AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017740 MtrunA17_Chr1g0151941 92.803 264 7 2 1 264 1 252 0.0 498
Msa0017740 MtrunA17_Chr3g0135311 59.172 169 58 1 1 169 1 158 5.84e-66 209
Msa0017740 MtrunA17_Chr6g0487491 70.992 131 35 1 1 131 1 128 8.91e-65 203
Msa0017740 MtrunA17_Chr1g0152011 70.769 130 27 1 1 130 1 119 1.12e-64 205
Msa0017740 MtrunA17_Chr5g0400821 51.142 219 82 4 1 211 1 202 1.36e-64 204
Msa0017740 MtrunA17_Chr7g0264641 63.291 158 40 3 1 151 1 147 3.77e-64 201
Msa0017740 MtrunA17_Chr4g0028311 69.231 130 29 1 1 130 1 119 7.94e-63 200
Msa0017740 MtrunA17_Chr4g0072751 74.590 122 20 1 1 122 1 111 2.97e-62 199
Msa0017740 MtrunA17_Chr2g0327351 69.672 122 26 1 1 122 1 111 7.72e-60 192
Msa0017740 MtrunA17_Chr4g0054391 69.421 121 26 1 1 121 1 110 1.55e-58 188
Msa0017740 MtrunA17_Chr6g0452271 55.758 165 57 5 1 162 1 152 5.86e-56 182
Msa0017740 MtrunA17_Chr4g0039971 56.429 140 47 3 1 140 2 127 3.30e-50 168
Msa0017740 MtrunA17_Chr3g0103281 53.125 160 58 4 1 156 1 147 5.58e-50 167
Msa0017740 MtrunA17_Chr1g0203411 49.682 157 63 3 1 153 1 145 8.89e-50 165
Msa0017740 MtrunA17_Chr3g0115821 50.633 158 62 4 1 156 1 144 1.00e-49 167
Msa0017740 MtrunA17_Chr4g0037141 42.130 216 101 6 1 208 1 200 2.06e-49 164
Msa0017740 MtrunA17_Chr2g0323411 58.140 129 42 2 1 129 1 117 2.85e-49 165
Msa0017740 MtrunA17_Chr1g0187761 60.156 128 39 2 1 128 1 116 4.98e-49 162
Msa0017740 MtrunA17_Chr7g0217221 60.156 128 39 2 1 128 1 116 9.44e-49 162
Msa0017740 MtrunA17_Chr4g0048511 53.521 142 51 4 1 141 1 128 1.44e-48 164
Msa0017740 MtrunA17_Chr1g0167691 46.409 181 71 3 1 167 1 169 2.28e-48 160
Msa0017740 MtrunA17_Chr8g0346561 59.375 128 40 2 1 128 1 116 2.73e-48 162
Msa0017740 MtrunA17_Chr5g0410961 57.364 129 43 2 1 129 1 117 3.35e-48 162
Msa0017740 MtrunA17_Chr2g0281071 53.901 141 50 4 1 140 1 127 6.15e-48 162
Msa0017740 MtrunA17_Chr3g0131121 51.007 149 60 3 1 148 1 137 7.30e-48 160
Msa0017740 MtrunA17_Chr1g0167661 57.364 129 43 2 1 129 1 117 8.51e-48 159
Msa0017740 MtrunA17_Chr6g0453471 52.532 158 55 5 1 150 1 146 1.07e-47 162
Msa0017740 MtrunA17_Chr7g0275911 56.250 128 44 2 1 128 1 116 2.42e-47 158
Msa0017740 MtrunA17_Chr7g0217741 50.331 151 62 3 1 150 1 139 4.79e-47 159
Msa0017740 MtrunA17_Chr7g0274581 55.469 128 45 2 1 128 1 116 8.29e-47 155
Msa0017740 MtrunA17_Chr5g0434571 38.683 243 121 7 1 242 37 252 1.73e-46 159
Msa0017740 MtrunA17_Chr7g0261281 55.469 128 45 2 1 128 1 116 3.10e-46 155
Msa0017740 MtrunA17_Chr8g0387421 55.469 128 45 2 1 128 1 116 3.83e-46 157
Msa0017740 MtrunA17_Chr4g0070611 36.585 246 113 6 1 238 1 211 3.91e-46 156
Msa0017740 MtrunA17_Chr4g0058631 48.193 166 60 6 1 152 1 154 5.37e-46 157
Msa0017740 MtrunA17_Chr4g0070641 48.750 160 62 4 1 160 1 140 5.53e-46 152
Msa0017740 MtrunA17_Chr8g0342521 46.703 182 78 6 1 176 1 169 8.77e-46 156
