Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016500 | XP_013470063.1 | 99.611 | 257 | 0 | 1 | 1 | 256 | 1 | 257 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016500 | sp|Q54DD7|UNC50_DICDI | 44.275 | 262 | 139 | 3 | 1 | 256 | 1 | 261 | 1.05e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016500 | Msa0612840 | 0.844175 | 8.896013e-59 | -8.615850e-47 |
| Msa0016500 | Msa0781220 | 0.807322 | 5.349191e-50 | -8.615850e-47 |
| Msa0016500 | Msa1178930 | 0.820467 | 6.754986e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016500 | MtrunA17_Chr1g0208051 | 99.611 | 257 | 0 | 1 | 1 | 256 | 1 | 257 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016500 | AT2G15240.1 | 85.532 | 235 | 34 | 0 | 22 | 256 | 18 | 252 | 4.89e-144 | 404 |
Find 82 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTGACTGGCATATTTC+TGG | 0.151764 | 1_1:+27290892 | Msa0016500:CDS |
| AATAGATTTGATAGCAATTC+TGG | 0.203453 | 1_1:-27291528 | None:intergenic |
| GGCCTACAATGATGCATTTC+CGG | 0.241107 | 1_1:-27292342 | None:intergenic |
| ACAATATGAGAAGGCTTAAA+TGG | 0.252992 | 1_1:+27292286 | Msa0016500:three_prime_UTR |
| CTATATACTTACACAACTTT+TGG | 0.255052 | 1_1:-27289537 | None:intergenic |
| TACCATTATCTAAATTTCTT+AGG | 0.266410 | 1_1:+27291573 | Msa0016500:CDS |
| ATCGCGTGCCCATTGATTCT+TGG | 0.282291 | 1_1:-27290384 | None:intergenic |
| TGTGATCTGCAGCCTTCTTT+TGG | 0.305006 | 1_1:+27290421 | Msa0016500:CDS |
| AAAGGTGGTCCTCTCCAAAA+AGG | 0.307456 | 1_1:-27292007 | None:intergenic |
| ATATGCCAGTCAATAGAAAA+TGG | 0.326818 | 1_1:-27290886 | None:intergenic |
| ACCAATTGGATACAGGAAAA+AGG | 0.338264 | 1_1:-27292025 | None:intergenic |
| TTCAGGTATGACCATAGTTC+TGG | 0.341007 | 1_1:+27290827 | Msa0016500:intron |
| GCCTACAATGATGCATTTCC+GGG | 0.345153 | 1_1:-27292341 | None:intergenic |
| CAATTCGACTCGATCCGTTT+CGG | 0.352145 | 1_1:-27288181 | None:intergenic |
| GTAAGGAAGAAGAGTGGAAT+TGG | 0.353691 | 1_1:-27288276 | None:intergenic |
| AACCTAAGAAATTTAGATAA+TGG | 0.356946 | 1_1:-27291575 | None:intergenic |
| CTCGAAGATAAGAATTAGTT+AGG | 0.359359 | 1_1:-27291031 | None:intergenic |
| GCTATCAAATCTATTATTCA+TGG | 0.365343 | 1_1:+27291536 | Msa0016500:CDS |
| CTAAATTTCTTAGGTTATGA+TGG | 0.374570 | 1_1:+27291582 | Msa0016500:CDS |
| CCCTCTCCGGTACCCTGCTT+CGG | 0.388053 | 1_1:-27288072 | None:intergenic |
| GACTCGATCCGTTTCGGCTA+CGG | 0.394215 | 1_1:-27288175 | None:intergenic |
| ATAGAGGAGATAGAAAATAA+TGG | 0.413708 | 1_1:-27291485 | None:intergenic |
| AGGACAATTACTACACCAAT+TGG | 0.428443 | 1_1:-27292039 | None:intergenic |
| TTCATTGTAGTGGCAACAAA+TGG | 0.444628 | 1_1:+27289470 | Msa0016500:intron |
| CTTCGATTGATAGTAGTAGA+AGG | 0.447661 | 1_1:-27292363 | None:intergenic |
| TCTCCTCTATTGGTGGCTCA+TGG | 0.448618 | 1_1:+27291498 | Msa0016500:CDS |
| CATTACTTCAGAACCTCAAC+AGG | 0.449759 | 1_1:-27292257 | None:intergenic |
| TGAAAGAATATATCGATTGT+TGG | 0.451253 | 1_1:-27292506 | None:intergenic |
| CTCTGATCTGAGTCCGAAGC+AGG | 0.455622 | 1_1:+27288059 | Msa0016500:five_prime_UTR |
| CTAAAATTTCTTTGTCAACT+CGG | 0.455629 | 1_1:+27292472 | Msa0016500:three_prime_UTR |
| AAACCATGAGCCACCAATAG+AGG | 0.456905 | 1_1:-27291501 | None:intergenic |
| CTGCAGATCACAACAAATGC+AGG | 0.457525 | 1_1:-27290410 | None:intergenic |
| CTCTTTCTCTCTCCCCTCTC+CGG | 0.458054 | 1_1:-27288085 | None:intergenic |
| GAAAGAATATATCGATTGTT+GGG | 0.458335 | 1_1:-27292505 | None:intergenic |
| GATCGTTTCCGTAGCCGAAA+CGG | 0.461440 | 1_1:+27288167 | Msa0016500:five_prime_UTR |
| AATTAGAAACCAAGAATCAA+TGG | 0.462371 | 1_1:+27290375 | Msa0016500:intron |
| CCGAAGCAGGGTACCGGAGA+GGG | 0.465446 | 1_1:+27288072 | Msa0016500:five_prime_UTR |
| AAAGTGCATGGCCAGAACTA+TGG | 0.469079 | 1_1:-27290838 | None:intergenic |
| AATACTTACAAATTGGAGAA+AGG | 0.479211 | 1_1:-27292059 | None:intergenic |
| CCATATAGCAAAACAAACAT+TGG | 0.479630 | 1_1:-27291363 | None:intergenic |
| CCCCGGAAATGCATCATTGT+AGG | 0.482193 | 1_1:+27292340 | Msa0016500:three_prime_UTR |
| GCTGGAGTGATCATATTTGT+CGG | 0.487410 | 1_1:-27292211 | None:intergenic |
| ATGTTCATAAAGTATCTAGA+AGG | 0.490832 | 1_1:-27292179 | None:intergenic |
| TTGATAATTCTGCGGAGGTA+AGG | 0.492063 | 1_1:-27288293 | None:intergenic |
| TGTTCAACCACATAACTGTT+TGG | 0.493819 | 1_1:-27291062 | None:intergenic |
| CATATAGCAAAACAAACATT+GGG | 0.498728 | 1_1:-27291362 | None:intergenic |
| TTACCTCCGCAGAATTATCA+AGG | 0.501424 | 1_1:+27288295 | Msa0016500:CDS |
| GGGTCGAGAGGAAGATGAAG+AGG | 0.502177 | 1_1:-27288255 | None:intergenic |
| TTACTACACCAATTGGATAC+AGG | 0.505412 | 1_1:-27292032 | None:intergenic |
| TAAGGAAGAAGAGTGGAATT+GGG | 0.507072 | 1_1:-27288275 | None:intergenic |
| AAGAGTGGAATTGGGTCGAG+AGG | 0.513571 | 1_1:-27288267 | None:intergenic |
