Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156310 | O48905.1 | 100.000 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156310 | sp|O48905|MDHC_MEDSA | 100.000 | 332 | 0 | 0 | 1 | 332 | 1 | 332 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156310 | B7FJQ4 | 99.096 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015780 | Msa0156310 | 0.941953 | 1.690639e-101 | -8.615850e-47 |
| Msa0156310 | Msa0881210 | 0.845330 | 4.344313e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156310 | MtrunA17_Chr1g0167651 | 99.096 | 332 | 3 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
| Msa0156310 | MtrunA17_Chr1g0187751 | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| Msa0156310 | MtrunA17_Chr8g0334691 | 84.740 | 308 | 47 | 0 | 24 | 331 | 1 | 308 | 0.0 | 527 |
| Msa0156310 | MtrunA17_Chr1g0197371 | 39.210 | 329 | 193 | 4 | 3 | 328 | 92 | 416 | 7.24e-73 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156310 | AT1G04410.1 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 604 |
| Msa0156310 | AT5G43330.1 | 89.759 | 332 | 34 | 0 | 1 | 332 | 1 | 332 | 0.0 | 602 |
| Msa0156310 | AT5G56720.1 | 73.795 | 332 | 87 | 0 | 1 | 332 | 40 | 371 | 0.0 | 517 |
| Msa0156310 | AT5G58330.1 | 41.337 | 329 | 186 | 4 | 3 | 328 | 97 | 421 | 1.57e-78 | 247 |
| Msa0156310 | AT5G58330.2 | 41.337 | 329 | 186 | 4 | 3 | 328 | 96 | 420 | 1.63e-78 | 247 |
| Msa0156310 | AT5G58330.3 | 41.270 | 315 | 178 | 4 | 17 | 328 | 2 | 312 | 1.24e-75 | 236 |
Find 111 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAATCTTTCGGAAATT+TGG | 0.094023 | 1_4:+22290220 | None:intergenic |
| CACATTCGCGATTGGGTTCT+TGG | 0.190578 | 1_4:-22289627 | Msa0156310:CDS |
| GCTGCATTTCCACTTCTTAA+AGG | 0.217111 | 1_4:-22291938 | Msa0156310:intron |
| AAACAAGAAATGTTTCTTTC+TGG | 0.220813 | 1_4:+22290273 | None:intergenic |
| ATTGCAAGTCTAACAGATTT+TGG | 0.240561 | 1_4:-22288547 | Msa0156310:three_prime_UTR |
| GTCATTGAATGGAGTTAAAA+TGG | 0.260659 | 1_4:-22291972 | Msa0156310:CDS |
| GCTGACTGAGGAAAAGAATT+TGG | 0.291306 | 1_4:-22288691 | Msa0156310:CDS |
| TGTCAAATTTCAGGGCAAAT+TGG | 0.298686 | 1_4:-22292088 | Msa0156310:intron |
| AACTATGAGTGTCTCGTCTT+TGG | 0.302447 | 1_4:-22288580 | Msa0156310:three_prime_UTR |
| GAAATGAAGGGAATCGAAAA+TGG | 0.319443 | 1_4:+22293043 | None:intergenic |
| ATGTAAAGAATGTCATAATC+TGG | 0.320654 | 1_4:-22290185 | Msa0156310:CDS |
| CATGGTTGACATCAGGATAC+TGG | 0.330089 | 1_4:+22290145 | None:intergenic |
| ATGTTTCTTTCTGGAATAGA+TGG | 0.330607 | 1_4:+22290282 | None:intergenic |
| AACTTGAACATTCAATCTTT+CGG | 0.331338 | 1_4:+22290212 | None:intergenic |
| CGGACGGGCTTCTCCCCAGC+TGG | 0.336380 | 1_4:+22290108 | None:intergenic |
| AAGAACACGAACTGGGTCTT+TGG | 0.339916 | 1_4:+22293009 | None:intergenic |
| ACGTGGTGCTGCAATTATTA+AGG | 0.343639 | 1_4:-22289697 | Msa0156310:CDS |
| GGCTCACTCTTGCCTCTCTT+AGG | 0.351901 | 1_4:-22288670 | Msa0156310:exon |
| ATCAATGCATTGGTGTTTGC+TGG | 0.355483 | 1_4:+22290321 | None:intergenic |
| TGACTAGACTAGATCACAAT+AGG | 0.357382 | 1_4:-22290251 | Msa0156310:CDS |
| ACTAGATCACAATAGGGCTT+TGG | 0.385573 | 1_4:-22290244 | Msa0156310:CDS |
| CAAGAATTTCGATGTTTGTT+GGG | 0.389434 | 1_4:-22288510 | Msa0156310:three_prime_UTR |
| CTAGATCACAATAGGGCTTT+GGG | 0.392356 | 1_4:-22290243 | Msa0156310:CDS |
| CTTGTGACCACATTCGCGAT+TGG | 0.397092 | 1_4:-22289635 | Msa0156310:CDS |
| TGTTTGTGTTGTGTGATTTG+TGG | 0.402765 | 1_4:+22293122 | None:intergenic |
| ATAGTTCATTTGTATCTAGA+AGG | 0.405518 | 1_4:+22288597 | None:intergenic |
| TCCCTTCATTTCATCACAAA+TGG | 0.412693 | 1_4:-22293032 | Msa0156310:exon |
| TGAAGAATCACGGGTTGATC+AGG | 0.412959 | 1_4:+22292022 | None:intergenic |
| TTGTGACCACATTCGCGATT+GGG | 0.424378 | 1_4:-22289634 | Msa0156310:CDS |
| ATCACTCCCCTAGCAATCAT+AGG | 0.425010 | 1_4:+22292052 | None:intergenic |
| TTAGGGTACCTTCGTTTCAA+TGG | 0.430895 | 1_4:-22289511 | Msa0156310:intron |
| CACCAATGCATTGATCTTGA+AGG | 0.441335 | 1_4:-22290313 | Msa0156310:CDS |
| GGACGGGCTTCTCCCCAGCT+GGG | 0.441906 | 1_4:+22290109 | None:intergenic |
| AAAAGAAGGTATGGAGAGGA+AGG | 0.445651 | 1_4:-22291704 | Msa0156310:CDS |
| ACAAGAATTTCGATGTTTGT+TGG | 0.449090 | 1_4:-22288511 | Msa0156310:three_prime_UTR |
| CCAGTTCGTGTTCTTGTCAC+TGG | 0.450164 | 1_4:-22293001 | Msa0156310:CDS |
| CTCTTGTCCCTATGATTGCT+AGG | 0.451223 | 1_4:-22292060 | Msa0156310:CDS |
| CCAGTGACAAGAACACGAAC+TGG | 0.452334 | 1_4:+22293001 | None:intergenic |
| TAGGGTACCTTCGTTTCAAT+GGG | 0.465774 | 1_4:-22289510 | Msa0156310:CDS |
| ACAGTTGCATGGTTGACATC+AGG | 0.470853 | 1_4:+22290138 | None:intergenic |
| TGTTTCGGAGAGAGTGAGTG+AGG | 0.473470 | 1_4:+22293096 | None:intergenic |
| AACTTGTTTCCGACGATGCA+TGG | 0.473611 | 1_4:-22290083 | Msa0156310:intron |
| CAATCCAGATGGTACATTGT+AGG | 0.475070 | 1_4:+22289470 | None:intergenic |
| GCAACTGTTAACACCCCAGC+TGG | 0.476508 | 1_4:-22290123 | Msa0156310:CDS |
| TCACCATTGGCACAGGTGAC+AGG | 0.479094 | 1_4:+22289435 | None:intergenic |
| GGTTCCTACAATGTACCATC+TGG | 0.482781 | 1_4:-22289474 | Msa0156310:CDS |
| TTGGGTTCTTGGAACTCCCC+AGG | 0.483482 | 1_4:-22289616 | Msa0156310:intron |
| TGTAAAGAATGTCATAATCT+GGG | 0.486354 | 1_4:-22290184 | Msa0156310:CDS |
| TGAGTTCTCAAGGAAGAAGT+TGG | 0.488677 | 1_4:-22288730 | Msa0156310:CDS |
