Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612840 | XP_013457066.1 | 97.386 | 306 | 7 | 1 | 1 | 305 | 1 | 306 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612840 | sp|Q9SKU1|CLC1_ARATH | 52.303 | 304 | 119 | 8 | 21 | 301 | 22 | 322 | 4.77e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006470 | Msa0612840 | -0.800343 | 1.506631e-48 | -8.615850e-47 |
| Msa0016480 | Msa0612840 | 0.808862 | 2.513678e-50 | -8.615850e-47 |
| Msa0016500 | Msa0612840 | 0.844175 | 8.896013e-59 | -8.615850e-47 |
| Msa0094940 | Msa0612840 | 0.824181 | 9.275867e-54 | -8.615850e-47 |
| Msa0612840 | Msa0616560 | 0.817731 | 2.831784e-52 | -8.615850e-47 |
| Msa0612840 | Msa0621170 | 0.838991 | 2.069268e-57 | -8.615850e-47 |
| Msa0612840 | Msa0641020 | -0.803010 | 4.274293e-49 | -8.615850e-47 |
| Msa0612840 | Msa0679560 | -0.820581 | 6.360454e-53 | -8.615850e-47 |
| Msa0612840 | Msa0681090 | 0.800452 | 1.432014e-48 | -8.615850e-47 |
| Msa0612840 | Msa0723430 | -0.802003 | 6.894118e-49 | -8.615850e-47 |
| Msa0612840 | Msa0740580 | 0.824715 | 6.947017e-54 | -8.615850e-47 |
| Msa0612840 | Msa0861150 | 0.812234 | 4.697764e-51 | -8.615850e-47 |
| Msa0612840 | Msa0886660 | -0.818804 | 1.619418e-52 | -8.615850e-47 |
| Msa0612840 | Msa0912230 | -0.848018 | 8.007210e-60 | -8.615850e-47 |
| Msa0612840 | Msa0912470 | -0.802327 | 5.912058e-49 | -8.615850e-47 |
| Msa0612840 | Msa0968320 | 0.811835 | 5.740013e-51 | -8.615850e-47 |
| Msa0612840 | Msa0996830 | 0.828399 | 9.187075e-55 | -8.615850e-47 |
| Msa0612840 | Msa1001210 | -0.826073 | 3.313757e-54 | -8.615850e-47 |
| Msa0612840 | Msa1046140 | 0.814433 | 1.544646e-51 | -8.615850e-47 |
| Msa0612840 | Msa1068310 | 0.807246 | 5.550121e-50 | -8.615850e-47 |
| Msa0612840 | Msa1069840 | 0.814529 | 1.471148e-51 | -8.615850e-47 |
| Msa0612840 | Msa1081710 | -0.805132 | 1.547333e-49 | -8.615850e-47 |
| Msa0612840 | Msa1119970 | 0.828034 | 1.125153e-54 | -8.615850e-47 |
| Msa0612840 | Msa1125530 | -0.812780 | 3.568730e-51 | -8.615850e-47 |
| Msa0612840 | Msa1209560 | -0.827996 | 1.148948e-54 | -8.615850e-47 |
| Msa0612840 | Msa1221210 | 0.804248 | 2.366694e-49 | -8.615850e-47 |
| Msa0612840 | Msa1246040 | -0.816148 | 6.420151e-52 | -8.615850e-47 |
| Msa0612840 | Msa1257870 | 0.831530 | 1.584419e-55 | -8.615850e-47 |
| Msa0612840 | Msa1328830 | 0.822190 | 2.704759e-53 | -8.615850e-47 |
| Msa0612840 | Msa1330530 | -0.807045 | 6.123903e-50 | -8.615850e-47 |
| Msa0612840 | Msa1437530 | 0.826539 | 2.566804e-54 | -8.615850e-47 |
| Msa0127810 | Msa0612840 | 0.809350 | 1.975804e-50 | -8.615850e-47 |
| Msa0226620 | Msa0612840 | 0.811025 | 8.605791e-51 | -8.615850e-47 |
| Msa0377600 | Msa0612840 | 0.843738 | 1.164996e-58 | -8.615850e-47 |
| Msa0470230 | Msa0612840 | 0.835191 | 1.936926e-56 | -8.615850e-47 |
| Msa0260230 | Msa0612840 | 0.832368 | 9.840544e-56 | -8.615850e-47 |
| Msa0260270 | Msa0612840 | 0.829867 | 4.047588e-55 | -8.615850e-47 |
| Msa0277000 | Msa0612840 | 0.819634 | 1.047527e-52 | -8.615850e-47 |
| Msa0280950 | Msa0612840 | 0.819611 | 1.060359e-52 | -8.615850e-47 |
| Msa0304270 | Msa0612840 | 0.871469 | 6.676350e-67 | -8.615850e-47 |
| Msa0304310 | Msa0612840 | 0.848633 | 5.411068e-60 | -8.615850e-47 |
| Msa0334170 | Msa0612840 | -0.824166 | 9.352850e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612840 | MtrunA17_Chr4g0047571 | 97.386 | 306 | 7 | 1 | 1 | 305 | 1 | 306 | 0.0 | 609 |
| Msa0612840 | MtrunA17_Chr2g0281981 | 68.771 | 301 | 82 | 5 | 9 | 305 | 21 | 313 | 1.72e-123 | 355 |
| Msa0612840 | MtrunA17_Chr8g0387061 | 51.084 | 323 | 119 | 8 | 14 | 305 | 32 | 346 | 1.14e-73 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612840 | AT2G20760.1 | 52.303 | 304 | 119 | 8 | 21 | 301 | 22 | 322 | 4.85e-72 | 226 |
| Msa0612840 | AT2G40060.1 | 55.760 | 217 | 85 | 4 | 28 | 237 | 16 | 228 | 1.34e-66 | 209 |
| Msa0612840 | AT3G51890.1 | 62.264 | 159 | 57 | 1 | 87 | 245 | 85 | 240 | 5.54e-59 | 190 |
Find 110 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCTTTGGTTGTGATTC+AGG | 0.112857 | 4_2:+61347317 | None:intergenic |
| GTTTGCCTGGCTTTGGGCCT+TGG | 0.150519 | 4_2:+61347519 | None:intergenic |
| CGGAGGAAGGTAACGTTCTT+AGG | 0.196876 | 4_2:-61349838 | Msa0612840:CDS |
