Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016000 | sp|Q8L7R5|CSPLG_ARATH | 62.602 | 123 | 46 | 0 | 1 | 123 | 1 | 123 | 1.03e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016000 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016000 | Msa1404100 | 0.954283 | 4.192000e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016000 | MtrunA17_Chr1g0167831 | 97.561 | 123 | 3 | 0 | 1 | 123 | 1 | 123 | 6.73e-72 | 214 |
| Msa0016000 | MtrunA17_Chr1g0186551 | 68.293 | 123 | 39 | 0 | 1 | 123 | 1 | 123 | 8.18e-60 | 183 |
| Msa0016000 | MtrunA17_Chr1g0186591 | 62.676 | 142 | 53 | 0 | 1 | 142 | 1 | 142 | 1.63e-59 | 182 |
| Msa0016000 | MtrunA17_Chr4g0009521 | 55.652 | 115 | 51 | 0 | 1 | 115 | 2 | 116 | 3.51e-38 | 128 |
| Msa0016000 | MtrunA17_Chr4g0028981 | 48.276 | 116 | 60 | 0 | 1 | 116 | 35 | 150 | 3.00e-32 | 114 |
| Msa0016000 | MtrunA17_Chr4g0034251 | 35.433 | 127 | 81 | 1 | 1 | 126 | 15 | 141 | 1.32e-15 | 70.9 |
| Msa0016000 | MtrunA17_Chr8g0373951 | 33.621 | 116 | 76 | 1 | 1 | 115 | 1 | 116 | 3.73e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016000 | AT3G23200.1 | 62.602 | 123 | 46 | 0 | 1 | 123 | 1 | 123 | 1.05e-51 | 163 |
| Msa0016000 | AT3G53850.1 | 56.897 | 116 | 50 | 0 | 1 | 116 | 1 | 116 | 1.47e-39 | 132 |
| Msa0016000 | AT3G53850.2 | 56.897 | 116 | 50 | 0 | 1 | 116 | 1 | 116 | 1.47e-39 | 132 |
| Msa0016000 | AT3G23200.2 | 68.354 | 79 | 25 | 0 | 45 | 123 | 18 | 96 | 4.51e-33 | 115 |
| Msa0016000 | AT5G02060.1 | 54.310 | 116 | 53 | 0 | 1 | 116 | 1 | 116 | 8.43e-33 | 115 |
| Msa0016000 | AT2G28370.1 | 47.826 | 115 | 60 | 0 | 1 | 115 | 29 | 143 | 1.16e-26 | 100 |
| Msa0016000 | AT3G53850.3 | 64.865 | 74 | 26 | 0 | 43 | 116 | 30 | 103 | 8.08e-26 | 97.1 |
| Msa0016000 | AT2G37200.1 | 46.218 | 119 | 63 | 1 | 1 | 119 | 31 | 148 | 4.40e-23 | 90.9 |
| Msa0016000 | AT2G37200.2 | 47.414 | 116 | 60 | 1 | 1 | 116 | 60 | 174 | 8.49e-23 | 90.9 |
| Msa0016000 | AT4G37235.1 | 34.259 | 108 | 68 | 2 | 9 | 114 | 9 | 115 | 9.30e-13 | 63.2 |
| Msa0016000 | AT1G49405.1 | 31.818 | 88 | 60 | 0 | 1 | 88 | 1 | 88 | 3.85e-11 | 58.9 |
Find 56 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTGTTCTTCTCTTTAT+TGG | 0.044576 | 1_1:-26564713 | Msa0016000:five_prime_UTR |
| CTGTTCTTGGTTTGATTCTT+AGG | 0.099077 | 1_1:-26564507 | Msa0016000:CDS |
| GATATGGGACATTGCCATTT+TGG | 0.170837 | 1_1:-26562238 | Msa0016000:CDS |
| GGCACACCTGGTACTGTTCT+TGG | 0.204359 | 1_1:-26564520 | Msa0016000:CDS |
| CAATTTAAAGCTGAATTTAA+TGG | 0.212564 | 1_1:-26564611 | Msa0016000:five_prime_UTR |
| GCCTCTTTGTTGTTGGTGAT+TGG | 0.275327 | 1_1:-26562692 | Msa0016000:CDS |
| CAATGGCTTTACAAATCATT+TGG | 0.304130 | 1_1:-26562788 | Msa0016000:CDS |
| TGACGTGTAATAAAAGAAAC+TGG | 0.307235 | 1_1:+26564432 | None:intergenic |
| AGATCCGGACCCGATAATTT+TGG | 0.314235 | 1_1:+26562105 | None:intergenic |
| TTTGACACTCCTCTCCAAAA+TGG | 0.331427 | 1_1:+26562224 | None:intergenic |
| TTCTGAAGATTGCTTTGATT+TGG | 0.347165 | 1_1:-26564568 | Msa0016000:five_prime_UTR |
| TTATCTGCCACTGAAATTGC+AGG | 0.349374 | 1_1:-26560378 | Msa0016000:CDS |
| GCTGCAGCTTCTGCCTCGGC+TGG | 0.369586 | 1_1:-26562283 | Msa0016000:CDS |
| GATTGCTTTGATTTGGTAAA+GGG | 0.375545 | 1_1:-26564561 | Msa0016000:five_prime_UTR |
| CCTCTTTGTTGTTGGTGATT+GGG | 0.376698 | 1_1:-26562691 | Msa0016000:intron |
| CAGTTTCTTGATAGCCTCAA+TGG | 0.407459 | 1_1:-26562805 | Msa0016000:CDS |
| TTGATTAGCCTCTTTGTTGT+TGG | 0.412424 | 1_1:-26562699 | Msa0016000:CDS |
| TTCGTTGGATGCTTATGCTT+TGG | 0.430874 | 1_1:-26562751 | Msa0016000:CDS |
| TCTAGCAGCGCCTTGGCCGT+TGG | 0.431941 | 1_1:-26562062 | Msa0016000:CDS |
| CATATTTAAGACTGGGAAGA+AGG | 0.435734 | 1_1:-26560450 | Msa0016000:intron |
| GGGTAGCAGACCAAAATTAT+CGG | 0.447641 | 1_1:-26562115 | Msa0016000:CDS |
| ACAAAGAGGCTAATCAATAC+AGG | 0.449483 | 1_1:+26562705 | None:intergenic |
| ACGGCCAAGGCGCTGCTAGA+GGG | 0.477638 | 1_1:+26562065 | None:intergenic |
| AATGGCAATGTCCCATATCA+TGG | 0.478377 | 1_1:+26562242 | None:intergenic |
| TAGAAGTGGTAGAGAAGATC+CGG | 0.493180 | 1_1:+26562090 | None:intergenic |
| CGGCCAAGGCGCTGCTAGAG+GGG | 0.494925 | 1_1:+26562066 | None:intergenic |
| GGGAAGATGAAGAATTTCTC+TGG | 0.498066 | 1_1:-26564541 | Msa0016000:exon |
| AAGAATTTCTCTGGCACACC+TGG | 0.503903 | 1_1:-26564532 | Msa0016000:CDS |
| CAGAAACTGAGTGGAAGATA+AGG | 0.508016 | 1_1:+26564634 | None:intergenic |
| TATCCCCTCTAGCAGCGCCT+TGG | 0.509163 | 1_1:-26562069 | Msa0016000:CDS |