| GGCCATTTGTGATGAAATGA+AGG | 0.488889 | 1_4:+22293030 | None:intergenic |
| CCATTCAATGACTCTGCTGC+AGG | 0.499494 | 1_4:+22291983 | None:intergenic |
| GGTGAATGGAAAATAGTTCA+AGG | 0.505213 | 1_4:-22289417 | Msa0156310:intron |
| TTCCTTCAAGATCAATGCAT+TGG | 0.507360 | 1_4:+22290311 | None:intergenic |
| TAAATTATACCTTTAAGAAG+TGG | 0.509514 | 1_4:+22291929 | None:intergenic |
| CGGAGTCAATATTGCTGTCA+TGG | 0.510327 | 1_4:-22291743 | Msa0156310:CDS |
| GTTCTTGTCACTGGTGCCGC+AGG | 0.510375 | 1_4:-22292992 | Msa0156310:intron |
| TTCCCTGTCACCTGTGCCAA+TGG | 0.517722 | 1_4:-22289438 | Msa0156310:CDS |
| TGGCAGCAGCATGCTTCTCA+AGG | 0.517868 | 1_4:+22291635 | None:intergenic |
| TGTCTCTATATACAAGTCTC+AGG | 0.520032 | 1_4:-22291665 | Msa0156310:CDS |
| TCTTGTCCCTATGATTGCTA+GGG | 0.522049 | 1_4:-22292059 | Msa0156310:CDS |
| ATCAAGCATGTGAAGAATCA+CGG | 0.524158 | 1_4:+22292012 | None:intergenic |
| AATATTGCTGTCATGGTTGG+TGG | 0.527412 | 1_4:-22291736 | Msa0156310:CDS |
| GACTAGACTAGATCACAATA+GGG | 0.527987 | 1_4:-22290250 | Msa0156310:CDS |
| TTTCCATTCACCATTGGCAC+AGG | 0.528068 | 1_4:+22289428 | None:intergenic |
| CCTGCAGCAGAGTCATTGAA+TGG | 0.529172 | 1_4:-22291983 | Msa0156310:CDS |
| ATTCCCAAGAAAAGAAGGTA+TGG | 0.532607 | 1_4:-22291713 | Msa0156310:CDS |
| TCAATGGGAGTGTATTCTGA+TGG | 0.534652 | 1_4:-22289495 | Msa0156310:CDS |
| TCACCTGTGCCAATGGTGAA+TGG | 0.535072 | 1_4:-22289431 | Msa0156310:CDS |
| CGTTATCACTTAGATGCTGT+CGG | 0.537314 | 1_4:-22288337 | Msa0156310:three_prime_UTR |
| GTCAATATTGCTGTCATGGT+TGG | 0.540892 | 1_4:-22291739 | Msa0156310:CDS |
| CACCATTGGCACAGGTGACA+GGG | 0.547097 | 1_4:+22289436 | None:intergenic |
| AATTCATAATGAACAGTCCA+TGG | 0.549218 | 1_4:+22288406 | None:intergenic |
| TGGAGTTAAAATGGAGTTGG+TGG | 0.549300 | 1_4:-22291963 | Msa0156310:CDS |
| GAAAGGGATTACCTTGCAGT+TGG | 0.551890 | 1_4:+22291615 | None:intergenic |
| TTTCAATTGATGAGTTCTCA+AGG | 0.554558 | 1_4:-22288740 | Msa0156310:CDS |
| GGTGGATTCCCAAGAAAAGA+AGG | 0.558887 | 1_4:-22291718 | Msa0156310:CDS |
| TCAAGCATGTGAAGAATCAC+GGG | 0.563379 | 1_4:+22292013 | None:intergenic |
| GACGGGCTTCTCCCCAGCTG+GGG | 0.574611 | 1_4:+22290110 | None:intergenic |
| GAATGGAGTTAAAATGGAGT+TGG | 0.576011 | 1_4:-22291966 | Msa0156310:CDS |
| TCACTCCCCTAGCAATCATA+GGG | 0.576220 | 1_4:+22292053 | None:intergenic |
| CAAGAACCCAATCGCGAATG+TGG | 0.578729 | 1_4:+22289628 | None:intergenic |
| GATGTTGTTGAGGCATGCAC+CGG | 0.579449 | 1_4:-22291763 | Msa0156310:CDS |
| TCAATGCATTGGTGTTTGCT+GGG | 0.583030 | 1_4:+22290322 | None:intergenic |
| ATTGCTAGGGGAGTGATGCT+CGG | 0.583162 | 1_4:-22292046 | Msa0156310:CDS |
| GCATGCTGCTGCCAACTGCA+AGG | 0.584268 | 1_4:-22291626 | Msa0156310:intron |
| TTAGATTCTACCAGGTATGG+TGG | 0.585031 | 1_4:-22288300 | Msa0156310:three_prime_UTR |
| CAACTGTTAACACCCCAGCT+GGG | 0.586874 | 1_4:-22290122 | Msa0156310:CDS |
| ATGGTTGACATCAGGATACT+GGG | 0.588881 | 1_4:+22290146 | None:intergenic |
| CTGGGGTGTTAACAGTTGCA+TGG | 0.591846 | 1_4:+22290127 | None:intergenic |
| TCGGAAACAAGTTGACGGAC+GGG | 0.596905 | 1_4:+22290093 | None:intergenic |
| TTTGCAAAATAAAGTCACCA+TGG | 0.597784 | 1_4:-22288423 | Msa0156310:three_prime_UTR |
| GTCGGAAACAAGTTGACGGA+CGG | 0.602916 | 1_4:+22290092 | None:intergenic |
| TGCTACAACCGATGTTGTTG+AGG | 0.602981 | 1_4:-22291773 | Msa0156310:CDS |
| GGCAGCAGCATGCTTCTCAA+GGG | 0.606803 | 1_4:+22291636 | None:intergenic |
| AAAATAAAGCAGCCTAAGAG+AGG | 0.609879 | 1_4:+22288658 | None:intergenic |
| CAGTGACAAGAACACGAACT+GGG | 0.614915 | 1_4:+22293002 | None:intergenic |
| CATCGTCGGAAACAAGTTGA+CGG | 0.615176 | 1_4:+22290088 | None:intergenic |
| GCCATTTGTGATGAAATGAA+GGG | 0.618174 | 1_4:+22293031 | None:intergenic |
| CAAGAAAAGAAGGTATGGAG+AGG | 0.633211 | 1_4:-22291708 | Msa0156310:CDS |
| TGTGATATACCATGCATCGT+CGG | 0.641057 | 1_4:+22290074 | None:intergenic |
| CTTGTCCCTATGATTGCTAG+GGG | 0.642364 | 1_4:-22292058 | Msa0156310:CDS |
| AACTGTTAACACCCCAGCTG+GGG | 0.642403 | 1_4:-22290121 | Msa0156310:CDS |
| AATGAATAGATCAATCCAGA+TGG | 0.645749 | 1_4:+22289459 | None:intergenic |
| GTAAAGAATGTCATAATCTG+GGG | 0.647423 | 1_4:-22290183 | Msa0156310:CDS |
| CATGACAGCAATATTGACTC+CGG | 0.647831 | 1_4:+22291744 | None:intergenic |
| GACAGCCGAAGAGCTGACTG+AGG | 0.649625 | 1_4:-22288703 | Msa0156310:CDS |
| GGTGCATGCCTCAACAACAT+CGG | 0.650776 | 1_4:+22291765 | None:intergenic |
| ATACACTCCCATTGAAACGA+AGG | 0.652020 | 1_4:+22289503 | None:intergenic |
| AGCACCACGTTGTTGAACAG+TGG | 0.672850 | 1_4:+22289710 | None:intergenic |
| TTGCATGATACTCAATCACA+AGG | 0.684957 | 1_4:+22288450 | None:intergenic |
| ATTTCCACTGTTCAACAACG+TGG | 0.687346 | 1_4:-22289714 | Msa0156310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATTTTTATTTTTT+TGG | - | chr1_4:22290973-22290992 | Msa0156310:intron | 0.0% |
| !!! | TTTTTCAATATATACAATAT+TGG | + | chr1_4:22289874-22289893 | None:intergenic | 10.0% |
| !! | AATATTGTATATATTGAAAA+AGG | - | chr1_4:22289873-22289892 | Msa0156310:intron | 10.0% |
| !! | ATATTGTATATATTGAAAAA+GGG | - | chr1_4:22289874-22289893 | Msa0156310:intron | 10.0% |
| !!! | TTTTAAGTAAAGATTCAATT+TGG | - | chr1_4:22288758-22288777 | Msa0156310:intron | 15.0% |