| CGGTGGGTTTGCCTGGCTTT+GGG | 0.248540 | 4_2:+61347513 | None:intergenic |
| GCAAACCCACCGACCTTTCT+AGG | 0.257216 | 4_2:-61347502 | Msa0612840:CDS |
| TCGGTGGGTTTGCCTGGCTT+TGG | 0.260717 | 4_2:+61347512 | None:intergenic |
| GGCGATGACGACAACTATTC+TGG | 0.264153 | 4_2:-61350088 | Msa0612840:CDS |
| CCGAATACATCCGGAGATTC+CGG | 0.326239 | 4_2:+61350004 | None:intergenic |
| TTTGTGAAAATTCTCTTGAT+TGG | 0.330165 | 4_2:+61347658 | None:intergenic |
| TGAATCTACAGTACCGTTAT+TGG | 0.331003 | 4_2:+61347292 | None:intergenic |
| GGTGCTGATCCATTTGGTTT+AGG | 0.333375 | 4_2:+61347350 | None:intergenic |
| CCAGTGCATGTGATGGAAAA+TGG | 0.335341 | 4_2:-61349938 | Msa0612840:CDS |
| TGAGAAGAAAAGAGGCAAAA+AGG | 0.365407 | 4_2:-61347573 | Msa0612840:CDS |
| AAAATTACTGGAAAGCAATT+GGG | 0.366531 | 4_2:-61347625 | Msa0612840:CDS |
| TGCCTGGCTTTGGGCCTTGG+AGG | 0.380338 | 4_2:+61347522 | None:intergenic |
| TTCCCTTTGGAGTCTTTAGC+AGG | 0.387984 | 4_2:+61347413 | None:intergenic |
| CCGTTATTGGCAGCATCCTT+TGG | 0.394987 | 4_2:+61347305 | None:intergenic |
| GGTTTAGGTGCTGATCCATT+TGG | 0.396493 | 4_2:+61347365 | None:intergenic |
| GAAAGGTCGGTGGGTTTGCC+TGG | 0.402706 | 4_2:+61347506 | None:intergenic |
| CCGGAATCTCCGGATGTATT+CGG | 0.406444 | 4_2:-61350004 | Msa0612840:CDS |
| GCTGCTGTTGTGTGATCTAC+AGG | 0.409676 | 4_2:+61350028 | None:intergenic |
| ATTATTGTCTATTATGACCT+TGG | 0.418043 | 4_2:-61347079 | Msa0612840:three_prime_UTR |
| ACTTCCGGTGCTGATCCATT+TGG | 0.420411 | 4_2:+61347344 | None:intergenic |
| AACTAGACGAGAAGGAGAAA+AGG | 0.420773 | 4_2:-61347903 | Msa0612840:CDS |
| AACAGCAGCGCCGGAATCTC+CGG | 0.421407 | 4_2:-61350014 | Msa0612840:CDS |
| TTGGAGTCTTTAGCAGGTGC+AGG | 0.422981 | 4_2:+61347419 | None:intergenic |
| TGTGATTCAGGTGCAACTTC+CGG | 0.424313 | 4_2:+61347329 | None:intergenic |
| CTCAATGTTGGCAACCTCAC+GGG | 0.426203 | 4_2:+61347592 | None:intergenic |
| GCAGACTGCTCCTCAGTGGC+AGG | 0.431231 | 4_2:+61347254 | None:intergenic |
| ATGGAAAATGGAAACGGTTA+CGG | 0.438031 | 4_2:-61349926 | Msa0612840:CDS |
| GCTTCCTCCTCCTGCTGAGA+TGG | 0.448243 | 4_2:-61349864 | Msa0612840:CDS |
| GTTTGTGGAACAGTTATACT+TGG | 0.453267 | 4_2:-61347681 | Msa0612840:intron |
| GGTGAAGTGGTCTTCGTTGA+CGG | 0.458970 | 4_2:+61350114 | None:intergenic |
| ACAAGGTTCAAAACAGAGAA+AGG | 0.459770 | 4_2:-61347792 | Msa0612840:CDS |
| AATGAGATTAAAGATTATTG+AGG | 0.464614 | 4_2:-61347872 | Msa0612840:CDS |
| GAAACAGCAACTAAACCAAA+TGG | 0.475248 | 4_2:-61347380 | Msa0612840:CDS |
| AAGGTCATAATAGACAATAA+TGG | 0.479197 | 4_2:+61347081 | None:intergenic |
| CTAAGAACGTTACCTTCCTC+CGG | 0.484104 | 4_2:+61349839 | None:intergenic |
| AGGAGGAAGCACCGGACCAT+CGG | 0.488490 | 4_2:+61349877 | None:intergenic |
| GGATCAGCACCTAAACCAAA+TGG | 0.488856 | 4_2:-61347359 | Msa0612840:CDS |
| CATCACATGCACTGGTTCGA+AGG | 0.488969 | 4_2:+61349946 | None:intergenic |
| GTGATCTACAGGGACATCTT+CGG | 0.492594 | 4_2:+61350039 | None:intergenic |
| AAGTGGGTTTCTATGAGAAA+AGG | 0.493819 | 4_2:-61347834 | Msa0612840:CDS |
| TCCTCCGGCTCCATCTCAGC+AGG | 0.495243 | 4_2:+61349854 | None:intergenic |
| GGAGGAAGGTAACGTTCTTA+GGG | 0.497743 | 4_2:-61349837 | Msa0612840:CDS |
| TCCTCCTGCTGAGATGGAGC+CGG | 0.501036 | 4_2:-61349858 | Msa0612840:CDS |
| GTGGCAGGAGCTTCTTTCTG+AGG | 0.503664 | 4_2:+61347269 | None:intergenic |
| ACTAGACGAGAAGGAGAAAA+GGG | 0.504571 | 4_2:-61347902 | Msa0612840:CDS |
| ATGTAACATTTGAATTTCCA+AGG | 0.506294 | 4_2:+61347062 | None:intergenic |
| GTCCTCCAAGGCCCAAAGCC+AGG | 0.509150 | 4_2:-61347524 | Msa0612840:CDS |
| TTAGCAGGTGCAGGTGGAGG+AGG | 0.510354 | 4_2:+61347428 | None:intergenic |
| CCAAAGGATGCTGCCAATAA+CGG | 0.510873 | 4_2:-61347305 | Msa0612840:CDS |
| ATATCTGCCGCATCCTAGAA+AGG | 0.513686 | 4_2:+61347489 | None:intergenic |
| TGTATTCGGATTCAGCGATC+AGG | 0.515580 | 4_2:-61349990 | Msa0612840:CDS |
| CGTCATCGCCGGCGGTGAAG+TGG | 0.522107 | 4_2:+61350101 | None:intergenic |
| GGCTCCATCTCAGCAGGAGG+AGG | 0.522435 | 4_2:+61349860 | None:intergenic |
| TCTTTAGCAGGTGCAGGTGG+AGG | 0.524857 | 4_2:+61347425 | None:intergenic |
| AGAATAGTTGTCGTCATCGC+CGG | 0.532066 | 4_2:+61350090 | None:intergenic |
| GACGACAACTATTCTGGATA+CGG | 0.534120 | 4_2:-61350082 | Msa0612840:CDS |
