Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404100 | XP_003590058.1 | 97.561 | 123 | 3 | 0 | 58 | 180 | 1 | 123 | 1.62e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404100 | sp|Q8L7R5|CSPLG_ARATH | 62.602 | 123 | 46 | 0 | 58 | 180 | 1 | 123 | 2.42e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404100 | G7I5E9 | 97.561 | 123 | 3 | 0 | 58 | 180 | 1 | 123 | 7.75e-68 | 215 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1404100 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016000 | Msa1404100 | 0.954283 | 4.192000e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404100 | MtrunA17_Chr1g0167831 | 97.561 | 123 | 3 | 0 | 58 | 180 | 1 | 123 | 1.49e-71 | 215 |
| Msa1404100 | MtrunA17_Chr1g0186551 | 68.293 | 123 | 39 | 0 | 58 | 180 | 1 | 123 | 2.21e-59 | 184 |
| Msa1404100 | MtrunA17_Chr1g0186591 | 62.676 | 142 | 53 | 0 | 58 | 199 | 1 | 142 | 4.95e-59 | 184 |
| Msa1404100 | MtrunA17_Chr4g0009521 | 55.652 | 115 | 51 | 0 | 58 | 172 | 2 | 116 | 1.76e-37 | 129 |
| Msa1404100 | MtrunA17_Chr4g0028981 | 40.909 | 154 | 87 | 1 | 20 | 173 | 1 | 150 | 3.96e-32 | 116 |
| Msa1404100 | MtrunA17_Chr2g0279231 | 60.714 | 56 | 22 | 0 | 1 | 56 | 849 | 904 | 2.92e-15 | 74.7 |
| Msa1404100 | MtrunA17_Chr4g0034251 | 35.433 | 127 | 81 | 1 | 58 | 183 | 15 | 141 | 6.76e-15 | 70.1 |
| Msa1404100 | MtrunA17_Chr5g0447551 | 53.846 | 52 | 24 | 0 | 2 | 53 | 436 | 487 | 3.38e-12 | 65.9 |
| Msa1404100 | MtrunA17_Chr5g0410631 | 48.077 | 52 | 27 | 0 | 2 | 53 | 7 | 58 | 1.79e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404100 | AT3G23200.1 | 62.602 | 123 | 46 | 0 | 58 | 180 | 1 | 123 | 2.46e-51 | 164 |
| Msa1404100 | AT3G53850.1 | 56.897 | 116 | 50 | 0 | 58 | 173 | 1 | 116 | 1.13e-38 | 132 |
| Msa1404100 | AT3G53850.2 | 56.897 | 116 | 50 | 0 | 58 | 173 | 1 | 116 | 1.13e-38 | 132 |
| Msa1404100 | AT3G23200.2 | 68.354 | 79 | 25 | 0 | 102 | 180 | 18 | 96 | 1.26e-32 | 115 |
| Msa1404100 | AT5G02060.1 | 54.310 | 116 | 53 | 0 | 58 | 173 | 1 | 116 | 5.75e-32 | 115 |
| Msa1404100 | AT2G28370.1 | 41.830 | 153 | 79 | 3 | 20 | 172 | 1 | 143 | 4.12e-27 | 103 |
| Msa1404100 | AT3G53850.3 | 64.865 | 74 | 26 | 0 | 100 | 173 | 30 | 103 | 3.73e-25 | 97.1 |
| Msa1404100 | AT2G37200.1 | 47.009 | 117 | 61 | 1 | 57 | 173 | 30 | 145 | 9.81e-23 | 91.7 |
| Msa1404100 | AT2G37200.2 | 47.009 | 117 | 61 | 1 | 57 | 173 | 59 | 174 | 1.94e-22 | 91.7 |
| Msa1404100 | AT4G37235.1 | 34.653 | 101 | 64 | 1 | 66 | 164 | 9 | 109 | 2.72e-12 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTTGGTTTGATTCTT+AGG | 0.099077 | tig0023026:-49188 | Msa1404100:CDS |
| GATATGGGACATTGCCATTT+TGG | 0.170837 | tig0023026:-46919 | Msa1404100:CDS |
| GGCACACCTGGTACTGTTCT+TGG | 0.204359 | tig0023026:-49201 | Msa1404100:CDS |
| GCCTCTTTGTTGTTGGTGAT+TGG | 0.275327 | tig0023026:-47373 | Msa1404100:CDS |
| CAATGGCTTTACAAATCATT+TGG | 0.304130 | tig0023026:-47469 | Msa1404100:CDS |
| TGACGTGTAATAAAAGAAAC+TGG | 0.307235 | tig0023026:+49113 | None:intergenic |
| AGATCCGGACCCGATAATTT+TGG | 0.314235 | tig0023026:+46786 | None:intergenic |
| TTTGACACTCCTCTCCAAAA+TGG | 0.331427 | tig0023026:+46905 | None:intergenic |
| TTATCTGCCACTGAAATTGC+AGG | 0.349374 | tig0023026:-45053 | Msa1404100:CDS |
| GCTGCAGCTTCTGCCTCGGC+TGG | 0.369586 | tig0023026:-46964 | Msa1404100:CDS |
| CCTCTTTGTTGTTGGTGATT+GGG | 0.376698 | tig0023026:-47372 | Msa1404100:intron |
| CAGTTTCTTGATAGCCTCAA+TGG | 0.407459 | tig0023026:-47486 | Msa1404100:CDS |
| TTGATTAGCCTCTTTGTTGT+TGG | 0.412424 | tig0023026:-47380 | Msa1404100:CDS |
| ACCATCTGTAACTTGCATCT+TGG | 0.426363 | tig0023026:+51147 | None:intergenic |
| TTCGTTGGATGCTTATGCTT+TGG | 0.430874 | tig0023026:-47432 | Msa1404100:CDS |
| TCTAGCAGCGCCTTGGCCGT+TGG | 0.431941 | tig0023026:-46743 | Msa1404100:CDS |
| CATATTTAAGACTGGGAAGA+AGG | 0.435734 | tig0023026:-45125 | Msa1404100:intron |
| GGGTAGCAGACCAAAATTAT+CGG | 0.447641 | tig0023026:-46796 | Msa1404100:CDS |
| ACAAAGAGGCTAATCAATAC+AGG | 0.449483 | tig0023026:+47386 | None:intergenic |
| TTCAAATTTAGCTCGTGGTA+AGG | 0.453054 | tig0023026:+51180 | None:intergenic |
| AAGATCCGCAATTTGATCCT+TGG | 0.456720 | tig0023026:+51213 | None:intergenic |
| ACGGCCAAGGCGCTGCTAGA+GGG | 0.477638 | tig0023026:+46746 | None:intergenic |
| AATGGCAATGTCCCATATCA+TGG | 0.478377 | tig0023026:+46923 | None:intergenic |
| CAAAATGAAACACATCTCCT+TGG | 0.480625 | tig0023026:-51296 | None:intergenic |
| TAGAAGTGGTAGAGAAGATC+CGG | 0.493180 | tig0023026:+46771 | None:intergenic |
| CGGCCAAGGCGCTGCTAGAG+GGG | 0.494925 | tig0023026:+46747 | None:intergenic |
| GGGAAGATGAAGAATTTCTC+TGG | 0.498066 | tig0023026:-49222 | Msa1404100:CDS |
| AAGAATTTCTCTGGCACACC+TGG | 0.503903 | tig0023026:-49213 | Msa1404100:CDS |
| TCAAATTTAGCTCGTGGTAA+GGG | 0.505519 | tig0023026:+51181 | None:intergenic |
| TATCCCCTCTAGCAGCGCCT+TGG | 0.509163 | tig0023026:-46750 | Msa1404100:CDS |
| AACGGCCAAGGCGCTGCTAG+AGG | 0.509627 | tig0023026:+46745 | None:intergenic |
| TGAAATTGCAGGAGATTGAC+TGG | 0.519286 | tig0023026:-45042 | Msa1404100:CDS |
| CAGACCAAAATTATCGGGTC+CGG | 0.520665 | tig0023026:-46790 | Msa1404100:CDS |
| AATGATTTGTAAAGCCATTG+AGG | 0.528069 | tig0023026:+47472 | None:intergenic |
| TCTAGCTGCAGCTTCTGCCT+CGG | 0.535675 | tig0023026:-46968 | Msa1404100:CDS |
| GTATATCAATCCAACGGCCA+AGG | 0.542650 | tig0023026:+46733 | None:intergenic |
