Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016480 | sp|Q9LT71|RTNLK_ARATH | 53.846 | 195 | 82 | 1 | 10 | 204 | 14 | 200 | 2.20e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016480 | I3T8E3 | 97.059 | 204 | 6 | 0 | 1 | 204 | 1 | 204 | 7.02e-140 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016480 | Msa0612840 | 0.808862 | 2.513678e-50 | -8.615850e-47 |
| Msa0016480 | Msa1131350 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016480 | MtrunA17_Chr1g0208091 | 96.569 | 204 | 7 | 0 | 1 | 204 | 1 | 204 | 6.88e-143 | 396 |
| Msa0016480 | MtrunA17_Chr8g0387631 | 37.113 | 194 | 122 | 0 | 9 | 202 | 65 | 258 | 4.81e-39 | 134 |
| Msa0016480 | MtrunA17_Chr8g0348131 | 35.025 | 197 | 124 | 1 | 9 | 201 | 69 | 265 | 1.16e-33 | 120 |
| Msa0016480 | MtrunA17_Chr4g0005701 | 38.693 | 199 | 122 | 0 | 5 | 203 | 10 | 208 | 7.93e-32 | 114 |
| Msa0016480 | MtrunA17_Chr3g0095441 | 37.288 | 177 | 111 | 0 | 9 | 185 | 50 | 226 | 1.18e-31 | 115 |
| Msa0016480 | MtrunA17_Chr1g0202401 | 34.409 | 186 | 122 | 0 | 9 | 194 | 58 | 243 | 3.84e-31 | 114 |
| Msa0016480 | MtrunA17_Chr5g0442361 | 34.343 | 198 | 124 | 2 | 9 | 204 | 49 | 242 | 5.82e-29 | 108 |
| Msa0016480 | MtrunA17_Chr1g0209261 | 28.571 | 196 | 136 | 1 | 9 | 204 | 15 | 206 | 2.02e-28 | 105 |
| Msa0016480 | MtrunA17_Chr8g0376101 | 29.557 | 203 | 143 | 0 | 1 | 203 | 20 | 222 | 2.27e-28 | 106 |
| Msa0016480 | MtrunA17_Chr6g0453331 | 34.409 | 186 | 122 | 0 | 17 | 202 | 12 | 197 | 1.78e-26 | 100 |
| Msa0016480 | MtrunA17_Chr5g0402811 | 26.368 | 201 | 143 | 1 | 9 | 204 | 24 | 224 | 2.80e-25 | 98.2 |
| Msa0016480 | MtrunA17_Chr5g0402701 | 27.536 | 138 | 100 | 0 | 21 | 158 | 344 | 481 | 5.16e-16 | 75.9 |
| Msa0016480 | MtrunA17_Chr3g0108661 | 28.659 | 164 | 117 | 0 | 5 | 168 | 50 | 213 | 1.02e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016480 | AT3G19460.1 | 53.846 | 195 | 82 | 1 | 10 | 204 | 14 | 200 | 2.24e-65 | 200 |
| Msa0016480 | AT3G19460.5 | 53.846 | 195 | 82 | 1 | 10 | 204 | 14 | 200 | 2.24e-65 | 200 |
| Msa0016480 | AT3G19460.4 | 53.846 | 195 | 82 | 1 | 10 | 204 | 14 | 200 | 2.24e-65 | 200 |
| Msa0016480 | AT2G15280.1 | 47.980 | 198 | 102 | 1 | 8 | 204 | 4 | 201 | 7.25e-63 | 194 |
| Msa0016480 | AT3G19460.3 | 46.288 | 229 | 81 | 2 | 10 | 204 | 14 | 234 | 9.10e-60 | 187 |
| Msa0016480 | AT3G19460.7 | 46.288 | 229 | 81 | 2 | 10 | 204 | 14 | 234 | 9.10e-60 | 187 |
| Msa0016480 | AT3G19460.2 | 46.154 | 221 | 77 | 2 | 18 | 204 | 6 | 218 | 5.43e-56 | 177 |
| Msa0016480 | AT3G19460.6 | 46.154 | 221 | 77 | 2 | 18 | 204 | 6 | 218 | 5.43e-56 | 177 |
| Msa0016480 | AT2G15280.2 | 38.889 | 198 | 81 | 2 | 8 | 204 | 4 | 162 | 2.24e-42 | 140 |
| Msa0016480 | AT4G23630.1 | 36.735 | 196 | 120 | 2 | 9 | 202 | 80 | 273 | 4.90e-36 | 127 |
| Msa0016480 | AT4G23630.2 | 36.735 | 196 | 120 | 2 | 9 | 202 | 80 | 273 | 4.90e-36 | 127 |
| Msa0016480 | AT3G61560.1 | 35.751 | 193 | 124 | 0 | 9 | 201 | 59 | 251 | 2.74e-34 | 122 |
| Msa0016480 | AT3G61560.2 | 35.751 | 193 | 124 | 0 | 9 | 201 | 59 | 251 | 2.74e-34 | 122 |
| Msa0016480 | AT2G46170.1 | 36.269 | 193 | 123 | 0 | 9 | 201 | 59 | 251 | 8.81e-34 | 121 |
| Msa0016480 | AT3G10915.2 | 33.333 | 198 | 132 | 0 | 5 | 202 | 28 | 225 | 1.59e-33 | 120 |
| Msa0016480 | AT5G41600.1 | 34.500 | 200 | 123 | 3 | 9 | 202 | 59 | 256 | 3.02e-33 | 120 |