Msa0017740 MtrunA17_Chr8g0385321 53.846 130 48 2 1 130 1 118 9.45e-46 155
Msa0017740 MtrunA17_Chr4g0057031 51.799 139 53 3 1 139 1 125 1.78e-45 154
Msa0017740 MtrunA17_Chr7g0270891 52.055 146 55 4 1 143 1 134 2.49e-45 156
Msa0017740 MtrunA17_Chr8g0342541 45.087 173 68 4 1 169 1 150 2.85e-45 155
Msa0017740 MtrunA17_Chr1g0193371 49.315 146 59 3 1 143 1 134 3.98e-45 155
Msa0017740 MtrunA17_Chr7g0228891 50.000 148 59 4 1 145 1 136 4.15e-45 152
Msa0017740 MtrunA17_Chr4g0042671 55.469 128 45 2 1 128 1 116 4.95e-45 156
Msa0017740 MtrunA17_Chr5g0395281 49.080 163 65 4 1 163 1 145 5.17e-45 153
Msa0017740 MtrunA17_Chr4g0060721 55.469 128 45 2 1 128 2 117 5.31e-45 154
Msa0017740 MtrunA17_Chr8g0349261 53.435 131 49 2 1 130 1 120 8.81e-45 152
Msa0017740 MtrunA17_Chr4g0022901 45.783 166 77 3 1 165 1 154 1.82e-44 151
Msa0017740 MtrunA17_Chr5g0397231 38.565 223 112 5 1 218 1 203 1.92e-44 153
Msa0017740 MtrunA17_Chr1g0193801 50.685 146 57 4 1 143 1 134 1.93e-44 154
Msa0017740 MtrunA17_Chr2g0330041 52.308 130 50 2 1 130 1 118 2.27e-44 154
Msa0017740 MtrunA17_Chr8g0342481 51.538 130 52 1 1 130 1 119 2.34e-44 154
Msa0017740 MtrunA17_Chr5g0435101 44.848 165 78 3 3 166 2 154 4.00e-44 148
Msa0017740 MtrunA17_Chr7g0254411 55.469 128 45 2 1 128 1 116 4.13e-44 152
Msa0017740 MtrunA17_Chr4g0068061 51.852 135 53 2 1 135 1 123 5.75e-44 151
Msa0017740 MtrunA17_Chr2g0311221 57.025 121 40 2 2 122 4 112 1.39e-43 150
Msa0017740 MtrunA17_Chr3g0110351 53.906 128 47 2 1 128 1 116 1.81e-43 149
Msa0017740 MtrunA17_Chr6g0453211 57.377 122 40 2 1 122 1 110 2.10e-43 149
Msa0017740 MtrunA17_Chr3g0092401 54.688 128 46 2 1 128 2 117 3.19e-43 149
Msa0017740 MtrunA17_Chr3g0117091 51.163 129 51 2 1 129 1 117 3.29e-43 150
Msa0017740 MtrunA17_Chr1g0211161 48.630 146 60 4 3 145 4 137 4.62e-43 146
Msa0017740 MtrunA17_Chr2g0309911 51.471 136 52 3 6 141 5 126 4.91e-43 148
Msa0017740 MtrunA17_Chr4g0022931 52.713 129 48 3 1 128 1 117 1.36e-42 146
Msa0017740 MtrunA17_Chr4g0022891 56.000 125 43 2 1 125 1 113 3.31e-42 144
Msa0017740 MtrunA17_Chr2g0323351 51.163 129 51 2 1 129 1 117 3.39e-42 144
Msa0017740 MtrunA17_Chr7g0271241 53.719 121 44 2 1 121 1 109 1.96e-41 146
Msa0017740 MtrunA17_Chr4g0022911 42.778 180 84 5 1 177 1 164 8.16e-41 142
Msa0017740 MtrunA17_Chr3g0121241 49.600 125 51 2 5 129 35 147 1.23e-39 139
Msa0017740 MtrunA17_Chr1g0194951 49.231 130 54 2 1 130 1 118 4.80e-39 139
Msa0017740 MtrunA17_Chr7g0269831 51.538 130 51 2 1 130 1 118 1.14e-37 135
Msa0017740 MtrunA17_Chr6g0450101 49.231 130 52 3 1 128 1 118 1.26e-37 131
Msa0017740 MtrunA17_Chr7g0228231 49.231 130 52 3 1 128 1 118 1.91e-37 131
Msa0017740 MtrunA17_Chr3g0080861 51.240 121 47 2 12 132 37 145 2.12e-37 137
Msa0017740 MtrunA17_Chr3g0088461 49.587 121 49 2 8 128 18 126 2.74e-37 134