| AACGGCCAAGGCGCTGCTAG+AGG | 0.509627 | 1_1:+26562064 | None:intergenic |
| AGTGGAAGATAAGGAAGATA+AGG | 0.512252 | 1_1:+26564643 | None:intergenic |
| AGATTGCTTTGATTTGGTAA+AGG | 0.512396 | 1_1:-26564562 | Msa0016000:five_prime_UTR |
| CGTTTGAGCTGAAACTCAAA+GGG | 0.517030 | 1_1:+26564743 | None:intergenic |
| TGAAATTGCAGGAGATTGAC+TGG | 0.519286 | 1_1:-26560367 | Msa0016000:CDS |
| CAGACCAAAATTATCGGGTC+CGG | 0.520665 | 1_1:-26562109 | Msa0016000:CDS |
| AATGATTTGTAAAGCCATTG+AGG | 0.528069 | 1_1:+26562791 | None:intergenic |
| AAAGAGAAGAACAGAGTGAA+AGG | 0.528585 | 1_1:+26564718 | None:intergenic |
| TCTAGCTGCAGCTTCTGCCT+CGG | 0.535675 | 1_1:-26562287 | Msa0016000:CDS |
| GTATATCAATCCAACGGCCA+AGG | 0.542650 | 1_1:+26562052 | None:intergenic |
| GGTAGCAGACCAAAATTATC+GGG | 0.543192 | 1_1:-26562114 | Msa0016000:CDS |
| ACGTTTGAGCTGAAACTCAA+AGG | 0.545189 | 1_1:+26564742 | None:intergenic |
| CCCAATCACCAACAACAAAG+AGG | 0.590501 | 1_1:+26562691 | None:intergenic |
| GGCCGTTGGATTGATATACC+AGG | 0.601932 | 1_1:-26562048 | Msa0016000:intron |
| CAAAGAGGCTAATCAATACA+GGG | 0.608265 | 1_1:+26562706 | None:intergenic |
| TTTAAATTGCAGAAACTGAG+TGG | 0.616129 | 1_1:+26564625 | None:intergenic |
| ATCAAACCAAGAACAGTACC+AGG | 0.617758 | 1_1:+26564514 | None:intergenic |
| AAGATAAGGAAGATAAGGCA+AGG | 0.621442 | 1_1:+26564648 | None:intergenic |
| GACGTGTAATAAAAGAAACT+GGG | 0.646839 | 1_1:+26564433 | None:intergenic |
| TCAATCTCCTGCAATTTCAG+TGG | 0.649983 | 1_1:+26560371 | None:intergenic |
| ATAAAAGAAACTGGGTGTGG+TGG | 0.650249 | 1_1:+26564441 | None:intergenic |
| CACCTGGTATATCAATCCAA+CGG | 0.651871 | 1_1:+26562046 | None:intergenic |
| CAAAACTGTAAGTCCAGCCG+AGG | 0.662942 | 1_1:+26562270 | None:intergenic |
| GCTGCTAGAGGGGATAGAAG+TGG | 0.665003 | 1_1:+26562076 | None:intergenic |
| AAGGAAATTGAGTCTCAGAG+AGG | 0.706980 | 1_1:+26564667 | None:intergenic |
| GTAATAAAAGAAACTGGGTG+TGG | 0.714784 | 1_1:+26564438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTCAGTCATTTATTTT+AGG | - | chr1_1:26560775-26560794 | Msa0016000:intron | 15.0% |
| !! | TATATTTATAAACTCTTATC+AGG | + | chr1_1:26561052-26561071 | None:intergenic | 15.0% |
| !! | AATCAATATTAAAATCAGAA+TGG | - | chr1_1:26562091-26562110 | Msa0016000:CDS | 15.0% |
| !! | ATCAATATTAAAATCAGAAT+GGG | - | chr1_1:26562092-26562111 | Msa0016000:CDS | 15.0% |
| !! | AAAAATAAGAGAAAATAGTA+TGG | - | chr1_1:26563719-26563738 | Msa0016000:intron | 15.0% |
| !!! | ATGACTTTTGTTATTAATTA+TGG | + | chr1_1:26563875-26563894 | None:intergenic | 15.0% |
| !! | AAAGTATGATTGATTATAAA+TGG | + | chr1_1:26563942-26563961 | None:intergenic | 15.0% |
| !!! | TGAAATTTAATAATTTTCGT+AGG | + | chr1_1:26564078-26564097 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTGTTGTTAATT+TGG | - | chr1_1:26564195-26564214 | Msa0016000:intron | 15.0% |
| !!! | TAATTTGGTTTTATTTAGAT+TGG | - | chr1_1:26564210-26564229 | Msa0016000:intron | 15.0% |
| !!! | AATTTGGTTTTATTTAGATT+GGG | - | chr1_1:26564211-26564230 | Msa0016000:intron | 15.0% |
| !!! | CAATTTAAAGCTGAATTTAA+TGG | - | chr1_1:26560504-26560523 | Msa0016000:intron | 20.0% |
| !! | TTGAATCAATAACAAACAAT+TGG | + | chr1_1:26561008-26561027 | None:intergenic | 20.0% |
| !! | AAATCACACAATGTTATATT+GGG | + | chr1_1:26561235-26561254 | None:intergenic | 20.0% |
| !! | AAAATCACACAATGTTATAT+TGG | + | chr1_1:26561236-26561255 | None:intergenic | 20.0% |
| !! | ATGATATAGCATCATAAATT+TGG | + | chr1_1:26561403-26561422 | None:intergenic | 20.0% |
| !! | TAAAGTAATTAAAATCAGAC+CGG | + | chr1_1:26561978-26561997 | None:intergenic | 20.0% |
| !! | CTTTAAATCAAGATAAAGAA+GGG | - | chr1_1:26562051-26562070 | Msa0016000:CDS | 20.0% |
| !!! | CTTTAGAATAACAATTTTCT+TGG | - | chr1_1:26562126-26562145 | Msa0016000:intron | 20.0% |
| !!! | AAGTTATAAGTTGTTTTCAT+AGG | + | chr1_1:26562676-26562695 | None:intergenic | 20.0% |
| !!! | TATTAACCAAAGCATTATTA+GGG | + | chr1_1:26562974-26562993 | None:intergenic | 20.0% |
| !! | TAATATCATTACAACATACA+AGG | + | chr1_1:26563319-26563338 | None:intergenic | 20.0% |
| !!! | GGTTTTTCAATATTATAGAT+AGG | - | chr1_1:26563366-26563385 | Msa0016000:intron | 20.0% |
| !!! | CTTTTGTTATTAATTATGGT+AGG | + | chr1_1:26563871-26563890 | None:intergenic | 20.0% |
| !! | TGATTGATTATAAATGGAAT+TGG | + | chr1_1:26563936-26563955 | None:intergenic | 20.0% |
| !! | AACTAATACTCAAATACAAA+TGG | + | chr1_1:26564014-26564033 | None:intergenic | 20.0% |