| Msa0016480 | AT3G10915.7 | 33.333 | 198 | 132 | 0 | 5 | 202 | 53 | 250 | 3.58e-33 | 119 |
| Msa0016480 | AT4G11220.1 | 31.443 | 194 | 133 | 0 | 9 | 202 | 76 | 269 | 3.62e-33 | 120 |
| Msa0016480 | AT3G10915.4 | 33.668 | 199 | 131 | 1 | 5 | 202 | 28 | 226 | 1.39e-32 | 117 |
| Msa0016480 | AT1G64090.1 | 34.031 | 191 | 126 | 0 | 9 | 199 | 55 | 245 | 3.21e-32 | 117 |
| Msa0016480 | AT3G18260.1 | 31.818 | 198 | 134 | 1 | 5 | 202 | 27 | 223 | 5.14e-32 | 115 |
| Msa0016480 | AT3G10260.1 | 34.848 | 198 | 125 | 3 | 9 | 204 | 52 | 247 | 1.58e-31 | 115 |
| Msa0016480 | AT3G10260.2 | 34.848 | 198 | 125 | 3 | 9 | 204 | 52 | 247 | 1.58e-31 | 115 |
| Msa0016480 | AT3G10260.3 | 34.848 | 198 | 125 | 3 | 9 | 204 | 72 | 267 | 2.05e-31 | 115 |
| Msa0016480 | AT1G64090.2 | 34.078 | 179 | 118 | 0 | 18 | 196 | 80 | 258 | 6.52e-30 | 111 |
| Msa0016480 | AT3G10915.3 | 32.984 | 191 | 128 | 0 | 12 | 202 | 2 | 192 | 8.68e-30 | 109 |
| Msa0016480 | AT3G54120.1 | 43.210 | 162 | 88 | 2 | 8 | 167 | 14 | 173 | 8.93e-30 | 109 |
| Msa0016480 | AT3G10915.6 | 33.152 | 184 | 123 | 0 | 19 | 202 | 10 | 193 | 1.95e-29 | 108 |
| Msa0016480 | AT3G10915.5 | 33.155 | 187 | 124 | 1 | 17 | 202 | 62 | 248 | 6.32e-28 | 105 |
| Msa0016480 | AT3G61560.3 | 39.716 | 141 | 85 | 0 | 9 | 149 | 59 | 199 | 2.13e-27 | 103 |
| Msa0016480 | AT4G01230.2 | 33.333 | 189 | 119 | 4 | 9 | 195 | 61 | 244 | 2.18e-21 | 88.6 |
| Msa0016480 | AT4G01230.1 | 32.804 | 189 | 118 | 5 | 9 | 195 | 61 | 242 | 3.16e-19 | 82.8 |
| Msa0016480 | AT3G10915.1 | 33.333 | 123 | 82 | 0 | 5 | 127 | 28 | 150 | 5.31e-19 | 80.5 |
| Msa0016480 | AT2G46170.2 | 35.714 | 112 | 72 | 0 | 9 | 120 | 59 | 170 | 9.56e-18 | 77.8 |
| Msa0016480 | AT2G23640.1 | 25.161 | 155 | 116 | 0 | 15 | 169 | 13 | 167 | 1.84e-16 | 74.7 |
| Msa0016480 | AT1G68230.2 | 27.411 | 197 | 137 | 2 | 9 | 203 | 22 | 214 | 2.20e-16 | 74.7 |
| Msa0016480 | AT1G68230.1 | 32.394 | 142 | 90 | 2 | 9 | 148 | 22 | 159 | 2.27e-12 | 62.8 |
Find 77 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAATGTACTGCAAATT+TGG | 0.147620 | 1_1:-27262511 | Msa0016480:CDS |
| ATTACTGATTAAACAATTTC+AGG | 0.202496 | 1_1:+27260929 | None:intergenic |
| TGGTAGTATGGCATGGATTT+TGG | 0.224597 | 1_1:-27260991 | Msa0016480:three_prime_UTR |
| TTGTTGTGATTCTGTTTCTA+TGG | 0.238941 | 1_1:-27263015 | Msa0016480:CDS |
| ATCAAAGCTCTTTGTCGATT+TGG | 0.264424 | 1_1:+27261194 | None:intergenic |
| GTGGCTATTTCTTTCGGTTT+TGG | 0.266498 | 1_1:+27263490 | None:intergenic |
| AAGCTGCTAATCTTCTTAAT+AGG | 0.336132 | 1_1:-27262988 | Msa0016480:intron |
| TCTGCCTGATCTGGAGATTT+CGG | 0.363024 | 1_1:-27262552 | Msa0016480:CDS |
| ACTTCCTCCTCTGCCTGATC+TGG | 0.365713 | 1_1:-27262561 | Msa0016480:CDS |
| TTCAAATAGGAATGCTGGTC+TGG | 0.367980 | 1_1:-27260876 | Msa0016480:three_prime_UTR |
| GAGGTTCTACCATGGCGATT+GGG | 0.368950 | 1_1:+27263385 | None:intergenic |
| ACTGCAAATTTGGCTAAATC+AGG | 0.373614 | 1_1:-27262501 | Msa0016480:CDS |
| CGCAACAAATGGAGTATTTG+AGG | 0.395015 | 1_1:-27261287 | Msa0016480:three_prime_UTR |
| GTTACGGTGGCTATTTCTTT+CGG | 0.396283 | 1_1:+27263484 | None:intergenic |
| CACATGATATAGCAATTAAC+AGG | 0.396290 | 1_1:-27262466 | Msa0016480:CDS |
| CACGCTCTCGGCTCTGGCTT+AGG | 0.400873 | 1_1:-27263345 | Msa0016480:intron |
| TTGTTGACAATATCTTATAT+TGG | 0.407398 | 1_1:-27262301 | Msa0016480:CDS |