| CAAGGTTCAAAACAGAGAAA+GGG | 0.537446 | 4_2:-61347791 | Msa0612840:CDS |
| TTGGAAATTCAAATGTTACA+TGG | 0.538799 | 4_2:-61347060 | Msa0612840:three_prime_UTR |
| TCTCAATGTTGGCAACCTCA+CGG | 0.539692 | 4_2:+61347591 | None:intergenic |
| AAGGGAGACTGAGCGTAACT+CGG | 0.540887 | 4_2:+61349965 | None:intergenic |
| AAGGTAACGTTCTTAGGGAA+TGG | 0.547512 | 4_2:-61349832 | Msa0612840:CDS |
| CACCTGCTAAAGACTCCAAA+GGG | 0.547927 | 4_2:-61347415 | Msa0612840:CDS |
| AACGAAGACCACTTCACCGC+CGG | 0.548831 | 4_2:-61350109 | Msa0612840:CDS |
| GAGTCTTTAGCAGGTGCAGG+TGG | 0.551285 | 4_2:+61347422 | None:intergenic |
| TCGCTGAATCCGAATACATC+CGG | 0.554031 | 4_2:+61349995 | None:intergenic |
| TGCTATTCAACTAGACGAGA+AGG | 0.554504 | 4_2:-61347911 | Msa0612840:CDS |
| CTTCGAACCAGTGCATGTGA+TGG | 0.556019 | 4_2:-61349945 | Msa0612840:CDS |
| GTGGTCTTCGTTGACGGTGA+AGG | 0.559914 | 4_2:+61350120 | None:intergenic |
| GCCAACATTGAGAAGAAAAG+AGG | 0.561154 | 4_2:-61347581 | Msa0612840:CDS |
| AAAGATTATTGAGGAAGCTG+AGG | 0.562392 | 4_2:-61347863 | Msa0612840:CDS |
| TCCGGCTCCATCTCAGCAGG+AGG | 0.569202 | 4_2:+61349857 | None:intergenic |
| GAAGCTGAGGATTACAAAGT+GGG | 0.570600 | 4_2:-61347850 | Msa0612840:CDS |
| TTCGTTGACGGTGAAGGACA+TGG | 0.571845 | 4_2:+61350126 | None:intergenic |
| ATCACATGCACTGGTTCGAA+GGG | 0.575990 | 4_2:+61349947 | None:intergenic |
| AGATCACACAACAGCAGCGC+CGG | 0.576259 | 4_2:-61350023 | Msa0612840:CDS |
| GCTGAGATGGAGCCGGAGGA+AGG | 0.577970 | 4_2:-61349851 | Msa0612840:CDS |
| TCCTGCTGAGATGGAGCCGG+AGG | 0.580872 | 4_2:-61349855 | Msa0612840:CDS |
| TCAGCAGGAGGAGGAAGCAC+CGG | 0.587615 | 4_2:+61349869 | None:intergenic |
| AAATTACTGGAAAGCAATTG+GGG | 0.589625 | 4_2:-61347624 | Msa0612840:CDS |
| CCTTGGAGGACAGTAACTGA+TGG | 0.599991 | 4_2:+61347536 | None:intergenic |
| CCACCGACCTTTCTAGGATG+CGG | 0.602155 | 4_2:-61347496 | Msa0612840:CDS |
| TGCACCTGAATCACAACCAA+AGG | 0.604455 | 4_2:-61347321 | Msa0612840:CDS |
| GGAGGAGGAATCATGTGAAG+TGG | 0.606489 | 4_2:+61347443 | None:intergenic |
| TGCTAAAGACTCCAAAGGGA+AGG | 0.606563 | 4_2:-61347411 | Msa0612840:CDS |
| CTGCCGCATCCTAGAAAGGT+CGG | 0.609710 | 4_2:+61347493 | None:intergenic |
| GGAAGCTGAGGATTACAAAG+TGG | 0.610216 | 4_2:-61347851 | Msa0612840:CDS |
| CGCATCCTAGAAAGGTCGGT+GGG | 0.610689 | 4_2:+61347497 | None:intergenic |
| TCAATGTTGGCAACCTCACG+GGG | 0.611587 | 4_2:+61347593 | None:intergenic |
| TCAAAACAGAGAAAGGGAGA+AGG | 0.613489 | 4_2:-61347785 | Msa0612840:intron |
| CCATCAGTTACTGTCCTCCA+AGG | 0.615544 | 4_2:-61347536 | Msa0612840:CDS |
| CCGCATCCTAGAAAGGTCGG+TGG | 0.616621 | 4_2:+61347496 | None:intergenic |
| TAAACCAAATGGATCAGCAC+CGG | 0.618396 | 4_2:-61347348 | Msa0612840:CDS |
| AAAGACTCCAAAGGGAAGGA+CGG | 0.629704 | 4_2:-61347407 | Msa0612840:CDS |
| GCACCTGCTAAAGACTCCAA+AGG | 0.630783 | 4_2:-61347416 | Msa0612840:CDS |
| CTGCTGTTGTGTGATCTACA+GGG | 0.636206 | 4_2:+61350029 | None:intergenic |
| CATGTGATGGAAAATGGAAA+CGG | 0.640946 | 4_2:-61349932 | Msa0612840:CDS |
| GGAGGAATCATGTGAAGTGG+TGG | 0.643969 | 4_2:+61347446 | None:intergenic |
| GACAACTATTCTGGATACGG+CGG | 0.653119 | 4_2:-61350079 | Msa0612840:CDS |
| ACGTTCTTAGGGAATGGCGC+CGG | 0.656812 | 4_2:-61349826 | Msa0612840:intron |
| ATCTACAGGGACATCTTCGG+CGG | 0.664893 | 4_2:+61350042 | None:intergenic |
| ATAGTTGTCGTCATCGCCGG+CGG | 0.666277 | 4_2:+61350093 | None:intergenic |
| TTAATGATTGAAATAAAATG+CGG | 0.669839 | 4_2:+61347123 | None:intergenic |
| GAAAGAAGCTCCTGCCACTG+AGG | 0.676516 | 4_2:-61347264 | Msa0612840:CDS |
| TGCAGCAGACTGCTCCTCAG+TGG | 0.680257 | 4_2:+61347250 | None:intergenic |
| TGGGGAGATAATTCCCCGTG+AGG | 0.688947 | 4_2:-61347606 | Msa0612840:CDS |
| GAAAATGGAAACGGTTACGG+CGG | 0.715577 | 4_2:-61349923 | Msa0612840:CDS |
| GCTCAATGTTGAGACAAACA+AGG | 0.723788 | 4_2:-61347809 | Msa0612840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTAAAAAATATAATGA+AGG | - | chr4_2:61348059-61348078 | Msa0612840:intron | 10.0% |
| !! | TAAAAAATATAATGAAGGAA+GGG | - | chr4_2:61348064-61348083 | Msa0612840:intron | 15.0% |
| !! | TAATAATTAAAAGTAGAGTA+AGG | - | chr4_2:61348975-61348994 | Msa0612840:intron | 15.0% |