| GGTAGCAGACCAAAATTATC+GGG | 0.543192 | tig0023026:-46795 | Msa1404100:CDS |
| AGTTCTTCAAATTTAGCTCG+TGG | 0.573796 | tig0023026:+51175 | None:intergenic |
| CCCAATCACCAACAACAAAG+AGG | 0.590501 | tig0023026:+47372 | None:intergenic |
| GAGCTAAATTTGAAGAACTA+CGG | 0.595320 | tig0023026:-51171 | Msa1404100:CDS |
| ACGAACAAAGTGATAATCCA+AGG | 0.601672 | tig0023026:+51279 | None:intergenic |
| GGCCGTTGGATTGATATACC+AGG | 0.601932 | tig0023026:-46729 | Msa1404100:intron |
| CAAAGAGGCTAATCAATACA+GGG | 0.608265 | tig0023026:+47387 | None:intergenic |
| ATCAAACCAAGAACAGTACC+AGG | 0.617758 | tig0023026:+49195 | None:intergenic |
| CTCTACCAAGGATCAAATTG+CGG | 0.618385 | tig0023026:-51218 | Msa1404100:CDS |
| GTTCGTGAACAAGTACGTGA+TGG | 0.623609 | tig0023026:-51262 | Msa1404100:CDS |
| TCCAAGATGCAAGTTACAGA+TGG | 0.631755 | tig0023026:-51148 | Msa1404100:intron |
| GACGTGTAATAAAAGAAACT+GGG | 0.646839 | tig0023026:+49114 | None:intergenic |
| TCAATCTCCTGCAATTTCAG+TGG | 0.649983 | tig0023026:+45046 | None:intergenic |
| ATAAAAGAAACTGGGTGTGG+TGG | 0.650249 | tig0023026:+49122 | None:intergenic |
| CACCTGGTATATCAATCCAA+CGG | 0.651871 | tig0023026:+46727 | None:intergenic |
| CAAAACTGTAAGTCCAGCCG+AGG | 0.662942 | tig0023026:+46951 | None:intergenic |
| GCTGCTAGAGGGGATAGAAG+TGG | 0.665003 | tig0023026:+46757 | None:intergenic |
| AGTCTCTCATGTCTCTACCA+AGG | 0.674583 | tig0023026:-51230 | Msa1404100:CDS |
| GTAATAAAAGAAACTGGGTG+TGG | 0.714784 | tig0023026:+49119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAACTAATAAAATTA+AGG | + | tig0023026:45859-45878 | None:intergenic | 10.0% |
| !!! | TTAATTTTATTAGTTACAAT+TGG | - | tig0023026:45858-45877 | Msa1404100:intron | 10.0% |
| !!! | TATTGTTTTTTTCAAAATTA+AGG | - | tig0023026:46202-46221 | Msa1404100:intron | 10.0% |
| !!! | ATTGTTTTTTTCAAAATTAA+GGG | - | tig0023026:46203-46222 | Msa1404100:intron | 10.0% |
| !!! | ACATTTTGTTTAAATTAAAT+AGG | - | tig0023026:46249-46268 | Msa1404100:intron | 10.0% |
| !!! | CATTTTGTTTAAATTAAATA+GGG | - | tig0023026:46250-46269 | Msa1404100:intron | 10.0% |
| !!! | ACATTTTGTTTAAATTAAAT+AGG | - | tig0023026:46249-46268 | Msa1404100:intron | 10.0% |
| !!! | CATTTTGTTTAAATTAAATA+GGG | - | tig0023026:46250-46269 | Msa1404100:intron | 10.0% |
| !!! | ACATTTTGTTTAAATTAAAT+AGG | - | tig0023026:46249-46268 | Msa1404100:intron | 10.0% |
| !!! | CATTTTGTTTAAATTAAATA+GGG | - | tig0023026:46250-46269 | Msa1404100:intron | 10.0% |
| !!! | TTTGTTTTAAAAATTAAACG+CGG | - | tig0023026:45981-46000 | Msa1404100:intron | 15.0% |
| !! | AACAACAATTAAAATAGATA+TGG | - | tig0023026:46153-46172 | Msa1404100:intron | 15.0% |
| !! | ACAACAATTAAAATAGATAT+GGG | - | tig0023026:46154-46173 | Msa1404100:intron | 15.0% |
| !! | AAACAAAATGTTAATTGTTA+TGG | + | tig0023026:46240-46259 | None:intergenic | 15.0% |
| !! | TAAAATTAAACAGAGAAATT+AGG | - | tig0023026:46282-46301 | Msa1404100:intron | 15.0% |
| !! | AAAATTAAACAGAGAAATTA+GGG | - | tig0023026:46283-46302 | Msa1404100:intron | 15.0% |
| !! | AAATAATAAGAGATAACAAT+AGG | - | tig0023026:46485-46504 | Msa1404100:intron | 15.0% |
| !!! | TAAGCAAAAAATAACTTTTT+TGG | - | tig0023026:46708-46727 | Msa1404100:intron | 15.0% |
| !!! | ATAATTCAGTCATTTATTTT+AGG | - | tig0023026:47307-47326 | Msa1404100:intron | 15.0% |
| !! | TATATTTATAAACTCTTATC+AGG | + | tig0023026:47584-47603 | None:intergenic | 15.0% |
| !! | AATCAATATTAAAATCAGAA+TGG | - | tig0023026:48623-48642 | Msa1404100:intron | 15.0% |
| !! | ATCAATATTAAAATCAGAAT+GGG | - | tig0023026:48624-48643 | Msa1404100:intron | 15.0% |
| !! | AAAAATAAGAGAAAATAGTA+TGG | - | tig0023026:50257-50276 | Msa1404100:intron | 15.0% |
| !!! | ATGACTTTTGTTATTAATTA+TGG | + | tig0023026:50413-50432 | None:intergenic | 15.0% |
| !! | AAAGTATGATTGATTATAAA+TGG | + | tig0023026:50480-50499 | None:intergenic | 15.0% |
| !!! | TGAAATTTAATAATTTTCGT+AGG | + | tig0023026:50616-50635 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTGTTGTTAATT+TGG | - | tig0023026:50733-50752 | Msa1404100:intron | 15.0% |
| !!! | TAATTTGGTTTTATTTAGAT+TGG | - | tig0023026:50748-50767 | Msa1404100:intron | 15.0% |
| !!! | AATTTGGTTTTATTTAGATT+GGG | - | tig0023026:50749-50768 | Msa1404100:intron | 15.0% |
| !!! | TTCTTTTCAATATAAGTGAA+AGG | + | tig0023026:45487-45506 | None:intergenic | 20.0% |
| !! | GAAATAAGAATGAAGAAATA+TGG | - | tig0023026:45524-45543 | Msa1404100:intron | 20.0% |
| !! | ATACATACATGCATATAAAT+AGG | - | tig0023026:45707-45726 | Msa1404100:intron | 20.0% |
| !!! | TCTTAAGAGAAAATTTTCAA+TGG | - | tig0023026:45882-45901 | Msa1404100:intron | 20.0% |
| !!! | CTTAAGAGAAAATTTTCAAT+GGG | - | tig0023026:45883-45902 | Msa1404100:intron | 20.0% |
| !! | TAAAATTAAGCAGAGAAATT+AGG | - | tig0023026:46424-46443 | Msa1404100:intron | 20.0% |
| !! | AAAATTAAGCAGAGAAATTA+GGG | - | tig0023026:46425-46444 | Msa1404100:intron | 20.0% |
| !! | AAACAAAATGTTAATTGTTG+TGG | + | tig0023026:46517-46536 | None:intergenic | 20.0% |
| !! | TAAAATTAAGCAGAGAAATT+AGG | - | tig0023026:46424-46443 | Msa1404100:intron | 20.0% |
| !! | AAAATTAAGCAGAGAAATTA+GGG | - | tig0023026:46425-46444 | Msa1404100:intron | 20.0% |
| !!! | TTTTTGCTTATAATAGTAAC+CGG | + | tig0023026:46636-46655 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTAAC+CGG | + | tig0023026:46636-46655 | None:intergenic | 20.0% |
| !!! | TGAAATTTTGTTTATAACAG+TGG | - | tig0023026:46801-46820 | Msa1404100:CDS | 20.0% |