| !!! | CTAATTTAATTTTGATCTAA+TGG | - | chr1_4:22289208-22289227 | Msa0156310:intron | 15.0% |
| !! | AGTATATGAAACATTTAATA+TGG | + | chr1_4:22289469-22289488 | None:intergenic | 15.0% |
| !! | ATATTAAATGTTTCATATAC+TGG | - | chr1_4:22289468-22289487 | Msa0156310:CDS | 15.0% |
| !!! | TCAATTTTGTTTAAAAAACT+TGG | + | chr1_4:22289983-22290002 | None:intergenic | 15.0% |
| !!! | TGATTATTGATAATGTTATA+TGG | + | chr1_4:22290128-22290147 | None:intergenic | 15.0% |
| !! | GATCTTTATAAAATTGAAAA+TGG | + | chr1_4:22290202-22290221 | None:intergenic | 15.0% |
| !!! | TAATAACAGAATTTTATGTA+AGG | + | chr1_4:22290404-22290423 | None:intergenic | 15.0% |
| !! | AATTTATTAGGAAAAAAACA+GGG | + | chr1_4:22290467-22290486 | None:intergenic | 15.0% |
| !! | AAATTTATTAGGAAAAAAAC+AGG | + | chr1_4:22290468-22290487 | None:intergenic | 15.0% |
| !! | CAAAGAATAACAAATTTATT+AGG | + | chr1_4:22290479-22290498 | None:intergenic | 15.0% |
| !!! | CTAATAAATTTGTTATTCTT+TGG | - | chr1_4:22290477-22290496 | Msa0156310:intron | 15.0% |
| !! | TATATTCAATCATAGTTTAT+TGG | + | chr1_4:22290643-22290662 | None:intergenic | 15.0% |
| !! | TTTAGTTGAAAATTTAAAGA+GGG | + | chr1_4:22292187-22292206 | None:intergenic | 15.0% |
| !! | TTCTAATGAAATTGAAATTA+TGG | - | chr1_4:22292335-22292354 | Msa0156310:intron | 15.0% |
| !! | TACAAAATTTAACTCAAATT+TGG | + | chr1_4:22292569-22292588 | None:intergenic | 15.0% |
| !!! | AATTTGAGTTAAATTTTGTA+CGG | - | chr1_4:22292569-22292588 | Msa0156310:intron | 15.0% |
| !! | AAAAACATAGATCAAAACAT+GGG | + | chr1_4:22288458-22288477 | None:intergenic | 20.0% |
| !! | AAAAAAATCATCAGAAAACA+TGG | + | chr1_4:22288509-22288528 | None:intergenic | 20.0% |
| !! | ATATAAAAAAGTGACTAATG+TGG | + | chr1_4:22288832-22288851 | None:intergenic | 20.0% |
| !!! | AGTTTGGATTTATTTTTTGT+CGG | - | chr1_4:22288924-22288943 | Msa0156310:intron | 20.0% |
| !! | ATAATATTCTGTCAAATTTC+AGG | - | chr1_4:22289271-22289290 | Msa0156310:intron | 20.0% |
| !! | TAATATTCTGTCAAATTTCA+GGG | - | chr1_4:22289272-22289291 | Msa0156310:intron | 20.0% |
| !!! | TAAATTATACCTTTAAGAAG+TGG | + | chr1_4:22289442-22289461 | None:intergenic | 20.0% |
| !! | ATATGAAACATTTAATATGG+AGG | + | chr1_4:22289466-22289485 | None:intergenic | 20.0% |
| !!! | AAATGTAATGATGTTTTTTG+AGG | + | chr1_4:22289948-22289967 | None:intergenic | 20.0% |
| !! | ACCTATAAAATTTCATTTCT+TGG | - | chr1_4:22290228-22290247 | Msa0156310:CDS | 20.0% |
| !!! | ACCAAGAAATGAAATTTTAT+AGG | + | chr1_4:22290232-22290251 | None:intergenic | 20.0% |
| !! | AAAAAACTTAGTTGTTGTAT+CGG | - | chr1_4:22290589-22290608 | Msa0156310:intron | 20.0% |
| !! | ATCATATGGATATATGAATT+AGG | + | chr1_4:22290862-22290881 | None:intergenic | 20.0% |
| !!! | TTTTTTGGAAAATTTACAGA+AGG | - | chr1_4:22290988-22291007 | Msa0156310:intron | 20.0% |
| !!! | ATTTTTAGACGTTGTTTTAT+AGG | - | chr1_4:22291344-22291363 | Msa0156310:intron | 20.0% |
| !! | AGATCATAAATAGTTAAGAA+TGG | + | chr1_4:22291406-22291425 | None:intergenic | 20.0% |
| !! | TACAAAAACAACAGTTAAAA+AGG | - | chr1_4:22291536-22291555 | Msa0156310:intron | 20.0% |
| !!! | ATGGTTTGTAAAAACAAAAA+AGG | + | chr1_4:22292094-22292113 | None:intergenic | 20.0% |
| !! | CTTTAGTTGAAAATTTAAAG+AGG | + | chr1_4:22292188-22292207 | None:intergenic | 20.0% |
| !! | ATATAGCAAATAATAAACAC+CGG | + | chr1_4:22292237-22292256 | None:intergenic | 20.0% |
| !!! | GTTTTATTGAAAGTAAAGAA+AGG | + | chr1_4:22292260-22292279 | None:intergenic | 20.0% |
| !! | ACTAGAAAAAGAATATAAAC+TGG | + | chr1_4:22292362-22292381 | None:intergenic | 20.0% |
| !!! | TTGTATTCTTTTACAATTTC+TGG | - | chr1_4:22292395-22292414 | Msa0156310:intron | 20.0% |
| !!! | TTTTTTTTTTAGATTCTACC+AGG | - | chr1_4:22293060-22293079 | Msa0156310:five_prime_UTR | 20.0% |
| !!! | AGAAAGAAGAGTTTTTGTTT+CGG | + | chr1_4:22288290-22288309 | None:intergenic | 25.0% |
| ! | CAAAAACATAGATCAAAACA+TGG | + | chr1_4:22288459-22288478 | None:intergenic | 25.0% |
| !!! | TTAGTCACTTTTTTATATCG+AGG | - | chr1_4:22288834-22288853 | Msa0156310:intron | 25.0% |
| !!! | GTTTGGATTTATTTTTTGTC+GGG | - | chr1_4:22288925-22288944 | Msa0156310:intron | 25.0% |
| !!! | TTTGGATTTATTTTTTGTCG+GGG | - | chr1_4:22288926-22288945 | Msa0156310:intron | 25.0% |
| ! | AATTAGACGATCTAGATTAA+TGG | + | chr1_4:22289194-22289213 | None:intergenic | 25.0% |
| ! | TAAATGTTTCATATACTGGA+TGG | - | chr1_4:22289472-22289491 | Msa0156310:CDS | 25.0% |
| ! | AAATGTTTCATATACTGGAT+GGG | - | chr1_4:22289473-22289492 | Msa0156310:CDS | 25.0% |
| !! | TTGAAATCTTTGATTCGATA+TGG | - | chr1_4:22289496-22289515 | Msa0156310:CDS | 25.0% |
| ! | TGTGTGAAATTATTTGTTTC+AGG | - | chr1_4:22289566-22289585 | Msa0156310:intron | 25.0% |
| ! | TTTGAATGTCTACCAAAATA+TGG | + | chr1_4:22290031-22290050 | None:intergenic | 25.0% |
| !! | TTTCTTGGTAATAAAACTTG+TGG | - | chr1_4:22290243-22290262 | Msa0156310:CDS | 25.0% |
| ! | GATAGAAAATGCATACAAAA+GGG | + | chr1_4:22290315-22290334 | None:intergenic | 25.0% |
| ! | AATCGATATGAACTACTAAT+TGG | + | chr1_4:22290337-22290356 | None:intergenic | 25.0% |
| !! | AATTTTATGTAAGGTCAGAT+TGG | + | chr1_4:22290395-22290414 | None:intergenic | 25.0% |
| !!! | TAAGTTTTTTGCGACTAAAT+GGG | + | chr1_4:22290579-22290598 | None:intergenic | 25.0% |