| !! | ACAAATAGTATTTGTATTAA+TGG | + | chr4_2:61349141-61349160 | None:intergenic | 15.0% |
| !! | TAATACAAATACTATTTGTT+TGG | - | chr4_2:61349142-61349161 | Msa0612840:intron | 15.0% |
| !!! | ATCTCTAAAAATTAAAAGAA+CGG | + | chr4_2:61349506-61349525 | None:intergenic | 15.0% |
| !! | TTAATGATTGAAATAAAATG+CGG | + | chr4_2:61350094-61350113 | None:intergenic | 15.0% |
| !! | ATTGTCTTGAAAACATTTAT+TGG | - | chr4_2:61347955-61347974 | Msa0612840:intron | 20.0% |
| !! | AACATTTATTGGATTTAATG+AGG | - | chr4_2:61347966-61347985 | Msa0612840:intron | 20.0% |
| !! | ACATTTATTGGATTTAATGA+GGG | - | chr4_2:61347967-61347986 | Msa0612840:intron | 20.0% |
| !! | GTAAAAAATATAATGAAGGA+AGG | - | chr4_2:61348063-61348082 | Msa0612840:intron | 20.0% |
| !! | TTTATGTTAATTGTCTATGT+TGG | - | chr4_2:61348154-61348173 | Msa0612840:intron | 20.0% |
| !!! | TAATTTTTTTCCTTCGAATT+TGG | - | chr4_2:61348333-61348352 | Msa0612840:intron | 20.0% |
| !! | TAAAAAGTAAGTTCAGAATA+AGG | - | chr4_2:61348804-61348823 | Msa0612840:intron | 20.0% |
| !! | ATTCGTAAAAACATCAATAA+TGG | - | chr4_2:61348931-61348950 | Msa0612840:intron | 20.0% |
| !! | AATGAGATTAAAGATTATTG+AGG | - | chr4_2:61349342-61349361 | Msa0612840:intron | 20.0% |
| !!! | GTAAAAAGTAATGATAATGT+AGG | + | chr4_2:61349468-61349487 | None:intergenic | 20.0% |
| !! | AAAAAAAGGTTAAAAATGCA+GGG | + | chr4_2:61350040-61350059 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGTTAAAAATGC+AGG | + | chr4_2:61350041-61350060 | None:intergenic | 20.0% |
| !!! | GCATTTTATTTCAATCATTA+AGG | - | chr4_2:61350093-61350112 | Msa0612840:CDS | 20.0% |
| !!! | GAATCGTCTTTTGATTTTAA+CGG | + | chr4_2:61347020-61347039 | None:intergenic | 25.0% |
| !! | ATGTTTTCTTTTGAATGCTT+AGG | - | chr4_2:61347521-61347540 | Msa0612840:CDS | 25.0% |
| ! | TCGAAGGAAAAAAATTAACT+AGG | + | chr4_2:61348330-61348349 | None:intergenic | 25.0% |
| !! | AATTTGGTTTCTTTATGTGA+TGG | - | chr4_2:61348349-61348368 | Msa0612840:intron | 25.0% |
| ! | AGTCCATCATATTAAATGAT+GGG | - | chr4_2:61348611-61348630 | Msa0612840:intron | 25.0% |
| ! | AGATGGAATTAAGATATGTT+TGG | - | chr4_2:61348673-61348692 | Msa0612840:intron | 25.0% |
| !!! | TTTTTTTCTTCTTCCATCTT+AGG | - | chr4_2:61348879-61348898 | Msa0612840:intron | 25.0% |
| ! | AAAGTTTAAACTACCTAAGA+TGG | + | chr4_2:61348895-61348914 | None:intergenic | 25.0% |
| ! | AAATGGTTGATCTTTAAACA+TGG | - | chr4_2:61349033-61349052 | Msa0612840:intron | 25.0% |
| ! | TTATTCTGAACCTTAAATGT+AGG | - | chr4_2:61349180-61349199 | Msa0612840:intron | 25.0% |
| ! | AAATACTTGTCCTACATTTA+AGG | + | chr4_2:61349193-61349212 | None:intergenic | 25.0% |
| !! | GATCTTAAATCTCTAAAGAT+CGG | + | chr4_2:61349225-61349244 | None:intergenic | 25.0% |
| ! | TTTGTGAAAATTCTCTTGAT+TGG | + | chr4_2:61349559-61349578 | None:intergenic | 25.0% |
| ! | AAAAATTACTGGAAAGCAAT+TGG | - | chr4_2:61349588-61349607 | Msa0612840:intron | 25.0% |
| ! | AAAATTACTGGAAAGCAATT+GGG | - | chr4_2:61349589-61349608 | Msa0612840:intron | 25.0% |
| ! | AAAAAAGGTTAAAAATGCAG+GGG | + | chr4_2:61350039-61350058 | None:intergenic | 25.0% |
| ! | ACTAAAAGCTTGCAAAAAAA+AGG | + | chr4_2:61350054-61350073 | None:intergenic | 25.0% |
| ! | AAGGTCATAATAGACAATAA+TGG | + | chr4_2:61350136-61350155 | None:intergenic | 25.0% |
| ! | ATTATTGTCTATTATGACCT+TGG | - | chr4_2:61350135-61350154 | Msa0612840:exon | 25.0% |
| ! | ATGTAACATTTGAATTTCCA+AGG | + | chr4_2:61350155-61350174 | None:intergenic | 25.0% |
| ! | TTGGAAATTCAAATGTTACA+TGG | - | chr4_2:61350154-61350173 | Msa0612840:five_prime_UTR | 25.0% |
| AATGCTTAGGATTATGAATC+AGG | - | chr4_2:61347534-61347553 | Msa0612840:CDS | 30.0% | |
| ATGCTTAGGATTATGAATCA+GGG | - | chr4_2:61347535-61347554 | Msa0612840:CDS | 30.0% | |
| CCATCAAAAAAACTTGGTTT+CGG | + | chr4_2:61347637-61347656 | None:intergenic | 30.0% | |
| TCTCAACCATCAAAAAAACT+TGG | + | chr4_2:61347643-61347662 | None:intergenic | 30.0% | |
| !! | ATAATGGATGAATATGTCTG+TGG | - | chr4_2:61347813-61347832 | Msa0612840:CDS | 30.0% |
| AATATGTCTGTGGATCAATT+GGG | - | chr4_2:61347823-61347842 | Msa0612840:CDS | 30.0% | |
| TGAACATATGAGAAACATGT+AGG | - | chr4_2:61347994-61348013 | Msa0612840:intron | 30.0% | |
| GAACATATGAGAAACATGTA+GGG | - | chr4_2:61347995-61348014 | Msa0612840:intron | 30.0% | |