Msa0017740 MtrunA17_Chr4g0022881 43.709 151 73 2 1 151 1 139 3.84e-37 131
Msa0017740 MtrunA17_Chr1g0203441 47.368 133 57 3 1 132 1 121 9.35e-37 131
Msa0017740 MtrunA17_Chr5g0440761 38.725 204 99 5 12 203 12 201 1.22e-36 130
Msa0017740 MtrunA17_Chr4g0044421 49.219 128 52 3 3 129 2 117 1.29e-36 128
Msa0017740 MtrunA17_Chr2g0328771 47.863 117 49 2 12 128 20 124 1.68e-36 131
Msa0017740 MtrunA17_Chr5g0440781 41.358 162 81 3 12 173 12 159 1.79e-36 128
Msa0017740 MtrunA17_Chr1g0209661 50.000 120 48 2 8 127 23 130 2.67e-36 131
Msa0017740 MtrunA17_Chr3g0099131 45.185 135 58 3 12 146 41 159 3.30e-36 134
Msa0017740 MtrunA17_Chr4g0032401 49.153 118 48 2 11 128 16 121 4.20e-36 130
Msa0017740 MtrunA17_Chr5g0441141 41.358 162 81 3 12 173 12 159 7.78e-36 129
Msa0017740 MtrunA17_Chr1g0194301 48.333 120 50 2 8 127 29 136 9.28e-36 129
Msa0017740 MtrunA17_Chr1g0186061 48.333 120 50 2 8 127 16 123 2.92e-35 127
Msa0017740 MtrunA17_Chr5g0417821 49.153 118 48 2 12 129 7 112 4.07e-35 127
Msa0017740 MtrunA17_Chr4g0042611 58.427 89 36 1 1 89 1 88 6.79e-35 120
Msa0017740 MtrunA17_Chr6g0470971 48.387 124 52 2 4 127 6 117 8.92e-35 126
Msa0017740 MtrunA17_Chr8g0343831 48.438 128 50 3 1 128 1 112 1.22e-34 125
Msa0017740 MtrunA17_Chr1g0194291 50.000 116 46 2 12 127 21 124 1.91e-34 125
Msa0017740 MtrunA17_Chr8g0354661 47.934 121 51 2 12 132 37 145 3.43e-34 129
Msa0017740 MtrunA17_Chr1g0168661 49.167 120 49 2 8 127 17 124 4.19e-34 124
Msa0017740 MtrunA17_Chr4g0068921 52.101 119 45 2 8 126 20 126 5.82e-34 121
Msa0017740 MtrunA17_Chr7g0240821 36.364 209 105 4 16 224 5 185 1.25e-33 122
Msa0017740 MtrunA17_Chr4g0055981 45.802 131 57 3 9 139 52 168 1.82e-33 121
Msa0017740 MtrunA17_Chr2g0322521 48.760 121 50 2 12 132 29 137 3.84e-33 124
Msa0017740 MtrunA17_Chr5g0441131 39.080 174 93 3 12 185 9 169 4.20e-33 119
Msa0017740 MtrunA17_Chr8g0342461 56.044 91 40 0 1 91 1 91 4.25e-33 117
Msa0017740 MtrunA17_Chr5g0434911 46.774 124 54 2 7 130 16 127 5.10e-33 121
Msa0017740 MtrunA17_Chr8g0342511 55.435 92 40 1 1 92 1 91 5.59e-33 116
Msa0017740 MtrunA17_Chr8g0342471 56.044 91 40 0 1 91 1 91 1.21e-32 116
Msa0017740 MtrunA17_Chr5g0434931 47.899 119 50 2 12 130 35 141 1.26e-32 120
Msa0017740 MtrunA17_Chr2g0293911 51.261 119 46 2 8 126 20 126 1.86e-32 121
Msa0017740 MtrunA17_Chr1g0180391 48.718 117 48 2 12 128 19 123 2.77e-32 118
Msa0017740 MtrunA17_Chr1g0192411 44.697 132 61 2 1 132 1 120 3.19e-32 122
Msa0017740 MtrunA17_Chr8g0342531 53.846 91 41 1 1 91 1 90 1.60e-31 114
Msa0017740 MtrunA17_Chr1g0154031 45.455 121 54 2 12 132 76 184 1.63e-31 120
Msa0017740 MtrunA17_Chr7g0220341 47.934 121 49 3 12 130 25 133 3.70e-31 116
Msa0017740 MtrunA17_Chr8g0360111 49.558 113 45 2 12 124 25 125 5.12e-31 115
Msa0017740 MtrunA17_Chr7g0228991 47.899 119 50 2 12 130 29 135 5.13e-31 116