| GACCAGTCCGTGTCCTGTTG+AGG | 0.516351 | 1_1:+27292244 | Msa0016500:three_prime_UTR |
| ATTAGAAACCAAGAATCAAT+GGG | 0.517637 | 1_1:+27290376 | Msa0016500:intron |
| TCGAGAGGAAGATGAAGAGG+AGG | 0.523857 | 1_1:-27288252 | None:intergenic |
| CGAAGCAGGGTACCGGAGAG+GGG | 0.528606 | 1_1:+27288073 | Msa0016500:five_prime_UTR |
| CTGAGTCCGAAGCAGGGTAC+CGG | 0.530528 | 1_1:+27288066 | Msa0016500:five_prime_UTR |
| AACCTCAACAGGACACGGAC+TGG | 0.533895 | 1_1:-27292246 | None:intergenic |
| CTGTTGAGGTTCTGAAGTAA+TGG | 0.538216 | 1_1:+27292258 | Msa0016500:three_prime_UTR |
| TAATTCTTATCTTCGAGAAG+AGG | 0.547601 | 1_1:+27291037 | Msa0016500:CDS |
| TTCGGCCCAAGTTAACATAG+TGG | 0.554984 | 1_1:+27288010 | None:intergenic |
| GTTTGACGAACGCAATACCC+CGG | 0.558320 | 1_1:+27292323 | Msa0016500:three_prime_UTR |
| AAGTTGCAACAGCCAAAAGA+AGG | 0.559727 | 1_1:-27290433 | None:intergenic |
| CTTCGGACTCAGATCAGAGA+TGG | 0.562829 | 1_1:-27288055 | None:intergenic |
| ATCAAATCTATTATTCATGG+TGG | 0.570031 | 1_1:+27291539 | Msa0016500:CDS |
| GAGCGTCCTTTCGAAACTGT+TGG | 0.575354 | 1_1:-27288221 | None:intergenic |
| AATCGATATATTCTTTCATG+AGG | 0.584441 | 1_1:+27292511 | Msa0016500:three_prime_UTR |
| TTCAGAACCTCAACAGGACA+CGG | 0.590512 | 1_1:-27292251 | None:intergenic |
| TCAAATCTATTATTCATGGT+GGG | 0.597237 | 1_1:+27291540 | Msa0016500:CDS |
| TGGTTGAACAGCGTGTTGAA+TGG | 0.609570 | 1_1:+27291075 | Msa0016500:CDS |
| AGAGGCTCCAAACAGTTATG+TGG | 0.616391 | 1_1:+27291055 | Msa0016500:CDS |
| ATGGAGGCTACAATATGAGA+AGG | 0.618334 | 1_1:+27292277 | Msa0016500:three_prime_UTR |
| TTGAGGTTCTGAAGTAATGG+AGG | 0.622168 | 1_1:+27292261 | Msa0016500:three_prime_UTR |
| ATGTTACCAACAGTTTCGAA+AGG | 0.623237 | 1_1:+27288215 | Msa0016500:CDS |
| TCCGAAGCAGGGTACCGGAG+AGG | 0.638235 | 1_1:+27288071 | Msa0016500:five_prime_UTR |
| TGCAGATCACAACAAATGCA+GGG | 0.638452 | 1_1:-27290409 | None:intergenic |
| AGAATATATCGATTGTTGGG+AGG | 0.643666 | 1_1:-27292502 | None:intergenic |
| GTACCTTGATAATTCTGCGG+AGG | 0.646223 | 1_1:-27288298 | None:intergenic |
| TGGGTACCTTGATAATTCTG+CGG | 0.658546 | 1_1:-27288301 | None:intergenic |
| TCTGATCTGAGTCCGAAGCA+GGG | 0.661087 | 1_1:+27288060 | Msa0016500:five_prime_UTR |
| GCGGAGGTAAGGAAGAAGAG+TGG | 0.669478 | 1_1:-27288282 | None:intergenic |
| ACTCAGATCAGAGATGGACA+AGG | 0.691174 | 1_1:-27288049 | None:intergenic |
| CCTACAATGATGCATTTCCG+GGG | 0.733756 | 1_1:-27292340 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGGATTTTTCTAAATAAA+AGG | - | chr1_1:27288765-27288784 | None:intergenic | 15.0% |
| !! | AAAAAGTAGATAATAGAAAA+TGG | - | chr1_1:27288783-27288802 | None:intergenic | 15.0% |
| !! | CATTATAATCCAAAATATTA+AGG | - | chr1_1:27289077-27289096 | None:intergenic | 15.0% |
| !! | AAAATCATAATATTCTCATT+AGG | + | chr1_1:27289241-27289260 | Msa0016500:intron | 15.0% |
| !!! | ATTTTGTTTTCTTTTCAATT+TGG | + | chr1_1:27289315-27289334 | Msa0016500:intron | 15.0% |
| !!! | AATTTTATTATTCATTGTAG+TGG | + | chr1_1:27289460-27289479 | Msa0016500:intron | 15.0% |
| !!! | TAAACAAAGCCTTAATATTT+TGG | + | chr1_1:27289065-27289084 | Msa0016500:intron | 20.0% |
| !!! | TTGGATTATAATGTTTTGAA+TGG | + | chr1_1:27289084-27289103 | Msa0016500:intron | 20.0% |
| !! | TCTTGATGTTAAAAAAAAGA+TGG | - | chr1_1:27289578-27289597 | None:intergenic | 20.0% |
| !!! | TCTGTATTGTTTTGATTTAT+TGG | + | chr1_1:27289867-27289886 | Msa0016500:intron | 20.0% |
| !! | AATTAACTGCAACATTTAAA+TGG | - | chr1_1:27290173-27290192 | None:intergenic | 20.0% |
| !!! | ATAACATGTTTCTATAAGAA+TGG | - | chr1_1:27290634-27290653 | None:intergenic | 20.0% |
| !!! | TATTTGGTCAAATGTTATTT+AGG | + | chr1_1:27291182-27291201 | Msa0016500:intron | 20.0% |
| !! | AAAAACATCTTGAATTTAAG+TGG | + | chr1_1:27291434-27291453 | Msa0016500:intron | 20.0% |
| !! | TACCATTATCTAAATTTCTT+AGG | + | chr1_1:27291573-27291592 | Msa0016500:CDS | 20.0% |
| !! | AACCTAAGAAATTTAGATAA+TGG | - | chr1_1:27291578-27291597 | None:intergenic | 20.0% |
| !! | CACATTAAATACTTACAAAT+TGG | - | chr1_1:27292069-27292088 | None:intergenic | 20.0% |
| !! | ATCACTGAAAATAAGAAATT+GGG | - | chr1_1:27292143-27292162 | None:intergenic | 20.0% |
| !! | AATCACTGAAAATAAGAAAT+TGG | - | chr1_1:27292144-27292163 | None:intergenic | 20.0% |
| ! | AAGTGAATTAGCGAAATTAA+GGG | - | chr1_1:27288355-27288374 | None:intergenic | 25.0% |
| ! | TAAAAGCGAACACATAATTT+AGG | - | chr1_1:27288566-27288585 | None:intergenic | 25.0% |
| ! | AATTAGAAGATGTTAGAATC+TGG | + | chr1_1:27288592-27288611 | Msa0016500:intron | 25.0% |
| !! | GTTTTCTTTTCAATTTGGTA+TGG | + | chr1_1:27289320-27289339 | Msa0016500:intron | 25.0% |