| AAACACGATATGCATATGTT+TGG | + | chr4_2:61348136-61348155 | None:intergenic | 30.0% | |
| GAACATCATAAAACTACACA+AGG | + | chr4_2:61348266-61348285 | None:intergenic | 30.0% | |
| ACTAGGAGTCTAGAAATAAA+GGG | + | chr4_2:61348313-61348332 | None:intergenic | 30.0% | |
| AACTAGGAGTCTAGAAATAA+AGG | + | chr4_2:61348314-61348333 | None:intergenic | 30.0% | |
| CATAAAGAAACCAAATTCGA+AGG | + | chr4_2:61348346-61348365 | None:intergenic | 30.0% | |
| !! | TTTCTTTATGTGATGGATCA+TGG | - | chr4_2:61348356-61348375 | Msa0612840:intron | 30.0% |
| ! | TTCATTTTCGTAGGAAAAGT+AGG | - | chr4_2:61348380-61348399 | Msa0612840:intron | 30.0% |
| ! | TCATTTTCGTAGGAAAAGTA+GGG | - | chr4_2:61348381-61348400 | Msa0612840:intron | 30.0% |
| !!! | CTACAGCTTTTTTTAATCGA+TGG | + | chr4_2:61348415-61348434 | None:intergenic | 30.0% |
| CAGTCCATCATATTAAATGA+TGG | - | chr4_2:61348610-61348629 | Msa0612840:intron | 30.0% | |
| TCTCCCATCATTTAATATGA+TGG | + | chr4_2:61348617-61348636 | None:intergenic | 30.0% | |
| TGACTATTTACTATCTGACA+CGG | + | chr4_2:61348783-61348802 | None:intergenic | 30.0% | |
| AATAATGGTTGAGCAAATGA+AGG | - | chr4_2:61348946-61348965 | Msa0612840:intron | 30.0% | |
| ! | AAATTGTTTTCTCACTACGT+GGG | + | chr4_2:61349103-61349122 | None:intergenic | 30.0% |
| ! | AAAATTGTTTTCTCACTACG+TGG | + | chr4_2:61349104-61349123 | None:intergenic | 30.0% |
| ! | GTAGTGAGAAAACAATTTTC+TGG | - | chr4_2:61349105-61349124 | Msa0612840:intron | 30.0% |
| ACTATTTGTTTGGTCATATG+AGG | - | chr4_2:61349152-61349171 | Msa0612840:intron | 30.0% | |
| TTAGAGATGAACTATGTTTG+TGG | - | chr4_2:61349518-61349537 | Msa0612840:intron | 30.0% | |
| ! | TCAAGAGAATTTTCACAAAG+AGG | - | chr4_2:61349560-61349579 | Msa0612840:intron | 30.0% |
| AAATTACTGGAAAGCAATTG+GGG | - | chr4_2:61349590-61349609 | Msa0612840:intron | 30.0% | |
| !!! | TTGCAAGCTTTTAGTTTGTA+TGG | - | chr4_2:61350059-61350078 | Msa0612840:CDS | 30.0% |
| ! | CATGTGATGGAAAATGGAAA+CGG | - | chr4_2:61347282-61347301 | Msa0612840:CDS | 35.0% |
| ATGGAAAATGGAAACGGTTA+CGG | - | chr4_2:61347288-61347307 | Msa0612840:CDS | 35.0% | |
| AGGATTATGAATCAGGGATT+AGG | - | chr4_2:61347541-61347560 | Msa0612840:CDS | 35.0% | |
| !!! | CCGAAACCAAGTTTTTTTGA+TGG | - | chr4_2:61347634-61347653 | Msa0612840:CDS | 35.0% |
| GAGTTCACTAAATCAGCATA+TGG | + | chr4_2:61347675-61347694 | None:intergenic | 35.0% | |
| AAAACAGATCCTACGAACTA+TGG | + | chr4_2:61347769-61347788 | None:intergenic | 35.0% | |
| ! | GTTTTGCATGCTTGTTTATG+CGG | - | chr4_2:61347784-61347803 | Msa0612840:intron | 35.0% |
| ! | TTTTGCATGCTTGTTTATGC+GGG | - | chr4_2:61347785-61347804 | Msa0612840:intron | 35.0% |
| ! | GTTTATGCGGGTTGAAATAA+TGG | - | chr4_2:61347797-61347816 | Msa0612840:CDS | 35.0% |
| GAATATGTCTGTGGATCAAT+TGG | - | chr4_2:61347822-61347841 | Msa0612840:CDS | 35.0% | |
| ATATGTCTGTGGATCAATTG+GGG | - | chr4_2:61347824-61347843 | Msa0612840:CDS | 35.0% | |
| CTAGATCTGAGTTTAACAGA+CGG | + | chr4_2:61347877-61347896 | None:intergenic | 35.0% | |
| TTGTCTATGTTGGCAAAACT+TGG | - | chr4_2:61348164-61348183 | Msa0612840:intron | 35.0% | |
| ACATGTTGCAACAATGAGAT+AGG | + | chr4_2:61348288-61348307 | None:intergenic | 35.0% | |
| ! | GATCATGGATTCATTTTCGT+AGG | - | chr4_2:61348371-61348390 | Msa0612840:intron | 35.0% |
| AGTTTCTATCATGTGATTGG+AGG | + | chr4_2:61348468-61348487 | None:intergenic | 35.0% | |
| TGGAGTTTCTATCATGTGAT+TGG | + | chr4_2:61348471-61348490 | None:intergenic | 35.0% | |
| AAGTTGTGCTTCAGTTGAAA+GGG | + | chr4_2:61348511-61348530 | None:intergenic | 35.0% | |
| AAAGTTGTGCTTCAGTTGAA+AGG | + | chr4_2:61348512-61348531 | None:intergenic | 35.0% | |
| ATGAACCAGAAGATCAAAGT+AGG | - | chr4_2:61348648-61348667 | Msa0612840:intron | 35.0% | |
| TCTATCCTACTTTGATCTTC+TGG | + | chr4_2:61348656-61348675 | None:intergenic | 35.0% | |
| GAAGATCAAAGTAGGATAGA+TGG | - | chr4_2:61348656-61348675 | Msa0612840:intron | 35.0% | |
| !! | ATGCAGAGCTTATAGTTTTG+TGG | + | chr4_2:61348742-61348761 | None:intergenic | 35.0% |
| GTAAGGTCAAAGAAAGCAAT+AGG | - | chr4_2:61348992-61349011 | Msa0612840:intron | 35.0% | |
| TGGTGTATGACAAGAAGTTA+TGG | - | chr4_2:61349053-61349072 | Msa0612840:intron | 35.0% | |