| !!! | CAATTTAAAGCTGAATTTAA+TGG | - | tig0023026:47036-47055 | Msa1404100:intron | 20.0% |
| !! | TTGAATCAATAACAAACAAT+TGG | + | tig0023026:47540-47559 | None:intergenic | 20.0% |
| !! | AAATCACACAATGTTATATT+GGG | + | tig0023026:47767-47786 | None:intergenic | 20.0% |
| !! | AAAATCACACAATGTTATAT+TGG | + | tig0023026:47768-47787 | None:intergenic | 20.0% |
| !! | ATGATATAGCATCATAAATT+TGG | + | tig0023026:47935-47954 | None:intergenic | 20.0% |
| !! | TAAAGTAATTAAAATCAGAC+CGG | + | tig0023026:48510-48529 | None:intergenic | 20.0% |
| !! | CTTTAAATCAAGATAAAGAA+GGG | - | tig0023026:48583-48602 | Msa1404100:intron | 20.0% |
| !!! | CTTTAGAATAACAATTTTCT+TGG | - | tig0023026:48658-48677 | Msa1404100:intron | 20.0% |
| !!! | AAGTTATAAGTTGTTTTCAT+AGG | + | tig0023026:49208-49227 | None:intergenic | 20.0% |
| !!! | TATTAACCAAAGCATTATTA+GGG | + | tig0023026:49506-49525 | None:intergenic | 20.0% |
| !! | TAATATCATTACAACATACA+AGG | + | tig0023026:49851-49870 | None:intergenic | 20.0% |
| !!! | GGTTTTTCAATATTATAGAT+AGG | - | tig0023026:49898-49917 | Msa1404100:intron | 20.0% |
| !!! | CTTTTGTTATTAATTATGGT+AGG | + | tig0023026:50409-50428 | None:intergenic | 20.0% |
| !! | TGATTGATTATAAATGGAAT+TGG | + | tig0023026:50474-50493 | None:intergenic | 20.0% |
| !! | AACTAATACTCAAATACAAA+TGG | + | tig0023026:50552-50571 | None:intergenic | 20.0% |
| !! | TTATCCCAAAAAAAAATCAT+GGG | + | tig0023026:51037-51056 | None:intergenic | 20.0% |
| ! | GCAGCATTATTATGTAATTA+TGG | - | tig0023026:45337-45356 | Msa1404100:intron | 25.0% |
| ! | AGAATGAAGAAATATGGATA+AGG | - | tig0023026:45530-45549 | Msa1404100:intron | 25.0% |
| !!! | ATTAAGGAAGATTAGCTTTA+AGG | + | tig0023026:45843-45862 | None:intergenic | 25.0% |
| ! | ACACAAAATTTCGTACAAAA+CGG | - | tig0023026:45956-45975 | Msa1404100:intron | 25.0% |
| ! | AGAGAAATTAGGGTAAATAT+AGG | - | tig0023026:46435-46454 | Msa1404100:intron | 25.0% |
| ! | ATAGGACAAAATATTGCTTA+CGG | - | tig0023026:46453-46472 | Msa1404100:intron | 25.0% |
| !! | TCTTTTATTACACGTCATTT+TGG | - | tig0023026:47221-47240 | Msa1404100:intron | 25.0% |
| ! | TGGTAAATAAGATATGAAGT+GGG | + | tig0023026:47258-47277 | None:intergenic | 25.0% |
| ! | TTGGTAAATAAGATATGAAG+TGG | + | tig0023026:47259-47278 | None:intergenic | 25.0% |
| ! | GAGATCGTTTAATATTGAAT+TGG | - | tig0023026:47398-47417 | Msa1404100:CDS | 25.0% |
| !!! | GTTTGTTATTGATTCAAGTT+AGG | - | tig0023026:47543-47562 | Msa1404100:intron | 25.0% |
| !! | CCCATGTAAGATTTTATATT+GGG | + | tig0023026:47633-47652 | None:intergenic | 25.0% |
| ! | CCCAATATAAAATCTTACAT+GGG | - | tig0023026:47630-47649 | Msa1404100:intron | 25.0% |
| !! | TCCCATGTAAGATTTTATAT+TGG | + | tig0023026:47634-47653 | None:intergenic | 25.0% |
| ! | GTGTCTTAATTCACATTAAT+TGG | - | tig0023026:47817-47836 | Msa1404100:intron | 25.0% |
| ! | TTAATTCACATTAATTGGTG+CGG | - | tig0023026:47822-47841 | Msa1404100:intron | 25.0% |
| ! | TATAGCATCATAAATTTGGT+AGG | + | tig0023026:47931-47950 | None:intergenic | 25.0% |
| !!! | AATATACAGCTTTCAAGTTT+AGG | - | tig0023026:48137-48156 | Msa1404100:intron | 25.0% |
| ! | AAGGTGATTAATGATTCATT+TGG | + | tig0023026:48340-48359 | None:intergenic | 25.0% |
| ! | AAATGAATCATTAATCACCT+TGG | - | tig0023026:48339-48358 | Msa1404100:intron | 25.0% |
| ! | TATCTGTGATTATTCTGTTT+AGG | + | tig0023026:48549-48568 | None:intergenic | 25.0% |
| ! | AGAATAATCACAGATAAGTA+TGG | - | tig0023026:48553-48572 | Msa1404100:intron | 25.0% |
| ! | CCTTCTTTATCTTGATTTAA+AGG | + | tig0023026:48585-48604 | None:intergenic | 25.0% |
| ! | CCTTTAAATCAAGATAAAGA+AGG | - | tig0023026:48582-48601 | Msa1404100:intron | 25.0% |
| ! | TTGCTTCAAACAAATTAGTT+AGG | + | tig0023026:49010-49029 | None:intergenic | 25.0% |
| !!! | TAACAAATGCTTGTTTTGAT+TGG | - | tig0023026:49061-49080 | Msa1404100:intron | 25.0% |
| ! | AAACAGTTTCACAAATTCTA+AGG | + | tig0023026:49109-49128 | None:intergenic | 25.0% |
| !! | TAGAATTTGTGAAACTGTTT+TGG | - | tig0023026:49109-49128 | Msa1404100:CDS | 25.0% |
| !! | CTATTAACCAAAGCATTATT+AGG | + | tig0023026:49507-49526 | None:intergenic | 25.0% |
| !! | TATACATTCTGAAAGAATGT+TGG | + | tig0023026:49708-49727 | None:intergenic | 25.0% |
| !! | TTCTAGTTGAATTGAAGAAA+TGG | + | tig0023026:49774-49793 | None:intergenic | 25.0% |
| !!! | ATTTTCTCTTATTTTTGCAG+AGG | + | tig0023026:50253-50272 | None:intergenic | 25.0% |
| ! | ACTAGAGATAAAAAGCAATT+AGG | - | tig0023026:50316-50335 | Msa1404100:intron | 25.0% |
| !! | TTTTACAAGAGGGAATTTTA+AGG | + | tig0023026:50444-50463 | None:intergenic | 25.0% |
| ! | TTCCACTAAAAATTTAGTGA+TGG | - | tig0023026:50589-50608 | Msa1404100:intron | 25.0% |
| !! | CTCTAATTTTTCTGTCTTAA+AGG | + | tig0023026:50948-50967 | None:intergenic | 25.0% |
| !!! | ATACCCCATGATTTTTTTTT+GGG | - | tig0023026:51030-51049 | Msa1404100:intron | 25.0% |
| ! | TATCCCAAAAAAAAATCATG+GGG | + | tig0023026:51036-51055 | None:intergenic | 25.0% |
| ! | CTTATCCCAAAAAAAAATCA+TGG | + | tig0023026:51038-51057 | None:intergenic | 25.0% |
| !!! | CATGATTTTTTTTTGGGATA+AGG | - | tig0023026:51036-51055 | Msa1404100:intron | 25.0% |
| GAGCTAAATTTGAAGAACTA+CGG | - | tig0023026:45157-45176 | Msa1404100:intron | 30.0% | |
| !! | TACATAGTTGACTTCAGTTT+TGG | + | tig0023026:45274-45293 | None:intergenic | 30.0% |
| CAGTAGTCAACTATGTAATT+AGG | - | tig0023026:45315-45334 | Msa1404100:intron | 30.0% | |