| ! | AAAATAATAAGTATAGCGCA+AGG | - | chr1_1:27289375-27289394 | None:intergenic | 25.0% |
| ! | TAAAATTACAGAGAACGAAA+AGG | - | chr1_1:27289447-27289466 | None:intergenic | 25.0% |
| !! | CTATATACTTACACAACTTT+TGG | - | chr1_1:27289540-27289559 | None:intergenic | 25.0% |
| !!! | TATTGGTACATGTTTTAAAC+AGG | + | chr1_1:27289884-27289903 | Msa0016500:intron | 25.0% |
| !!! | ATTGGTACATGTTTTAAACA+GGG | + | chr1_1:27289885-27289904 | Msa0016500:intron | 25.0% |
| ! | GGATAATTAATTGCAGATAA+AGG | - | chr1_1:27289970-27289989 | None:intergenic | 25.0% |
| ! | GTGTTAGCATAGAAAATAAA+GGG | + | chr1_1:27290024-27290043 | Msa0016500:intron | 25.0% |
| ! | TGTTAGCATAGAAAATAAAG+GGG | + | chr1_1:27290025-27290044 | Msa0016500:intron | 25.0% |
| ! | GAGAAATATCTTGCATAAAT+TGG | + | chr1_1:27290065-27290084 | Msa0016500:intron | 25.0% |
| ! | AAATATCTTGCATAAATTGG+AGG | + | chr1_1:27290068-27290087 | Msa0016500:intron | 25.0% |
| !! | TGCAGTTAATTCTTTTGATA+AGG | + | chr1_1:27290182-27290201 | Msa0016500:intron | 25.0% |
| ! | ATGTAACTATATAGTGTTTC+AGG | + | chr1_1:27290258-27290277 | Msa0016500:intron | 25.0% |
| ! | AATTAGAAACCAAGAATCAA+TGG | + | chr1_1:27290375-27290394 | Msa0016500:intron | 25.0% |
| ! | ATTAGAAACCAAGAATCAAT+GGG | + | chr1_1:27290376-27290395 | Msa0016500:intron | 25.0% |
| ! | TTTGTAGCTCATATATTTAG+TGG | + | chr1_1:27290585-27290604 | Msa0016500:intron | 25.0% |
| !! | TAATTTTCCCATTCATTTTC+AGG | + | chr1_1:27290810-27290829 | Msa0016500:intron | 25.0% |
| ! | TGAGTCAACATAATAAAAAC+TGG | - | chr1_1:27291121-27291140 | None:intergenic | 25.0% |
| !!! | ATTATATCTTTGGTTTTCCA+TGG | + | chr1_1:27291300-27291319 | Msa0016500:intron | 25.0% |
| ! | CATATAGCAAAACAAACATT+GGG | - | chr1_1:27291365-27291384 | None:intergenic | 25.0% |
| ! | ATAACAATTCATACTAACTG+AGG | - | chr1_1:27291401-27291420 | None:intergenic | 25.0% |
| ! | AGTATGAATTGTTATGATGT+TGG | + | chr1_1:27291406-27291425 | Msa0016500:intron | 25.0% |
| ! | ATAGAGGAGATAGAAAATAA+TGG | - | chr1_1:27291488-27291507 | None:intergenic | 25.0% |
| !! | TTATTTTCTATCTCCTCTAT+TGG | + | chr1_1:27291488-27291507 | Msa0016500:CDS | 25.0% |
| !! | AATAGATTTGATAGCAATTC+TGG | - | chr1_1:27291531-27291550 | None:intergenic | 25.0% |
| ! | GCTATCAAATCTATTATTCA+TGG | + | chr1_1:27291536-27291555 | Msa0016500:CDS | 25.0% |
| ! | ATCAAATCTATTATTCATGG+TGG | + | chr1_1:27291539-27291558 | Msa0016500:CDS | 25.0% |
| ! | TCAAATCTATTATTCATGGT+GGG | + | chr1_1:27291540-27291559 | Msa0016500:CDS | 25.0% |
| ! | CTAAATTTCTTAGGTTATGA+TGG | + | chr1_1:27291582-27291601 | Msa0016500:CDS | 25.0% |
| ! | TGATGCTTCAAAAGTTTAAT+TGG | - | chr1_1:27291780-27291799 | None:intergenic | 25.0% |
| ! | AAAACACCAAAAACAATACT+CGG | - | chr1_1:27291830-27291849 | None:intergenic | 25.0% |
| ! | ATTCAGAGCTATACATATTT+GGG | - | chr1_1:27291907-27291926 | None:intergenic | 25.0% |
| ! | AATTCAGAGCTATACATATT+TGG | - | chr1_1:27291908-27291927 | None:intergenic | 25.0% |
| !!! | AAATATGTATAGCTCTGAAT+TGG | + | chr1_1:27291907-27291926 | Msa0016500:intron | 25.0% |
| ! | AATACTTACAAATTGGAGAA+AGG | - | chr1_1:27292062-27292081 | None:intergenic | 25.0% |
| !! | TTATTTTCAGTGATTTTGAG+TGG | + | chr1_1:27292149-27292168 | Msa0016500:intron | 25.0% |
| !! | ATGTTCATAAAGTATCTAGA+AGG | - | chr1_1:27292182-27292201 | None:intergenic | 25.0% |
| ! | CTAAAATTTCTTTGTCAACT+CGG | + | chr1_1:27292472-27292491 | Msa0016500:three_prime_UTR | 25.0% |
| !! | GAAAGAATATATCGATTGTT+GGG | - | chr1_1:27292508-27292527 | None:intergenic | 25.0% |
| !! | TGAAAGAATATATCGATTGT+TGG | - | chr1_1:27292509-27292528 | None:intergenic | 25.0% |
| ! | AATCGATATATTCTTTCATG+AGG | + | chr1_1:27292511-27292530 | Msa0016500:three_prime_UTR | 25.0% |
| AAGAAATGAAGAGATCAGTT+GGG | - | chr1_1:27288323-27288342 | None:intergenic | 30.0% | |
| GAAGTGAATTAGCGAAATTA+AGG | - | chr1_1:27288356-27288375 | None:intergenic | 30.0% | |
| AACAGCATTTGCAATGAAAT+GGG | - | chr1_1:27288391-27288410 | None:intergenic | 30.0% | |
| TCAATAATTCATGAACTGAG+CGG | - | chr1_1:27288490-27288509 | None:intergenic | 30.0% | |
| TAAATAAAAGGTTCGCACAA+AGG | - | chr1_1:27288753-27288772 | None:intergenic | 30.0% | |
| !!! | ATCTACTTTTTTGTGTGAAC+CGG | + | chr1_1:27288792-27288811 | Msa0016500:intron | 30.0% |
| AAATAGATAATAGACTGCAC+AGG | - | chr1_1:27288989-27289008 | None:intergenic | 30.0% | |
| ! | TTCTTTTCAATTTGGTATGG+AGG | + | chr1_1:27289323-27289342 | Msa0016500:intron | 30.0% |
| !!! | TTTGCTGTATTTTTTGACTC+AGG | + | chr1_1:27289406-27289425 | Msa0016500:intron | 30.0% |
| ! | TGGATGTTGAATACACTTTT+TGG | + | chr1_1:27289490-27289509 | Msa0016500:CDS | 30.0% |
| !! | TACATGTTTTAAACAGGGTT+TGG | + | chr1_1:27289890-27289909 | Msa0016500:intron | 30.0% |