| AAAGATTATTGAGGAAGCTG+AGG | - | chr4_2:61349351-61349370 | Msa0612840:intron | 35.0% | |
| ! | AAGTGGGTTTCTATGAGAAA+AGG | - | chr4_2:61349380-61349399 | Msa0612840:intron | 35.0% |
| ACAAGGTTCAAAACAGAGAA+AGG | - | chr4_2:61349422-61349441 | Msa0612840:intron | 35.0% | |
| CAAGGTTCAAAACAGAGAAA+GGG | - | chr4_2:61349423-61349442 | Msa0612840:intron | 35.0% | |
| GTTTGTGGAACAGTTATACT+TGG | - | chr4_2:61349533-61349552 | Msa0612840:intron | 35.0% | |
| AAGAGGCTGACAAAAATTAC+TGG | - | chr4_2:61349577-61349596 | Msa0612840:intron | 35.0% | |
| TGAGAAGAAAAGAGGCAAAA+AGG | - | chr4_2:61349641-61349660 | Msa0612840:intron | 35.0% | |
| GAAACAGCAACTAAACCAAA+TGG | - | chr4_2:61349834-61349853 | Msa0612840:CDS | 35.0% | |
| TGAATCTACAGTACCGTTAT+TGG | + | chr4_2:61349925-61349944 | None:intergenic | 35.0% | |
| GACGACAACTATTCTGGATA+CGG | - | chr4_2:61347132-61347151 | Msa0612840:three_prime_UTR | 40.0% | |
| AAGGTAACGTTCTTAGGGAA+TGG | - | chr4_2:61347382-61347401 | Msa0612840:CDS | 40.0% | |
| ! | AAGGAATCTGAAACACTCAC+CGG | + | chr4_2:61347410-61347429 | None:intergenic | 40.0% |
| CAAACGAGATCTAGCATAGA+AGG | + | chr4_2:61347429-61347448 | None:intergenic | 40.0% | |
| TGATTTAGTGAACTCTTGCG+TGG | - | chr4_2:61347680-61347699 | Msa0612840:intron | 40.0% | |
| !!! | GGGTTAGTTTTATGCTCTGT+TGG | - | chr4_2:61347717-61347736 | Msa0612840:intron | 40.0% |
| GTTCGTATTCCATAGTTCGT+AGG | - | chr4_2:61347757-61347776 | Msa0612840:intron | 40.0% | |
| CGTCTGTTAAACTCAGATCT+AGG | - | chr4_2:61347875-61347894 | Msa0612840:CDS | 40.0% | |
| ACCATTGTGAGTGCTTCTAA+CGG | - | chr4_2:61348106-61348125 | Msa0612840:intron | 40.0% | |
| TGGAATGCAAGTTTAGCAAG+AGG | - | chr4_2:61348565-61348584 | Msa0612840:intron | 40.0% | |
| TGCTATTCAACTAGACGAGA+AGG | - | chr4_2:61349303-61349322 | Msa0612840:intron | 40.0% | |
| AACTAGACGAGAAGGAGAAA+AGG | - | chr4_2:61349311-61349330 | Msa0612840:intron | 40.0% | |
| ACTAGACGAGAAGGAGAAAA+GGG | - | chr4_2:61349312-61349331 | Msa0612840:intron | 40.0% | |
| GAAGCTGAGGATTACAAAGT+GGG | - | chr4_2:61349364-61349383 | Msa0612840:intron | 40.0% | |
| GCTCAATGTTGAGACAAACA+AGG | - | chr4_2:61349405-61349424 | Msa0612840:intron | 40.0% | |
| TCAAAACAGAGAAAGGGAGA+AGG | - | chr4_2:61349429-61349448 | Msa0612840:intron | 40.0% | |
| GCCAACATTGAGAAGAAAAG+AGG | - | chr4_2:61349633-61349652 | Msa0612840:intron | 40.0% | |
| ! | GCCTCTTTTCTTCTCAATGT+TGG | + | chr4_2:61349637-61349656 | None:intergenic | 40.0% |
| GAAAAGAGGCAAAAAGGATC+AGG | - | chr4_2:61349647-61349666 | Msa0612840:intron | 40.0% | |
| TAAACCAAATGGATCAGCAC+CGG | - | chr4_2:61349845-61349864 | Msa0612840:CDS | 40.0% | |
| AGAATAGTTGTCGTCATCGC+CGG | + | chr4_2:61347127-61347146 | None:intergenic | 45.0% | |
| GACAACTATTCTGGATACGG+CGG | - | chr4_2:61347135-61347154 | Msa0612840:three_prime_UTR | 45.0% | |
| GTGATCTACAGGGACATCTT+CGG | + | chr4_2:61347178-61347197 | None:intergenic | 45.0% | |
| CTGCTGTTGTGTGATCTACA+GGG | + | chr4_2:61347188-61347207 | None:intergenic | 45.0% | |
| TCGCTGAATCCGAATACATC+CGG | + | chr4_2:61347222-61347241 | None:intergenic | 45.0% | |
| TGTATTCGGATTCAGCGATC+AGG | - | chr4_2:61347224-61347243 | Msa0612840:three_prime_UTR | 45.0% | |
| !! | ATCACATGCACTGGTTCGAA+GGG | + | chr4_2:61347270-61347289 | None:intergenic | 45.0% |
| ! | CCATTTTCCATCACATGCAC+TGG | + | chr4_2:61347279-61347298 | None:intergenic | 45.0% |
| ! | CCAGTGCATGTGATGGAAAA+TGG | - | chr4_2:61347276-61347295 | Msa0612840:CDS | 45.0% |
| GAAAATGGAAACGGTTACGG+CGG | - | chr4_2:61347291-61347310 | Msa0612840:CDS | 45.0% | |
| CTAAGAACGTTACCTTCCTC+CGG | + | chr4_2:61347378-61347397 | None:intergenic | 45.0% | |
| GGAGGAAGGTAACGTTCTTA+GGG | - | chr4_2:61347377-61347396 | Msa0612840:CDS | 45.0% | |
| TGCTCTGTTGGATTGCAGTT+TGG | - | chr4_2:61347729-61347748 | Msa0612840:intron | 45.0% | |
| GTTTGACTACAATGCAGCGT+AGG | - | chr4_2:61348021-61348040 | Msa0612840:intron | 45.0% | |
| !! | ACCGTTAGAAGCACTCACAA+TGG | + | chr4_2:61348110-61348129 | None:intergenic | 45.0% |
| CTTCAGTTGAAAGGGAGATG+TGG | + | chr4_2:61348503-61348522 | None:intergenic | 45.0% | |
| ACTACGTGGGATTGACTACA+AGG | + | chr4_2:61349090-61349109 | None:intergenic | 45.0% | |