| GTTCATCACGCTCTCGGCTC+TGG | 0.414137 | 1_1:-27263351 | Msa0016480:CDS |
| CATCACTGCTTGCTTACAAA+AGG | 0.430015 | 1_1:+27263532 | None:intergenic |
| TGGTTAACTGAAGTCTAGTT+AGG | 0.431882 | 1_1:-27261326 | Msa0016480:three_prime_UTR |
| TGAGGTTCTACCATGGCGAT+TGG | 0.434427 | 1_1:+27263384 | None:intergenic |
| TTGGCTAAATCAGGCTTTGT+CGG | 0.437383 | 1_1:-27262492 | Msa0016480:CDS |
| GCCCACGAATGAGCAGGGTC+TGG | 0.446174 | 1_1:-27263576 | None:intergenic |
| ACTTGGTGAATCAGGTTGTT+GGG | 0.454940 | 1_1:-27262327 | Msa0016480:intron |
| TTCTCCGAAATCTCCAGATC+AGG | 0.456361 | 1_1:+27262548 | None:intergenic |
| AAACGATAAGAAATTGTAAC+CGG | 0.457016 | 1_1:+27263060 | None:intergenic |
| ACAGATGGATGCGCAACAAA+TGG | 0.457805 | 1_1:-27261298 | Msa0016480:three_prime_UTR |
| AAGGAGTGCTGTTAGAGTTA+CGG | 0.467158 | 1_1:+27263462 | None:intergenic |
| ATCCAGACCCTGCTCATTCG+TGG | 0.468050 | 1_1:+27263574 | None:intergenic |
| TGTTGTGATTCTGTTTCTAT+GGG | 0.474872 | 1_1:-27263014 | Msa0016480:CDS |
| AGCCGAGCCCACGAATGAGC+AGG | 0.475226 | 1_1:-27263582 | None:intergenic |
| AGGTTCTACCATGGCGATTG+GGG | 0.475508 | 1_1:+27263386 | None:intergenic |
| TCACTAATCATGAGTTAAAA+CGG | 0.477999 | 1_1:+27261236 | None:intergenic |
| TGGTATCTGTTCGAGCGAGC+CGG | 0.484056 | 1_1:-27263079 | Msa0016480:CDS |
| TGCTGTTAGAGTTACGGTTA+CGG | 0.484777 | 1_1:+27263468 | None:intergenic |
| ATGTGTTGCTATGGAAGAAT+TGG | 0.489319 | 1_1:-27263141 | Msa0016480:CDS |
| TACATATGTAGATCAAAGTC+AGG | 0.491717 | 1_1:+27262263 | None:intergenic |
| AGATCAGGCAGAGGAGGAAG+TGG | 0.496919 | 1_1:+27262563 | None:intergenic |
| TGGTTGCAGAGTCGCGAGTA+AGG | 0.501954 | 1_1:+27263419 | None:intergenic |
| CAAAGAAAAGAAAGTGCAGT+AGG | 0.516683 | 1_1:-27261995 | Msa0016480:intron |
| AACTTGGTGAATCAGGTTGT+TGG | 0.517512 | 1_1:-27262328 | Msa0016480:intron |
| TCTTCTCATCAATTCGATCC+TGG | 0.524568 | 1_1:+27262100 | None:intergenic |
| CAGAAGAGGGTGGAAAAGAA+AGG | 0.526038 | 1_1:-27261057 | Msa0016480:three_prime_UTR |
| ATCTCCAGATCAGGCAGAGG+AGG | 0.526888 | 1_1:+27262557 | None:intergenic |
| TCTTAGCTTGTCTCTTCCTG+TGG | 0.528014 | 1_1:-27262136 | Msa0016480:CDS |
| CACAGTATCAAAAGATTCGC+AGG | 0.529807 | 1_1:-27262050 | Msa0016480:CDS |
| TTTGAAATTCAGTGTGCAGA+TGG | 0.530237 | 1_1:-27261346 | Msa0016480:intron |
| GAATTTGTTTCTTTGTGCAC+AGG | 0.535305 | 1_1:-27262444 | Msa0016480:intron |
| TTTAGGATGGTAGTATGGCA+TGG | 0.537897 | 1_1:-27260998 | Msa0016480:three_prime_UTR |
| TGCTTGCTTACAAAAGGAAA+CGG | 0.541906 | 1_1:+27263538 | None:intergenic |
| ATTTCCGTTCATCACGCTCT+CGG | 0.545560 | 1_1:-27263357 | Msa0016480:CDS |
| GAGAAGATTCATGTGGTACA+TGG | 0.548698 | 1_1:-27262084 | Msa0016480:CDS |
| ACTCATGAGAACTTGCACAT+TGG | 0.550565 | 1_1:-27261029 | Msa0016480:three_prime_UTR |
| CTTGGTGAATCAGGTTGTTG+GGG | 0.553448 | 1_1:-27262326 | Msa0016480:intron |
| CGAGATGTTAAACGTAGAGA+AGG | 0.558577 | 1_1:+27263443 | None:intergenic |
| CCAGAGTGAACCTAAAACAA+GGG | 0.580786 | 1_1:+27261090 | None:intergenic |
| CTGGATTAGATTACCAGAAG+AGG | 0.584920 | 1_1:-27261071 | Msa0016480:three_prime_UTR |
| TCTAGTTAGGAGCATACAGA+TGG | 0.588325 | 1_1:-27261313 | Msa0016480:three_prime_UTR |
| TGGTACTTGTCATATGCCAC+AGG | 0.589674 | 1_1:+27262120 | None:intergenic |
| TAGTTGCTGATGTGTTGCTA+TGG | 0.599011 | 1_1:-27263150 | Msa0016480:CDS |
| AGAGCCGAGAGCGTGATGAA+CGG | 0.602600 | 1_1:+27263353 | None:intergenic |