| CGTGTTAGCATAGAAAATAA+AGG | + | chr1_1:27290023-27290042 | Msa0016500:intron | 30.0% | |
| TTTACATTTGTAGAACAACC+AGG | + | chr1_1:27290541-27290560 | Msa0016500:intron | 30.0% | |
| TCACACTAGTTATATATTCC+TGG | - | chr1_1:27290562-27290581 | None:intergenic | 30.0% | |
| TAGCTCATATATTTAGTGGT+AGG | + | chr1_1:27290589-27290608 | Msa0016500:intron | 30.0% | |
| AGCTCATATATTTAGTGGTA+GGG | + | chr1_1:27290590-27290609 | Msa0016500:intron | 30.0% | |
| ! | CATGTTATCGCTTTAAACTT+TGG | + | chr1_1:27290646-27290665 | Msa0016500:intron | 30.0% |
| TAATCGTGAATATTGAACTG+TGG | + | chr1_1:27290686-27290705 | Msa0016500:intron | 30.0% | |
| GGCACTTAATGAACTAAATA+GGG | - | chr1_1:27290757-27290776 | None:intergenic | 30.0% | |
| ! | CTATTCCATTTTCTATTGAC+TGG | + | chr1_1:27290881-27290900 | Msa0016500:CDS | 30.0% |
| ATATGCCAGTCAATAGAAAA+TGG | - | chr1_1:27290889-27290908 | None:intergenic | 30.0% | |
| !!! | TATTTCTGGCAACTTTTTGT+TGG | + | chr1_1:27290906-27290925 | Msa0016500:CDS | 30.0% |
| AATCTAACGACTTGAAGAAA+AGG | - | chr1_1:27290962-27290981 | None:intergenic | 30.0% | |
| ATAAGAATTAGTTAGGAACC+TGG | - | chr1_1:27291027-27291046 | None:intergenic | 30.0% | |
| CTCGAAGATAAGAATTAGTT+AGG | - | chr1_1:27291034-27291053 | None:intergenic | 30.0% | |
| TAATTCTTATCTTCGAGAAG+AGG | + | chr1_1:27291037-27291056 | Msa0016500:CDS | 30.0% | |
| ! | GGTCAAATGTTATTTAGGAA+AGG | + | chr1_1:27291187-27291206 | Msa0016500:intron | 30.0% |
| CCAAAGATATAATCAGCAAT+TGG | - | chr1_1:27291293-27291312 | None:intergenic | 30.0% | |
| ! | CCAATTGCTGATTATATCTT+TGG | + | chr1_1:27291290-27291309 | Msa0016500:intron | 30.0% |
| CCATATAGCAAAACAAACAT+TGG | - | chr1_1:27291366-27291385 | None:intergenic | 30.0% | |
| !!! | CCAATGTTTGTTTTGCTATA+TGG | + | chr1_1:27291363-27291382 | Msa0016500:CDS | 30.0% |
| !! | ATTTAAGTGGTACTGATATC+TGG | + | chr1_1:27291447-27291466 | Msa0016500:intron | 30.0% |
| TTTCTTAGGTTATGATGGTA+AGG | + | chr1_1:27291587-27291606 | Msa0016500:intron | 30.0% | |
| GTCTCATAAACAATGTCTTA+TGG | + | chr1_1:27291681-27291700 | Msa0016500:intron | 30.0% | |
| ACAATGTCTTATGGCTATAA+AGG | + | chr1_1:27291690-27291709 | Msa0016500:intron | 30.0% | |
| !!! | GTGTTTTTCTAAAATCCCTT+TGG | + | chr1_1:27291843-27291862 | Msa0016500:intron | 30.0% |
| CAGATTGTGTAAAACAGAAA+TGG | - | chr1_1:27292096-27292115 | None:intergenic | 30.0% | |
| ACAATATGAGAAGGCTTAAA+TGG | + | chr1_1:27292286-27292305 | Msa0016500:three_prime_UTR | 30.0% | |
| ATGTTACCAACAGTTTCGAA+AGG | + | chr1_1:27288215-27288234 | Msa0016500:CDS | 35.0% | |
| TAAGGAAGAAGAGTGGAATT+GGG | - | chr1_1:27288278-27288297 | None:intergenic | 35.0% | |
| GAAGAAATGAAGAGATCAGT+TGG | - | chr1_1:27288324-27288343 | None:intergenic | 35.0% | |
| TTTGCAATGAAATGGGGAAT+CGG | - | chr1_1:27288384-27288403 | None:intergenic | 35.0% | |
| ACAGCATTTGCAATGAAATG+GGG | - | chr1_1:27288390-27288409 | None:intergenic | 35.0% | |
| CAACAGCATTTGCAATGAAA+TGG | - | chr1_1:27288392-27288411 | None:intergenic | 35.0% | |
| TTGCAAATGCTGTTGAATTG+TGG | + | chr1_1:27288397-27288416 | Msa0016500:intron | 35.0% | |
| GGCGCAATATTATAAACCAT+AGG | + | chr1_1:27288418-27288437 | Msa0016500:intron | 35.0% | |
| !!! | TCTACTTTTTTGTGTGAACC+GGG | + | chr1_1:27288793-27288812 | Msa0016500:intron | 35.0% |
| ! | TGCTTTTCCTTCATTTTCCA+CGG | - | chr1_1:27289208-27289227 | None:intergenic | 35.0% |
| ! | GAAGGAAAAGCATAATGTAG+CGG | + | chr1_1:27289216-27289235 | Msa0016500:intron | 35.0% |
| TTAGGAAAATTACCGTTAGC+TGG | + | chr1_1:27289259-27289278 | Msa0016500:intron | 35.0% | |
| TTCATTGTAGTGGCAACAAA+TGG | + | chr1_1:27289470-27289489 | Msa0016500:intron | 35.0% | |
| ! | ATTGTTGTTGCATGAGATCA+TGG | - | chr1_1:27289620-27289639 | None:intergenic | 35.0% |
| TCTCATGCAACAACAATATG+AGG | + | chr1_1:27289623-27289642 | Msa0016500:intron | 35.0% | |
| TAAATTTACCACCAAACGCA+TGG | + | chr1_1:27289661-27289680 | Msa0016500:intron | 35.0% | |
| AAACACATACACAACCAAAG+GGG | - | chr1_1:27289728-27289747 | None:intergenic | 35.0% | |
| CAAACACATACACAACCAAA+GGG | - | chr1_1:27289729-27289748 | None:intergenic | 35.0% | |
| ! | CGTTTTTCGTACACTTGATA+TGG | + | chr1_1:27289777-27289796 | Msa0016500:intron | 35.0% |
| ATACAGATATTCGTGAGAAG+TGG | - | chr1_1:27289854-27289873 | None:intergenic | 35.0% | |
| TGCATAAATTGGAGGAAACA+CGG | + | chr1_1:27290076-27290095 | Msa0016500:intron | 35.0% | |
| ! | TCTTTTGATAAGGAGCTCTA+AGG | + | chr1_1:27290192-27290211 | Msa0016500:intron | 35.0% |
| ! | CTAAGGAACTTTGGCTTATT+AGG | + | chr1_1:27290209-27290228 | Msa0016500:intron | 35.0% |
| GCTTGTACATGAACTTTGTT+TGG | + | chr1_1:27290231-27290250 | Msa0016500:intron | 35.0% | |
