AlfalfaGEDB | Msa0612840

M. sativa cultivar zhongmu-4 / Msa0612840

KEGG: -
GO: GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805
PFAM: PF01086.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612840	XP_013457066.1	97.386	306	7	1	1	305	1	306	0.0	609

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612840	sp\|Q9SKU1\|CLC1_ARATH	52.303	304	119	8	21	301	22	322	4.77e-71	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006470	Msa0612840	-0.800343	1.506631e-48	-8.615850e-47
Msa0016480	Msa0612840	0.808862	2.513678e-50	-8.615850e-47
Msa0016500	Msa0612840	0.844175	8.896013e-59	-8.615850e-47
Msa0094940	Msa0612840	0.824181	9.275867e-54	-8.615850e-47
Msa0127810	Msa0612840	0.809350	1.975804e-50	-8.615850e-47
Msa0226620	Msa0612840	0.811025	8.605791e-51	-8.615850e-47
Msa0260230	Msa0612840	0.832368	9.840544e-56	-8.615850e-47
Msa0260270	Msa0612840	0.829867	4.047588e-55	-8.615850e-47
Msa0277000	Msa0612840	0.819634	1.047527e-52	-8.615850e-47
Msa0280950	Msa0612840	0.819611	1.060359e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612840	MtrunA17_Chr4g0047571	97.386	306	7	1	1	305	1	306	0.0	609
Msa0612840	MtrunA17_Chr2g0281981	68.771	301	82	5	9	305	21	313	1.72e-123	355
Msa0612840	MtrunA17_Chr8g0387061	51.084	323	119	8	14	305	32	346	1.14e-73	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612840	AT2G20760.1	52.303	304	119	8	21	301	22	322	4.85e-72	226
Msa0612840	AT2G40060.1	55.760	217	85	4	28	237	16	228	1.34e-66	209
Msa0612840	AT3G51890.1	62.264	159	57	1	87	245	85	240	5.54e-59	190

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Find 110 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACTGGAAAGCAATT+GGG	0.366531	4_2:-61347625	Msa0612840:CDS
AAAGACTCCAAAGGGAAGGA+CGG	0.629704	4_2:-61347407	Msa0612840:CDS
AAAGATTATTGAGGAAGCTG+AGG	0.562392	4_2:-61347863	Msa0612840:CDS
AAATTACTGGAAAGCAATTG+GGG	0.589625	4_2:-61347624	Msa0612840:CDS
AACAGCAGCGCCGGAATCTC+CGG	0.421407	4_2:-61350014	Msa0612840:CDS
AACGAAGACCACTTCACCGC+CGG	0.548831	4_2:-61350109	Msa0612840:CDS
AACTAGACGAGAAGGAGAAA+AGG	0.420773	4_2:-61347903	Msa0612840:CDS
AAGGGAGACTGAGCGTAACT+CGG	0.540887	4_2:+61349965	None:intergenic
AAGGTAACGTTCTTAGGGAA+TGG	0.547512	4_2:-61349832	Msa0612840:CDS
AAGGTCATAATAGACAATAA+TGG	0.479197	4_2:+61347081	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCTTAGGATTATGAATC+AGG	-	chr4_2:61347534-61347553	Msa0612840:CDS	30.0%
ATGCTTAGGATTATGAATCA+GGG	-	chr4_2:61347535-61347554	Msa0612840:CDS	30.0%
CCATCAAAAAAACTTGGTTT+CGG	+	chr4_2:61347637-61347656	None:intergenic	30.0%
TCTCAACCATCAAAAAAACT+TGG	+	chr4_2:61347643-61347662	None:intergenic	30.0%
AATATGTCTGTGGATCAATT+GGG	-	chr4_2:61347823-61347842	Msa0612840:CDS	30.0%
TGAACATATGAGAAACATGT+AGG	-	chr4_2:61347994-61348013	Msa0612840:intron	30.0%
GAACATATGAGAAACATGTA+GGG	-	chr4_2:61347995-61348014	Msa0612840:intron	30.0%
AAACACGATATGCATATGTT+TGG	+	chr4_2:61348136-61348155	None:intergenic	30.0%
GAACATCATAAAACTACACA+AGG	+	chr4_2:61348266-61348285	None:intergenic	30.0%
ACTAGGAGTCTAGAAATAAA+GGG	+	chr4_2:61348313-61348332	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	61347007	61350229	61347007	ID=Msa0612840;Name=Msa0612840
chr4_2	mRNA	61347007	61350229	61347007	ID=Msa0612840-mRNA-1;Parent=Msa0612840;Name=Msa0612840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83\|1\|1\|1\|1\|1\|3\|240\|305
chr4_2	exon	61347007	61347690	61347007	ID=Msa0612840-mRNA-1:exon:16672;Parent=Msa0612840-mRNA-1
chr4_2	exon	61347786	61347939	61347786	ID=Msa0612840-mRNA-1:exon:16671;Parent=Msa0612840-mRNA-1
chr4_2	exon	61349827	61350229	61349827	ID=Msa0612840-mRNA-1:exon:16670;Parent=Msa0612840-mRNA-1
chr4_2	five_prime_UTR	61350147	61350229	61350147	ID=Msa0612840-mRNA-1:five_prime_utr;Parent=Msa0612840-mRNA-1
chr4_2	CDS	61349827	61350146	61349827	ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1
chr4_2	CDS	61347786	61347939	61347786	ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1
chr4_2	CDS	61347247	61347690	61347247	ID=Msa0612840-mRNA-1:cds;Parent=Msa0612840-mRNA-1
chr4_2	three_prime_UTR	61347007	61347246	61347007	ID=Msa0612840-mRNA-1:three_prime_utr;Parent=Msa0612840-mRNA-1