| TCCAGAGTGAACCTAAAACA+AGG | 0.605162 | 1_1:+27261089 | None:intergenic |
| AGAAGATTCATGTGGTACAT+GGG | 0.608693 | 1_1:-27262083 | Msa0016480:CDS |
| TCATATAAAGCATCTTCCAA+TGG | 0.609484 | 1_1:+27261136 | None:intergenic |
| TGGATTAGATTACCAGAAGA+GGG | 0.618387 | 1_1:-27261070 | Msa0016480:three_prime_UTR |
| TGATTTCTGCAACCACATTG+TGG | 0.618418 | 1_1:-27263099 | Msa0016480:CDS |
| CTATGGAAGAATTGGCGTGG+AGG | 0.619260 | 1_1:-27263133 | Msa0016480:CDS |
| GGTTCTACCATGGCGATTGG+GGG | 0.634871 | 1_1:+27263387 | None:intergenic |
| GAAATCTCCAGATCAGGCAG+AGG | 0.635921 | 1_1:+27262554 | None:intergenic |
| TGTGGCATATGACAAGTACC+AGG | 0.646519 | 1_1:-27262118 | Msa0016480:CDS |
| TGATGAACGGAAATTCGTTG+AGG | 0.664061 | 1_1:+27263366 | None:intergenic |
| ATTAGATTACCAGAAGAGGG+TGG | 0.667915 | 1_1:-27261067 | Msa0016480:three_prime_UTR |
| TTGCTATGGAAGAATTGGCG+TGG | 0.691195 | 1_1:-27263136 | Msa0016480:CDS |
| TGTTAGAGTTACGGTTACGG+TGG | 0.704861 | 1_1:+27263471 | None:intergenic |
| AATTCGTTGAGGTTCTACCA+TGG | 0.708123 | 1_1:+27263377 | None:intergenic |
| AATTGATGAGAAGATTCATG+TGG | 0.715992 | 1_1:-27262091 | Msa0016480:CDS |
| CTCGAACAGATACCACAATG+TGG | 0.752392 | 1_1:+27263087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGATTAATTATAAATTT+AGG | + | chr1_1:27261513-27261532 | None:intergenic | 10.0% |
| !! | AATAAAATAATTTCAATCAT+AGG | + | chr1_1:27261826-27261845 | None:intergenic | 10.0% |
| !!! | ATATTTTTACTTTTTCAAAT+AGG | - | chr1_1:27263533-27263552 | Msa0016480:five_prime_UTR | 10.0% |
| !! | TTCTATCTTGAAAACAAAAT+CGG | - | chr1_1:27261218-27261237 | Msa0016480:three_prime_UTR | 20.0% |
| !!! | TATAATTAATCTTGTTTGAG+AGG | - | chr1_1:27261518-27261537 | Msa0016480:intron | 20.0% |
| !!! | ATAATTAATCTTGTTTGAGA+GGG | - | chr1_1:27261519-27261538 | Msa0016480:intron | 20.0% |
| !! | TTGTTGACAATATCTTATAT+TGG | - | chr1_1:27262121-27262140 | Msa0016480:CDS | 20.0% |
| !!! | TACATAATATTTTGTTCCTA+CGG | + | chr1_1:27262718-27262737 | None:intergenic | 20.0% |
| !! | AACTGAAATAACTAGTTATT+AGG | - | chr1_1:27262795-27262814 | Msa0016480:intron | 20.0% |
| !!! | ATTACTGATTAAACAATTTC+AGG | + | chr1_1:27263496-27263515 | None:intergenic | 20.0% |
| ! | TGTTGAAGATTGAAAGAAAT+CGG | + | chr1_1:27261131-27261150 | None:intergenic | 25.0% |
| ! | AGTGTAAGTAAGAAAACTAA+AGG | + | chr1_1:27261157-27261176 | None:intergenic | 25.0% |
| ! | CATGAATCGAATTATAAACA+AGG | + | chr1_1:27261190-27261209 | None:intergenic | 25.0% |
| ! | AAACGATAAGAAATTGTAAC+CGG | + | chr1_1:27261365-27261384 | None:intergenic | 25.0% |
| ! | TTTCTAATGTACTGCAAATT+TGG | - | chr1_1:27261911-27261930 | Msa0016480:intron | 25.0% |
| ! | TTTGTTTATGTTGAGTTCTA+TGG | - | chr1_1:27262026-27262045 | Msa0016480:CDS | 25.0% |
| ! | ATTTCTGTAATGATCATTTC+AGG | - | chr1_1:27262257-27262276 | Msa0016480:intron | 25.0% |
| ! | GAATCATAGAAAAGTTTAAG+AGG | - | chr1_1:27262817-27262836 | Msa0016480:intron | 25.0% |
| ! | TATTAAAGGTAACTGGAAAT+TGG | + | chr1_1:27262936-27262955 | None:intergenic | 25.0% |
| ! | TTGGTATTATTAAAGGTAAC+TGG | + | chr1_1:27262943-27262962 | None:intergenic | 25.0% |
| ! | GTTGCATTTGGTATTATTAA+AGG | + | chr1_1:27262950-27262969 | None:intergenic | 25.0% |
| ! | TATAAAACAACTGTTGCATT+TGG | + | chr1_1:27262962-27262981 | None:intergenic | 25.0% |