Msa0017740 MtrunA17_Chr5g0434831 46.610 118 51 2 12 129 7 112 9.52e-31 113
Msa0017740 MtrunA17_Chr2g0327821 46.218 119 52 2 9 127 3 109 3.62e-30 113
Msa0017740 MtrunA17_Chr5g0434841 46.610 118 51 2 12 129 20 125 4.03e-30 115
Msa0017740 MtrunA17_Chr2g0294811 55.056 89 39 1 1 89 1 88 4.98e-30 109
Msa0017740 MtrunA17_Chr7g0247131 57.143 84 25 1 45 128 10 82 1.74e-28 109
Msa0017740 MtrunA17_Chr2g0323321 47.475 99 50 2 1 99 1 97 3.77e-28 103
Msa0017740 MtrunA17_Chr4g0030881 43.651 126 52 3 9 127 4 117 5.29e-28 107
Msa0017740 MtrunA17_Chr8g0334881 45.000 120 53 3 8 126 6 113 7.83e-28 108
Msa0017740 MtrunA17_Chr5g0395221 51.685 89 42 1 1 89 1 88 2.66e-26 98.6
Msa0017740 MtrunA17_Chr4g0008551 42.748 131 55 4 14 144 38 148 6.96e-26 103
Msa0017740 MtrunA17_Chr3g0099141 52.439 82 38 1 8 89 36 116 8.22e-26 99.0
Msa0017740 MtrunA17_Chr5g0425591 55.263 76 33 1 12 87 9 83 3.41e-25 95.9
Msa0017740 MtrunA17_Chr5g0401731 43.860 114 51 3 14 127 15 115 9.98e-25 100
Msa0017740 MtrunA17_Chr4g0053431 44.737 114 50 3 14 127 5 105 1.16e-24 99.4
Msa0017740 MtrunA17_Chr4g0013361 42.241 116 54 3 12 126 10 113 1.58e-24 99.4
Msa0017740 MtrunA17_Chr3g0133601 43.220 118 54 3 14 131 37 141 7.00e-24 96.3
Msa0017740 MtrunA17_Chr6g0454921 44.737 114 50 3 14 127 15 115 1.90e-23 94.7
Msa0017740 MtrunA17_Chr6g0453751 46.988 83 37 1 12 87 20 102 1.18e-21 87.8
Msa0017740 MtrunA17_Chr5g0434901 53.165 79 26 1 47 125 7 74 2.39e-21 86.7
Msa0017740 MtrunA17_Chr7g0229131 45.977 87 36 1 45 131 4 79 4.60e-21 87.4
Msa0017740 MtrunA17_Chr7g0229101 50.617 81 29 1 45 125 4 73 2.28e-20 86.3
Msa0017740 MtrunA17_Chr6g0460661 31.902 163 92 5 11 170 13 159 3.49e-20 84.7
Msa0017740 MtrunA17_Chr3g0093811 47.423 97 37 2 35 128 1 86 5.01e-20 86.7
Msa0017740 MtrunA17_Chr5g0429661 36.842 114 59 3 14 127 122 222 2.96e-19 85.9
Msa0017740 MtrunA17_Chr6g0480581 38.938 113 56 3 14 126 4 103 3.78e-19 84.0
Msa0017740 MtrunA17_Chr4g0058991 38.983 118 55 5 12 127 207 309 5.41e-19 85.9
Msa0017740 MtrunA17_Chr7g0238631 37.415 147 71 4 14 152 113 246 6.41e-19 85.9
Msa0017740 MtrunA17_Chr5g0417621 36.090 133 70 4 11 141 131 250 1.12e-18 85.1
Msa0017740 MtrunA17_Chr5g0437321 35.971 139 76 3 14 152 19 144 1.14e-18 83.6
Msa0017740 MtrunA17_Chr3g0117511 35.433 127 67 4 3 127 170 283 2.04e-18 84.3
Msa0017740 MtrunA17_Chr6g0460671 30.108 186 106 7 14 188 99 271 7.31e-18 82.0
Msa0017740 MtrunA17_Chr4g0042501 37.719 114 58 3 14 127 105 205 3.81e-17 80.5
Msa0017740 MtrunA17_Chr7g0228401 35.156 128 50 4 17 122 258 374 6.70e-17 80.1
Msa0017740 MtrunA17_Chr7g0228531 38.793 116 57 4 12 127 218 319 1.13e-16 79.0
Msa0017740 MtrunA17_Chr3g0139671 35.652 115 61 3 14 128 85 186 3.24e-16 78.2
Msa0017740 MtrunA17_Chr5g0397841 39.815 108 52 3 14 121 110 204 2.96e-15 75.1
Msa0017740 MtrunA17_Chr1g0193901 52.459 61 27 2 10 69 9 68 5.91e-15 69.3