| GAAAAGAAAAGAGAGAAAGA+AGG | - | tig0023026:45499-45518 | Msa1404100:intron | 30.0% | |
| ATATATAATGCAAGTGTGTG+TGG | - | tig0023026:45771-45790 | Msa1404100:intron | 30.0% | |
| ! | GCGACTCATGATAAATTTTT+CGG | + | tig0023026:46058-46077 | None:intergenic | 30.0% |
| CGATAAAAATTCATAGTCGA+AGG | - | tig0023026:46111-46130 | Msa1404100:intron | 30.0% | |
| AGAGAAATTAGGGTAAATCT+AGG | - | tig0023026:46293-46312 | Msa1404100:intron | 30.0% | |
| GAGAAATTAGGGTAAATCTA+GGG | - | tig0023026:46294-46313 | Msa1404100:intron | 30.0% | |
| AAGAGATAAGAGATAACAAC+AGG | - | tig0023026:46350-46369 | Msa1404100:intron | 30.0% | |
| TAGGACAAAATATTGCTTAC+GGG | - | tig0023026:46454-46473 | Msa1404100:intron | 30.0% | |
| AGAGAAATTAGGGTAAATCT+AGG | - | tig0023026:46293-46312 | Msa1404100:intron | 30.0% | |
| GAGAAATTAGGGTAAATCTA+GGG | - | tig0023026:46294-46313 | Msa1404100:intron | 30.0% | |
| CTAGGGTAAAAATTGTTTAC+TGG | - | tig0023026:46588-46607 | Msa1404100:intron | 30.0% | |
| !! | ATTTTGTTTATAACAGTGGC+CGG | - | tig0023026:46805-46824 | Msa1404100:intron | 30.0% |
| TTTAAATTGCAGAAACTGAG+TGG | + | tig0023026:47025-47044 | None:intergenic | 30.0% | |
| ! | TTCTGAAGATTGCTTTGATT+TGG | - | tig0023026:47079-47098 | Msa1404100:intron | 30.0% |
| !! | AGATTGCTTTGATTTGGTAA+AGG | - | tig0023026:47085-47104 | Msa1404100:intron | 30.0% |
| !! | GATTGCTTTGATTTGGTAAA+GGG | - | tig0023026:47086-47105 | Msa1404100:intron | 30.0% |
| GACGTGTAATAAAAGAAACT+GGG | + | tig0023026:47217-47236 | None:intergenic | 30.0% | |
| TGACGTGTAATAAAAGAAAC+TGG | + | tig0023026:47218-47237 | None:intergenic | 30.0% | |
| !! | CTTAGTCATTGATTCAAGAT+CGG | + | tig0023026:47447-47466 | None:intergenic | 30.0% |
| ACACATGATATGATGAATGA+TGG | + | tig0023026:47514-47533 | None:intergenic | 30.0% | |
| TAACTCATCATTACGAAATC+GGG | + | tig0023026:47608-47627 | None:intergenic | 30.0% | |
| CTAACTCATCATTACGAAAT+CGG | + | tig0023026:47609-47628 | None:intergenic | 30.0% | |
| GCCCAATATAAAATCTTACA+TGG | - | tig0023026:47629-47648 | Msa1404100:intron | 30.0% | |
| ! | ATTGTGTGATTTTGTTGCAA+TGG | - | tig0023026:47775-47794 | Msa1404100:intron | 30.0% |
| GATTACACATCAAATGACAA+CGG | - | tig0023026:47891-47910 | Msa1404100:intron | 30.0% | |
| CAGTAAAAGTGAGTAAGAAA+AGG | + | tig0023026:47967-47986 | None:intergenic | 30.0% | |
| ACTTAAGTGATGAATGCAAT+TGG | - | tig0023026:48201-48220 | Msa1404100:intron | 30.0% | |
| CTTAAGTGATGAATGCAATT+GGG | - | tig0023026:48202-48221 | Msa1404100:intron | 30.0% | |
| GATTAATGATTCATTTGGAC+CGG | + | tig0023026:48335-48354 | None:intergenic | 30.0% | |
| !! | GTTTTGATGCTTCTTTTTAG+TGG | + | tig0023026:48392-48411 | None:intergenic | 30.0% |
| !! | CTAAAAAGAAGCATCAAAAC+CGG | - | tig0023026:48392-48411 | Msa1404100:intron | 30.0% |
| !!! | ATAAAGAAGGGTGTTTTCAA+AGG | - | tig0023026:48595-48614 | Msa1404100:intron | 30.0% |
| ! | GCATGCTTTTCAATGATTTT+TGG | - | tig0023026:48727-48746 | Msa1404100:intron | 30.0% |
| AATACATCAATAACCATGCT+TGG | - | tig0023026:48773-48792 | Msa1404100:intron | 30.0% | |
| TGCAAAAACAATGGAACAAT+CGG | + | tig0023026:48824-48843 | None:intergenic | 30.0% | |
| TCAAGAAACTGCAAAAACAA+TGG | + | tig0023026:48833-48852 | None:intergenic | 30.0% | |
| ! | AATGATTTGTAAAGCCATTG+AGG | + | tig0023026:48859-48878 | None:intergenic | 30.0% |
| ! | CAATGGCTTTACAAATCATT+TGG | - | tig0023026:48859-48878 | Msa1404100:intron | 30.0% |
| TTATGCTTTGGTGAAAAAGA+AGG | - | tig0023026:48908-48927 | Msa1404100:intron | 30.0% | |
| !! | AGGTAATTTTGAAGAGCTTA+TGG | + | tig0023026:49188-49207 | None:intergenic | 30.0% |
| ATCCAAACAAGACTTAAGTT+TGG | - | tig0023026:49307-49326 | Msa1404100:intron | 30.0% | |
| !! | AACCAAACTTAAGTCTTGTT+TGG | + | tig0023026:49312-49331 | None:intergenic | 30.0% |
| !! | AGTTTTGTACTTCCATGATA+TGG | - | tig0023026:49393-49412 | Msa1404100:intron | 30.0% |
| ! | GTTTTGTACTTCCATGATAT+GGG | - | tig0023026:49394-49413 | Msa1404100:intron | 30.0% |
| TATCATCCCTAATAATGCTT+TGG | - | tig0023026:49497-49516 | Msa1404100:intron | 30.0% | |
| TATAACACCATATCGAACAT+TGG | + | tig0023026:49649-49668 | None:intergenic | 30.0% | |
| ! | ATTCTGAAAGAATGTTGGAT+GGG | + | tig0023026:49703-49722 | None:intergenic | 30.0% |
| CCAATTACATGCAAAAGATA+AGG | + | tig0023026:49880-49899 | None:intergenic | 30.0% | |
| ! | CCTTATCTTTTGCATGTAAT+TGG | - | tig0023026:49877-49896 | Msa1404100:intron | 30.0% |
| !! | TTGGTATTGGTATGTATTCT+TGG | - | tig0023026:50090-50109 | Msa1404100:intron | 30.0% |
| TTAAAATCAAAATAGTCGCC+AGG | + | tig0023026:50153-50172 | None:intergenic | 30.0% | |
| ! | TGGACACATATTTTACAAGA+GGG | + | tig0023026:50454-50473 | None:intergenic | 30.0% |
| ! | TTGGACACATATTTTACAAG+AGG | + | tig0023026:50455-50474 | None:intergenic | 30.0% |
| ! | AATCAATCATACTTTTAGCC+AGG | - | tig0023026:50485-50504 | Msa1404100:intron | 30.0% |
| ATACTCAAATACAAATGGTG+TGG | + | tig0023026:50547-50566 | None:intergenic | 30.0% | |
| !! | GACCATCACTAAATTTTTAG+TGG | + | tig0023026:50594-50613 | None:intergenic | 30.0% |
| TGATATTGTTAGTTGTGAAG+AGG | - | tig0023026:50780-50799 | Msa1404100:intron | 30.0% | |
| GATATTGTTAGTTGTGAAGA+GGG | - | tig0023026:50781-50800 | Msa1404100:intron | 30.0% | |
| ! | TCATGTTAAGAATTTGCTTG+AGG | + | tig0023026:50849-50868 | None:intergenic | 30.0% |
| TTACAGATAAAGTACGTCAT+GGG | - | tig0023026:50997-51016 | Msa1404100:intron | 30.0% | |