| !!! | CAACAGTTGTTTTATATAGA+TGG | - | chr1_1:27262966-27262985 | Msa0016480:intron | 25.0% |
| !! | GAGATTGTATTTTCATTCTT+AGG | - | chr1_1:27263031-27263050 | Msa0016480:CDS | 25.0% |
| ! | TCACTAATCATGAGTTAAAA+CGG | + | chr1_1:27263189-27263208 | None:intergenic | 25.0% |
| !!! | ATTGGTTTACTTTTTTAGGA+TGG | - | chr1_1:27263411-27263430 | Msa0016480:five_prime_UTR | 25.0% |
| ! | AAAAATATTGCAGTATACAG+TGG | + | chr1_1:27263521-27263540 | None:intergenic | 25.0% |
| !! | TTGTTGTGATTCTGTTTCTA+TGG | - | chr1_1:27261407-27261426 | Msa0016480:intron | 30.0% |
| !! | TGTTGTGATTCTGTTTCTAT+GGG | - | chr1_1:27261408-27261427 | Msa0016480:intron | 30.0% |
| AAGCTGCTAATCTTCTTAAT+AGG | - | chr1_1:27261434-27261453 | Msa0016480:intron | 30.0% | |
| CTTGACTGTTAGATAGAATT+AGG | - | chr1_1:27261588-27261607 | Msa0016480:intron | 30.0% | |
| CACATGATATAGCAATTAAC+AGG | - | chr1_1:27261956-27261975 | Msa0016480:intron | 30.0% | |
| TACATATGTAGATCAAAGTC+AGG | + | chr1_1:27262162-27262181 | None:intergenic | 30.0% | |
| AATTGATGAGAAGATTCATG+TGG | - | chr1_1:27262331-27262350 | Msa0016480:intron | 30.0% | |
| ! | TTTTCTTTGCTTGAACGATT+TGG | + | chr1_1:27262416-27262435 | None:intergenic | 30.0% |
| AAACACACATGTAAAGGAAT+AGG | + | chr1_1:27262469-27262488 | None:intergenic | 30.0% | |
| ACAAACTGCTTGTAAATGTA+AGG | + | chr1_1:27262526-27262545 | None:intergenic | 30.0% | |
| GTGTGTTTATGGGATATAAA+CGG | - | chr1_1:27262858-27262877 | Msa0016480:intron | 30.0% | |
| ! | ATGTCTACTTTGCATTTTTC+TGG | - | chr1_1:27262892-27262911 | Msa0016480:intron | 30.0% |
| !!! | TGAGGTTTTTTTCGTTTTCT+TGG | - | chr1_1:27263153-27263172 | Msa0016480:intron | 30.0% |
| !!! | GAGGTTTTTTTCGTTTTCTT+GGG | - | chr1_1:27263154-27263173 | Msa0016480:intron | 30.0% |
| ! | TCATATAAAGCATCTTCCAA+TGG | + | chr1_1:27263289-27263308 | None:intergenic | 30.0% |
| !!! | GAAATAGATACCCTTGTTTT+AGG | - | chr1_1:27263322-27263341 | Msa0016480:intron | 30.0% |
| !!! | GCACATTGGTTTACTTTTTT+AGG | - | chr1_1:27263407-27263426 | Msa0016480:five_prime_UTR | 30.0% |
| !!! | ACTTTTTTAGGATGGTAGTA+TGG | - | chr1_1:27263419-27263438 | Msa0016480:five_prime_UTR | 30.0% |
| !!! | CAATTGGATTTTGATTCAGT+TGG | - | chr1_1:27263456-27263475 | Msa0016480:five_prime_UTR | 30.0% |
| !!! | ACTTTTTCAAATAGGAATGC+TGG | - | chr1_1:27263541-27263560 | Msa0016480:five_prime_UTR | 30.0% |
| TGCTTGCTTACAAAAGGAAA+CGG | + | chr1_1:27260887-27260906 | None:intergenic | 35.0% | |
| GAAGATTGAAAGAAATCGGA+AGG | + | chr1_1:27261127-27261146 | None:intergenic | 35.0% | |
| ! | ATGTGTTGCTATGGAAGAAT+TGG | - | chr1_1:27261281-27261300 | Msa0016480:three_prime_UTR | 35.0% |
| ACTGCAAATTTGGCTAAATC+AGG | - | chr1_1:27261921-27261940 | Msa0016480:intron | 35.0% | |
| ! | GAATTTGTTTCTTTGTGCAC+AGG | - | chr1_1:27261978-27261997 | Msa0016480:intron | 35.0% |
| GACACTTGTTTGTATGAACT+TGG | - | chr1_1:27262078-27262097 | Msa0016480:CDS | 35.0% | |
| ! | TTGTATGAACTTGGTGAATC+AGG | - | chr1_1:27262087-27262106 | Msa0016480:CDS | 35.0% |
| AGAAGATTCATGTGGTACAT+GGG | - | chr1_1:27262339-27262358 | Msa0016480:intron | 35.0% | |
| ! | TGCGAATCTTTTGATACTGT+GGG | + | chr1_1:27262373-27262392 | None:intergenic | 35.0% |
| ! | CAAAGAAAAGAAAGTGCAGT+AGG | - | chr1_1:27262427-27262446 | Msa0016480:intron | 35.0% |
| AGCATCAAACACACATGTAA+AGG | + | chr1_1:27262475-27262494 | None:intergenic | 35.0% | |