Msa0017740 MtrunA17_Chr1g0193891 52.459 61 27 2 10 69 9 68 5.91e-15 69.3
Msa0017740 MtrunA17_Chr1g0193871 52.459 61 27 2 10 69 9 68 5.91e-15 69.3
Msa0017740 MtrunA17_Chr1g0193881 52.459 61 27 2 10 69 9 68 5.91e-15 69.3
Msa0017740 MtrunA17_Chr3g0125801 36.667 120 63 3 8 127 10 116 8.44e-15 72.8
Msa0017740 MtrunA17_Chr1g0157731 33.913 115 63 3 14 128 91 192 1.06e-14 73.9
Msa0017740 MtrunA17_Chr7g0254261 37.719 114 58 3 14 127 89 189 1.08e-14 72.8
Msa0017740 MtrunA17_Chr1g0177901 43.243 74 31 1 49 122 27 89 6.45e-14 68.9
Msa0017740 MtrunA17_Chr5g0416341 36.036 111 58 3 17 127 29 126 9.58e-14 70.5
Msa0017740 MtrunA17_Chr7g0238651 33.645 107 59 2 17 122 10 105 1.12e-13 70.1
Msa0017740 MtrunA17_Chr7g0233061 34.862 109 56 3 14 122 180 273 1.16e-13 70.1
Msa0017740 MtrunA17_Chr7g0247141 51.064 47 23 0 1 47 1 47 3.98e-13 62.8
Msa0017740 MtrunA17_Chr8g0362231 35.135 111 59 3 17 127 25 122 6.92e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017740 AT5G57620.1 64.865 148 38 2 1 148 1 134 2.00e-64 204
Msa0017740 AT3G49690.1 70.543 129 27 1 1 129 1 118 3.81e-63 201
Msa0017740 AT4G37780.1 68.462 130 30 1 1 130 1 119 1.57e-62 199
Msa0017740 AT2G36890.1 66.917 133 33 1 1 133 1 122 1.66e-62 199
Msa0017740 AT2G36890.2 66.917 133 33 1 1 133 42 163 2.59e-62 199
Msa0017740 AT5G65790.1 70.543 129 27 1 1 129 1 118 2.99e-62 200
Msa0017740 AT5G23000.1 66.667 129 32 1 1 129 1 118 6.32e-61 196
Msa0017740 AT5G16770.4 42.623 244 114 9 1 240 1 222 2.76e-53 176
Msa0017740 AT5G16770.3 42.623 244 114 9 1 240 1 222 2.76e-53 176
Msa0017740 AT5G16770.1 42.623 244 114 9 1 240 1 222 8.57e-53 175
Msa0017740 AT5G16770.2 42.623 244 114 9 1 240 1 222 8.57e-53 175
Msa0017740 AT3G23250.1 52.047 171 67 4 1 169 1 158 2.79e-52 172
Msa0017740 AT5G56110.1 62.500 128 36 2 1 128 1 116 2.83e-52 173
Msa0017740 AT3G02940.2 54.110 146 52 4 1 143 1 134 1.04e-49 166
Msa0017740 AT3G01140.2 51.282 156 62 3 1 156 1 142 1.28e-49 167
Msa0017740 AT3G02940.1 54.110 146 52 4 1 143 1 134 2.26e-49 166
Msa0017740 AT3G02940.3 54.110 146 52 4 1 143 1 134 2.26e-49 166
Msa0017740 AT4G28110.1 57.143 133 44 3 1 132 1 121 3.94e-49 164
Msa0017740 AT4G05100.1 54.610 141 49 4 1 140 1 127 6.96e-49 164
Msa0017740 AT4G21440.1 52.857 140 52 3 1 140 1 126 2.22e-48 164
Msa0017740 AT5G15310.4 56.589 129 44 2 1 129 1 117 3.30e-48 160
Msa0017740 AT2G31180.1 57.812 128 42 2 1 128 1 116 3.92e-48 160
Msa0017740 AT2G16720.1 54.615 130 47 2 1 130 1 118 4.94e-48 160
Msa0017740 AT1G22640.1 54.615 130 47 2 1 130 1 118 5.88e-48 160
Msa0017740 AT4G38620.1 45.882 170 77 4 1 167 1 158 1.19e-47 160
Msa0017740 AT5G15310.1 56.589 129 44 2 1 129 1 117 1.27e-47 161
Msa0017740 AT5G15310.2 50.641 156 63 3 1 156 1 142 1.63e-47 160
Msa0017740 AT1G16490.1 45.641 195 77 5 2 196 4 169 1.71e-47 159