| !!! | CATACCCCATGATTTTTTTT+TGG | - | tig0023026:51029-51048 | Msa1404100:intron | 30.0% |
| ! | TCATTGGTTAATTACTCTCT+AGG | - | tig0023026:51142-51161 | Msa1404100:intron | 30.0% |
| ! | CATTGGTTAATTACTCTCTA+GGG | - | tig0023026:51143-51162 | Msa1404100:intron | 30.0% |
| ! | TGAAACGGAAATTTCAGTTT+TGG | + | tig0023026:51185-51204 | None:intergenic | 30.0% |
| ! | TTCCGTTTCATATTTAAGAC+TGG | - | tig0023026:51195-51214 | Msa1404100:CDS | 30.0% |
| ! | TCCGTTTCATATTTAAGACT+GGG | - | tig0023026:51196-51215 | Msa1404100:CDS | 30.0% |
| TCCCAGTCTTAAATATGAAA+CGG | + | tig0023026:51200-51219 | None:intergenic | 30.0% | |
| ACGAACAAAGTGATAATCCA+AGG | + | tig0023026:45052-45071 | None:intergenic | 35.0% | |
| ! | TCAAATTTAGCTCGTGGTAA+GGG | + | tig0023026:45150-45169 | None:intergenic | 35.0% |
| ! | TTCAAATTTAGCTCGTGGTA+AGG | + | tig0023026:45151-45170 | None:intergenic | 35.0% |
| ! | AGTTCTTCAAATTTAGCTCG+TGG | + | tig0023026:45156-45175 | None:intergenic | 35.0% |
| GAAAGAAGAAAGAAGAGAGA+AGG | - | tig0023026:45619-45638 | Msa1404100:intron | 35.0% | |
| GAAGAAGAAGATAAGACTAG+AGG | - | tig0023026:45807-45826 | Msa1404100:intron | 35.0% | |
| ! | TTTTCAGTCTCTTCCACAAA+CGG | + | tig0023026:46015-46034 | None:intergenic | 35.0% |
| CTAGGGCAAAATATTGCTTA+CGG | - | tig0023026:46311-46330 | Msa1404100:intron | 35.0% | |
| ACTTTAAGTAATACTCCCTC+CGG | - | tig0023026:46614-46633 | Msa1404100:intron | 35.0% | |
| TGCTTATAATAGTAACCGGA+GGG | + | tig0023026:46632-46651 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTAACCGG+AGG | + | tig0023026:46633-46652 | None:intergenic | 35.0% | |
| ACTTTAAGTAATACTCCCTC+CGG | - | tig0023026:46614-46633 | Msa1404100:intron | 35.0% | |
| TGCTTATAATAGTAACCGGA+GGG | + | tig0023026:46632-46651 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTAACCGG+AGG | + | tig0023026:46633-46652 | None:intergenic | 35.0% | |
| AAAGAGAAGAACAGAGTGAA+AGG | + | tig0023026:46932-46951 | None:intergenic | 35.0% | |
| CACTCTGTTCTTCTCTTTAT+TGG | - | tig0023026:46934-46953 | Msa1404100:CDS | 35.0% | |
| AAGATAAGGAAGATAAGGCA+AGG | + | tig0023026:47002-47021 | None:intergenic | 35.0% | |
| AGTGGAAGATAAGGAAGATA+AGG | + | tig0023026:47007-47026 | None:intergenic | 35.0% | |
| ! | CTGTTCTTGGTTTGATTCTT+AGG | - | tig0023026:47140-47159 | Msa1404100:intron | 35.0% |
| !! | TCACAGTTCATTTTTGCTAC+TGG | - | tig0023026:47166-47185 | Msa1404100:intron | 35.0% |
| GTAATAAAAGAAACTGGGTG+TGG | + | tig0023026:47212-47231 | None:intergenic | 35.0% | |
| !! | GATATGATGAATGATGGATC+TGG | + | tig0023026:47508-47527 | None:intergenic | 35.0% |
| ! | TTGATTCAAGTTAGGTCCAT+CGG | - | tig0023026:47551-47570 | Msa1404100:intron | 35.0% |
| CGATTTCGTAATGATGAGTT+AGG | - | tig0023026:47607-47626 | Msa1404100:intron | 35.0% | |
| !! | GTGTATATAAATGGTGGGTA+TGG | + | tig0023026:47676-47695 | None:intergenic | 35.0% |
| ACTAGGTGCGTGTATATAAA+TGG | + | tig0023026:47685-47704 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | tig0023026:47743-47762 | None:intergenic | 35.0% | |
| GATACTTCATTGTGTTGCAA+TGG | - | tig0023026:47869-47888 | Msa1404100:intron | 35.0% | |
| GTTATCAGAATTCAGAAGTG+TGG | + | tig0023026:48080-48099 | None:intergenic | 35.0% | |
| TAATCACCTTGGCAGAAAAT+CGG | - | tig0023026:48350-48369 | Msa1404100:intron | 35.0% | |
| ! | TTTTCTTAACCGAGACAAAC+CGG | + | tig0023026:48435-48454 | None:intergenic | 35.0% |
| ! | GCATGCTTTTAACAACTTCA+AGG | + | tig0023026:48713-48732 | None:intergenic | 35.0% |
| CAAAGAGGCTAATCAATACA+GGG | + | tig0023026:48944-48963 | None:intergenic | 35.0% | |
| ACAAAGAGGCTAATCAATAC+AGG | + | tig0023026:48945-48964 | None:intergenic | 35.0% | |
| !! | TTGATTAGCCTCTTTGTTGT+TGG | - | tig0023026:48948-48967 | Msa1404100:intron | 35.0% |
| !! | TTCACAAATTCTAAGGCAAG+TGG | + | tig0023026:49102-49121 | None:intergenic | 35.0% |
| !! | ATATACCAGGTGAGAGTATT+TGG | - | tig0023026:49612-49631 | Msa1404100:intron | 35.0% |
| !! | TATACCAGGTGAGAGTATTT+GGG | - | tig0023026:49613-49632 | Msa1404100:intron | 35.0% |
| !!! | TGAGAGTATTTGGGTTTTTC+CGG | - | tig0023026:49622-49641 | Msa1404100:intron | 35.0% |
| ! | CATTCTGAAAGAATGTTGGA+TGG | + | tig0023026:49704-49723 | None:intergenic | 35.0% |
| !! | CTTTTAGAAATTTTGCCGCA+CGG | - | tig0023026:50010-50029 | Msa1404100:intron | 35.0% |
| !! | TTCGTTTCATGCTTGGTTTT+TGG | - | tig0023026:50071-50090 | Msa1404100:intron | 35.0% |
| !!! | TCATGCTTGGTTTTTGGTAT+TGG | - | tig0023026:50077-50096 | Msa1404100:intron | 35.0% |
| ATTGGTATGTATTCTTGGAC+AGG | - | tig0023026:50095-50114 | Msa1404100:intron | 35.0% | |
| TTGGTATGTATTCTTGGACA+GGG | - | tig0023026:50096-50115 | Msa1404100:intron | 35.0% | |
| TTATGGTAGGACCATAAAGA+TGG | + | tig0023026:50396-50415 | None:intergenic | 35.0% | |
| AATACCCTTAACGTTGATCT+GGG | + | tig0023026:50511-50530 | None:intergenic | 35.0% | |
| !! | AGATCAACGTTAAGGGTATT+GGG | - | tig0023026:50511-50530 | Msa1404100:intron | 35.0% |
| ! | GTTAAGAATTTGCTTGAGGT+TGG | + | tig0023026:50845-50864 | None:intergenic | 35.0% |
| ! | GTGTGAGATCTGATTCATTT+TGG | + | tig0023026:50879-50898 | None:intergenic | 35.0% |
| TTAAAGGAATGCAAGGAGAA+AGG | + | tig0023026:50932-50951 | None:intergenic | 35.0% | |
| TTCTGTCTTAAAGGAATGCA+AGG | + | tig0023026:50939-50958 | None:intergenic | 35.0% | |
| GTTACAGATAAAGTACGTCA+TGG | - | tig0023026:50996-51015 | Msa1404100:intron | 35.0% | |