| CTAAAATAAGATCCCGTAGA+TGG | + | chr1_1:27262584-27262603 | None:intergenic | 35.0% | |
| TCATACAAGGTAGATATCTG+TGG | - | chr1_1:27262626-27262645 | Msa0016480:intron | 35.0% | |
| AAAGATGTCACGTGATAACA+CGG | + | chr1_1:27262670-27262689 | None:intergenic | 35.0% | |
| ! | TGCATAAAGGGTGTGTTTAT+GGG | - | chr1_1:27262848-27262867 | Msa0016480:intron | 35.0% |
| TCTGCACACTGAATTTCAAA+TGG | + | chr1_1:27263076-27263095 | None:intergenic | 35.0% | |
| ! | TTTGAAATTCAGTGTGCAGA+TGG | - | chr1_1:27263076-27263095 | Msa0016480:CDS | 35.0% |
| TGGTTAACTGAAGTCTAGTT+AGG | - | chr1_1:27263096-27263115 | Msa0016480:CDS | 35.0% | |
| ! | ATCAAAGCTCTTTGTCGATT+TGG | + | chr1_1:27263231-27263250 | None:intergenic | 35.0% |
| ! | TGATTTTCAGTGTACTCCAT+TGG | - | chr1_1:27263270-27263289 | Msa0016480:intron | 35.0% |
| ! | TGGATTAGATTACCAGAAGA+GGG | - | chr1_1:27263352-27263371 | Msa0016480:CDS | 35.0% |
| CATCACTGCTTGCTTACAAA+AGG | + | chr1_1:27260893-27260912 | None:intergenic | 40.0% | |
| !!! | GTGGCTATTTCTTTCGGTTT+TGG | + | chr1_1:27260935-27260954 | None:intergenic | 40.0% |
| !! | GTTACGGTGGCTATTTCTTT+CGG | + | chr1_1:27260941-27260960 | None:intergenic | 40.0% |
| TGCTGTTAGAGTTACGGTTA+CGG | + | chr1_1:27260957-27260976 | None:intergenic | 40.0% | |
| !! | AAGGAGTGCTGTTAGAGTTA+CGG | + | chr1_1:27260963-27260982 | None:intergenic | 40.0% |
| CGAGATGTTAAACGTAGAGA+AGG | + | chr1_1:27260982-27261001 | None:intergenic | 40.0% | |
| AATTCGTTGAGGTTCTACCA+TGG | + | chr1_1:27261048-27261067 | None:intergenic | 40.0% | |
| TGATGAACGGAAATTCGTTG+AGG | + | chr1_1:27261059-27261078 | None:intergenic | 40.0% | |
| ! | TAGTTGCTGATGTGTTGCTA+TGG | - | chr1_1:27261272-27261291 | Msa0016480:three_prime_UTR | 40.0% |
| TGATTTCTGCAACCACATTG+TGG | - | chr1_1:27261323-27261342 | Msa0016480:three_prime_UTR | 40.0% | |
| ! | TTGGCTAAATCAGGCTTTGT+CGG | - | chr1_1:27261930-27261949 | Msa0016480:intron | 40.0% |
| ! | AACTTGGTGAATCAGGTTGT+TGG | - | chr1_1:27262094-27262113 | Msa0016480:CDS | 40.0% |
| ! | ACTTGGTGAATCAGGTTGTT+GGG | - | chr1_1:27262095-27262114 | Msa0016480:CDS | 40.0% |
| GAAATTCTCTCTGCGTAAGT+TGG | - | chr1_1:27262227-27262246 | Msa0016480:intron | 40.0% | |
| TCTTCTCATCAATTCGATCC+TGG | + | chr1_1:27262325-27262344 | None:intergenic | 40.0% | |
| GAGAAGATTCATGTGGTACA+TGG | - | chr1_1:27262338-27262357 | Msa0016480:intron | 40.0% | |
| ! | CTGCGAATCTTTTGATACTG+TGG | + | chr1_1:27262374-27262393 | None:intergenic | 40.0% |
| CACAGTATCAAAAGATTCGC+AGG | - | chr1_1:27262372-27262391 | Msa0016480:intron | 40.0% | |
| GTCCATAGATGTACCATCTA+CGG | - | chr1_1:27262568-27262587 | Msa0016480:intron | 40.0% | |
| TCCATAGATGTACCATCTAC+GGG | - | chr1_1:27262569-27262588 | Msa0016480:intron | 40.0% | |
| ! | TGTGGTCTAGAACTGTCATA+GGG | - | chr1_1:27262644-27262663 | Msa0016480:intron | 40.0% |
| ! | TAGCTTGTGACAAGTCATCA+CGG | - | chr1_1:27262756-27262775 | Msa0016480:intron | 40.0% |
| ! | CTGCATAAAGGGTGTGTTTA+TGG | - | chr1_1:27262847-27262866 | Msa0016480:intron | 40.0% |
| ! | TCTAGTTAGGAGCATACAGA+TGG | - | chr1_1:27263109-27263128 | Msa0016480:CDS | 40.0% |
| ! | CGCAACAAATGGAGTATTTG+AGG | - | chr1_1:27263135-27263154 | Msa0016480:CDS | 40.0% |
| CCAGAGTGAACCTAAAACAA+GGG | + | chr1_1:27263335-27263354 | None:intergenic | 40.0% | |
| TCCAGAGTGAACCTAAAACA+AGG | + | chr1_1:27263336-27263355 | None:intergenic | 40.0% | |