| ! | ATATGGATATATGAATTAGG+TGG | + | chr1_4:22290859-22290878 | None:intergenic | 25.0% |
| ! | ATGAATAAAATTAGACTCCT+TGG | + | chr1_4:22290906-22290925 | None:intergenic | 25.0% |
| !!! | CTGCTTGTTTTCAAATAAAA+AGG | + | chr1_4:22290939-22290958 | None:intergenic | 25.0% |
| ! | TTATTTGAAAACAAGCAGTT+TGG | - | chr1_4:22290941-22290960 | Msa0156310:intron | 25.0% |
| ! | AAACAAGAAATGTTTCTTTC+TGG | + | chr1_4:22291098-22291117 | None:intergenic | 25.0% |
| ! | AACTTGAACATTCAATCTTT+CGG | + | chr1_4:22291159-22291178 | None:intergenic | 25.0% |
| ! | ATGTAAAGAATGTCATAATC+TGG | - | chr1_4:22291183-22291202 | Msa0156310:intron | 25.0% |
| ! | TGTAAAGAATGTCATAATCT+GGG | - | chr1_4:22291184-22291203 | Msa0156310:intron | 25.0% |
| ! | ATAATACCCTTCACTATTTA+TGG | + | chr1_4:22291450-22291469 | None:intergenic | 25.0% |
| !!! | TTTTCTCTATTTAGGTTGAA+TGG | - | chr1_4:22291624-22291643 | Msa0156310:intron | 25.0% |
| !! | TTCTTTTCCATTGTAATGTT+AGG | - | chr1_4:22291839-22291858 | Msa0156310:intron | 25.0% |
| !! | TCTTTTCCATTGTAATGTTA+GGG | - | chr1_4:22291840-22291859 | Msa0156310:intron | 25.0% |
| ! | ATAGTTCATTTGTATCTAGA+AGG | + | chr1_4:22292774-22292793 | None:intergenic | 25.0% |
| TTTCGATCTTGATCTGTTAA+TGG | - | chr1_4:22288573-22288592 | Msa0156310:three_prime_UTR | 30.0% | |
| TTCGATCTTGATCTGTTAAT+GGG | - | chr1_4:22288574-22288593 | Msa0156310:three_prime_UTR | 30.0% | |
| CGATCTGTCATAATGAATTA+GGG | + | chr1_4:22288870-22288889 | None:intergenic | 30.0% | |
| TCGATCTGTCATAATGAATT+AGG | + | chr1_4:22288871-22288890 | None:intergenic | 30.0% | |
| GAAAGTTGCATTCTCATAAT+TGG | - | chr1_4:22289109-22289128 | Msa0156310:intron | 30.0% | |
| !! | ATTTTGATCTAATGGCATGA+AGG | - | chr1_4:22289216-22289235 | Msa0156310:intron | 30.0% |
| ! | TTTTGATCTAATGGCATGAA+GGG | - | chr1_4:22289217-22289236 | Msa0156310:intron | 30.0% |
| GTCATTGAATGGAGTTAAAA+TGG | - | chr1_4:22289396-22289415 | Msa0156310:intron | 30.0% | |
| AGTCTGAGTTTATGATGAAA+GGG | + | chr1_4:22289772-22289791 | None:intergenic | 30.0% | |
| AAGTCTGAGTTTATGATGAA+AGG | + | chr1_4:22289773-22289792 | None:intergenic | 30.0% | |
| ! | TCAAAATCCCTACCATATTT+TGG | - | chr1_4:22290016-22290035 | Msa0156310:intron | 30.0% |
| ATGTCTACCAAAATATGGTA+GGG | + | chr1_4:22290026-22290045 | None:intergenic | 30.0% | |
| AATGTCTACCAAAATATGGT+AGG | + | chr1_4:22290027-22290046 | None:intergenic | 30.0% | |
| GGATAGAAAATGCATACAAA+AGG | + | chr1_4:22290316-22290335 | None:intergenic | 30.0% | |
| TCTTCTACTATAGAACACTA+TGG | - | chr1_4:22290535-22290554 | Msa0156310:intron | 30.0% | |
| !!! | AAGTTTTTTGCGACTAAATG+GGG | + | chr1_4:22290578-22290597 | None:intergenic | 30.0% |
| !!! | CTAAGTTTTTTGCGACTAAA+TGG | + | chr1_4:22290580-22290599 | None:intergenic | 30.0% |
| ! | TTTTCGCAATGAAGACATTA+AGG | - | chr1_4:22290680-22290699 | Msa0156310:intron | 30.0% |
| TTTCGCAATGAAGACATTAA+GGG | - | chr1_4:22290681-22290700 | Msa0156310:intron | 30.0% | |
| ! | GCAAATTTTCACATGAAATC+AGG | - | chr1_4:22290819-22290838 | Msa0156310:intron | 30.0% |
| !! | ATGTTTCTTTCTGGAATAGA+TGG | + | chr1_4:22291089-22291108 | None:intergenic | 30.0% |
| CATTCAATCTTTCGGAAATT+TGG | + | chr1_4:22291151-22291170 | None:intergenic | 30.0% | |
| GTAAAGAATGTCATAATCTG+GGG | - | chr1_4:22291185-22291204 | Msa0156310:intron | 30.0% | |
| TATTTATGGCAGAGAGTAAT+AGG | + | chr1_4:22291436-22291455 | None:intergenic | 30.0% | |
| AACAACAGTTAAAAAGGAAC+TGG | - | chr1_4:22291542-22291561 | Msa0156310:intron | 30.0% | |
| ACAACAGTTAAAAAGGAACT+GGG | - | chr1_4:22291543-22291562 | Msa0156310:intron | 30.0% | |
| ! | GTTCCAACTTTTCTCTATTT+AGG | - | chr1_4:22291616-22291635 | Msa0156310:intron | 30.0% |
| CAACCTAAATAGAGAAAAGT+TGG | + | chr1_4:22291622-22291641 | None:intergenic | 30.0% | |
| AATTAAAATGTAGCCAACCT+GGG | + | chr1_4:22291772-22291791 | None:intergenic | 30.0% | |
| AAATTAAAATGTAGCCAACC+TGG | + | chr1_4:22291773-22291792 | None:intergenic | 30.0% | |
| AATGAATAGATCAATCCAGA+TGG | + | chr1_4:22291912-22291931 | None:intergenic | 30.0% | |
| ! | AACTATTTTCCATTCACCAT+TGG | + | chr1_4:22291949-22291968 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTTTGTTGATAAC+TGG | - | chr1_4:22292028-22292047 | Msa0156310:CDS | 30.0% |
| ACCTGTATATTCACTTTACT+CGG | - | chr1_4:22292057-22292076 | Msa0156310:CDS | 30.0% | |
| TTCAACACTTATGATTGTGA+TGG | + | chr1_4:22292122-22292141 | None:intergenic | 30.0% | |
| GAGGATTGTAAAATCAAGTA+TGG | + | chr1_4:22292294-22292313 | None:intergenic | 30.0% | |
| AATGAATCATGTGACTTTAG+AGG | - | chr1_4:22292504-22292523 | Msa0156310:intron | 30.0% | |
| TTTCAATTGATGAGTTCTCA+AGG | - | chr1_4:22292628-22292647 | Msa0156310:intron | 30.0% | |
| ! | ATTGCAAGTCTAACAGATTT+TGG | - | chr1_4:22292821-22292840 | Msa0156310:intron | 30.0% |
| ACAAGAATTTCGATGTTTGT+TGG | - | chr1_4:22292857-22292876 | Msa0156310:intron | 30.0% | |
| CAAGAATTTCGATGTTTGTT+GGG | - | chr1_4:22292858-22292877 | Msa0156310:intron | 30.0% | |
| TTTGCAAAATAAAGTCACCA+TGG | - | chr1_4:22292945-22292964 | Msa0156310:intron | 30.0% | |
| AATTCATAATGAACAGTCCA+TGG | + | chr1_4:22292965-22292984 | None:intergenic | 30.0% | |
| ! | TTTTTAGATTCTACCAGGTA+TGG | - | chr1_4:22293065-22293084 | Msa0156310:five_prime_UTR | 30.0% |