| GGAAGCTGAGGATTACAAAG+TGG | - | chr4_2:61349363-61349382 | Msa0612840:intron | 45.0% | |
| TCTCAATGTTGGCAACCTCA+CGG | + | chr4_2:61349626-61349645 | None:intergenic | 45.0% | |
| ATATCTGCCGCATCCTAGAA+AGG | + | chr4_2:61349728-61349747 | None:intergenic | 45.0% | |
| CACCTGCTAAAGACTCCAAA+GGG | - | chr4_2:61349799-61349818 | Msa0612840:intron | 45.0% | |
| !! | TTCCCTTTGGAGTCTTTAGC+AGG | + | chr4_2:61349804-61349823 | None:intergenic | 45.0% |
| TGCTAAAGACTCCAAAGGGA+AGG | - | chr4_2:61349803-61349822 | Msa0612840:intron | 45.0% | |
| AAAGACTCCAAAGGGAAGGA+CGG | - | chr4_2:61349807-61349826 | Msa0612840:intron | 45.0% | |
| ! | TTCTTTTCCGTCCTTCCCTT+TGG | + | chr4_2:61349817-61349836 | None:intergenic | 45.0% |
| !! | GGTTTAGGTGCTGATCCATT+TGG | + | chr4_2:61349852-61349871 | None:intergenic | 45.0% |
| GGATCAGCACCTAAACCAAA+TGG | - | chr4_2:61349855-61349874 | Msa0612840:CDS | 45.0% | |
| !! | GGTGCTGATCCATTTGGTTT+AGG | + | chr4_2:61349846-61349865 | None:intergenic | 45.0% |
| TGTGATTCAGGTGCAACTTC+CGG | + | chr4_2:61349888-61349907 | None:intergenic | 45.0% | |
| TGCACCTGAATCACAACCAA+AGG | - | chr4_2:61349893-61349912 | Msa0612840:CDS | 45.0% | |
| GCATCCTTTGGTTGTGATTC+AGG | + | chr4_2:61349900-61349919 | None:intergenic | 45.0% | |
| CCAAAGGATGCTGCCAATAA+CGG | - | chr4_2:61349909-61349928 | Msa0612840:CDS | 45.0% | |
| !! | AAAAATTAAAACAAAATATA+TGG | - | chr4_2:61348545-61348564 | Msa0612840:intron | 5.0% |
| !! | TAAATTATTAAGAATTTAAA+TGG | - | chr4_2:61349016-61349035 | Msa0612840:intron | 5.0% |
| TTCGTTGACGGTGAAGGACA+TGG | + | chr4_2:61347091-61347110 | None:intergenic | 50.0% | |
| GGTGAAGTGGTCTTCGTTGA+CGG | + | chr4_2:61347103-61347122 | None:intergenic | 50.0% | |
| GGCGATGACGACAACTATTC+TGG | - | chr4_2:61347126-61347145 | Msa0612840:three_prime_UTR | 50.0% | |
| ATCTACAGGGACATCTTCGG+CGG | + | chr4_2:61347175-61347194 | None:intergenic | 50.0% | |
| GCTGCTGTTGTGTGATCTAC+AGG | + | chr4_2:61347189-61347208 | None:intergenic | 50.0% | |
| CCGAATACATCCGGAGATTC+CGG | + | chr4_2:61347213-61347232 | None:intergenic | 50.0% | |
| CCGGAATCTCCGGATGTATT+CGG | - | chr4_2:61347210-61347229 | Msa0612840:three_prime_UTR | 50.0% | |
| AAGGGAGACTGAGCGTAACT+CGG | + | chr4_2:61347252-61347271 | None:intergenic | 50.0% | |
| !! | CATCACATGCACTGGTTCGA+AGG | + | chr4_2:61347271-61347290 | None:intergenic | 50.0% |
| CTTCGAACCAGTGCATGTGA+TGG | - | chr4_2:61347269-61347288 | Msa0612840:CDS | 50.0% | |
| ! | GACGACGTTTTTGTCTCCGA+TGG | - | chr4_2:61347321-61347340 | Msa0612840:CDS | 50.0% |
| ! | CGTTTTTGTCTCCGATGGTC+CGG | - | chr4_2:61347326-61347345 | Msa0612840:CDS | 50.0% |
| CGGAGGAAGGTAACGTTCTT+AGG | - | chr4_2:61347376-61347395 | Msa0612840:CDS | 50.0% | |
| GGGAGATGTGGTGCAATTGT+TGG | + | chr4_2:61348491-61348510 | None:intergenic | 50.0% | |
| GAGGTAGATCACAAGTCTCG+TGG | - | chr4_2:61348584-61348603 | Msa0612840:intron | 50.0% | |
| TCAATGTTGGCAACCTCACG+GGG | + | chr4_2:61349624-61349643 | None:intergenic | 50.0% | |
| CTCAATGTTGGCAACCTCAC+GGG | + | chr4_2:61349625-61349644 | None:intergenic | 50.0% | |
| CCTTGGAGGACAGTAACTGA+TGG | + | chr4_2:61349681-61349700 | None:intergenic | 50.0% | |
| CCATCAGTTACTGTCCTCCA+AGG | - | chr4_2:61349678-61349697 | Msa0612840:intron | 50.0% | |
| GGAGGAATCATGTGAAGTGG+TGG | + | chr4_2:61349771-61349790 | None:intergenic | 50.0% | |
| GGAGGAGGAATCATGTGAAG+TGG | + | chr4_2:61349774-61349793 | None:intergenic | 50.0% | |
| TTGGAGTCTTTAGCAGGTGC+AGG | + | chr4_2:61349798-61349817 | None:intergenic | 50.0% | |
| GCACCTGCTAAAGACTCCAA+AGG | - | chr4_2:61349798-61349817 | Msa0612840:intron | 50.0% | |
| !! | ACTTCCGGTGCTGATCCATT+TGG | + | chr4_2:61349873-61349892 | None:intergenic | 50.0% |
| CCGTTATTGGCAGCATCCTT+TGG | + | chr4_2:61349912-61349931 | None:intergenic | 50.0% | |
| GTGGTCTTCGTTGACGGTGA+AGG | + | chr4_2:61347097-61347116 | None:intergenic | 55.0% | |
| AACGAAGACCACTTCACCGC+CGG | - | chr4_2:61347105-61347124 | Msa0612840:three_prime_UTR | 55.0% | |
| ATAGTTGTCGTCATCGCCGG+CGG | + | chr4_2:61347124-61347143 | None:intergenic | 55.0% | |
| AGATCACACAACAGCAGCGC+CGG | - | chr4_2:61347191-61347210 | Msa0612840:three_prime_UTR | 55.0% | |