| ! | CTGGATTAGATTACCAGAAG+AGG | - | chr1_1:27263351-27263370 | Msa0016480:CDS | 40.0% |
| ATTAGATTACCAGAAGAGGG+TGG | - | chr1_1:27263355-27263374 | Msa0016480:CDS | 40.0% | |
| ACTCATGAGAACTTGCACAT+TGG | - | chr1_1:27263393-27263412 | Msa0016480:exon | 40.0% | |
| ! | TTTAGGATGGTAGTATGGCA+TGG | - | chr1_1:27263424-27263443 | Msa0016480:five_prime_UTR | 40.0% |
| ! | TGGTAGTATGGCATGGATTT+TGG | - | chr1_1:27263431-27263450 | Msa0016480:five_prime_UTR | 40.0% |
| !!! | GGCATGGATTTTGGTTCAAT+TGG | - | chr1_1:27263440-27263459 | Msa0016480:five_prime_UTR | 40.0% |
| TTCAAATAGGAATGCTGGTC+TGG | - | chr1_1:27263546-27263565 | Msa0016480:five_prime_UTR | 40.0% | |
| TGTTAGAGTTACGGTTACGG+TGG | + | chr1_1:27260954-27260973 | None:intergenic | 45.0% | |
| ATTTCCGTTCATCACGCTCT+CGG | - | chr1_1:27261065-27261084 | Msa0016480:three_prime_UTR | 45.0% | |
| TTGCTATGGAAGAATTGGCG+TGG | - | chr1_1:27261286-27261305 | Msa0016480:three_prime_UTR | 45.0% | |
| CTCGAACAGATACCACAATG+TGG | + | chr1_1:27261338-27261357 | None:intergenic | 45.0% | |
| TCTGCCTGATCTGGAGATTT+CGG | - | chr1_1:27261870-27261889 | Msa0016480:intron | 45.0% | |
| TTCTCCGAAATCTCCAGATC+AGG | + | chr1_1:27261877-27261896 | None:intergenic | 45.0% | |
| ! | CTTGGTGAATCAGGTTGTTG+GGG | - | chr1_1:27262096-27262115 | Msa0016480:CDS | 45.0% |
| !! | TCTTAGCTTGTCTCTTCCTG+TGG | - | chr1_1:27262286-27262305 | Msa0016480:CDS | 45.0% |
| TGGTACTTGTCATATGCCAC+AGG | + | chr1_1:27262305-27262324 | None:intergenic | 45.0% | |
| TGTGGCATATGACAAGTACC+AGG | - | chr1_1:27262304-27262323 | Msa0016480:CDS | 45.0% | |
| TCCCGTAGATGGTACATCTA+TGG | + | chr1_1:27262573-27262592 | None:intergenic | 45.0% | |
| !! | CTGTAGAGAGGCATCATACA+AGG | - | chr1_1:27262613-27262632 | Msa0016480:intron | 45.0% |
| ! | CTGTGGTCTAGAACTGTCAT+AGG | - | chr1_1:27262643-27262662 | Msa0016480:intron | 45.0% |
| ! | GACAGTCACTAGTTTACCGT+AGG | - | chr1_1:27262699-27262718 | Msa0016480:intron | 45.0% |
| ACAGATGGATGCGCAACAAA+TGG | - | chr1_1:27263124-27263143 | Msa0016480:CDS | 45.0% | |
| !!! | CCCTTGTTTTAGGTTCACTC+TGG | - | chr1_1:27263332-27263351 | Msa0016480:intron | 45.0% |
| ! | CTTTCTTTTCCACCCTCTTC+TGG | + | chr1_1:27263367-27263386 | None:intergenic | 45.0% |
| CAGAAGAGGGTGGAAAAGAA+AGG | - | chr1_1:27263365-27263384 | Msa0016480:CDS | 45.0% | |
| !!! | TTTTTATTCTAATAATAATT+TGG | - | chr1_1:27262989-27263008 | Msa0016480:CDS | 5.0% |
| ! | ATGGCGATTGGGGGATTTTG+CGG | + | chr1_1:27261029-27261048 | None:intergenic | 50.0% |
| AGGTTCTACCATGGCGATTG+GGG | + | chr1_1:27261039-27261058 | None:intergenic | 50.0% | |
| GAGGTTCTACCATGGCGATT+GGG | + | chr1_1:27261040-27261059 | None:intergenic | 50.0% | |
| TGAGGTTCTACCATGGCGAT+TGG | + | chr1_1:27261041-27261060 | None:intergenic | 50.0% | |
| ATCGGAAGGAGAGAGAGAGA+GGG | + | chr1_1:27261113-27261132 | None:intergenic | 50.0% | |
| AATCGGAAGGAGAGAGAGAG+AGG | + | chr1_1:27261114-27261133 | None:intergenic | 50.0% | |
| CTATGGAAGAATTGGCGTGG+AGG | - | chr1_1:27261289-27261308 | Msa0016480:three_prime_UTR | 50.0% | |
| GAAATCTCCAGATCAGGCAG+AGG | + | chr1_1:27261871-27261890 | None:intergenic | 50.0% | |
| !! | TAGTTCCGCTTGCTGTAGAG+AGG | - | chr1_1:27262601-27262620 | Msa0016480:intron | 50.0% |
| TGATGCCTCTCTACAGCAAG+CGG | + | chr1_1:27262609-27262628 | None:intergenic | 50.0% | |