| ! | CGTAAGTTTCTCATGCATTT+TGG | + | chr1_1:27290471-27290490 | Msa0016500:intron | 35.0% |
| ! | AAGTTTCTCATGCATTTTGG+CGG | + | chr1_1:27290474-27290493 | Msa0016500:intron | 35.0% |
| TAGCTAGTCATCTAATCATG+AGG | - | chr1_1:27290508-27290527 | None:intergenic | 35.0% | |
| GGGCACTTAATGAACTAAAT+AGG | - | chr1_1:27290758-27290777 | None:intergenic | 35.0% | |
| GGTCATACCTGAAAATGAAT+GGG | - | chr1_1:27290820-27290839 | None:intergenic | 35.0% | |
| TGGTCATACCTGAAAATGAA+TGG | - | chr1_1:27290821-27290840 | None:intergenic | 35.0% | |
| ! | AGAAGACAACAAAAAGTGCA+TGG | - | chr1_1:27290853-27290872 | None:intergenic | 35.0% |
| ! | TCTATTGACTGGCATATTTC+TGG | + | chr1_1:27290892-27290911 | Msa0016500:CDS | 35.0% |
| ! | TTTTGACCCATATATTCTCC+AGG | + | chr1_1:27291006-27291025 | Msa0016500:intron | 35.0% |
| TAGGAACCTGGAGAATATAT+GGG | - | chr1_1:27291015-27291034 | None:intergenic | 35.0% | |
| TTAGGAACCTGGAGAATATA+TGG | - | chr1_1:27291016-27291035 | None:intergenic | 35.0% | |
| TGTTCAACCACATAACTGTT+TGG | - | chr1_1:27291065-27291084 | None:intergenic | 35.0% | |
| !!! | TATCTTTGGTTTTCCATGGA+AGG | + | chr1_1:27291304-27291323 | Msa0016500:intron | 35.0% |
| ! | TTTTCTATCTCCTCTATTGG+TGG | + | chr1_1:27291491-27291510 | Msa0016500:CDS | 35.0% |
| TTGTTAGTGTGTTGTATCCT+TGG | + | chr1_1:27291647-27291666 | Msa0016500:intron | 35.0% | |
| TGTTAGTGTGTTGTATCCTT+GGG | + | chr1_1:27291648-27291667 | Msa0016500:intron | 35.0% | |
| TGTCTTATGGCTATAAAGGA+TGG | + | chr1_1:27291694-27291713 | Msa0016500:intron | 35.0% | |
| GTCTTATGGCTATAAAGGAT+GGG | + | chr1_1:27291695-27291714 | Msa0016500:intron | 35.0% | |
| !! | TTTGCACCGAGTATTGTTTT+TGG | + | chr1_1:27291821-27291840 | Msa0016500:intron | 35.0% |
| AGAACGCATGTTAAAGTTCT+TGG | + | chr1_1:27291870-27291889 | Msa0016500:intron | 35.0% | |
| !! | TTGGATGTATAGCTCTGAAT+TGG | + | chr1_1:27291926-27291945 | Msa0016500:intron | 35.0% |
| !! | ATGTATAGCTCTGAATTGGA+AGG | + | chr1_1:27291911-27291930 | Msa0016500:intron | 35.0% |
| GACTAATTGATTGACATCTG+TGG | + | chr1_1:27291972-27291991 | Msa0016500:intron | 35.0% | |
| AATTGGATACAGGAAAAAGG+TGG | - | chr1_1:27292025-27292044 | None:intergenic | 35.0% | |
| ! | ACCTTTTTCCTGTATCCAAT+TGG | + | chr1_1:27292024-27292043 | Msa0016500:CDS | 35.0% |
| ACCAATTGGATACAGGAAAA+AGG | - | chr1_1:27292028-27292047 | None:intergenic | 35.0% | |
| TTACTACACCAATTGGATAC+AGG | - | chr1_1:27292035-27292054 | None:intergenic | 35.0% | |
| AGGACAATTACTACACCAAT+TGG | - | chr1_1:27292042-27292061 | None:intergenic | 35.0% | |
| ! | CTTCGATTGATAGTAGTAGA+AGG | - | chr1_1:27292366-27292385 | None:intergenic | 35.0% |
| ! | AGAATATATCGATTGTTGGG+AGG | - | chr1_1:27292505-27292524 | None:intergenic | 35.0% |
| GTAAGGAAGAAGAGTGGAAT+TGG | - | chr1_1:27288279-27288298 | None:intergenic | 40.0% | |
| ! | TTGATAATTCTGCGGAGGTA+AGG | - | chr1_1:27288296-27288315 | None:intergenic | 40.0% |
| TTACCTCCGCAGAATTATCA+AGG | + | chr1_1:27288295-27288314 | Msa0016500:CDS | 40.0% | |
| ! | TGGGTACCTTGATAATTCTG+CGG | - | chr1_1:27288304-27288323 | None:intergenic | 40.0% |
| GAGGAGTCAATCTAATCCTA+TGG | - | chr1_1:27288437-27288456 | None:intergenic | 40.0% | |
| CTGGAAATGATCCATTGTGA+TGG | + | chr1_1:27288611-27288630 | Msa0016500:intron | 40.0% | |
| !! | TGGTGCTTTTCTGGGAATAA+TGG | + | chr1_1:27288651-27288670 | Msa0016500:intron | 40.0% |
| AGCTGTGTTAAATCTCTTGC+GGG | - | chr1_1:27288889-27288908 | None:intergenic | 40.0% | |
| CAGCTGTGTTAAATCTCTTG+CGG | - | chr1_1:27288890-27288909 | None:intergenic | 40.0% | |
| ATCTCTTCCAGTTTAACCAG+GGG | - | chr1_1:27288942-27288961 | None:intergenic | 40.0% | |
| GATCTCTTCCAGTTTAACCA+GGG | - | chr1_1:27288943-27288962 | None:intergenic | 40.0% | |
| !! | TGTTTTGAATGGTGTGTGTG+TGG | + | chr1_1:27289095-27289114 | Msa0016500:intron | 40.0% |
| ATAATAGTCTCATGCCCCAA+TGG | + | chr1_1:27289152-27289171 | Msa0016500:intron | 40.0% | |
| TTCTATTCCCTACACCATTG+GGG | - | chr1_1:27289169-27289188 | None:intergenic | 40.0% | |
| CTTCTATTCCCTACACCATT+GGG | - | chr1_1:27289170-27289189 | None:intergenic | 40.0% | |
| TCTTCTATTCCCTACACCAT+TGG | - | chr1_1:27289171-27289190 | None:intergenic | 40.0% | |
| TGAGATACCGTGGAAAATGA+AGG | + | chr1_1:27289198-27289217 | Msa0016500:intron | 40.0% | |
| GTAAAACTGACACCAGCTAA+CGG | - | chr1_1:27289274-27289293 | None:intergenic | 40.0% | |
| CTCAACCAACCATCAGTTTA+TGG | - | chr1_1:27289687-27289706 | None:intergenic | 40.0% | |
| CCAAACACATACACAACCAA+AGG | - | chr1_1:27289730-27289749 | None:intergenic | 40.0% | |
| CCTTTGGTTGTGTATGTGTT+TGG | + | chr1_1:27289727-27289746 | Msa0016500:intron | 40.0% | |
| CTTGATATGGAACTGTGCAA+TGG | + | chr1_1:27289790-27289809 | Msa0016500:intron | 40.0% | |