| !! | TTATCCCAAAAAAAAATCAT+GGG | + | chr1_1:26564499-26564518 | None:intergenic | 20.0% |
| !! | TCTTTTATTACACGTCATTT+TGG | - | chr1_1:26560689-26560708 | Msa0016000:intron | 25.0% |
| ! | TGGTAAATAAGATATGAAGT+GGG | + | chr1_1:26560726-26560745 | None:intergenic | 25.0% |
| ! | TTGGTAAATAAGATATGAAG+TGG | + | chr1_1:26560727-26560746 | None:intergenic | 25.0% |
| ! | GAGATCGTTTAATATTGAAT+TGG | - | chr1_1:26560866-26560885 | Msa0016000:intron | 25.0% |
| !!! | GTTTGTTATTGATTCAAGTT+AGG | - | chr1_1:26561011-26561030 | Msa0016000:intron | 25.0% |
| !! | CCCATGTAAGATTTTATATT+GGG | + | chr1_1:26561101-26561120 | None:intergenic | 25.0% |
| ! | CCCAATATAAAATCTTACAT+GGG | - | chr1_1:26561098-26561117 | Msa0016000:intron | 25.0% |
| !! | TCCCATGTAAGATTTTATAT+TGG | + | chr1_1:26561102-26561121 | None:intergenic | 25.0% |
| ! | GTGTCTTAATTCACATTAAT+TGG | - | chr1_1:26561285-26561304 | Msa0016000:intron | 25.0% |
| ! | TTAATTCACATTAATTGGTG+CGG | - | chr1_1:26561290-26561309 | Msa0016000:intron | 25.0% |
| ! | TATAGCATCATAAATTTGGT+AGG | + | chr1_1:26561399-26561418 | None:intergenic | 25.0% |
| !!! | AATATACAGCTTTCAAGTTT+AGG | - | chr1_1:26561605-26561624 | Msa0016000:intron | 25.0% |
| ! | AAGGTGATTAATGATTCATT+TGG | + | chr1_1:26561808-26561827 | None:intergenic | 25.0% |
| ! | AAATGAATCATTAATCACCT+TGG | - | chr1_1:26561807-26561826 | Msa0016000:intron | 25.0% |
| ! | TATCTGTGATTATTCTGTTT+AGG | + | chr1_1:26562017-26562036 | None:intergenic | 25.0% |
| ! | AGAATAATCACAGATAAGTA+TGG | - | chr1_1:26562021-26562040 | Msa0016000:intron | 25.0% |
| ! | CCTTCTTTATCTTGATTTAA+AGG | + | chr1_1:26562053-26562072 | None:intergenic | 25.0% |
| ! | CCTTTAAATCAAGATAAAGA+AGG | - | chr1_1:26562050-26562069 | Msa0016000:CDS | 25.0% |
| ! | TTGCTTCAAACAAATTAGTT+AGG | + | chr1_1:26562478-26562497 | None:intergenic | 25.0% |
| !!! | TAACAAATGCTTGTTTTGAT+TGG | - | chr1_1:26562529-26562548 | Msa0016000:intron | 25.0% |
| ! | AAACAGTTTCACAAATTCTA+AGG | + | chr1_1:26562577-26562596 | None:intergenic | 25.0% |
| !! | TAGAATTTGTGAAACTGTTT+TGG | - | chr1_1:26562577-26562596 | Msa0016000:intron | 25.0% |
| !! | CTATTAACCAAAGCATTATT+AGG | + | chr1_1:26562975-26562994 | None:intergenic | 25.0% |
| !! | TATACATTCTGAAAGAATGT+TGG | + | chr1_1:26563176-26563195 | None:intergenic | 25.0% |
| !! | TTCTAGTTGAATTGAAGAAA+TGG | + | chr1_1:26563242-26563261 | None:intergenic | 25.0% |
| !!! | ATTTTCTCTTATTTTTGCAG+AGG | + | chr1_1:26563715-26563734 | None:intergenic | 25.0% |
| ! | ACTAGAGATAAAAAGCAATT+AGG | - | chr1_1:26563778-26563797 | Msa0016000:intron | 25.0% |
| !! | TTTTACAAGAGGGAATTTTA+AGG | + | chr1_1:26563906-26563925 | None:intergenic | 25.0% |
| ! | TTCCACTAAAAATTTAGTGA+TGG | - | chr1_1:26564051-26564070 | Msa0016000:intron | 25.0% |
| !! | CTCTAATTTTTCTGTCTTAA+AGG | + | chr1_1:26564410-26564429 | None:intergenic | 25.0% |
| !!! | ATACCCCATGATTTTTTTTT+GGG | - | chr1_1:26564492-26564511 | Msa0016000:CDS | 25.0% |
| ! | TATCCCAAAAAAAAATCATG+GGG | + | chr1_1:26564498-26564517 | None:intergenic | 25.0% |
| ! | CTTATCCCAAAAAAAAATCA+TGG | + | chr1_1:26564500-26564519 | None:intergenic | 25.0% |
| !!! | CATGATTTTTTTTTGGGATA+AGG | - | chr1_1:26564498-26564517 | Msa0016000:CDS | 25.0% |
| TTTAAATTGCAGAAACTGAG+TGG | + | chr1_1:26560493-26560512 | None:intergenic | 30.0% | |
| ! | TTCTGAAGATTGCTTTGATT+TGG | - | chr1_1:26560547-26560566 | Msa0016000:intron | 30.0% |
| !! | AGATTGCTTTGATTTGGTAA+AGG | - | chr1_1:26560553-26560572 | Msa0016000:intron | 30.0% |
| !! | GATTGCTTTGATTTGGTAAA+GGG | - | chr1_1:26560554-26560573 | Msa0016000:intron | 30.0% |
| GACGTGTAATAAAAGAAACT+GGG | + | chr1_1:26560685-26560704 | None:intergenic | 30.0% | |
| TGACGTGTAATAAAAGAAAC+TGG | + | chr1_1:26560686-26560705 | None:intergenic | 30.0% | |
| !! | CTTAGTCATTGATTCAAGAT+CGG | + | chr1_1:26560915-26560934 | None:intergenic | 30.0% |
| ACACATGATATGATGAATGA+TGG | + | chr1_1:26560982-26561001 | None:intergenic | 30.0% | |
| TAACTCATCATTACGAAATC+GGG | + | chr1_1:26561076-26561095 | None:intergenic | 30.0% | |
| CTAACTCATCATTACGAAAT+CGG | + | chr1_1:26561077-26561096 | None:intergenic | 30.0% | |
| GCCCAATATAAAATCTTACA+TGG | - | chr1_1:26561097-26561116 | Msa0016000:intron | 30.0% | |
| ! | ATTGTGTGATTTTGTTGCAA+TGG | - | chr1_1:26561243-26561262 | Msa0016000:intron | 30.0% |