| ! | TGCACAAGCTTACAATTTTA+GGG | - | chr1_4:22293118-22293137 | Msa0156310:five_prime_UTR | 30.0% |
| TGTTTGTGTTGTGTGATTTG+TGG | + | chr1_4:22288249-22288268 | None:intergenic | 35.0% | |
| GAAATGAAGGGAATCGAAAA+TGG | + | chr1_4:22288328-22288347 | None:intergenic | 35.0% | |
| TCCCTTCATTTCATCACAAA+TGG | - | chr1_4:22288336-22288355 | Msa0156310:three_prime_UTR | 35.0% | |
| GCCATTTGTGATGAAATGAA+GGG | + | chr1_4:22288340-22288359 | None:intergenic | 35.0% | |
| AAACAGTAGAGAAGAGATCA+TGG | + | chr1_4:22288416-22288435 | None:intergenic | 35.0% | |
| ! | TCTCTACTGTTTCTTCACTT+TGG | - | chr1_4:22288424-22288443 | Msa0156310:three_prime_UTR | 35.0% |
| CAGAAAACATGGTTAGATCA+TGG | + | chr1_4:22288498-22288517 | None:intergenic | 35.0% | |
| !! | TCTTGATCTGTTAATGGGTT+CGG | - | chr1_4:22288579-22288598 | Msa0156310:three_prime_UTR | 35.0% |
| TAATGTGGATTTATCGTGTC+GGG | + | chr1_4:22288817-22288836 | None:intergenic | 35.0% | |
| CTAATGTGGATTTATCGTGT+CGG | + | chr1_4:22288818-22288837 | None:intergenic | 35.0% | |
| TGTCCCAGGTATAAAAATGT+CGG | - | chr1_4:22288897-22288916 | Msa0156310:intron | 35.0% | |
| TAAAAATGTCGGCACTAGTT+TGG | - | chr1_4:22288908-22288927 | Msa0156310:intron | 35.0% | |
| !!! | TTTTTTGTCGGGGACTTAAT+TGG | - | chr1_4:22288936-22288955 | Msa0156310:intron | 35.0% |
| AAAATCGTGAGGGAACAAAT+TGG | - | chr1_4:22288967-22288986 | Msa0156310:intron | 35.0% | |
| AAATCGTGAGGGAACAAATT+GGG | - | chr1_4:22288968-22288987 | Msa0156310:intron | 35.0% | |
| TGTCCAAATTTCATGTGTAG+TGG | - | chr1_4:22289049-22289068 | Msa0156310:intron | 35.0% | |
| GTCCAAATTTCATGTGTAGT+GGG | - | chr1_4:22289050-22289069 | Msa0156310:intron | 35.0% | |
| AACCCACTACACATGAAATT+TGG | + | chr1_4:22289055-22289074 | None:intergenic | 35.0% | |
| AGACGATCTAGATTAATGGT+CGG | + | chr1_4:22289190-22289209 | None:intergenic | 35.0% | |
| TGTCAAATTTCAGGGCAAAT+TGG | - | chr1_4:22289280-22289299 | Msa0156310:intron | 35.0% | |
| ATCAAGCATGTGAAGAATCA+CGG | + | chr1_4:22289359-22289378 | None:intergenic | 35.0% | |
| GAATGGAGTTAAAATGGAGT+TGG | - | chr1_4:22289402-22289421 | Msa0156310:intron | 35.0% | |
| ATTCCCAAGAAAAGAAGGTA+TGG | - | chr1_4:22289655-22289674 | Msa0156310:CDS | 35.0% | |
| ! | TCTCCATACCTTCTTTTCTT+GGG | + | chr1_4:22289661-22289680 | None:intergenic | 35.0% |
| TGTCTCTATATACAAGTCTC+AGG | - | chr1_4:22289703-22289722 | Msa0156310:CDS | 35.0% | |
| CTTTGTATCCAATGTTGCAA+TGG | - | chr1_4:22289799-22289818 | Msa0156310:intron | 35.0% | |
| ! | AATGGACTTTGTCATGTCAT+CGG | - | chr1_4:22289817-22289836 | Msa0156310:intron | 35.0% |
| TATATTGAAAAAGGGAAGCC+CGG | - | chr1_4:22289882-22289901 | Msa0156310:intron | 35.0% | |
| TTCACATGAAATCAGGTGTA+TGG | - | chr1_4:22290826-22290845 | Msa0156310:intron | 35.0% | |
| TCACATGAAATCAGGTGTAT+GGG | - | chr1_4:22290827-22290846 | Msa0156310:intron | 35.0% | |
| ATCACATGGACTTCATCATA+TGG | + | chr1_4:22290876-22290895 | None:intergenic | 35.0% | |
| !! | AAGGCTTTGAAATATCTTGC+AGG | - | chr1_4:22291007-22291026 | Msa0156310:intron | 35.0% |
| TTGAAATATCTTGCAGGTTC+TGG | - | chr1_4:22291013-22291032 | Msa0156310:intron | 35.0% | |
| TTCCTTCAAGATCAATGCAT+TGG | + | chr1_4:22291060-22291079 | None:intergenic | 35.0% | |
| TGACTAGACTAGATCACAAT+AGG | - | chr1_4:22291117-22291136 | Msa0156310:intron | 35.0% | |
| GACTAGACTAGATCACAATA+GGG | - | chr1_4:22291118-22291137 | Msa0156310:intron | 35.0% | |
| TCTCTGCCATAAATAGTGAA+GGG | - | chr1_4:22291441-22291460 | Msa0156310:intron | 35.0% | |
| CAACAGTTAAAAAGGAACTG+GGG | - | chr1_4:22291544-22291563 | Msa0156310:intron | 35.0% | |
| AACAGTTAAAAAGGAACTGG+GGG | - | chr1_4:22291545-22291564 | Msa0156310:intron | 35.0% | |
| ATTAAAATGTAGCCAACCTG+GGG | + | chr1_4:22291771-22291790 | None:intergenic | 35.0% | |
| TTCTGTATTTGCTTCCAGAT+CGG | - | chr1_4:22291810-22291829 | Msa0156310:intron | 35.0% | |
| GAAAAGAAAATAAGCCGATC+TGG | + | chr1_4:22291827-22291846 | None:intergenic | 35.0% | |
| ! | AAGGTACCCTAACATTACAA+TGG | + | chr1_4:22291849-22291868 | None:intergenic | 35.0% |
| GGTGAATGGAAAATAGTTCA+AGG | - | chr1_4:22291951-22291970 | Msa0156310:CDS | 35.0% | |
| ! | AAATGTTTCCCCTCAGTTTT+TGG | - | chr1_4:22292011-22292030 | Msa0156310:CDS | 35.0% |
| AACAAACACCAAAAACTGAG+GGG | + | chr1_4:22292022-22292041 | None:intergenic | 35.0% | |
| CAACAAACACCAAAAACTGA+GGG | + | chr1_4:22292023-22292042 | None:intergenic | 35.0% | |
| TCAACAAACACCAAAAACTG+AGG | + | chr1_4:22292024-22292043 | None:intergenic | 35.0% | |
| ACCGAGTAAAGTGAATATAC+AGG | + | chr1_4:22292061-22292080 | None:intergenic | 35.0% | |
| !! | TATGATTGTGATGGATGGTA+TGG | + | chr1_4:22292113-22292132 | None:intergenic | 35.0% |
| ! | ACACTTATGATTGTGATGGA+TGG | + | chr1_4:22292118-22292137 | None:intergenic | 35.0% |
| ATAACAAAAACCGCCAACTT+AGG | + | chr1_4:22292156-22292175 | None:intergenic | 35.0% | |
| !! | AACCCTCATACTTAATTTGC+CGG | - | chr1_4:22292215-22292234 | Msa0156310:intron | 35.0% |
| TTTACAATCCTCATACTCCT+TGG | - | chr1_4:22292302-22292321 | Msa0156310:intron | 35.0% | |
| !!! | TCTTCACCTTTTTTATCCAC+AGG | - | chr1_4:22292603-22292622 | Msa0156310:intron | 35.0% |
| GAAAGTCCTGTGGATAAAAA+AGG | + | chr1_4:22292612-22292631 | None:intergenic | 35.0% | |