Msa0017740 AT3G28470.1 59.836 122 37 2 1 122 1 110 2.29e-47 160
Msa0017740 AT3G61250.1 40.845 213 102 5 1 203 1 199 3.06e-47 159
Msa0017740 AT4G09460.1 54.615 130 47 2 1 130 1 118 5.42e-47 157
Msa0017740 AT1G34670.1 50.633 158 62 4 1 156 1 144 5.83e-47 160
Msa0017740 AT3G47600.1 58.594 128 41 2 1 128 1 116 5.98e-47 159
Msa0017740 AT5G62470.2 50.625 160 63 3 1 160 1 144 1.09e-46 159
Msa0017740 AT4G34990.1 50.327 153 61 4 1 150 1 141 1.16e-46 157
Msa0017740 AT3G01140.1 50.327 153 62 3 4 156 47 185 1.29e-46 160
Msa0017740 AT1G06180.1 57.812 128 42 2 1 128 1 116 2.61e-46 155
Msa0017740 AT1G35515.1 47.337 169 69 5 1 167 1 151 2.61e-46 154
Msa0017740 AT1G56160.1 56.693 127 43 2 2 128 4 118 3.55e-46 156
Msa0017740 AT5G26660.1 51.034 145 56 4 1 142 1 133 3.91e-46 158
Msa0017740 AT1G79180.1 56.693 127 43 2 2 128 4 118 4.22e-46 156
Msa0017740 AT4G17785.2 50.658 152 60 4 1 151 1 138 4.32e-46 157
Msa0017740 AT4G17785.1 50.658 152 60 4 1 151 1 138 5.62e-46 157
Msa0017740 AT5G60890.1 56.250 128 44 2 1 128 1 116 9.57e-46 155
Msa0017740 AT4G22680.1 48.125 160 58 4 1 149 1 146 1.69e-45 154
Msa0017740 AT3G62610.1 56.250 128 44 2 1 128 1 116 2.13e-45 155
Msa0017740 AT1G74650.1 51.020 147 60 2 1 147 1 135 2.35e-45 155
Msa0017740 AT1G63910.1 54.688 128 46 2 1 128 1 116 2.46e-45 156
Msa0017740 AT5G10280.1 51.389 144 56 3 1 144 1 130 2.90e-45 155
Msa0017740 AT4G12350.1 39.352 216 94 4 1 216 1 179 2.96e-45 154
Msa0017740 AT4G01680.3 52.448 143 53 4 1 140 1 131 3.80e-45 152
Msa0017740 AT5G61420.2 45.355 183 76 6 1 180 1 162 4.03e-45 155
Msa0017740 AT1G57560.2 49.660 147 59 4 1 144 1 135 1.09e-44 152
Msa0017740 AT1G18570.1 56.923 130 43 3 1 129 1 118 1.12e-44 154
Msa0017740 AT3G28910.1 57.812 128 42 2 1 128 1 116 1.24e-44 153
Msa0017740 AT4G01680.1 52.448 143 53 4 1 140 1 131 1.39e-44 153
Msa0017740 AT5G62470.1 50.625 160 62 4 1 160 1 143 1.43e-44 154
Msa0017740 AT5G65230.1 51.389 144 56 3 1 144 1 130 1.85e-44 152
Msa0017740 AT5G49330.1 54.615 130 47 2 1 130 1 118 1.92e-44 153
Msa0017740 AT1G57560.1 51.049 143 55 4 1 140 1 131 2.00e-44 152
Msa0017740 AT1G08810.1 55.469 128 45 2 1 128 1 116 2.09e-44 151
Msa0017740 AT3G13890.2 52.308 130 50 2 1 130 1 118 2.14e-44 154
Msa0017740 AT1G09540.1 53.125 128 48 2 1 128 1 116 1.46e-43 151
Msa0017740 AT5G16600.1 52.414 145 54 4 1 142 1 133 1.79e-43 150
Msa0017740 AT5G14340.1 53.906 128 47 2 1 128 13 128 1.97e-43 149
Msa0017740 AT5G07690.1 52.055 146 55 4 1 143 1 134 2.79e-43 150
Msa0017740 AT1G66230.1 44.118 170 81 3 1 170 1 156 4.58e-43 148
Msa0017740 AT5G54230.1 55.039 129 46 2 1 129 1 117 9.57e-43 148
Msa0017740 AT2G47460.1 51.493 134 53 2 1 134 1 122 1.09e-42 149
Msa0017740 AT3G12820.1 53.543 127 47 2 3 129 5 119 1.99e-42 145
Msa0017740 AT3G12720.1 51.471 136 52 3 6 141 16 137 2.84e-42 147
Msa0017740 AT3G13540.1 51.587 126 49 2 4 129 15 128 3.52e-42 145