| TAATTATCCACAGTGCGCTA+TGG | + | chr1_1:27289981-27290000 | Msa0016500:intron | 40.0% | |
| GGATAGAGGGGAATAATGAT+GGG | + | chr1_1:27290097-27290116 | Msa0016500:intron | 40.0% | |
| !! | TAAGGAGCTCTAAGGAACTT+TGG | + | chr1_1:27290200-27290219 | Msa0016500:intron | 40.0% |
| TGCAGATCACAACAAATGCA+GGG | - | chr1_1:27290412-27290431 | None:intergenic | 40.0% | |
| AAGTTGCAACAGCCAAAAGA+AGG | - | chr1_1:27290436-27290455 | None:intergenic | 40.0% | |
| !! | TCTTTTGGCTGTTGCAACTT+TGG | + | chr1_1:27290436-27290455 | Msa0016500:CDS | 40.0% |
| TTAGTTCATTAAGTGCCCCT+AGG | + | chr1_1:27290760-27290779 | Msa0016500:intron | 40.0% | |
| TAGTTCATTAAGTGCCCCTA+GGG | + | chr1_1:27290761-27290780 | Msa0016500:intron | 40.0% | |
| TTCAGGTATGACCATAGTTC+TGG | + | chr1_1:27290827-27290846 | Msa0016500:intron | 40.0% | |
| TCAGAGCATGCACTACTATT+TGG | + | chr1_1:27291166-27291185 | Msa0016500:intron | 40.0% | |
| !!! | GGTACTGATATCTGGTCTTT+TGG | + | chr1_1:27291455-27291474 | Msa0016500:intron | 40.0% |
| ! | AAGGATGGGTTTCGTTACTT+AGG | + | chr1_1:27291709-27291728 | Msa0016500:intron | 40.0% |
| ACATGCGTTCTCATTCCAAA+GGG | - | chr1_1:27291861-27291880 | None:intergenic | 40.0% | |
| AACATGCGTTCTCATTCCAA+AGG | - | chr1_1:27291862-27291881 | None:intergenic | 40.0% | |
| GCTGGAGTGATCATATTTGT+CGG | - | chr1_1:27292214-27292233 | None:intergenic | 40.0% | |
| !! | GACTGGTCAAAAGTTTTAGC+TGG | - | chr1_1:27292232-27292251 | None:intergenic | 40.0% |
| CATTACTTCAGAACCTCAAC+AGG | - | chr1_1:27292260-27292279 | None:intergenic | 40.0% | |
| !! | CTGTTGAGGTTCTGAAGTAA+TGG | + | chr1_1:27292258-27292277 | Msa0016500:three_prime_UTR | 40.0% |
| !! | TTGAGGTTCTGAAGTAATGG+AGG | + | chr1_1:27292261-27292280 | Msa0016500:three_prime_UTR | 40.0% |
| ATGGAGGCTACAATATGAGA+AGG | + | chr1_1:27292277-27292296 | Msa0016500:three_prime_UTR | 40.0% | |
| ACTCAGATCAGAGATGGACA+AGG | - | chr1_1:27288052-27288071 | None:intergenic | 45.0% | |
| ! | CAATTCGACTCGATCCGTTT+CGG | - | chr1_1:27288184-27288203 | None:intergenic | 45.0% |
| ! | GTACCTTGATAATTCTGCGG+AGG | - | chr1_1:27288301-27288320 | None:intergenic | 45.0% |
| ACAGTGCTCAAGTAATCACG+AGG | - | chr1_1:27288456-27288475 | None:intergenic | 45.0% | |
| ! | TGGTAGGTATGGTGCTTTTC+TGG | + | chr1_1:27288642-27288661 | Msa0016500:intron | 45.0% |
| ! | GGTAGGTATGGTGCTTTTCT+GGG | + | chr1_1:27288643-27288662 | Msa0016500:intron | 45.0% |
| GTCTTAACAGTTGCGCACAA+AGG | - | chr1_1:27288822-27288841 | None:intergenic | 45.0% | |
| GGATCTCTTCCAGTTTAACC+AGG | - | chr1_1:27288944-27288963 | None:intergenic | 45.0% | |
| CCACATGGATGAGATGGTAA+GGG | - | chr1_1:27288965-27288984 | None:intergenic | 45.0% | |
| ACCACATGGATGAGATGGTA+AGG | - | chr1_1:27288966-27288985 | None:intergenic | 45.0% | |
| TTTGAATGGTGTGTGTGTGG+TGG | + | chr1_1:27289098-27289117 | Msa0016500:intron | 45.0% | |
| ATGGTGTGCTTCGTATGGTA+CGG | + | chr1_1:27289121-27289140 | Msa0016500:intron | 45.0% | |
| ! | AGAGAAAGTGTGAGATACCG+TGG | + | chr1_1:27289188-27289207 | Msa0016500:intron | 45.0% |
| TCAGTTTATGGCCATGCGTT+TGG | - | chr1_1:27289675-27289694 | None:intergenic | 45.0% | |
| AACGCATGGCCATAAACTGA+TGG | + | chr1_1:27289675-27289694 | Msa0016500:intron | 45.0% | |
| CATGGCCATAAACTGATGGT+TGG | + | chr1_1:27289679-27289698 | Msa0016500:intron | 45.0% | |
| ! | TTGGTCAGTGACGTTTGTTG+AGG | + | chr1_1:27289909-27289928 | Msa0016500:intron | 45.0% |
| ATTGGAGGAAACACGGATAG+AGG | + | chr1_1:27290083-27290102 | Msa0016500:intron | 45.0% | |
| TTGGAGGAAACACGGATAGA+GGG | + | chr1_1:27290084-27290103 | Msa0016500:intron | 45.0% | |
| CGGATAGAGGGGAATAATGA+TGG | + | chr1_1:27290096-27290115 | Msa0016500:intron | 45.0% | |
| CTGCAGATCACAACAAATGC+AGG | - | chr1_1:27290413-27290432 | None:intergenic | 45.0% | |
| ! | TGTGATCTGCAGCCTTCTTT+TGG | + | chr1_1:27290421-27290440 | Msa0016500:CDS | 45.0% |
| AGTTCATTAAGTGCCCCTAG+GGG | + | chr1_1:27290762-27290781 | Msa0016500:intron | 45.0% | |
| AATGTTAGCAGATGCCCCTA+GGG | - | chr1_1:27290779-27290798 | None:intergenic | 45.0% | |
| AAATGTTAGCAGATGCCCCT+AGG | - | chr1_1:27290780-27290799 | None:intergenic | 45.0% | |
| AAAGTGCATGGCCAGAACTA+TGG | - | chr1_1:27290841-27290860 | None:intergenic | 45.0% | |
| ! | CTGGCAACTTTTTGTTGGTG+AGG | + | chr1_1:27290911-27290930 | Msa0016500:intron | 45.0% |
| AGAGGCTCCAAACAGTTATG+TGG | + | chr1_1:27291055-27291074 | Msa0016500:CDS | 45.0% | |
| TGGTTGAACAGCGTGTTGAA+TGG | + | chr1_1:27291075-27291094 | Msa0016500:CDS | 45.0% | |
| CAAACGCATACATCCTTCCA+TGG | - | chr1_1:27291320-27291339 | None:intergenic | 45.0% | |
| AAACCATGAGCCACCAATAG+AGG | - | chr1_1:27291504-27291523 | None:intergenic | 45.0% | |