| AAAATAAAGCAGCCTAAGAG+AGG | + | chr1_4:22292713-22292732 | None:intergenic | 35.0% | |
| TTGCATGATACTCAATCACA+AGG | + | chr1_4:22292921-22292940 | None:intergenic | 35.0% | |
| ! | GTGCACAAGCTTACAATTTT+AGG | - | chr1_4:22293117-22293136 | Msa0156310:five_prime_UTR | 35.0% |
| ! | GCACAAGCTTACAATTTTAG+GGG | - | chr1_4:22293119-22293138 | Msa0156310:five_prime_UTR | 35.0% |
| GGCCATTTGTGATGAAATGA+AGG | + | chr1_4:22288341-22288360 | None:intergenic | 40.0% | |
| ! | GAAGAGATCATGGTGATGAA+AGG | + | chr1_4:22288406-22288425 | None:intergenic | 40.0% |
| TATCGTGTCGGGGAATAAAT+TGG | + | chr1_4:22288806-22288825 | None:intergenic | 40.0% | |
| AATGTGGATTTATCGTGTCG+GGG | + | chr1_4:22288816-22288835 | None:intergenic | 40.0% | |
| !! | GTGCCGACATTTTTATACCT+GGG | + | chr1_4:22288903-22288922 | None:intergenic | 40.0% |
| !!! | AGTGCCGACATTTTTATACC+TGG | + | chr1_4:22288904-22288923 | None:intergenic | 40.0% |
| CATTGTGCGAAATTGTGATG+TGG | - | chr1_4:22289077-22289096 | Msa0156310:intron | 40.0% | |
| ATTGGAAATGTAGCGACTAC+TGG | - | chr1_4:22289127-22289146 | Msa0156310:intron | 40.0% | |
| CGACTACTGGATTTAATCTG+CGG | - | chr1_4:22289140-22289159 | Msa0156310:intron | 40.0% | |
| TCTTGTCCCTATGATTGCTA+GGG | - | chr1_4:22289309-22289328 | Msa0156310:intron | 40.0% | |
| TCAAGCATGTGAAGAATCAC+GGG | + | chr1_4:22289358-22289377 | None:intergenic | 40.0% | |
| TGGAGTTAAAATGGAGTTGG+TGG | - | chr1_4:22289405-22289424 | Msa0156310:intron | 40.0% | |
| GCTGCATTTCCACTTCTTAA+AGG | - | chr1_4:22289430-22289449 | Msa0156310:CDS | 40.0% | |
| !! | CATGACAGCAATATTGACTC+CGG | + | chr1_4:22289627-22289646 | None:intergenic | 40.0% |
| GTCAATATTGCTGTCATGGT+TGG | - | chr1_4:22289629-22289648 | Msa0156310:CDS | 40.0% | |
| AATATTGCTGTCATGGTTGG+TGG | - | chr1_4:22289632-22289651 | Msa0156310:CDS | 40.0% | |
| ! | CTCTCCATACCTTCTTTTCT+TGG | + | chr1_4:22289662-22289681 | None:intergenic | 40.0% |
| ! | CAAGAAAAGAAGGTATGGAG+AGG | - | chr1_4:22289660-22289679 | Msa0156310:CDS | 40.0% |
| ! | AAAAGAAGGTATGGAGAGGA+AGG | - | chr1_4:22289664-22289683 | Msa0156310:CDS | 40.0% |
| GACAAAGTCCATTGCAACAT+TGG | + | chr1_4:22289810-22289829 | None:intergenic | 40.0% | |
| ATGGACTTTGTCATGTCATC+GGG | - | chr1_4:22289818-22289837 | Msa0156310:intron | 40.0% | |
| ATTAAAGCTCCTGCATATGC+AGG | - | chr1_4:22289908-22289927 | Msa0156310:intron | 40.0% | |
| TTAAAGCTCCTGCATATGCA+GGG | - | chr1_4:22289909-22289928 | Msa0156310:intron | 40.0% | |
| AAAACTTGTGGTTGAACCAG+CGG | - | chr1_4:22290255-22290274 | Msa0156310:CDS | 40.0% | |
| GACAAATTTAGTAGTACCGC+TGG | + | chr1_4:22290274-22290293 | None:intergenic | 40.0% | |
| TTATGTAAGGTCAGATTGGC+TGG | + | chr1_4:22290391-22290410 | None:intergenic | 40.0% | |
| ! | GAAGACATTAAGGGTGTGTT+TGG | - | chr1_4:22290690-22290709 | Msa0156310:intron | 40.0% |
| ! | ACATTAAGGGTGTGTTTGGA+TGG | - | chr1_4:22290694-22290713 | Msa0156310:intron | 40.0% |
| ! | TCAATGCATTGGTGTTTGCT+GGG | + | chr1_4:22291049-22291068 | None:intergenic | 40.0% |
| ! | ATCAATGCATTGGTGTTTGC+TGG | + | chr1_4:22291050-22291069 | None:intergenic | 40.0% |
| ! | CACCAATGCATTGATCTTGA+AGG | - | chr1_4:22291055-22291074 | Msa0156310:intron | 40.0% |
| ACTAGATCACAATAGGGCTT+TGG | - | chr1_4:22291124-22291143 | Msa0156310:intron | 40.0% | |
| CTAGATCACAATAGGGCTTT+GGG | - | chr1_4:22291125-22291144 | Msa0156310:intron | 40.0% | |
| ATGGTTGACATCAGGATACT+GGG | + | chr1_4:22291225-22291244 | None:intergenic | 40.0% | |
| TGTGATATACCATGCATCGT+CGG | + | chr1_4:22291297-22291316 | None:intergenic | 40.0% | |
| CTCTCTGCCATAAATAGTGA+AGG | - | chr1_4:22291440-22291459 | Msa0156310:intron | 40.0% | |
| ATTTCCACTGTTCAACAACG+TGG | - | chr1_4:22291654-22291673 | Msa0156310:CDS | 40.0% | |
| !! | ACGTGGTGCTGCAATTATTA+AGG | - | chr1_4:22291671-22291690 | Msa0156310:CDS | 40.0% |
| ! | TTAGGGTACCTTCGTTTCAA+TGG | - | chr1_4:22291857-22291876 | Msa0156310:intron | 40.0% |
| ! | TAGGGTACCTTCGTTTCAAT+GGG | - | chr1_4:22291858-22291877 | Msa0156310:intron | 40.0% |
| ATACACTCCCATTGAAACGA+AGG | + | chr1_4:22291868-22291887 | None:intergenic | 40.0% | |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr1_4:22291873-22291892 | Msa0156310:intron | 40.0% |
| CAATCCAGATGGTACATTGT+AGG | + | chr1_4:22291901-22291920 | None:intergenic | 40.0% | |
| CACCGGCAAATTAAGTATGA+GGG | + | chr1_4:22292220-22292239 | None:intergenic | 40.0% | |
| ACACCGGCAAATTAAGTATG+AGG | + | chr1_4:22292221-22292240 | None:intergenic | 40.0% | |
| !! | ATTAGAAAAGCACTCCACCA+AGG | + | chr1_4:22292322-22292341 | None:intergenic | 40.0% |
| CTCATCAATTGAAAGTCCTG+TGG | + | chr1_4:22292622-22292641 | None:intergenic | 40.0% | |
| TGAGTTCTCAAGGAAGAAGT+TGG | - | chr1_4:22292638-22292657 | Msa0156310:intron | 40.0% | |
| GCTGACTGAGGAAAAGAATT+TGG | - | chr1_4:22292677-22292696 | Msa0156310:intron | 40.0% | |
| AACTATGAGTGTCTCGTCTT+TGG | - | chr1_4:22292788-22292807 | Msa0156310:intron | 40.0% | |
| !! | CTAACAGATTTTGGTCACAG+TGG | - | chr1_4:22292830-22292849 | Msa0156310:intron | 40.0% |
| CGTTATCACTTAGATGCTGT+CGG | - | chr1_4:22293031-22293050 | Msa0156310:exon | 40.0% | |
| TTAGATTCTACCAGGTATGG+TGG | - | chr1_4:22293068-22293087 | Msa0156310:five_prime_UTR | 40.0% | |