| GATTACACATCAAATGACAA+CGG | - | chr1_1:26561359-26561378 | Msa0016000:intron | 30.0% | |
| CAGTAAAAGTGAGTAAGAAA+AGG | + | chr1_1:26561435-26561454 | None:intergenic | 30.0% | |
| ACTTAAGTGATGAATGCAAT+TGG | - | chr1_1:26561669-26561688 | Msa0016000:intron | 30.0% | |
| CTTAAGTGATGAATGCAATT+GGG | - | chr1_1:26561670-26561689 | Msa0016000:intron | 30.0% | |
| GATTAATGATTCATTTGGAC+CGG | + | chr1_1:26561803-26561822 | None:intergenic | 30.0% | |
| !! | GTTTTGATGCTTCTTTTTAG+TGG | + | chr1_1:26561860-26561879 | None:intergenic | 30.0% |
| !! | CTAAAAAGAAGCATCAAAAC+CGG | - | chr1_1:26561860-26561879 | Msa0016000:intron | 30.0% |
| !!! | ATAAAGAAGGGTGTTTTCAA+AGG | - | chr1_1:26562063-26562082 | Msa0016000:CDS | 30.0% |
| ! | GCATGCTTTTCAATGATTTT+TGG | - | chr1_1:26562195-26562214 | Msa0016000:intron | 30.0% |
| AATACATCAATAACCATGCT+TGG | - | chr1_1:26562241-26562260 | Msa0016000:CDS | 30.0% | |
| TGCAAAAACAATGGAACAAT+CGG | + | chr1_1:26562292-26562311 | None:intergenic | 30.0% | |
| TCAAGAAACTGCAAAAACAA+TGG | + | chr1_1:26562301-26562320 | None:intergenic | 30.0% | |
| ! | AATGATTTGTAAAGCCATTG+AGG | + | chr1_1:26562327-26562346 | None:intergenic | 30.0% |
| ! | CAATGGCTTTACAAATCATT+TGG | - | chr1_1:26562327-26562346 | Msa0016000:intron | 30.0% |
| TTATGCTTTGGTGAAAAAGA+AGG | - | chr1_1:26562376-26562395 | Msa0016000:intron | 30.0% | |
| !! | AGGTAATTTTGAAGAGCTTA+TGG | + | chr1_1:26562656-26562675 | None:intergenic | 30.0% |
| ATCCAAACAAGACTTAAGTT+TGG | - | chr1_1:26562775-26562794 | Msa0016000:CDS | 30.0% | |
| !! | AACCAAACTTAAGTCTTGTT+TGG | + | chr1_1:26562780-26562799 | None:intergenic | 30.0% |
| !! | AGTTTTGTACTTCCATGATA+TGG | - | chr1_1:26562861-26562880 | Msa0016000:intron | 30.0% |
| ! | GTTTTGTACTTCCATGATAT+GGG | - | chr1_1:26562862-26562881 | Msa0016000:intron | 30.0% |
| TATCATCCCTAATAATGCTT+TGG | - | chr1_1:26562965-26562984 | Msa0016000:intron | 30.0% | |
| TATAACACCATATCGAACAT+TGG | + | chr1_1:26563117-26563136 | None:intergenic | 30.0% | |
| ! | ATTCTGAAAGAATGTTGGAT+GGG | + | chr1_1:26563171-26563190 | None:intergenic | 30.0% |
| CCAATTACATGCAAAAGATA+AGG | + | chr1_1:26563348-26563367 | None:intergenic | 30.0% | |
| ! | CCTTATCTTTTGCATGTAAT+TGG | - | chr1_1:26563345-26563364 | Msa0016000:intron | 30.0% |
| !! | TTGGTATTGGTATGTATTCT+TGG | - | chr1_1:26563558-26563577 | Msa0016000:intron | 30.0% |
| TTAAAATCAAAATAGTCGCC+AGG | + | chr1_1:26563621-26563640 | None:intergenic | 30.0% | |
| ! | TGGACACATATTTTACAAGA+GGG | + | chr1_1:26563916-26563935 | None:intergenic | 30.0% |
| ! | TTGGACACATATTTTACAAG+AGG | + | chr1_1:26563917-26563936 | None:intergenic | 30.0% |
| ! | AATCAATCATACTTTTAGCC+AGG | - | chr1_1:26563947-26563966 | Msa0016000:intron | 30.0% |
| ATACTCAAATACAAATGGTG+TGG | + | chr1_1:26564009-26564028 | None:intergenic | 30.0% | |
| !! | GACCATCACTAAATTTTTAG+TGG | + | chr1_1:26564056-26564075 | None:intergenic | 30.0% |
| TGATATTGTTAGTTGTGAAG+AGG | - | chr1_1:26564242-26564261 | Msa0016000:intron | 30.0% | |
| GATATTGTTAGTTGTGAAGA+GGG | - | chr1_1:26564243-26564262 | Msa0016000:intron | 30.0% | |
| ! | TCATGTTAAGAATTTGCTTG+AGG | + | chr1_1:26564311-26564330 | None:intergenic | 30.0% |
| TTACAGATAAAGTACGTCAT+GGG | - | chr1_1:26564459-26564478 | Msa0016000:CDS | 30.0% | |
| !!! | CATACCCCATGATTTTTTTT+TGG | - | chr1_1:26564491-26564510 | Msa0016000:CDS | 30.0% |
| ! | TCATTGGTTAATTACTCTCT+AGG | - | chr1_1:26564604-26564623 | Msa0016000:five_prime_UTR | 30.0% |
| ! | CATTGGTTAATTACTCTCTA+GGG | - | chr1_1:26564605-26564624 | Msa0016000:five_prime_UTR | 30.0% |
| ! | TGAAACGGAAATTTCAGTTT+TGG | + | chr1_1:26564647-26564666 | None:intergenic | 30.0% |
| ! | TTCCGTTTCATATTTAAGAC+TGG | - | chr1_1:26564657-26564676 | Msa0016000:five_prime_UTR | 30.0% |
| ! | TCCGTTTCATATTTAAGACT+GGG | - | chr1_1:26564658-26564677 | Msa0016000:five_prime_UTR | 30.0% |
| TCCCAGTCTTAAATATGAAA+CGG | + | chr1_1:26564662-26564681 | None:intergenic | 30.0% | |
| AAAGAGAAGAACAGAGTGAA+AGG | + | chr1_1:26560400-26560419 | None:intergenic | 35.0% | |
| CACTCTGTTCTTCTCTTTAT+TGG | - | chr1_1:26560402-26560421 | Msa0016000:CDS | 35.0% | |
| AAGATAAGGAAGATAAGGCA+AGG | + | chr1_1:26560470-26560489 | None:intergenic | 35.0% | |
| AGTGGAAGATAAGGAAGATA+AGG | + | chr1_1:26560475-26560494 | None:intergenic | 35.0% | |
| ! | CTGTTCTTGGTTTGATTCTT+AGG | - | chr1_1:26560608-26560627 | Msa0016000:intron | 35.0% |