| GGGTTTCGTTACTTAGGTCT+TGG | + | chr1_1:27291715-27291734 | Msa0016500:intron | 45.0% | |
| !! | GGTTGTAGTTCTGCCCTTTT+TGG | + | chr1_1:27291993-27292012 | Msa0016500:intron | 45.0% |
| !! | TAGTTCTGCCCTTTTTGGAG+AGG | + | chr1_1:27291998-27292017 | Msa0016500:intron | 45.0% |
| AAGGTGGTCCTCTCCAAAAA+GGG | - | chr1_1:27292009-27292028 | None:intergenic | 45.0% | |
| AAAGGTGGTCCTCTCCAAAA+AGG | - | chr1_1:27292010-27292029 | None:intergenic | 45.0% | |
| TTCAGAACCTCAACAGGACA+CGG | - | chr1_1:27292254-27292273 | None:intergenic | 45.0% | |
| CCTACAATGATGCATTTCCG+GGG | - | chr1_1:27292343-27292362 | None:intergenic | 45.0% | |
| GCCTACAATGATGCATTTCC+GGG | - | chr1_1:27292344-27292363 | None:intergenic | 45.0% | |
| GGCCTACAATGATGCATTTC+CGG | - | chr1_1:27292345-27292364 | None:intergenic | 45.0% | |
| !! | TAAATTTAATCAAATAAAAT+AGG | - | chr1_1:27289649-27289668 | None:intergenic | 5.0% |
| CTTCGGACTCAGATCAGAGA+TGG | - | chr1_1:27288058-27288077 | None:intergenic | 50.0% | |
| TCTGATCTGAGTCCGAAGCA+GGG | + | chr1_1:27288060-27288079 | Msa0016500:five_prime_UTR | 50.0% | |
| GATCGTTTCCGTAGCCGAAA+CGG | + | chr1_1:27288167-27288186 | Msa0016500:five_prime_UTR | 50.0% | |
| GAGCGTCCTTTCGAAACTGT+TGG | - | chr1_1:27288224-27288243 | None:intergenic | 50.0% | |
| TCGAGAGGAAGATGAAGAGG+AGG | - | chr1_1:27288255-27288274 | None:intergenic | 50.0% | |
| AAGAGTGGAATTGGGTCGAG+AGG | - | chr1_1:27288270-27288289 | None:intergenic | 50.0% | |
| CCATGCTCTCTCCATCACAA+TGG | - | chr1_1:27288625-27288644 | None:intergenic | 50.0% | |
| ! | CCATTGTGATGGAGAGAGCA+TGG | + | chr1_1:27288622-27288641 | Msa0016500:intron | 50.0% |
| ! | TGTGATGGAGAGAGCATGGT+AGG | + | chr1_1:27288626-27288645 | Msa0016500:intron | 50.0% |
| ! | TGGAGAGAGCATGGTAGGTA+TGG | + | chr1_1:27288631-27288650 | Msa0016500:intron | 50.0% |
| AGTTGCGCACAAAGGTTACC+CGG | - | chr1_1:27288814-27288833 | None:intergenic | 50.0% | |
| ! | TTAAGACTAGTCCCTCGAGC+CGG | + | chr1_1:27288835-27288854 | Msa0016500:intron | 50.0% |
| TTAACACAGCTGCATGCCCA+TGG | + | chr1_1:27288898-27288917 | Msa0016500:intron | 50.0% | |
| CTGGGTTTGAATCCAGCCAT+GGG | - | chr1_1:27288917-27288936 | None:intergenic | 50.0% | |
| CCCTTACCATCTCATCCATG+TGG | + | chr1_1:27288962-27288981 | Msa0016500:intron | 50.0% | |
| ACAGGACCACATGGATGAGA+TGG | - | chr1_1:27288971-27288990 | None:intergenic | 50.0% | |
| ATAGACTGCACAGGACCACA+TGG | - | chr1_1:27288980-27288999 | None:intergenic | 50.0% | |
| ! | AATGGTGTGTGTGTGGTGGA+TGG | + | chr1_1:27289102-27289121 | Msa0016500:intron | 50.0% |
| TGGTGTGCTTCGTATGGTAC+GGG | + | chr1_1:27289122-27289141 | Msa0016500:intron | 50.0% | |
| TCTCATGCCCCAATGGTGTA+GGG | + | chr1_1:27289159-27289178 | Msa0016500:intron | 50.0% | |
| GTTTATGGCCATGCGTTTGG+TGG | - | chr1_1:27289672-27289691 | None:intergenic | 50.0% | |
| ACACAACCAAAGGGGTGACT+GGG | - | chr1_1:27289720-27289739 | None:intergenic | 50.0% | |
| TACACAACCAAAGGGGTGAC+TGG | - | chr1_1:27289721-27289740 | None:intergenic | 50.0% | |
| ! | GTCAGTGACGTTTGTTGAGG+AGG | + | chr1_1:27289912-27289931 | Msa0016500:intron | 50.0% |
| GTAACTACCATAGCGCACTG+TGG | - | chr1_1:27289991-27290010 | None:intergenic | 50.0% | |
| TGGAGGAAACACGGATAGAG+GGG | + | chr1_1:27290085-27290104 | Msa0016500:intron | 50.0% | |
| !! | ATCGCGTGCCCATTGATTCT+TGG | - | chr1_1:27290387-27290406 | None:intergenic | 50.0% |
| !! | CTCATGCATTTTGGCGGCAA+TGG | + | chr1_1:27290480-27290499 | Msa0016500:intron | 50.0% |
| ATGTTAGCAGATGCCCCTAG+GGG | - | chr1_1:27290778-27290797 | None:intergenic | 50.0% | |
| ! | TCTCCTCTATTGGTGGCTCA+TGG | + | chr1_1:27291498-27291517 | Msa0016500:CDS | 50.0% |
| GTTTGACGAACGCAATACCC+CGG | + | chr1_1:27292323-27292342 | Msa0016500:three_prime_UTR | 50.0% | |
| CCCCGGAAATGCATCATTGT+AGG | + | chr1_1:27292340-27292359 | Msa0016500:three_prime_UTR | 50.0% | |
| CTCTGATCTGAGTCCGAAGC+AGG | + | chr1_1:27288059-27288078 | Msa0016500:five_prime_UTR | 55.0% | |
| CTCTTTCTCTCTCCCCTCTC+CGG | - | chr1_1:27288088-27288107 | None:intergenic | 55.0% | |
| GACTCGATCCGTTTCGGCTA+CGG | - | chr1_1:27288178-27288197 | None:intergenic | 55.0% | |
| GGGTCGAGAGGAAGATGAAG+AGG | - | chr1_1:27288258-27288277 | None:intergenic | 55.0% | |
| GCGGAGGTAAGGAAGAAGAG+TGG | - | chr1_1:27288285-27288304 | None:intergenic | 55.0% | |
| ! | TAAGACTAGTCCCTCGAGCC+GGG | + | chr1_1:27288836-27288855 | Msa0016500:intron | 55.0% |
| GGGAGAACTTTGTCACCCGT+TGG | - | chr1_1:27288869-27288888 | None:intergenic | 55.0% | |
| CCTGGGTTTGAATCCAGCCA+TGG | - | chr1_1:27288918-27288937 | None:intergenic | 55.0% | |
| CCATGGCTGGATTCAAACCC+AGG | + | chr1_1:27288915-27288934 | Msa0016500:intron | 55.0% | |
