% |
| TGTTTCGGAGAGAGTGAGTG+AGG | + | chr1_1:25872859-25872878 | None:intergenic | 50.0% | |
| CCAGTGACAAGAACACGAAC+TGG | + | chr1_1:25872954-25872973 | None:intergenic | 50.0% | |
| CCAGTTCGTGTTCTTGTCAC+TGG | - | chr1_1:25872951-25872970 | Msa0015780:three_prime_UTR | 50.0% | |
| !! | GGTGATGAAAGGAGTACCTG+CGG | + | chr1_1:25872979-25872998 | None:intergenic | 50.0% |
| GGCATGAAGGGAATCTGGTT+CGG | - | chr1_1:25873813-25873832 | Msa0015780:intron | 50.0% | |
| ATTGCTAGGGGAGTGATGCT+CGG | - | chr1_1:25873906-25873925 | Msa0015780:intron | 50.0% | |
| CCATTCAATGACTCTGCTGC+AGG | + | chr1_1:25873972-25873991 | None:intergenic | 50.0% | |
| CCTGCAGCAGAGTCATTGAA+TGG | - | chr1_1:25873969-25873988 | Msa0015780:intron | 50.0% | |
| GGTGCATGCCTCAACAACAT+CGG | + | chr1_1:25874190-25874209 | None:intergenic | 50.0% | |
| GATGTTGTTGAGGCATGCAC+CGG | - | chr1_1:25874189-25874208 | Msa0015780:intron | 50.0% | |
| !! | TGCGGGAGTTTTAATGCACC+GGG | + | chr1_1:25874487-25874506 | None:intergenic | 50.0% |
| !!! | GTTTTTTGAGGACCCCTTCC+CGG | + | chr1_1:25874520-25874539 | None:intergenic | 50.0% |
| ! | CGGTTTGTTTGCGACTATGC+TGG | - | chr1_1:25875208-25875227 | Msa0015780:intron | 50.0% |
| GATGAAGGGTTTAGGAAGGG+AGG | - | chr1_1:25875311-25875330 | Msa0015780:intron | 50.0% | |
| TGAAGGGTTTAGGAAGGGAG+GGG | - | chr1_1:25875313-25875332 | Msa0015780:intron | 50.0% | |
| ! | CTGGGGTGTTAACAGTTGCA+TGG | + | chr1_1:25875843-25875862 | None:intergenic | 50.0% |
| CAACTGTTAACACCCCAGCT+GGG | - | chr1_1:25875845-25875864 | Msa0015780:intron | 50.0% | |
| AACTGTTAACACCCCAGCTG+GGG | - | chr1_1:25875846-25875865 | Msa0015780:intron | 50.0% | |
| ! | TCGGAAACAAGTTGACGGAC+GGG | + | chr1_1:25875877-25875896 | None:intergenic | 50.0% |
| ! | GTCGGAAACAAGTTGACGGA+CGG | + | chr1_1:25875878-25875897 | None:intergenic | 50.0% |
| AGCACCACGTTGTTGAACAG+TGG | + | chr1_1:25876286-25876305 | None:intergenic | 50.0% | |
| CTTGTGACCACATTCGCGAT+TGG | - | chr1_1:25876358-25876377 | Msa0015780:CDS | 50.0% | |
| CAAGAACCCAATCGCGAATG+TGG | + | chr1_1:25876368-25876387 | None:intergenic | 50.0% | |
| CACATTCGCGATTGGGTTCT+TGG | - | chr1_1:25876366-25876385 | Msa0015780:CDS | 50.0% | |
| TCACCTGTGCCAATGGTGAA+TGG | - | chr1_1:25876562-25876581 | Msa0015780:CDS | 50.0% | |
| CACCCTCATGCCTAAGTTGT+CGG | - | chr1_1:25876767-25876786 | Msa0015780:intron | 50.0% | |
| ! | CTTTTCCTCGGTCAGCTCTT+CGG | + | chr1_1:25877295-25877314 | None:intergenic | 50.0% |
| TGGCCCGAGAGAAAATCGTG+AGG | - | chr1_1:25873540-25873559 | Msa0015780:intron | 55.0% | |
| GGCCCGAGAGAAAATCGTGA+GGG | - | chr1_1:25873541-25873560 | Msa0015780:intron | 55.0% | |
| GGCAGCAGCATGCTTCTCAA+GGG | + | chr1_1:25874319-25874338 | None:intergenic | 55.0% | |
| TGGCAGCAGCATGCTTCTCA+AGG | + | chr1_1:25874320-25874339 | None:intergenic | 55.0% | |
| GCAACTGTTAACACCCCAGC+TGG | - | chr1_1:25875844-25875863 | Msa0015780:intron | 55.0% | |
| TTGGGTTCTTGGAACTCCCC+AGG | - | chr1_1:25876377-25876396 | Msa0015780:CDS | 55.0% | |
| GTTCTTGGAACTCCCCAGGT+TGG | - | chr1_1:25876381-25876400 | Msa0015780:CDS | 55.0% | |
| TTCCCTGTCACCTGTGCCAA+TGG | - | chr1_1:25876555-25876574 | Msa0015780:intron | 55.0% | |
| CACCATTGGCACAGGTGACA+GGG | + | chr1_1:25876560-25876579 | None:intergenic | 55.0% | |
| TCACCATTGGCACAGGTGAC+AGG | + | chr1_1:25876561-25876580 | None:intergenic | 55.0% | |
| ! | GCACTCCACCAAGGAGTATG+AGG | + | chr1_1:25876937-25876956 | None:intergenic | 55.0% |