| !! | TCACAGTTCATTTTTGCTAC+TGG | - | chr1_1:26560634-26560653 | Msa0016000:intron | 35.0% |
| GTAATAAAAGAAACTGGGTG+TGG | + | chr1_1:26560680-26560699 | None:intergenic | 35.0% | |
| !! | GATATGATGAATGATGGATC+TGG | + | chr1_1:26560976-26560995 | None:intergenic | 35.0% |
| ! | TTGATTCAAGTTAGGTCCAT+CGG | - | chr1_1:26561019-26561038 | Msa0016000:intron | 35.0% |
| CGATTTCGTAATGATGAGTT+AGG | - | chr1_1:26561075-26561094 | Msa0016000:intron | 35.0% | |
| !! | GTGTATATAAATGGTGGGTA+TGG | + | chr1_1:26561144-26561163 | None:intergenic | 35.0% |
| ACTAGGTGCGTGTATATAAA+TGG | + | chr1_1:26561153-26561172 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr1_1:26561211-26561230 | None:intergenic | 35.0% | |
| GATACTTCATTGTGTTGCAA+TGG | - | chr1_1:26561337-26561356 | Msa0016000:intron | 35.0% | |
| GTTATCAGAATTCAGAAGTG+TGG | + | chr1_1:26561548-26561567 | None:intergenic | 35.0% | |
| TAATCACCTTGGCAGAAAAT+CGG | - | chr1_1:26561818-26561837 | Msa0016000:intron | 35.0% | |
| ! | TTTTCTTAACCGAGACAAAC+CGG | + | chr1_1:26561903-26561922 | None:intergenic | 35.0% |
| ! | GCATGCTTTTAACAACTTCA+AGG | + | chr1_1:26562181-26562200 | None:intergenic | 35.0% |
| CAAAGAGGCTAATCAATACA+GGG | + | chr1_1:26562412-26562431 | None:intergenic | 35.0% | |
| ACAAAGAGGCTAATCAATAC+AGG | + | chr1_1:26562413-26562432 | None:intergenic | 35.0% | |
| !! | TTGATTAGCCTCTTTGTTGT+TGG | - | chr1_1:26562416-26562435 | Msa0016000:intron | 35.0% |
| !! | TTCACAAATTCTAAGGCAAG+TGG | + | chr1_1:26562570-26562589 | None:intergenic | 35.0% |
| !! | ATATACCAGGTGAGAGTATT+TGG | - | chr1_1:26563080-26563099 | Msa0016000:intron | 35.0% |
| !! | TATACCAGGTGAGAGTATTT+GGG | - | chr1_1:26563081-26563100 | Msa0016000:intron | 35.0% |
| !!! | TGAGAGTATTTGGGTTTTTC+CGG | - | chr1_1:26563090-26563109 | Msa0016000:intron | 35.0% |
| ! | CATTCTGAAAGAATGTTGGA+TGG | + | chr1_1:26563172-26563191 | None:intergenic | 35.0% |
| !! | CTTTTAGAAATTTTGCCGCA+CGG | - | chr1_1:26563478-26563497 | Msa0016000:intron | 35.0% |
| !! | TTCGTTTCATGCTTGGTTTT+TGG | - | chr1_1:26563539-26563558 | Msa0016000:intron | 35.0% |
| !!! | TCATGCTTGGTTTTTGGTAT+TGG | - | chr1_1:26563545-26563564 | Msa0016000:intron | 35.0% |
| ATTGGTATGTATTCTTGGAC+AGG | - | chr1_1:26563563-26563582 | Msa0016000:intron | 35.0% | |
| TTGGTATGTATTCTTGGACA+GGG | - | chr1_1:26563564-26563583 | Msa0016000:intron | 35.0% | |
| TTATGGTAGGACCATAAAGA+TGG | + | chr1_1:26563858-26563877 | None:intergenic | 35.0% | |
| AATACCCTTAACGTTGATCT+GGG | + | chr1_1:26563973-26563992 | None:intergenic | 35.0% | |
| !! | AGATCAACGTTAAGGGTATT+GGG | - | chr1_1:26563973-26563992 | Msa0016000:intron | 35.0% |
| ! | GTTAAGAATTTGCTTGAGGT+TGG | + | chr1_1:26564307-26564326 | None:intergenic | 35.0% |
| ! | GTGTGAGATCTGATTCATTT+TGG | + | chr1_1:26564341-26564360 | None:intergenic | 35.0% |
| TTAAAGGAATGCAAGGAGAA+AGG | + | chr1_1:26564394-26564413 | None:intergenic | 35.0% | |
| TTCTGTCTTAAAGGAATGCA+AGG | + | chr1_1:26564401-26564420 | None:intergenic | 35.0% | |
| GTTACAGATAAAGTACGTCA+TGG | - | chr1_1:26564458-26564477 | Msa0016000:CDS | 35.0% | |
| AAAGTACGTCATGGGTAATT+TGG | - | chr1_1:26564467-26564486 | Msa0016000:CDS | 35.0% | |
| CGAAATAACAAATGGGCATT+TGG | + | chr1_1:26564575-26564594 | None:intergenic | 35.0% | |
| ! | CATATTTAAGACTGGGAAGA+AGG | - | chr1_1:26564665-26564684 | Msa0016000:five_prime_UTR | 35.0% |
| !! | CTCTGTGCAACTTTGATTTT+CGG | - | chr1_1:26564700-26564719 | Msa0016000:five_prime_UTR | 35.0% |
| CGTTTGAGCTGAAACTCAAA+GGG | + | chr1_1:26560375-26560394 | None:intergenic | 40.0% | |
| ACGTTTGAGCTGAAACTCAA+AGG | + | chr1_1:26560376-26560395 | None:intergenic | 40.0% | |
| AAGGAAATTGAGTCTCAGAG+AGG | + | chr1_1:26560451-26560470 | None:intergenic | 40.0% | |
| CAGAAACTGAGTGGAAGATA+AGG | + | chr1_1:26560484-26560503 | None:intergenic | 40.0% | |
| GGGAAGATGAAGAATTTCTC+TGG | - | chr1_1:26560574-26560593 | Msa0016000:intron | 40.0% | |
| ATCAAACCAAGAACAGTACC+AGG | + | chr1_1:26560604-26560623 | None:intergenic | 40.0% | |
| ATAAAAGAAACTGGGTGTGG+TGG | + | chr1_1:26560677-26560696 | None:intergenic | 40.0% | |
| TAAGATTGATTACAGCTGCG+TGG | - | chr1_1:26560931-26560950 | Msa0016000:intron | 40.0% | |
| AAGTTAGGTCCATCGGATAT+AGG | - | chr1_1:26561026-26561045 | Msa0016000:intron | 40.0% | |
| GGTGCGTGTATATAAATGGT+GGG | + | chr1_1:26561149-26561168 | None:intergenic | 40.0% | |
| AGGTGCGTGTATATAAATGG+TGG | + | chr1_1:26561150-26561169 | None:intergenic | 40.0% | |