| !! | GAGATTTTAACCACCATACC+TGG | + | chr1_4:22293081-22293100 | None:intergenic | 40.0% |
| AAGAACACGAACTGGGTCTT+TGG | + | chr1_4:22288362-22288381 | None:intergenic | 45.0% | |
| CAGTGACAAGAACACGAACT+GGG | + | chr1_4:22288369-22288388 | None:intergenic | 45.0% | |
| ! | CAGATCGACTTATTTGTCCC+AGG | - | chr1_4:22288883-22288902 | Msa0156310:intron | 45.0% |
| ! | TTCCCTCACGATTTTCTCTC+GGG | + | chr1_4:22288962-22288981 | None:intergenic | 45.0% |
| ! | GTTCCCTCACGATTTTCTCT+CGG | + | chr1_4:22288963-22288982 | None:intergenic | 45.0% |
| CTAATGGCATGAAGGGAATC+TGG | - | chr1_4:22289224-22289243 | Msa0156310:intron | 45.0% | |
| CTCTTGTCCCTATGATTGCT+AGG | - | chr1_4:22289308-22289327 | Msa0156310:intron | 45.0% | |
| CTTGTCCCTATGATTGCTAG+GGG | - | chr1_4:22289310-22289329 | Msa0156310:intron | 45.0% | |
| TCACTCCCCTAGCAATCATA+GGG | + | chr1_4:22289318-22289337 | None:intergenic | 45.0% | |
| ATCACTCCCCTAGCAATCAT+AGG | + | chr1_4:22289319-22289338 | None:intergenic | 45.0% | |
| !! | TGAAGAATCACGGGTTGATC+AGG | + | chr1_4:22289349-22289368 | None:intergenic | 45.0% |
| TGCTACAACCGATGTTGTTG+AGG | - | chr1_4:22289595-22289614 | Msa0156310:intron | 45.0% | |
| CGGAGTCAATATTGCTGTCA+TGG | - | chr1_4:22289625-22289644 | Msa0156310:CDS | 45.0% | |
| ! | GGTGGATTCCCAAGAAAAGA+AGG | - | chr1_4:22289650-22289669 | Msa0156310:CDS | 45.0% |
| GAAAGGGATTACCTTGCAGT+TGG | + | chr1_4:22289756-22289775 | None:intergenic | 45.0% | |
| TTGTCATGTCATCGGGTCAA+TGG | - | chr1_4:22289825-22289844 | Msa0156310:intron | 45.0% | |
| ! | ATGCAGGAGCTTTAATGCAC+CGG | + | chr1_4:22289904-22289923 | None:intergenic | 45.0% |
| ! | GTCAGATTGGCTGGTTCAAT+TGG | + | chr1_4:22290382-22290401 | None:intergenic | 45.0% |
| ACTAAATGGGGTCAGCAACA+TGG | + | chr1_4:22290566-22290585 | None:intergenic | 45.0% | |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr1_4:22290697-22290716 | Msa0156310:intron | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr1_4:22290698-22290717 | Msa0156310:intron | 45.0% |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr1_4:22290704-22290723 | Msa0156310:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+AGG | - | chr1_4:22290708-22290727 | Msa0156310:intron | 45.0% | |
| TTGGATGGAGGGTTTAGGAA+GGG | - | chr1_4:22290709-22290728 | Msa0156310:intron | 45.0% | |
| TCCATGTGATTTCATCGCCA+AGG | - | chr1_4:22290886-22290905 | Msa0156310:intron | 45.0% | |
| TCCTTGGCGATGAAATCACA+TGG | + | chr1_4:22290890-22290909 | None:intergenic | 45.0% | |
| CATGGTTGACATCAGGATAC+TGG | + | chr1_4:22291226-22291245 | None:intergenic | 45.0% | |
| ACAGTTGCATGGTTGACATC+AGG | + | chr1_4:22291233-22291252 | None:intergenic | 45.0% | |
| ! | CATCGTCGGAAACAAGTTGA+CGG | + | chr1_4:22291283-22291302 | None:intergenic | 45.0% |
| ! | AACTTGTTTCCGACGATGCA+TGG | - | chr1_4:22291285-22291304 | Msa0156310:intron | 45.0% |
| TTGTGACCACATTCGCGATT+GGG | - | chr1_4:22291734-22291753 | Msa0156310:CDS | 45.0% | |
| GGTTCCTACAATGTACCATC+TGG | - | chr1_4:22291894-22291913 | Msa0156310:intron | 45.0% | |
| TTTCCATTCACCATTGGCAC+AGG | + | chr1_4:22291943-22291962 | None:intergenic | 45.0% | |
| AAACACCCTCATGCCTAAGT+TGG | - | chr1_4:22292140-22292159 | Msa0156310:intron | 45.0% | |
| ACAATCCTCATACTCCTTGG+TGG | - | chr1_4:22292305-22292324 | Msa0156310:intron | 45.0% | |
| ! | CTTTTCCTCAGTCAGCTCTT+CGG | + | chr1_4:22292673-22292692 | None:intergenic | 45.0% |
| !!! | ATTTTTTTGATTTTAAATAA+TGG | - | chr1_4:22288521-22288540 | Msa0156310:three_prime_UTR | 5.0% |
| !!! | TTTTTTTGATTTTAAATAAT+GGG | - | chr1_4:22288522-22288541 | Msa0156310:three_prime_UTR | 5.0% |
| TGTTTCGGAGAGAGTGAGTG+AGG | + | chr1_4:22288275-22288294 | None:intergenic | 50.0% | |
| CCAGTGACAAGAACACGAAC+TGG | + | chr1_4:22288370-22288389 | None:intergenic | 50.0% | |
| CCAGTTCGTGTTCTTGTCAC+TGG | - | chr1_4:22288367-22288386 | Msa0156310:three_prime_UTR | 50.0% | |
| !! | GGTGATGAAAGGAGTACCTG+CGG | + | chr1_4:22288395-22288414 | None:intergenic | 50.0% |
| GGCATGAAGGGAATCTGGTT+CGG | - | chr1_4:22289229-22289248 | Msa0156310:intron | 50.0% | |
| ATTGCTAGGGGAGTGATGCT+CGG | - | chr1_4:22289322-22289341 | Msa0156310:intron | 50.0% | |
| CCATTCAATGACTCTGCTGC+AGG | + | chr1_4:22289388-22289407 | None:intergenic | 50.0% | |
| CCTGCAGCAGAGTCATTGAA+TGG | - | chr1_4:22289385-22289404 | Msa0156310:intron | 50.0% | |
| GGTGCATGCCTCAACAACAT+CGG | + | chr1_4:22289606-22289625 | None:intergenic | 50.0% | |
| GATGTTGTTGAGGCATGCAC+CGG | - | chr1_4:22289605-22289624 | Msa0156310:intron | 50.0% | |
| ! | TGCAGGAGCTTTAATGCACC+GGG | + | chr1_4:22289903-22289922 | None:intergenic | 50.0% |
| !!! | GTTTTTTGAGGACCCCTTCC+TGG | + | chr1_4:22289936-22289955 | None:intergenic | 50.0% |
| ATGGAGGGTTTAGGAAGGGA+GGG | - | chr1_4:22290713-22290732 | Msa0156310:intron | 50.0% | |
| ! | CTGGGGTGTTAACAGTTGCA+TGG | + | chr1_4:22291244-22291263 | None:intergenic | 50.0% |
| CAACTGTTAACACCCCAGCT+GGG | - | chr1_4:22291246-22291265 | Msa0156310:intron | 50.0% | |
| AACTGTTAACACCCCAGCTG+GGG | - | chr1_4:22291247-22291266 | Msa0156310:intron | 50.0% | |
| ! | TCGGAAACAAGTTGACGGAC+GGG | + | chr1_4:22291278-22291297 | None:intergenic | 50.0% |
| ! | GTCGGAAACAAGTTGACGGA+CGG | + | chr1_4:22291279-22291298 | None:intergenic | 50.0% |