Msa0017740 AT5G62320.1 50.746 134 49 2 2 129 3 125 3.60e-42 144
Msa0017740 AT1G74080.1 45.399 163 75 3 1 163 1 149 3.91e-42 147
Msa0017740 AT5G07700.1 45.604 182 81 6 1 179 1 167 8.91e-42 146
Msa0017740 AT5G07700.2 45.604 182 81 6 1 179 1 167 8.91e-42 146
Msa0017740 AT3G13890.1 48.921 139 50 3 1 130 1 127 2.24e-41 146
Msa0017740 AT4G01680.2 48.387 155 53 5 1 140 1 143 3.59e-41 145
Msa0017740 AT1G79180.2 45.000 160 43 3 2 128 4 151 1.74e-39 140
Msa0017740 AT1G74430.1 49.219 128 53 2 1 128 1 116 4.29e-38 135
Msa0017740 AT3G08500.1 52.066 121 46 2 8 128 26 134 5.93e-38 136
Msa0017740 AT3G27920.1 46.099 141 63 3 8 147 10 138 8.86e-38 133
Msa0017740 AT2G32460.2 50.413 121 48 2 12 132 6 114 1.70e-37 137
Msa0017740 AT5G14750.1 52.586 116 43 2 13 128 17 120 1.74e-37 131
Msa0017740 AT5G35550.1 40.000 175 87 4 9 179 11 171 1.92e-37 133
Msa0017740 AT1G18710.1 48.438 128 54 2 1 128 1 116 1.94e-37 133
Msa0017740 AT2G32460.1 50.413 121 48 2 12 132 18 126 2.11e-37 137
Msa0017740 AT5G40350.1 52.101 119 45 2 11 129 16 122 2.39e-37 131
Msa0017740 AT4G26930.1 42.690 171 78 4 12 178 19 173 3.40e-37 135
Msa0017740 AT3G27810.1 52.542 118 44 2 11 128 19 124 3.67e-37 131
Msa0017740 AT5G52600.1 51.200 125 45 3 7 127 3 115 5.63e-37 130
Msa0017740 AT5G12870.1 49.580 119 48 2 10 128 16 122 7.19e-37 132
Msa0017740 AT3G01530.1 49.573 117 47 2 12 128 25 129 1.13e-36 129
Msa0017740 AT5G40330.1 49.593 123 50 2 9 131 9 119 1.20e-36 129
Msa0017740 AT5G06100.1 48.800 125 52 2 8 132 28 140 2.51e-36 134
Msa0017740 AT5G06100.5 48.800 125 52 2 8 132 28 140 7.43e-36 134
Msa0017740 AT5G06100.2 48.800 125 52 2 8 132 28 140 7.43e-36 134
Msa0017740 AT5G06100.3 48.800 125 52 2 8 132 28 140 7.43e-36 134
Msa0017740 AT5G06100.4 48.800 125 52 2 8 132 28 140 7.43e-36 134
Msa0017740 AT3G11440.2 47.107 121 52 2 12 132 41 149 1.37e-35 132
Msa0017740 AT5G55020.1 47.934 121 51 2 12 132 26 134 2.33e-35 132
Msa0017740 AT3G11440.3 47.107 121 52 2 12 132 41 149 6.76e-35 131
Msa0017740 AT3G11440.4 47.107 121 52 2 12 132 41 149 6.76e-35 131
Msa0017740 AT3G11440.1 47.107 121 52 2 12 132 41 149 6.76e-35 131
Msa0017740 AT4G13480.1 48.201 139 53 3 9 147 3 122 6.92e-35 126
Msa0017740 AT1G48000.1 50.000 116 46 2 11 126 31 134 7.11e-35 125
Msa0017740 AT3G48920.1 48.333 120 50 2 9 128 15 122 2.69e-34 124
Msa0017740 AT5G52260.1 43.023 172 81 4 9 175 9 168 7.24e-34 124
Msa0017740 AT1G25340.1 50.435 115 45 2 13 127 19 121 1.24e-33 123
Msa0017740 AT2G47190.1 49.138 116 47 2 12 127 20 123 1.41e-33 123
Msa0017740 AT3G24310.1 50.420 119 47 2 9 127 15 121 1.41e-33 123
Msa0017740 AT1G68320.1 48.305 118 49 2 10 127 17 122 2.25e-33 123
Msa0017740 AT2G26960.1 45.968 124 55 2 9 132 17 128 3.24e-33 125
Msa0017740 AT4G25560.1 48.333 120 50 2 10 129 8 115 7.01e-33 121