| AAAGTACGTCATGGGTAATT+TGG | - | tig0023026:51005-51024 | Msa1404100:intron | 35.0% | |
| CGAAATAACAAATGGGCATT+TGG | + | tig0023026:51113-51132 | None:intergenic | 35.0% | |
| ! | CATATTTAAGACTGGGAAGA+AGG | - | tig0023026:51203-51222 | Msa1404100:CDS | 35.0% |
| !! | CTCTGTGCAACTTTGATTTT+CGG | - | tig0023026:51238-51257 | Msa1404100:CDS | 35.0% |
| CTCTACCAAGGATCAAATTG+CGG | - | tig0023026:45110-45129 | Msa1404100:CDS | 40.0% | |
| AAGATCCGCAATTTGATCCT+TGG | + | tig0023026:45118-45137 | None:intergenic | 40.0% | |
| TCCAAGATGCAAGTTACAGA+TGG | - | tig0023026:45180-45199 | Msa1404100:intron | 40.0% | |
| ! | ACCATCTGTAACTTGCATCT+TGG | + | tig0023026:45184-45203 | None:intergenic | 40.0% |
| AGATGGTAACCTCATCTTGA+GGG | - | tig0023026:45197-45216 | Msa1404100:intron | 40.0% | |
| GCTACAGCTAAGGTAAGAAT+TGG | + | tig0023026:45367-45386 | None:intergenic | 40.0% | |
| AGAAAGAAGAGAGAAGGAAG+AGG | - | tig0023026:45625-45644 | Msa1404100:intron | 40.0% | |
| GAAAGAAGAGAGAAGGAAGA+GGG | - | tig0023026:45626-45645 | Msa1404100:intron | 40.0% | |
| CTTATCTTCTTCTTCCCACA+CGG | + | tig0023026:45802-45821 | None:intergenic | 40.0% | |
| CTCTTATCTCTTAATCCGTC+CGG | + | tig0023026:46827-46846 | None:intergenic | 40.0% | |
| CGTTTGAGCTGAAACTCAAA+GGG | + | tig0023026:46907-46926 | None:intergenic | 40.0% | |
| ACGTTTGAGCTGAAACTCAA+AGG | + | tig0023026:46908-46927 | None:intergenic | 40.0% | |
| AAGGAAATTGAGTCTCAGAG+AGG | + | tig0023026:46983-47002 | None:intergenic | 40.0% | |
| CAGAAACTGAGTGGAAGATA+AGG | + | tig0023026:47016-47035 | None:intergenic | 40.0% | |
| GGGAAGATGAAGAATTTCTC+TGG | - | tig0023026:47106-47125 | Msa1404100:intron | 40.0% | |
| ATCAAACCAAGAACAGTACC+AGG | + | tig0023026:47136-47155 | None:intergenic | 40.0% | |
| ATAAAAGAAACTGGGTGTGG+TGG | + | tig0023026:47209-47228 | None:intergenic | 40.0% | |
| TAAGATTGATTACAGCTGCG+TGG | - | tig0023026:47463-47482 | Msa1404100:CDS | 40.0% | |
| AAGTTAGGTCCATCGGATAT+AGG | - | tig0023026:47558-47577 | Msa1404100:intron | 40.0% | |
| GGTGCGTGTATATAAATGGT+GGG | + | tig0023026:47681-47700 | None:intergenic | 40.0% | |
| AGGTGCGTGTATATAAATGG+TGG | + | tig0023026:47682-47701 | None:intergenic | 40.0% | |
| !! | ACGCACCTAGTCTTATAAAG+AGG | - | tig0023026:47694-47713 | Msa1404100:intron | 40.0% |
| CCTCTCCTCTTTATAAGACT+AGG | + | tig0023026:47702-47721 | None:intergenic | 40.0% | |
| !! | CCTAGTCTTATAAAGAGGAG+AGG | - | tig0023026:47699-47718 | Msa1404100:intron | 40.0% |
| CCTTACAAAACCGGATTGTA+AGG | + | tig0023026:47734-47753 | None:intergenic | 40.0% | |
| !! | CCTTACAATCCGGTTTTGTA+AGG | - | tig0023026:47731-47750 | Msa1404100:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | tig0023026:47741-47760 | Msa1404100:intron | 40.0% |
| ! | CAGAATTCAGAAGTGTGGAA+GGG | + | tig0023026:48075-48094 | None:intergenic | 40.0% |
| ! | TCAGAATTCAGAAGTGTGGA+AGG | + | tig0023026:48076-48095 | None:intergenic | 40.0% |
| CAGTCAGGTTCAGATTACAA+TGG | + | tig0023026:48287-48306 | None:intergenic | 40.0% | |
| TAATCTGAACCTGACTGATC+CGG | - | tig0023026:48290-48309 | Msa1404100:intron | 40.0% | |
| ! | AGAAAATCGGACTAGAAACC+AGG | - | tig0023026:48363-48382 | Msa1404100:intron | 40.0% |
| !! | GCTTCTTTTTAGTGGTTTCC+TGG | + | tig0023026:48384-48403 | None:intergenic | 40.0% |
| !!! | AGAAGGGTGTTTTCAAAGGA+TGG | - | tig0023026:48599-48618 | Msa1404100:intron | 40.0% |
| CAATAACCATGCTTGGATGT+TGG | - | tig0023026:48780-48799 | Msa1404100:intron | 40.0% | |
| ! | CAGTTTCTTGATAGCCTCAA+TGG | - | tig0023026:48842-48861 | Msa1404100:intron | 40.0% |
| TTCGTTGGATGCTTATGCTT+TGG | - | tig0023026:48896-48915 | Msa1404100:intron | 40.0% | |
| !! | CCTCTTTGTTGTTGGTGATT+GGG | - | tig0023026:48956-48975 | Msa1404100:intron | 40.0% |
| !! | TAAGTTTGGTTCTTGACCAC+AGG | - | tig0023026:49321-49340 | Msa1404100:intron | 40.0% |
| ! | GATATTGTTGCTGTTACCTG+TGG | + | tig0023026:49340-49359 | None:intergenic | 40.0% |
| AATGGCAATGTCCCATATCA+TGG | + | tig0023026:49408-49427 | None:intergenic | 40.0% | |
| !! | GATATGGGACATTGCCATTT+TGG | - | tig0023026:49409-49428 | Msa1404100:intron | 40.0% |
| TTTGACACTCCTCTCCAAAA+TGG | + | tig0023026:49426-49445 | None:intergenic | 40.0% | |
| AGGCAAAAGCAACAGAAATC+TGG | + | tig0023026:49453-49472 | None:intergenic | 40.0% | |
| AATTGAGATCCAGCTCATGA+AGG | + | tig0023026:49473-49492 | None:intergenic | 40.0% | |
| ATGCTTTGGTTAATAGCAGC+AGG | - | tig0023026:49511-49530 | Msa1404100:intron | 40.0% | |
| TGCTTTGGTTAATAGCAGCA+GGG | - | tig0023026:49512-49531 | Msa1404100:intron | 40.0% | |
| GGGTAGCAGACCAAAATTAT+CGG | - | tig0023026:49532-49551 | Msa1404100:intron | 40.0% | |
| GGTAGCAGACCAAAATTATC+GGG | - | tig0023026:49533-49552 | Msa1404100:intron | 40.0% | |
| TAGAAGTGGTAGAGAAGATC+CGG | + | tig0023026:49560-49579 | None:intergenic | 40.0% | |
| CACCTGGTATATCAATCCAA+CGG | + | tig0023026:49604-49623 | None:intergenic | 40.0% | |
| AAAACCCAAATACTCTCACC+TGG | + | tig0023026:49620-49639 | None:intergenic | 40.0% | |
| ! | GTTTTCCTCCCATTGACAAT+CGG | + | tig0023026:49809-49828 | None:intergenic | 40.0% |
| TTGTTACATCGTTGCACTGT+GGG | + | tig0023026:49947-49966 | None:intergenic | 40.0% | |
| TTTGTTACATCGTTGCACTG+TGG | + | tig0023026:49948-49967 | None:intergenic | 40.0% | |
| AACTAACTACATAAGCCGTG+CGG | + | tig0023026:50028-50047 | None:intergenic | 40.0% | |
| TCTGTTTGACCCTCATACAT+CGG | - | tig0023026:50047-50066 | Msa1404100:intron | 40.0% | |