| !! | ACGCACCTAGTCTTATAAAG+AGG | - | chr1_1:26561162-26561181 | Msa0016000:intron | 40.0% |
| CCTCTCCTCTTTATAAGACT+AGG | + | chr1_1:26561170-26561189 | None:intergenic | 40.0% | |
| !! | CCTAGTCTTATAAAGAGGAG+AGG | - | chr1_1:26561167-26561186 | Msa0016000:intron | 40.0% |
| CCTTACAAAACCGGATTGTA+AGG | + | chr1_1:26561202-26561221 | None:intergenic | 40.0% | |
| !! | CCTTACAATCCGGTTTTGTA+AGG | - | chr1_1:26561199-26561218 | Msa0016000:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr1_1:26561209-26561228 | Msa0016000:intron | 40.0% |
| ! | CAGAATTCAGAAGTGTGGAA+GGG | + | chr1_1:26561543-26561562 | None:intergenic | 40.0% |
| ! | TCAGAATTCAGAAGTGTGGA+AGG | + | chr1_1:26561544-26561563 | None:intergenic | 40.0% |
| CAGTCAGGTTCAGATTACAA+TGG | + | chr1_1:26561755-26561774 | None:intergenic | 40.0% | |
| TAATCTGAACCTGACTGATC+CGG | - | chr1_1:26561758-26561777 | Msa0016000:intron | 40.0% | |
| ! | AGAAAATCGGACTAGAAACC+AGG | - | chr1_1:26561831-26561850 | Msa0016000:intron | 40.0% |
| !! | GCTTCTTTTTAGTGGTTTCC+TGG | + | chr1_1:26561852-26561871 | None:intergenic | 40.0% |
| !!! | AGAAGGGTGTTTTCAAAGGA+TGG | - | chr1_1:26562067-26562086 | Msa0016000:CDS | 40.0% |
| CAATAACCATGCTTGGATGT+TGG | - | chr1_1:26562248-26562267 | Msa0016000:CDS | 40.0% | |
| ! | CAGTTTCTTGATAGCCTCAA+TGG | - | chr1_1:26562310-26562329 | Msa0016000:intron | 40.0% |
| TTCGTTGGATGCTTATGCTT+TGG | - | chr1_1:26562364-26562383 | Msa0016000:intron | 40.0% | |
| !! | CCTCTTTGTTGTTGGTGATT+GGG | - | chr1_1:26562424-26562443 | Msa0016000:intron | 40.0% |
| !! | TAAGTTTGGTTCTTGACCAC+AGG | - | chr1_1:26562789-26562808 | Msa0016000:CDS | 40.0% |
| ! | GATATTGTTGCTGTTACCTG+TGG | + | chr1_1:26562808-26562827 | None:intergenic | 40.0% |
| AATGGCAATGTCCCATATCA+TGG | + | chr1_1:26562876-26562895 | None:intergenic | 40.0% | |
| !! | GATATGGGACATTGCCATTT+TGG | - | chr1_1:26562877-26562896 | Msa0016000:intron | 40.0% |
| TTTGACACTCCTCTCCAAAA+TGG | + | chr1_1:26562894-26562913 | None:intergenic | 40.0% | |
| AGGCAAAAGCAACAGAAATC+TGG | + | chr1_1:26562921-26562940 | None:intergenic | 40.0% | |
| AATTGAGATCCAGCTCATGA+AGG | + | chr1_1:26562941-26562960 | None:intergenic | 40.0% | |
| ATGCTTTGGTTAATAGCAGC+AGG | - | chr1_1:26562979-26562998 | Msa0016000:intron | 40.0% | |
| TGCTTTGGTTAATAGCAGCA+GGG | - | chr1_1:26562980-26562999 | Msa0016000:intron | 40.0% | |
| GGGTAGCAGACCAAAATTAT+CGG | - | chr1_1:26563000-26563019 | Msa0016000:intron | 40.0% | |
| GGTAGCAGACCAAAATTATC+GGG | - | chr1_1:26563001-26563020 | Msa0016000:intron | 40.0% | |
| TAGAAGTGGTAGAGAAGATC+CGG | + | chr1_1:26563028-26563047 | None:intergenic | 40.0% | |
| CACCTGGTATATCAATCCAA+CGG | + | chr1_1:26563072-26563091 | None:intergenic | 40.0% | |
| AAAACCCAAATACTCTCACC+TGG | + | chr1_1:26563088-26563107 | None:intergenic | 40.0% | |
| ! | GTTTTCCTCCCATTGACAAT+CGG | + | chr1_1:26563277-26563296 | None:intergenic | 40.0% |
| TTGTTACATCGTTGCACTGT+GGG | + | chr1_1:26563415-26563434 | None:intergenic | 40.0% | |
| TTTGTTACATCGTTGCACTG+TGG | + | chr1_1:26563416-26563435 | None:intergenic | 40.0% | |
| AACTAACTACATAAGCCGTG+CGG | + | chr1_1:26563496-26563515 | None:intergenic | 40.0% | |
| TCTGTTTGACCCTCATACAT+CGG | - | chr1_1:26563515-26563534 | Msa0016000:intron | 40.0% | |
| GAAACGAAACCGATGTATGA+GGG | + | chr1_1:26563527-26563546 | None:intergenic | 40.0% | |
| TGAAACGAAACCGATGTATG+AGG | + | chr1_1:26563528-26563547 | None:intergenic | 40.0% | |
| TGGTATGTATTCTTGGACAG+GGG | - | chr1_1:26563565-26563584 | Msa0016000:intron | 40.0% | |
| TAGAGACTTAATGCAGCTTC+AGG | + | chr1_1:26563755-26563774 | None:intergenic | 40.0% | |
| TCGCTACTTGACAAGAAAAG+AGG | - | chr1_1:26563801-26563820 | Msa0016000:intron | 40.0% | |
| CGCTACTTGACAAGAAAAGA+GGG | - | chr1_1:26563802-26563821 | Msa0016000:intron | 40.0% | |
| CAATACCCTTAACGTTGATC+TGG | + | chr1_1:26563974-26563993 | None:intergenic | 40.0% | |
| ! | CAGATCAACGTTAAGGGTAT+TGG | - | chr1_1:26563972-26563991 | Msa0016000:intron | 40.0% |
| !! | GATCAACGTTAAGGGTATTG+GGG | - | chr1_1:26563974-26563993 | Msa0016000:intron | 40.0% |
| CTCAAATACAAATGGTGTGG+AGG | + | chr1_1:26564006-26564025 | None:intergenic | 40.0% | |
| ATGAATCAGATCTCACACAC+TGG | - | chr1_1:26564343-26564362 | Msa0016000:intron | 40.0% | |
| ! | AACAAGCACTGCAAATCACT+TGG | + | chr1_1:26564441-26564460 | None:intergenic | 40.0% |