| CACACCCTTTATGCAGCTCT+CGG | + | chr1_1:27262843-27262862 | None:intergenic | 50.0% | |
| TGGTTGCAGAGTCGCGAGTA+AGG | + | chr1_1:27261006-27261025 | None:intergenic | 55.0% | |
| GCAAAATCCCCCAATCGCCA+TGG | - | chr1_1:27261028-27261047 | Msa0016480:three_prime_UTR | 55.0% | |
| GGTTCTACCATGGCGATTGG+GGG | + | chr1_1:27261038-27261057 | None:intergenic | 55.0% | |
| ! | AGAGCCGAGAGCGTGATGAA+CGG | + | chr1_1:27261072-27261091 | None:intergenic | 55.0% |
| TGGTATCTGTTCGAGCGAGC+CGG | - | chr1_1:27261343-27261362 | Msa0016480:intron | 55.0% | |
| AGATCAGGCAGAGGAGGAAG+TGG | + | chr1_1:27261862-27261881 | None:intergenic | 55.0% | |
| ACTTCCTCCTCTGCCTGATC+TGG | - | chr1_1:27261861-27261880 | Msa0016480:intron | 55.0% | |
| ATCTCCAGATCAGGCAGAGG+AGG | + | chr1_1:27261868-27261887 | None:intergenic | 55.0% | |
| AGAGGCCGAGAGCTGCATAA+AGG | - | chr1_1:27262835-27262854 | Msa0016480:intron | 55.0% | |
| GAGGCCGAGAGCTGCATAAA+GGG | - | chr1_1:27262836-27262855 | Msa0016480:intron | 55.0% | |
| ! | GCGATTGGGGGATTTTGCGG+TGG | + | chr1_1:27261026-27261045 | None:intergenic | 60.0% |
| GTTCATCACGCTCTCGGCTC+TGG | - | chr1_1:27261071-27261090 | Msa0016480:three_prime_UTR | 60.0% | |
| ! | CACGCTCTCGGCTCTGGCTT+AGG | - | chr1_1:27261077-27261096 | Msa0016480:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27260851 | 27263593 | 27260851 | ID=Msa0016480;Name=Msa0016480 |
| chr1_1 | mRNA | 27260851 | 27263593 | 27260851 | ID=Msa0016480-mRNA-1;Parent=Msa0016480;Name=Msa0016480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=196|1|1|1|0.66|0.71|7|486|204 |
| chr1_1 | exon | 27260851 | 27260966 | 27260851 | ID=Msa0016480-mRNA-1:exon:9210;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27260987 | 27261356 | 27260987 | ID=Msa0016480-mRNA-1:exon:9209;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27261996 | 27262165 | 27261996 | ID=Msa0016480-mRNA-1:exon:9208;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27262266 | 27262335 | 27262266 | ID=Msa0016480-mRNA-1:exon:9207;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27262445 | 27262586 | 27262445 | ID=Msa0016480-mRNA-1:exon:9206;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27262989 | 27263169 | 27262989 | ID=Msa0016480-mRNA-1:exon:9205;Parent=Msa0016480-mRNA-1 |
| chr1_1 | exon | 27263346 | 27263593 | 27263346 | ID=Msa0016480-mRNA-1:exon:9204;Parent=Msa0016480-mRNA-1 |
| chr1_1 | five_prime_UTR | 27263398 | 27263593 | 27263398 | ID=Msa0016480-mRNA-1:five_prime_utr;Parent=Msa0016480-mRNA-1 |
| chr1_1 | CDS | 27263346 | 27263397 | 27263346 | ID=Msa0016480-mRNA-1:cds;Parent=Msa0016480-mRNA-1 |
| chr1_1 | CDS | 27262989 | 27263169 | 27262989 | ID=Msa0016480-mRNA-1:cds;Parent=Msa0016480-mRNA-1 |
| chr1_1 | CDS | 27262445 | 27262586 | 27262445 | ID=Msa0016480-mRNA-1:cds;Parent=Msa0016480-mRNA-1 |
| chr1_1 | CDS | 27262266 | 27262335 | 27262266 | ID=Msa0016480-mRNA-1:cds;Parent=Msa0016480-mRNA-1 |
| chr1_1 | CDS | 27261996 | 27262165 | 27261996 | ID=Msa0016480-mRNA-1:cds;Parent=Msa0016480-mRNA-1 |
| chr1_1 | three_prime_UTR | 27260987 | 27261356 | 27260987 | ID=Msa0016480-mRNA-1:three_prime_utr;Parent=Msa0016480-mRNA-1 |
| chr1_1 | three_prime_UTR | 27260851 | 27260966 | 27260851 | ID=Msa0016480-mRNA-1:three_prime_utr;Parent=Msa0016480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