Gene Sequence

>Msa0612840

ATGTCCTTCACCGTCAACGAAGACCACTTCACCGCCGGCGATGACGACAACTATTCTGGATACGGCGGATTCTCAAGCTACTCCGCCGAAGATGTCCCTGTAGATCACACAACAGCAGCGCCGGAATCTCCGGATGTATTCGGATTCAGCGATCAGGATCCGAGTTACGCTCAGTCTCCCTTCGAACCAGTGCATGTGATGGAAAATGGAAACGGTTACGGCGGTCACGATGACGACGTTTTTGTCTCCGATGGTCCGGTGCTTCCTCCTCCTGCTGAGATGGAGCCGGAGGAAGGTAACGTTCTTAGGGAATGGCGCCGTCAAAATGCTATTCAACTAGACGAGAAGGAGAAAAGGGAAAAAGAAATGAGATTAAAGATTATTGAGGAAGCTGAGGATTACAAAGTGGGTTTCTATGAGAAAAGGAAGCTCAATGTTGAGACAAACAAGGTTCAAAACAGAGAAAGGGAGAAGTTATACTTGGCCAATCAAGAGAATTTTCACAAAGAGGCTGACAAAAATTACTGGAAAGCAATTGGGGAGATAATTCCCCGTGAGGTTGCCAACATTGAGAAGAAAAGAGGCAAAAAGGATCAGGATAAGAATCCATCAGTTACTGTCCTCCAAGGCCCAAAGCCAGGCAAACCCACCGACCTTTCTAGGATGCGGCAGATATTGTTAAAGCTGAAACATACACCACCACTTCACATGATTCCTCCTCCACCTGCACCTGCTAAAGACTCCAAAGGGAAGGACGGAAAAGAAACAGCAACTAAACCAAATGGATCAGCACCTAAACCAAATGGATCAGCACCGGAAGTTGCACCTGAATCACAACCAAAGGATGCTGCCAATAACGGTACTGTAGATTCACCTCAGAAAGAAGCTCCTGCCACTGAGGAGCAGTCTGCTGCATAA

Protein sequence

>Msa0612840

MSFTVNEDHFTAGDDDNYSGYGGFSSYSAEDVPVDHTTAAPESPDVFGFSDQDPSYAQSPFEPVHVMENGNGYGGHDDDVFVSDGPVLPPPAEMEPEEGNVLREWRRQNAIQLDEKEKREKEMRLKIIEEAEDYKVGFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKAIGEIIPREVANIEKKRGKKDQDKNPSVTVLQGPKPGKPTDLSRMRQILLKLKHTPPLHMIPPPPAPAKDSKGKDGKETATKPNGSAPKPNGSAPEVAPESQPKDAANNGTVDSPQKEAPATEEQSAA*