| GAAACGAAACCGATGTATGA+GGG | + | tig0023026:50059-50078 | None:intergenic | 40.0% | |
| TGAAACGAAACCGATGTATG+AGG | + | tig0023026:50060-50079 | None:intergenic | 40.0% | |
| TGGTATGTATTCTTGGACAG+GGG | - | tig0023026:50097-50116 | Msa1404100:intron | 40.0% | |
| TAGAGACTTAATGCAGCTTC+AGG | + | tig0023026:50293-50312 | None:intergenic | 40.0% | |
| TCGCTACTTGACAAGAAAAG+AGG | - | tig0023026:50339-50358 | Msa1404100:intron | 40.0% | |
| CGCTACTTGACAAGAAAAGA+GGG | - | tig0023026:50340-50359 | Msa1404100:intron | 40.0% | |
| CAATACCCTTAACGTTGATC+TGG | + | tig0023026:50512-50531 | None:intergenic | 40.0% | |
| ! | CAGATCAACGTTAAGGGTAT+TGG | - | tig0023026:50510-50529 | Msa1404100:intron | 40.0% |
| !! | GATCAACGTTAAGGGTATTG+GGG | - | tig0023026:50512-50531 | Msa1404100:intron | 40.0% |
| CTCAAATACAAATGGTGTGG+AGG | + | tig0023026:50544-50563 | None:intergenic | 40.0% | |
| ATGAATCAGATCTCACACAC+TGG | - | tig0023026:50881-50900 | Msa1404100:intron | 40.0% | |
| ! | AACAAGCACTGCAAATCACT+TGG | + | tig0023026:50979-50998 | None:intergenic | 40.0% |
| GGGATAAGGAGAATTGAACT+CGG | - | tig0023026:51050-51069 | Msa1404100:intron | 40.0% | |
| GGATAAGGAGAATTGAACTC+GGG | - | tig0023026:51051-51070 | Msa1404100:intron | 40.0% | |
| AGTCGTATGATTCTCGCTTA+GGG | + | tig0023026:51087-51106 | None:intergenic | 40.0% | |
| TAGTCGTATGATTCTCGCTT+AGG | + | tig0023026:51088-51107 | None:intergenic | 40.0% | |
| GCGACGACGAAATAACAAAT+GGG | + | tig0023026:51120-51139 | None:intergenic | 40.0% | |
| TGCGACGACGAAATAACAAA+TGG | + | tig0023026:51121-51140 | None:intergenic | 40.0% | |
| TATTTCGTCGTCGCATTCAT+TGG | - | tig0023026:51126-51145 | Msa1404100:intron | 40.0% | |
| !! | ACGGAAATTTCAGTTTTGGC+TGG | + | tig0023026:51181-51200 | None:intergenic | 40.0% |
| TTATCTGCCACTGAAATTGC+AGG | - | tig0023026:51275-51294 | Msa1404100:CDS | 40.0% | |
| TCAATCTCCTGCAATTTCAG+TGG | + | tig0023026:51285-51304 | None:intergenic | 40.0% | |
| TGAAATTGCAGGAGATTGAC+TGG | - | tig0023026:51286-51305 | Msa1404100:CDS | 40.0% | |
| GTTCGTGAACAAGTACGTGA+TGG | - | tig0023026:45066-45085 | Msa1404100:CDS | 45.0% | |
| AGTCTCTCATGTCTCTACCA+AGG | - | tig0023026:45098-45117 | Msa1404100:CDS | 45.0% | |
| CAGATGGTAACCTCATCTTG+AGG | - | tig0023026:45196-45215 | Msa1404100:intron | 45.0% | |
| GATGGTAACCTCATCTTGAG+GGG | - | tig0023026:45198-45217 | Msa1404100:intron | 45.0% | |
| ATGGTAACCTCATCTTGAGG+GGG | - | tig0023026:45199-45218 | Msa1404100:intron | 45.0% | |
| ! | CGCGGTAAATTTTCCGTTTG+TGG | - | tig0023026:45999-46018 | Msa1404100:intron | 45.0% |
| TGTTTATAACAGTGGCCGGA+CGG | - | tig0023026:46809-46828 | Msa1404100:intron | 45.0% | |
| AAGAATTTCTCTGGCACACC+TGG | - | tig0023026:47115-47134 | Msa1404100:intron | 45.0% | |
| CTTATCAGGCCTATATCCGA+TGG | + | tig0023026:47570-47589 | None:intergenic | 45.0% | |
| TGGGATCAGAGCTTATCGAT+CGG | - | tig0023026:47649-47668 | Msa1404100:intron | 45.0% | |
| ! | TCTAGTCCGATTTTCTGCCA+AGG | + | tig0023026:48359-48378 | None:intergenic | 45.0% |
| GCATCAAAACCGGACAAAAC+CGG | - | tig0023026:48402-48421 | Msa1404100:intron | 45.0% | |
| CTGACCTTTAACCCTTGAAC+CGG | - | tig0023026:48464-48483 | Msa1404100:intron | 45.0% | |
| ! | GTCTACACAGGTTTAAGGTC+CGG | - | tig0023026:48488-48507 | Msa1404100:intron | 45.0% |
| CTACATCCAACATCCAAGCA+TGG | + | tig0023026:48789-48808 | None:intergenic | 45.0% | |
| !! | GAGTTTTGTGCTTGCTTCGT+TGG | - | tig0023026:48881-48900 | Msa1404100:intron | 45.0% |
| !! | GCCTCTTTGTTGTTGGTGAT+TGG | - | tig0023026:48955-48974 | Msa1404100:intron | 45.0% |
| CCCAATCACCAACAACAAAG+AGG | + | tig0023026:48959-48978 | None:intergenic | 45.0% | |
| !! | TTGCTTTTGCCTTCATGAGC+TGG | - | tig0023026:49461-49480 | Msa1404100:intron | 45.0% |
| CAGACCAAAATTATCGGGTC+CGG | - | tig0023026:49538-49557 | Msa1404100:intron | 45.0% | |
| ! | AGATCCGGACCCGATAATTT+TGG | + | tig0023026:49545-49564 | None:intergenic | 45.0% |
| GTATATCAATCCAACGGCCA+AGG | + | tig0023026:49598-49617 | None:intergenic | 45.0% | |
| TTCCGGTCCAATGTTCGATA+TGG | - | tig0023026:49639-49658 | Msa1404100:intron | 45.0% | |
| CACCATATCGAACATTGGAC+CGG | + | tig0023026:49644-49663 | None:intergenic | 45.0% | |
| AGATAGCAGCCGATTGTCAA+TGG | - | tig0023026:49797-49816 | Msa1404100:intron | 45.0% | |
| GATAGCAGCCGATTGTCAAT+GGG | - | tig0023026:49798-49817 | Msa1404100:intron | 45.0% | |
| AGATAGCATTCTACCGCATG+CGG | - | tig0023026:49982-50001 | Msa1404100:intron | 45.0% | |
| ! | TCTAAAAGTGCAACCGCATG+CGG | + | tig0023026:49998-50017 | None:intergenic | 45.0% |
| !! | CATCGGTTTCGTTTCATGCT+TGG | - | tig0023026:50064-50083 | Msa1404100:intron | 45.0% |
| GTCCTGGATCTAATGTACCT+TGG | - | tig0023026:50127-50146 | Msa1404100:intron | 45.0% | |
| GTGAGTGACAAAACAAGGGT+GGG | + | tig0023026:50371-50390 | None:intergenic | 45.0% | |
| AGTGAGTGACAAAACAAGGG+TGG | + | tig0023026:50372-50391 | None:intergenic | 45.0% | |
| GGCAGTGAGTGACAAAACAA+GGG | + | tig0023026:50375-50394 | None:intergenic | 45.0% | |
| TGGCAGTGAGTGACAAAACA+AGG | + | tig0023026:50376-50395 | None:intergenic | 45.0% | |
| GTCACTCACTGCCATCTTTA+TGG | - | tig0023026:50382-50401 | Msa1404100:intron | 45.0% | |
| !! | AAAAATAAATAATAATACTT+TGG | + | tig0023026:47278-47297 | None:intergenic | 5.0% |
| CTATACACCCCCTCAAGATG+AGG | + | tig0023026:45209-45228 | None:intergenic | 50.0% | |