| GGGATAAGGAGAATTGAACT+CGG | - | chr1_1:26564512-26564531 | Msa0016000:CDS | 40.0% | |
| GGATAAGGAGAATTGAACTC+GGG | - | chr1_1:26564513-26564532 | Msa0016000:CDS | 40.0% | |
| AGTCGTATGATTCTCGCTTA+GGG | + | chr1_1:26564549-26564568 | None:intergenic | 40.0% | |
| TAGTCGTATGATTCTCGCTT+AGG | + | chr1_1:26564550-26564569 | None:intergenic | 40.0% | |
| GCGACGACGAAATAACAAAT+GGG | + | chr1_1:26564582-26564601 | None:intergenic | 40.0% | |
| TGCGACGACGAAATAACAAA+TGG | + | chr1_1:26564583-26564602 | None:intergenic | 40.0% | |
| TATTTCGTCGTCGCATTCAT+TGG | - | chr1_1:26564588-26564607 | Msa0016000:five_prime_UTR | 40.0% | |
| !! | ACGGAAATTTCAGTTTTGGC+TGG | + | chr1_1:26564643-26564662 | None:intergenic | 40.0% |
| TTATCTGCCACTGAAATTGC+AGG | - | chr1_1:26564737-26564756 | Msa0016000:five_prime_UTR | 40.0% | |
| TCAATCTCCTGCAATTTCAG+TGG | + | chr1_1:26564747-26564766 | None:intergenic | 40.0% | |
| TGAAATTGCAGGAGATTGAC+TGG | - | chr1_1:26564748-26564767 | Msa0016000:five_prime_UTR | 40.0% | |
| AAGAATTTCTCTGGCACACC+TGG | - | chr1_1:26560583-26560602 | Msa0016000:intron | 45.0% | |
| CTTATCAGGCCTATATCCGA+TGG | + | chr1_1:26561038-26561057 | None:intergenic | 45.0% | |
| TGGGATCAGAGCTTATCGAT+CGG | - | chr1_1:26561117-26561136 | Msa0016000:intron | 45.0% | |
| ! | TCTAGTCCGATTTTCTGCCA+AGG | + | chr1_1:26561827-26561846 | None:intergenic | 45.0% |
| GCATCAAAACCGGACAAAAC+CGG | - | chr1_1:26561870-26561889 | Msa0016000:intron | 45.0% | |
| CTGACCTTTAACCCTTGAAC+CGG | - | chr1_1:26561932-26561951 | Msa0016000:intron | 45.0% | |
| ! | GTCTACACAGGTTTAAGGTC+CGG | - | chr1_1:26561956-26561975 | Msa0016000:intron | 45.0% |
| CTACATCCAACATCCAAGCA+TGG | + | chr1_1:26562257-26562276 | None:intergenic | 45.0% | |
| !! | GAGTTTTGTGCTTGCTTCGT+TGG | - | chr1_1:26562349-26562368 | Msa0016000:intron | 45.0% |
| !! | GCCTCTTTGTTGTTGGTGAT+TGG | - | chr1_1:26562423-26562442 | Msa0016000:intron | 45.0% |
| CCCAATCACCAACAACAAAG+AGG | + | chr1_1:26562427-26562446 | None:intergenic | 45.0% | |
| !! | TTGCTTTTGCCTTCATGAGC+TGG | - | chr1_1:26562929-26562948 | Msa0016000:intron | 45.0% |
| CAGACCAAAATTATCGGGTC+CGG | - | chr1_1:26563006-26563025 | Msa0016000:intron | 45.0% | |
| ! | AGATCCGGACCCGATAATTT+TGG | + | chr1_1:26563013-26563032 | None:intergenic | 45.0% |
| GTATATCAATCCAACGGCCA+AGG | + | chr1_1:26563066-26563085 | None:intergenic | 45.0% | |
| TTCCGGTCCAATGTTCGATA+TGG | - | chr1_1:26563107-26563126 | Msa0016000:intron | 45.0% | |
| CACCATATCGAACATTGGAC+CGG | + | chr1_1:26563112-26563131 | None:intergenic | 45.0% | |
| AGATAGCAGCCGATTGTCAA+TGG | - | chr1_1:26563265-26563284 | Msa0016000:intron | 45.0% | |
| GATAGCAGCCGATTGTCAAT+GGG | - | chr1_1:26563266-26563285 | Msa0016000:intron | 45.0% | |
| AGATAGCATTCTACCGCATG+CGG | - | chr1_1:26563450-26563469 | Msa0016000:intron | 45.0% | |
| ! | TCTAAAAGTGCAACCGCATG+CGG | + | chr1_1:26563466-26563485 | None:intergenic | 45.0% |
| !! | CATCGGTTTCGTTTCATGCT+TGG | - | chr1_1:26563532-26563551 | Msa0016000:intron | 45.0% |
| GTCCTGGATCTAATGTACCT+TGG | - | chr1_1:26563595-26563614 | Msa0016000:intron | 45.0% | |
| GTGAGTGACAAAACAAGGGT+GGG | + | chr1_1:26563833-26563852 | None:intergenic | 45.0% | |
| AGTGAGTGACAAAACAAGGG+TGG | + | chr1_1:26563834-26563853 | None:intergenic | 45.0% | |
| GGCAGTGAGTGACAAAACAA+GGG | + | chr1_1:26563837-26563856 | None:intergenic | 45.0% | |
| TGGCAGTGAGTGACAAAACA+AGG | + | chr1_1:26563838-26563857 | None:intergenic | 45.0% | |
| GTCACTCACTGCCATCTTTA+TGG | - | chr1_1:26563844-26563863 | Msa0016000:intron | 45.0% | |
| !! | AAAAATAAATAATAATACTT+TGG | + | chr1_1:26560746-26560765 | None:intergenic | 5.0% |
| GGGATCAGAGCTTATCGATC+GGG | - | chr1_1:26561118-26561137 | Msa0016000:intron | 50.0% | |
| GCACTGCTCACCTTACAATC+CGG | - | chr1_1:26561189-26561208 | Msa0016000:intron | 50.0% | |
| TCAAAACCGGACAAAACCGG+CGG | - | chr1_1:26561873-26561892 | Msa0016000:intron | 50.0% | |
| CCTTAAACCTGTGTAGACGC+CGG | + | chr1_1:26561954-26561973 | None:intergenic | 50.0% | |
| CAAAACTGTAAGTCCAGCCG+AGG | + | chr1_1:26562848-26562867 | None:intergenic | 50.0% | |
| !!! | GGGACATTGCCATTTTGGAG+AGG | - | chr1_1:26562882-26562901 | Msa0016000:intron | 50.0% |
| GGCCGTTGGATTGATATACC+AGG | - | chr1_1:26563067-26563086 | Msa0016000:intron | 50.0% | |
| ACATCGTTGCACTGTGGGAA+AGG | + | chr1_1:26563410-26563429 | None:intergenic | 50.0% | |