| CCAGTTTAACCAGGGGTCCT+GGG | - | chr1_1:27288935-27288954 | None:intergenic | 55.0% | |
| TCCAGTTTAACCAGGGGTCC+TGG | - | chr1_1:27288936-27288955 | None:intergenic | 55.0% | |
| GGTGGATGGTGTGCTTCGTA+TGG | + | chr1_1:27289116-27289135 | Msa0016500:intron | 55.0% | |
| GTCTCATGCCCCAATGGTGT+AGG | + | chr1_1:27289158-27289177 | Msa0016500:intron | 55.0% | |
| TACTCACCCAGTCACCCCTT+TGG | + | chr1_1:27289711-27289730 | Msa0016500:intron | 55.0% | |
| TGAGACAGCAGACACACCCA+AGG | - | chr1_1:27291667-27291686 | None:intergenic | 55.0% | |
| AACCTCAACAGGACACGGAC+TGG | - | chr1_1:27292249-27292268 | None:intergenic | 55.0% | |
| CTGAGTCCGAAGCAGGGTAC+CGG | + | chr1_1:27288066-27288085 | Msa0016500:five_prime_UTR | 60.0% | |
| TCACCCGTTGGAGTCCTACC+CGG | - | chr1_1:27288857-27288876 | None:intergenic | 60.0% | |
| GGATTCAAACCCAGGACCCC+TGG | + | chr1_1:27288923-27288942 | Msa0016500:intron | 60.0% | |
| CCCAGGACCCCTGGTTAAAC+TGG | + | chr1_1:27288932-27288951 | Msa0016500:intron | 60.0% | |
| GACCAGTCCGTGTCCTGTTG+AGG | + | chr1_1:27292244-27292263 | Msa0016500:three_prime_UTR | 60.0% | |
| !! | TCCGAAGCAGGGTACCGGAG+AGG | + | chr1_1:27288071-27288090 | Msa0016500:five_prime_UTR | 65.0% |
| CCCTCTCCGGTACCCTGCTT+CGG | - | chr1_1:27288075-27288094 | None:intergenic | 65.0% | |
| !! | CCGAAGCAGGGTACCGGAGA+GGG | + | chr1_1:27288072-27288091 | Msa0016500:five_prime_UTR | 65.0% |
| !! | CGAAGCAGGGTACCGGAGAG+GGG | + | chr1_1:27288073-27288092 | Msa0016500:five_prime_UTR | 65.0% |
| ACTAGTCCCTCGAGCCGGGT+AGG | + | chr1_1:27288840-27288859 | Msa0016500:intron | 65.0% | |
| ! | TGGAGTCCTACCCGGCTCGA+GGG | - | chr1_1:27288849-27288868 | None:intergenic | 65.0% |
| ! | TTGGAGTCCTACCCGGCTCG+AGG | - | chr1_1:27288850-27288869 | None:intergenic | 65.0% |
| CGAGCCGGGTAGGACTCCAA+CGG | + | chr1_1:27288850-27288869 | Msa0016500:intron | 65.0% | |
| GAGCCGGGTAGGACTCCAAC+GGG | + | chr1_1:27288851-27288870 | Msa0016500:intron | 65.0% | |
| CACAGCTGCATGCCCATGGC+TGG | + | chr1_1:27288902-27288921 | Msa0016500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27288020 | 27292579 | 27288020 | ID=Msa0016500;Name=Msa0016500 |
| chr1_1 | mRNA | 27288020 | 27292579 | 27288020 | ID=Msa0016500-mRNA-1;Parent=Msa0016500;Name=Msa0016500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=195|1|1|1|0.77|0.7|10|356|256 |
| chr1_1 | exon | 27288020 | 27288316 | 27288020 | ID=Msa0016500-mRNA-1:exon:9227;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27289480 | 27289547 | 27289480 | ID=Msa0016500-mRNA-1:exon:9228;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27289819 | 27289844 | 27289819 | ID=Msa0016500-mRNA-1:exon:9229;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27290381 | 27290471 | 27290381 | ID=Msa0016500-mRNA-1:exon:9230;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27290832 | 27290927 | 27290832 | ID=Msa0016500-mRNA-1:exon:9231;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27291028 | 27291096 | 27291028 | ID=Msa0016500-mRNA-1:exon:9232;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27291326 | 27291384 | 27291326 | ID=Msa0016500-mRNA-1:exon:9233;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27291481 | 27291603 | 27291481 | ID=Msa0016500-mRNA-1:exon:9234;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27292001 | 27292072 | 27292001 | ID=Msa0016500-mRNA-1:exon:9235;Parent=Msa0016500-mRNA-1 |
| chr1_1 | exon | 27292159 | 27292579 | 27292159 | ID=Msa0016500-mRNA-1:exon:9236;Parent=Msa0016500-mRNA-1 |
| chr1_1 | five_prime_UTR | 27288020 | 27288214 | 27288020 | ID=Msa0016500-mRNA-1:five_prime_utr;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27288215 | 27288316 | 27288215 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27289480 | 27289547 | 27289480 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27289819 | 27289844 | 27289819 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27290381 | 27290471 | 27290381 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27290832 | 27290927 | 27290832 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27291028 | 27291096 | 27291028 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27291326 | 27291384 | 27291326 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27291481 | 27291603 | 27291481 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27292001 | 27292072 | 27292001 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | CDS | 27292159 | 27292223 | 27292159 | ID=Msa0016500-mRNA-1:cds;Parent=Msa0016500-mRNA-1 |
| chr1_1 | three_prime_UTR | 27292224 | 27292579 | 27292224 | ID=Msa0016500-mRNA-1:three_prime_utr;Parent=Msa0016500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