| ! | CTCATCTTGAGGGGGTGTAT+AGG | - | tig0023026:45207-45226 | Msa1404100:intron | 50.0% |
| GATGCACTGTGCTACAGCTA+AGG | + | tig0023026:45377-45396 | None:intergenic | 50.0% | |
| TGTGTGTGGTGTAACCGTGT+GGG | - | tig0023026:45785-45804 | Msa1404100:intron | 50.0% | |
| GGGATCAGAGCTTATCGATC+GGG | - | tig0023026:47650-47669 | Msa1404100:intron | 50.0% | |
| GCACTGCTCACCTTACAATC+CGG | - | tig0023026:47721-47740 | Msa1404100:intron | 50.0% | |
| TCAAAACCGGACAAAACCGG+CGG | - | tig0023026:48405-48424 | Msa1404100:intron | 50.0% | |
| CCTTAAACCTGTGTAGACGC+CGG | + | tig0023026:48486-48505 | None:intergenic | 50.0% | |
| CAAAACTGTAAGTCCAGCCG+AGG | + | tig0023026:49380-49399 | None:intergenic | 50.0% | |
| !!! | GGGACATTGCCATTTTGGAG+AGG | - | tig0023026:49414-49433 | Msa1404100:intron | 50.0% |
| GGCCGTTGGATTGATATACC+AGG | - | tig0023026:49599-49618 | Msa1404100:intron | 50.0% | |
| ACATCGTTGCACTGTGGGAA+AGG | + | tig0023026:49942-49961 | None:intergenic | 50.0% | |
| GGCCAAGGTACATTAGATCC+AGG | + | tig0023026:50132-50151 | None:intergenic | 50.0% | |
| GGATCTAATGTACCTTGGCC+TGG | - | tig0023026:50132-50151 | Msa1404100:intron | 50.0% | |
| TCAAAATAGTCGCCAGGCCA+AGG | + | tig0023026:50147-50166 | None:intergenic | 50.0% | |
| CAGGCCCAGATCAACGTTAA+GGG | - | tig0023026:50504-50523 | Msa1404100:intron | 50.0% | |
| !! | CAACGTTAAGGGTATTGGGG+CGG | - | tig0023026:50515-50534 | Msa1404100:intron | 50.0% |
| GTGTGTGTGGTGTAACCGTG+TGG | - | tig0023026:45784-45803 | Msa1404100:intron | 55.0% | |
| GGCACACCTGGTACTGTTCT+TGG | - | tig0023026:47127-47146 | Msa1404100:intron | 55.0% | |
| !! | ACGTGTGTCTGGTTCTCAGC+CGG | + | tig0023026:48312-48331 | None:intergenic | 55.0% |
| CTGAGAACCAGACACACGTC+CGG | - | tig0023026:48313-48332 | Msa1404100:intron | 55.0% | |
| ATTTGGACCGGACGTGTGTC+TGG | + | tig0023026:48323-48342 | None:intergenic | 55.0% | |
| !! | GACGCCGGTTCAAGGGTTAA+AGG | + | tig0023026:48471-48490 | None:intergenic | 55.0% |
| !! | CTGTGTAGACGCCGGTTCAA+GGG | + | tig0023026:48478-48497 | None:intergenic | 55.0% |
| CCGGCGTCTACACAGGTTTA+AGG | - | tig0023026:48483-48502 | Msa1404100:intron | 55.0% | |
| TCTAGCTGCAGCTTCTGCCT+CGG | - | tig0023026:49360-49379 | Msa1404100:intron | 55.0% | |
| GCTGCTAGAGGGGATAGAAG+TGG | + | tig0023026:49574-49593 | None:intergenic | 55.0% | |
| AGCAGCCGATTGTCAATGGG+AGG | - | tig0023026:49801-49820 | Msa1404100:intron | 55.0% | |
| CCTTAACGTTGATCTGGGCC+TGG | + | tig0023026:50506-50525 | None:intergenic | 55.0% | |
| CCAGGCCCAGATCAACGTTA+AGG | - | tig0023026:50503-50522 | Msa1404100:intron | 55.0% | |
| ATTCTCGCTTAGGGTGCGAG+AGG | + | tig0023026:51078-51097 | None:intergenic | 55.0% | |
| GGTTCTCAGCCGGATCAGTC+AGG | + | tig0023026:48302-48321 | None:intergenic | 60.0% | |
| !! | CCTGTGTAGACGCCGGTTCA+AGG | + | tig0023026:48479-48498 | None:intergenic | 60.0% |
| CCTTGAACCGGCGTCTACAC+AGG | - | tig0023026:48476-48495 | Msa1404100:intron | 60.0% | |
| TATCCCCTCTAGCAGCGCCT+TGG | - | tig0023026:49578-49597 | Msa1404100:intron | 60.0% | |
| GGACAGGGGTTCTTGAGTCC+TGG | - | tig0023026:50111-50130 | Msa1404100:intron | 60.0% | |
| !!! | GGCAAGCCGCCGGTTTTGTC+CGG | + | tig0023026:48414-48433 | None:intergenic | 65.0% |
| GGACAAAACCGGCGGCTTGC+CGG | - | tig0023026:48413-48432 | Msa1404100:intron | 65.0% | |
| GAGACAAACCGGCAAGCCGC+CGG | + | tig0023026:48424-48443 | None:intergenic | 65.0% | |
| !! | GGCGGCTTGCCGGTTTGTCT+CGG | - | tig0023026:48423-48442 | Msa1404100:intron | 65.0% |
| !! | ACGGCCAAGGCGCTGCTAGA+GGG | + | tig0023026:49585-49604 | None:intergenic | 65.0% |
| !! | AACGGCCAAGGCGCTGCTAG+AGG | + | tig0023026:49586-49605 | None:intergenic | 65.0% |
| TCTAGCAGCGCCTTGGCCGT+TGG | - | tig0023026:49585-49604 | Msa1404100:intron | 65.0% | |
| GCTGCAGCTTCTGCCTCGGC+TGG | - | tig0023026:49364-49383 | Msa1404100:intron | 70.0% | |
| !! | CGGCCAAGGCGCTGCTAGAG+GGG | + | tig0023026:49584-49603 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023026 | gene | 45036 | 51314 | 45036 | ID=Msa1404100;Name=Msa1404100 |
| tig0023026 | mRNA | 45036 | 51314 | 45036 | ID=Msa1404100-mRNA-1;Parent=Msa1404100;Name=Msa1404100-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0.4|0.16|0.66|1|1|6|0|243 |
| tig0023026 | exon | 51149 | 51314 | 51149 | ID=Msa1404100-mRNA-1:exon:19609;Parent=Msa1404100-mRNA-1 |
| tig0023026 | exon | 49108 | 49243 | 49108 | ID=Msa1404100-mRNA-1:exon:19608;Parent=Msa1404100-mRNA-1 |
| tig0023026 | exon | 47373 | 47505 | 47373 | ID=Msa1404100-mRNA-1:exon:19607;Parent=Msa1404100-mRNA-1 |
| tig0023026 | exon | 46904 | 47007 | 46904 | ID=Msa1404100-mRNA-1:exon:19606;Parent=Msa1404100-mRNA-1 |
| tig0023026 | exon | 46730 | 46820 | 46730 | ID=Msa1404100-mRNA-1:exon:19605;Parent=Msa1404100-mRNA-1 |
| tig0023026 | exon | 45036 | 45137 | 45036 | ID=Msa1404100-mRNA-1:exon:19604;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 51149 | 51314 | 51149 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 49108 | 49243 | 49108 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 47373 | 47505 | 47373 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 46904 | 47007 | 46904 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 46730 | 46820 | 46730 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| tig0023026 | CDS | 45036 | 45137 | 45036 | ID=Msa1404100-mRNA-1:cds;Parent=Msa1404100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