| GGCTCACTCTTGCCTCTCTT+AGG | - | chr1_1:25877320-25877339 | Msa0015780:intron | 55.0% | |
| !! | GTTCTTGTCACTGGTGCCGC+AGG | - | chr1_1:25872960-25872979 | Msa0015780:three_prime_UTR | 60.0% |
| GCATGCTGCTGCCAACTGCA+AGG | - | chr1_1:25874326-25874345 | Msa0015780:intron | 60.0% | |
| ACTCCCGCATATGCAGGGTC+CGG | - | chr1_1:25874498-25874517 | Msa0015780:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr1_1:25874504-25874523 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr1_1:25874505-25874524 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr1_1:25874504-25874523 | Msa0015780:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr1_1:25874505-25874524 | Msa0015780:intron | 60.0% | |
| AGGGTTTAGGAAGGGAGGGG+AGG | - | chr1_1:25875316-25875335 | Msa0015780:intron | 60.0% | |
| GGGTTTAGGAAGGGAGGGGA+GGG | - | chr1_1:25875317-25875336 | Msa0015780:intron | 60.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr1_1:25874499-25874518 | Msa0015780:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr1_1:25874503-25874522 | Msa0015780:intron | 65.0% | |
| GACAGCCGAAGAGCTGACCG+AGG | - | chr1_1:25877287-25877306 | Msa0015780:intron | 65.0% | |
| ! | GACGGGCTTCTCCCCAGCTG+GGG | + | chr1_1:25875860-25875879 | None:intergenic | 70.0% |
| ! | GGACGGGCTTCTCCCCAGCT+GGG | + | chr1_1:25875861-25875880 | None:intergenic | 70.0% |
| ! | CGGACGGGCTTCTCCCCAGC+TGG | + | chr1_1:25875862-25875881 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 25872819 | 25877775 | 25872819 | ID=Msa0015780;Name=Msa0015780 |
| chr1_1 | mRNA | 25872819 | 25877775 | 25872819 | ID=Msa0015780-mRNA-1;Parent=Msa0015780;Name=Msa0015780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=120|0.83|0.85|1|1|1|7|434|305 |
| chr1_1 | exon | 25872819 | 25873347 | 25872819 | ID=Msa0015780-mRNA-1:exon:8827;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25873997 | 25874108 | 25873997 | ID=Msa0015780-mRNA-1:exon:8826;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25874196 | 25874331 | 25874196 | ID=Msa0015780-mRNA-1:exon:8825;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25874770 | 25874966 | 25874770 | ID=Msa0015780-mRNA-1:exon:8824;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25876247 | 25876422 | 25876247 | ID=Msa0015780-mRNA-1:exon:8823;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25876559 | 25876717 | 25876559 | ID=Msa0015780-mRNA-1:exon:8822;Parent=Msa0015780-mRNA-1 |
| chr1_1 | exon | 25877613 | 25877775 | 25877613 | ID=Msa0015780-mRNA-1:exon:8821;Parent=Msa0015780-mRNA-1 |
| chr1_1 | five_prime_UTR | 25877656 | 25877775 | 25877656 | ID=Msa0015780-mRNA-1:five_prime_utr;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25877613 | 25877655 | 25877613 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25876559 | 25876717 | 25876559 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25876247 | 25876422 | 25876247 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25874770 | 25874966 | 25874770 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25874196 | 25874331 | 25874196 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25873997 | 25874108 | 25873997 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | CDS | 25873253 | 25873347 | 25873253 | ID=Msa0015780-mRNA-1:cds;Parent=Msa0015780-mRNA-1 |
| chr1_1 | three_prime_UTR | 25872819 | 25873252 | 25872819 | ID=Msa0015780-mRNA-1:three_prime_utr;Parent=Msa0015780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