| AGCACCACGTTGTTGAACAG+TGG | + | chr1_4:22291661-22291680 | None:intergenic | 50.0% | |
| CTTGTGACCACATTCGCGAT+TGG | - | chr1_4:22291733-22291752 | Msa0156310:CDS | 50.0% | |
| CAAGAACCCAATCGCGAATG+TGG | + | chr1_4:22291743-22291762 | None:intergenic | 50.0% | |
| CACATTCGCGATTGGGTTCT+TGG | - | chr1_4:22291741-22291760 | Msa0156310:CDS | 50.0% | |
| TCACCTGTGCCAATGGTGAA+TGG | - | chr1_4:22291937-22291956 | Msa0156310:intron | 50.0% | |
| AACCGCCAACTTAGGCATGA+GGG | + | chr1_4:22292148-22292167 | None:intergenic | 50.0% | |
| AAACCGCCAACTTAGGCATG+AGG | + | chr1_4:22292149-22292168 | None:intergenic | 50.0% | |
| TGGCCCGAGAGAAAATCGTG+AGG | - | chr1_4:22288956-22288975 | Msa0156310:intron | 55.0% | |
| GGCCCGAGAGAAAATCGTGA+GGG | - | chr1_4:22288957-22288976 | Msa0156310:intron | 55.0% | |
| GGCAGCAGCATGCTTCTCAA+GGG | + | chr1_4:22289735-22289754 | None:intergenic | 55.0% | |
| TGGCAGCAGCATGCTTCTCA+AGG | + | chr1_4:22289736-22289755 | None:intergenic | 55.0% | |
| TTCCTGGACCCTGCATATGC+AGG | + | chr1_4:22289920-22289939 | None:intergenic | 55.0% | |
| TGCATATGCAGGGTCCAGGA+AGG | - | chr1_4:22289919-22289938 | Msa0156310:intron | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | - | chr1_4:22289920-22289939 | Msa0156310:intron | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | - | chr1_4:22289921-22289940 | Msa0156310:intron | 55.0% | |
| ! | CGGCTTGTTTGCGACTATGC+TGG | - | chr1_4:22290609-22290628 | Msa0156310:intron | 55.0% |
| GATGGAGGGTTTAGGAAGGG+AGG | - | chr1_4:22290712-22290731 | Msa0156310:intron | 55.0% | |
| AGGGTTTAGGAAGGGAGGGA+AGG | - | chr1_4:22290717-22290736 | Msa0156310:intron | 55.0% | |
| GGGTTTAGGAAGGGAGGGAA+GGG | - | chr1_4:22290718-22290737 | Msa0156310:intron | 55.0% | |
| GCAACTGTTAACACCCCAGC+TGG | - | chr1_4:22291245-22291264 | Msa0156310:intron | 55.0% | |
| TTGGGTTCTTGGAACTCCCC+AGG | - | chr1_4:22291752-22291771 | Msa0156310:CDS | 55.0% | |
| GTTCTTGGAACTCCCCAGGT+TGG | - | chr1_4:22291756-22291775 | Msa0156310:CDS | 55.0% | |
| TTCCCTGTCACCTGTGCCAA+TGG | - | chr1_4:22291930-22291949 | Msa0156310:intron | 55.0% | |
| CACCATTGGCACAGGTGACA+GGG | + | chr1_4:22291935-22291954 | None:intergenic | 55.0% | |
| TCACCATTGGCACAGGTGAC+AGG | + | chr1_4:22291936-22291955 | None:intergenic | 55.0% | |
| ! | CACCCTCATGCCTAAGTTGG+CGG | - | chr1_4:22292143-22292162 | Msa0156310:intron | 55.0% |
| ! | GCACTCCACCAAGGAGTATG+AGG | + | chr1_4:22292313-22292332 | None:intergenic | 55.0% |
| GGCTCACTCTTGCCTCTCTT+AGG | - | chr1_4:22292698-22292717 | Msa0156310:intron | 55.0% | |
| !! | GTTCTTGTCACTGGTGCCGC+AGG | - | chr1_4:22288376-22288395 | Msa0156310:three_prime_UTR | 60.0% |
| GCATGCTGCTGCCAACTGCA+AGG | - | chr1_4:22289742-22289761 | Msa0156310:intron | 60.0% | |
| CTCCTGCATATGCAGGGTCC+AGG | - | chr1_4:22289915-22289934 | Msa0156310:intron | 60.0% | |
| GACAGCCGAAGAGCTGACTG+AGG | - | chr1_4:22292665-22292684 | Msa0156310:intron | 60.0% | |
| ! | GACGGGCTTCTCCCCAGCTG+GGG | + | chr1_4:22291261-22291280 | None:intergenic | 70.0% |
| ! | GGACGGGCTTCTCCCCAGCT+GGG | + | chr1_4:22291262-22291281 | None:intergenic | 70.0% |
| ! | CGGACGGGCTTCTCCCCAGC+TGG | + | chr1_4:22291263-22291282 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 22288235 | 22293155 | 22288235 | ID=Msa0156310;Name=Msa0156310 |
| chr1_4 | mRNA | 22288235 | 22293155 | 22288235 | ID=Msa0156310-mRNA-1;Parent=Msa0156310;Name=Msa0156310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=120|1|1|1|1|1|7|436|332 |
| chr1_4 | exon | 22288235 | 22288765 | 22288235 | ID=Msa0156310-mRNA-1:exon:7995;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22289418 | 22289529 | 22289418 | ID=Msa0156310-mRNA-1:exon:7994;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22289617 | 22289752 | 22289617 | ID=Msa0156310-mRNA-1:exon:7993;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22290084 | 22290361 | 22290084 | ID=Msa0156310-mRNA-1:exon:7992;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22291627 | 22291802 | 22291627 | ID=Msa0156310-mRNA-1:exon:7991;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22291939 | 22292097 | 22291939 | ID=Msa0156310-mRNA-1:exon:7990;Parent=Msa0156310-mRNA-1 |
| chr1_4 | exon | 22292993 | 22293155 | 22292993 | ID=Msa0156310-mRNA-1:exon:7989;Parent=Msa0156310-mRNA-1 |
| chr1_4 | five_prime_UTR | 22293036 | 22293155 | 22293036 | ID=Msa0156310-mRNA-1:five_prime_utr;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22292993 | 22293035 | 22292993 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22291939 | 22292097 | 22291939 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22291627 | 22291802 | 22291627 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22290084 | 22290361 | 22290084 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22289617 | 22289752 | 22289617 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22289418 | 22289529 | 22289418 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | CDS | 22288671 | 22288765 | 22288671 | ID=Msa0156310-mRNA-1:cds;Parent=Msa0156310-mRNA-1 |
| chr1_4 | three_prime_UTR | 22288235 | 22288670 | 22288235 | ID=Msa0156310-mRNA-1:three_prime_utr;Parent=Msa0156310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