| ACGTTCTTAGGGAATGGCGC+CGG | - | chr4_2:61347388-61347407 | Msa0612840:CDS | 55.0% | |
| !! | TGCGTGGTGACGAGCTTTTG+AGG | - | chr4_2:61347696-61347715 | Msa0612840:intron | 55.0% |
| !! | GCGTGGTGACGAGCTTTTGA+GGG | - | chr4_2:61347697-61347716 | Msa0612840:intron | 55.0% |
| TGGGGAGATAATTCCCCGTG+AGG | - | chr4_2:61349608-61349627 | Msa0612840:intron | 55.0% | |
| GCAAACCCACCGACCTTTCT+AGG | - | chr4_2:61349712-61349731 | Msa0612840:intron | 55.0% | |
| CGCATCCTAGAAAGGTCGGT+GGG | + | chr4_2:61349720-61349739 | None:intergenic | 55.0% | |
| !! | CCACCGACCTTTCTAGGATG+CGG | - | chr4_2:61349718-61349737 | Msa0612840:intron | 55.0% |
| CTGCCGCATCCTAGAAAGGT+CGG | + | chr4_2:61349724-61349743 | None:intergenic | 55.0% | |
| TCTTTAGCAGGTGCAGGTGG+AGG | + | chr4_2:61349792-61349811 | None:intergenic | 55.0% | |
| GAGTCTTTAGCAGGTGCAGG+TGG | + | chr4_2:61349795-61349814 | None:intergenic | 55.0% | |
| GTGGCAGGAGCTTCTTTCTG+AGG | + | chr4_2:61349948-61349967 | None:intergenic | 55.0% | |
| GAAAGAAGCTCCTGCCACTG+AGG | - | chr4_2:61349950-61349969 | Msa0612840:CDS | 55.0% | |
| ! | AACAGCAGCGCCGGAATCTC+CGG | - | chr4_2:61347200-61347219 | Msa0612840:three_prime_UTR | 60.0% |
| !! | AGGAGGAAGCACCGGACCAT+CGG | + | chr4_2:61347340-61347359 | None:intergenic | 60.0% |
| ! | TCAGCAGGAGGAGGAAGCAC+CGG | + | chr4_2:61347348-61347367 | None:intergenic | 60.0% |
| GCTTCCTCCTCCTGCTGAGA+TGG | - | chr4_2:61347350-61347369 | Msa0612840:CDS | 60.0% | |
| TCCTCCTGCTGAGATGGAGC+CGG | - | chr4_2:61347356-61347375 | Msa0612840:CDS | 60.0% | |
| !! | GTTTGCCTGGCTTTGGGCCT+TGG | + | chr4_2:61349698-61349717 | None:intergenic | 60.0% |
| ! | CGGTGGGTTTGCCTGGCTTT+GGG | + | chr4_2:61349704-61349723 | None:intergenic | 60.0% |
| ! | TCGGTGGGTTTGCCTGGCTT+TGG | + | chr4_2:61349705-61349724 | None:intergenic | 60.0% |
| ! | GAAAGGTCGGTGGGTTTGCC+TGG | + | chr4_2:61349711-61349730 | None:intergenic | 60.0% |
| CCGCATCCTAGAAAGGTCGG+TGG | + | chr4_2:61349721-61349740 | None:intergenic | 60.0% | |
| TTAGCAGGTGCAGGTGGAGG+AGG | + | chr4_2:61349789-61349808 | None:intergenic | 60.0% | |
| TGCAGCAGACTGCTCCTCAG+TGG | + | chr4_2:61349967-61349986 | None:intergenic | 60.0% | |
| GGCTCCATCTCAGCAGGAGG+AGG | + | chr4_2:61347357-61347376 | None:intergenic | 65.0% | |
| TCCGGCTCCATCTCAGCAGG+AGG | + | chr4_2:61347360-61347379 | None:intergenic | 65.0% | |
| TCCTGCTGAGATGGAGCCGG+AGG | - | chr4_2:61347359-61347378 | Msa0612840:CDS | 65.0% | |
| TCCTCCGGCTCCATCTCAGC+AGG | + | chr4_2:61347363-61347382 | None:intergenic | 65.0% | |
| GCTGAGATGGAGCCGGAGGA+AGG | - | chr4_2:61347363-61347382 | Msa0612840:CDS | 65.0% | |
| GTCCTCCAAGGCCCAAAGCC+AGG | - | chr4_2:61349690-61349709 | Msa0612840:intron | 65.0% | |
| !! | TGCCTGGCTTTGGGCCTTGG+AGG | + | chr4_2:61349695-61349714 | None:intergenic | 65.0% |
| GCAGACTGCTCCTCAGTGGC+AGG | + | chr4_2:61349963-61349982 | None:intergenic | 65.0% | |
| CGTCATCGCCGGCGGTGAAG+TGG | + | chr4_2:61347116-61347135 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61347007 | 61350229 | 61347007 | ID=Msa0612840;Name=Msa0612840 |
| chr4_2 | mRNA | 61347007 | 61350229 | 61347007 | ID=Msa0612840-mRNA-1;Parent=Msa0612840;Name=Msa0612840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|1|1|1|1|1|3|240|305 |
| chr4_2 | exon | 61347007 | 61347690 | 61347007 | ID=Msa0612840-mRNA-1:exon:16672;Parent=Msa0612840-mRNA-1 |
| chr4_2 | exon | 61347786 | 61347939 | 61347786 | ID=Msa0612840-mRNA-1:exon:16671;Parent=Msa0612840-mRNA-1 |
| chr4_2 | exon | 61349827 | 61350229 | 61349827 | ID=Msa0612840-mRNA-1:exon:16670;Parent=Msa0612840-mRNA-1 |
| chr4_2 | five_prime_UTR | 61350147 | 61350229 | 61350147 | ID=Msa0612840-mRNA-1:five_prime_utr;Parent=Msa0612840-mRNA-1 |
| chr4_2 | CDS | 61349827 | 61350146 | 61349827 | ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1 |
| chr4_2 | CDS | 61347786 | 61347939 | 61347786 | ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1 |
| chr4_2 | CDS | 61347247 | 61347690 | 61347247 | ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1 |
| chr4_2 | three_prime_UTR | 61347007 | 61347246 | 61347007 | ID=Msa0612840-mRNA-1:three_prime_utr;Parent=Msa0612840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