| GGCCAAGGTACATTAGATCC+AGG | + | chr1_1:26563600-26563619 | None:intergenic | 50.0% | |
| GGATCTAATGTACCTTGGCC+TGG | - | chr1_1:26563600-26563619 | Msa0016000:intron | 50.0% | |
| TCAAAATAGTCGCCAGGCCA+AGG | + | chr1_1:26563615-26563634 | None:intergenic | 50.0% | |
| CAGGCCCAGATCAACGTTAA+GGG | - | chr1_1:26563966-26563985 | Msa0016000:intron | 50.0% | |
| !! | CAACGTTAAGGGTATTGGGG+CGG | - | chr1_1:26563977-26563996 | Msa0016000:intron | 50.0% |
| GGCACACCTGGTACTGTTCT+TGG | - | chr1_1:26560595-26560614 | Msa0016000:intron | 55.0% | |
| !! | ACGTGTGTCTGGTTCTCAGC+CGG | + | chr1_1:26561780-26561799 | None:intergenic | 55.0% |
| CTGAGAACCAGACACACGTC+CGG | - | chr1_1:26561781-26561800 | Msa0016000:intron | 55.0% | |
| ATTTGGACCGGACGTGTGTC+TGG | + | chr1_1:26561791-26561810 | None:intergenic | 55.0% | |
| !! | GACGCCGGTTCAAGGGTTAA+AGG | + | chr1_1:26561939-26561958 | None:intergenic | 55.0% |
| !! | CTGTGTAGACGCCGGTTCAA+GGG | + | chr1_1:26561946-26561965 | None:intergenic | 55.0% |
| CCGGCGTCTACACAGGTTTA+AGG | - | chr1_1:26561951-26561970 | Msa0016000:intron | 55.0% | |
| TCTAGCTGCAGCTTCTGCCT+CGG | - | chr1_1:26562828-26562847 | Msa0016000:intron | 55.0% | |
| GCTGCTAGAGGGGATAGAAG+TGG | + | chr1_1:26563042-26563061 | None:intergenic | 55.0% | |
| AGCAGCCGATTGTCAATGGG+AGG | - | chr1_1:26563269-26563288 | Msa0016000:intron | 55.0% | |
| CCTTAACGTTGATCTGGGCC+TGG | + | chr1_1:26563968-26563987 | None:intergenic | 55.0% | |
| CCAGGCCCAGATCAACGTTA+AGG | - | chr1_1:26563965-26563984 | Msa0016000:intron | 55.0% | |
| ATTCTCGCTTAGGGTGCGAG+AGG | + | chr1_1:26564540-26564559 | None:intergenic | 55.0% | |
| GGTTCTCAGCCGGATCAGTC+AGG | + | chr1_1:26561770-26561789 | None:intergenic | 60.0% | |
| !! | CCTGTGTAGACGCCGGTTCA+AGG | + | chr1_1:26561947-26561966 | None:intergenic | 60.0% |
| CCTTGAACCGGCGTCTACAC+AGG | - | chr1_1:26561944-26561963 | Msa0016000:intron | 60.0% | |
| TATCCCCTCTAGCAGCGCCT+TGG | - | chr1_1:26563046-26563065 | Msa0016000:intron | 60.0% | |
| GGACAGGGGTTCTTGAGTCC+TGG | - | chr1_1:26563579-26563598 | Msa0016000:intron | 60.0% | |
| !!! | GGCAAGCCGCCGGTTTTGTC+CGG | + | chr1_1:26561882-26561901 | None:intergenic | 65.0% |
| GGACAAAACCGGCGGCTTGC+CGG | - | chr1_1:26561881-26561900 | Msa0016000:intron | 65.0% | |
| GAGACAAACCGGCAAGCCGC+CGG | + | chr1_1:26561892-26561911 | None:intergenic | 65.0% | |
| !! | GGCGGCTTGCCGGTTTGTCT+CGG | - | chr1_1:26561891-26561910 | Msa0016000:intron | 65.0% |
| !! | ACGGCCAAGGCGCTGCTAGA+GGG | + | chr1_1:26563053-26563072 | None:intergenic | 65.0% |
| !! | AACGGCCAAGGCGCTGCTAG+AGG | + | chr1_1:26563054-26563073 | None:intergenic | 65.0% |
| TCTAGCAGCGCCTTGGCCGT+TGG | - | chr1_1:26563053-26563072 | Msa0016000:intron | 65.0% | |
| GCTGCAGCTTCTGCCTCGGC+TGG | - | chr1_1:26562832-26562851 | Msa0016000:intron | 70.0% | |
| !! | CGGCCAAGGCGCTGCTAGAG+GGG | + | chr1_1:26563052-26563071 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26560361 | 26564776 | 26560361 | ID=Msa0016000;Name=Msa0016000 |
| chr1_1 | mRNA | 26560361 | 26564776 | 26560361 | ID=Msa0016000-mRNA-1;Parent=Msa0016000;Name=Msa0016000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=219|0.5|0.4|0.8|1|1|5|0|186 |
| chr1_1 | exon | 26560361 | 26560462 | 26560361 | ID=Msa0016000-mRNA-1:exon:8929;Parent=Msa0016000-mRNA-1 |
| chr1_1 | exon | 26562049 | 26562139 | 26562049 | ID=Msa0016000-mRNA-1:exon:8928;Parent=Msa0016000-mRNA-1 |
| chr1_1 | exon | 26562223 | 26562326 | 26562223 | ID=Msa0016000-mRNA-1:exon:8927;Parent=Msa0016000-mRNA-1 |
| chr1_1 | exon | 26562692 | 26562824 | 26562692 | ID=Msa0016000-mRNA-1:exon:8926;Parent=Msa0016000-mRNA-1 |
| chr1_1 | exon | 26564427 | 26564776 | 26564427 | ID=Msa0016000-mRNA-1:exon:8925;Parent=Msa0016000-mRNA-1 |
| chr1_1 | five_prime_UTR | 26564558 | 26564776 | 26564558 | ID=Msa0016000-mRNA-1:five_prime_utr;Parent=Msa0016000-mRNA-1 |
| chr1_1 | CDS | 26564427 | 26564557 | 26564427 | ID=Msa0016000-mRNA-1:cds;Parent=Msa0016000-mRNA-1 |
| chr1_1 | CDS | 26562692 | 26562824 | 26562692 | ID=Msa0016000-mRNA-1:cds;Parent=Msa0016000-mRNA-1 |
| chr1_1 | CDS | 26562223 | 26562326 | 26562223 | ID=Msa0016000-mRNA-1:cds;Parent=Msa0016000-mRNA-1 |
| chr1_1 | CDS | 26562049 | 26562139 | 26562049 | ID=Msa0016000-mRNA-1:cds;Parent=Msa0016000-mRNA-1 |
| chr1_1 | CDS | 26560361 | 26560462 | 26560361 | ID=Msa0016000-mRNA-1:cds;Parent=Msa0016000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