Msa0017740 AT3G30210.1 50.000 114 45 2 13 126 28 129 2.20e-31 117
Msa0017740 AT3G06490.1 50.420 119 47 2 8 126 15 121 3.25e-31 118
Msa0017740 AT1G66370.1 40.667 150 73 3 1 150 1 134 4.18e-31 116
Msa0017740 AT5G49620.1 50.435 115 45 2 12 126 26 128 1.85e-30 115
Msa0017740 AT5G49620.2 49.153 118 56 2 12 126 26 142 2.54e-30 115
Msa0017740 AT1G66380.1 48.276 116 48 2 12 127 8 111 2.87e-29 108
Msa0017740 AT1G56650.1 44.286 140 65 3 12 151 8 134 2.94e-29 111
Msa0017740 AT5G59780.3 43.697 119 55 2 9 127 5 111 1.42e-28 109
Msa0017740 AT5G26660.2 50.000 102 37 3 44 142 12 102 1.83e-28 110
Msa0017740 AT1G25340.2 46.957 115 44 3 13 127 19 116 2.37e-28 109
Msa0017740 AT1G25340.3 46.957 115 44 3 13 127 19 116 2.82e-28 110
Msa0017740 AT3G53200.1 44.538 119 54 2 9 127 6 112 2.90e-28 108
Msa0017740 AT3G46130.1 43.697 119 55 2 9 127 6 112 9.57e-28 107
Msa0017740 AT1G66390.1 47.414 116 49 2 12 127 8 111 2.32e-27 106
Msa0017740 AT5G14750.3 53.333 90 28 2 39 128 11 86 5.85e-27 103
Msa0017740 AT3G47600.2 59.036 83 23 1 46 128 39 110 2.10e-26 105
Msa0017740 AT3G60460.1 42.063 126 58 4 9 133 8 119 2.92e-26 104
Msa0017740 AT5G35550.2 39.310 145 71 3 39 179 43 174 1.20e-25 102
Msa0017740 AT3G27810.2 54.217 83 27 1 46 128 4 75 2.03e-25 99.4
Msa0017740 AT5G40350.2 53.571 84 28 1 46 129 5 77 2.58e-25 99.0
Msa0017740 AT2G23290.1 46.491 114 48 3 14 127 13 113 5.96e-25 101
Msa0017740 AT3G50060.1 42.537 134 63 4 14 146 6 126 3.12e-24 99.4
Msa0017740 AT2G26950.1 38.261 115 59 2 9 123 13 115 3.75e-24 100
Msa0017740 AT3G12820.2 53.086 81 27 1 49 129 2 71 1.34e-23 95.1
Msa0017740 AT3G27785.1 42.017 119 56 3 9 127 184 289 1.88e-23 99.0
Msa0017740 AT1G18960.1 43.478 115 50 3 14 128 10 109 2.48e-23 97.1
Msa0017740 AT5G67300.1 43.860 114 51 3 14 127 6 106 3.26e-23 96.7
Msa0017740 AT4G37260.1 42.982 114 52 3 14 127 13 113 3.36e-23 96.7
Msa0017740 AT3G53200.2 51.190 84 30 1 44 127 7 79 3.37e-23 94.4
Msa0017740 AT3G46130.3 49.398 83 31 1 45 127 9 80 3.83e-22 92.0
Msa0017740 AT5G59780.2 48.810 84 32 1 44 127 18 90 5.85e-22 91.3
Msa0017740 AT3G46130.4 48.810 84 32 1 44 127 18 90 7.08e-22 91.7
Msa0017740 AT1G66380.3 54.217 83 27 1 45 127 7 78 4.63e-21 85.9
Msa0017740 AT3G55730.1 35.758 165 90 5 14 176 56 206 1.28e-20 90.5
Msa0017740 AT1G69560.1 33.140 172 88 5 9 166 102 260 1.57e-20 89.7
Msa0017740 AT1G69560.2 33.140 172 88 5 9 166 118 276 1.63e-20 89.7
Msa0017740 AT5G40360.1 38.136 118 60 3 9 126 153 257 2.74e-20 89.4
Msa0017740 AT1G22640.3 52.778 72 23 1 59 130 1 61 3.86e-20 85.9
Msa0017740 AT3G23250.2 45.133 113 48 3 59 169 1 101 6.80e-20 85.9
Msa0017740 AT3G09230.1 38.793 116 58 3 14 129 55 157 4.67e-19 86.3
Msa0017740 AT2G39880.1 41.176 119 56 4 9 127 46 150 7.46e-19 85.5
Msa0017740 AT1G26780.1 35.461 141 73 5 14 152 98 222 9.54e-19 84.0
Msa0017740 AT2G25230.1 37.288 118 61 3 9 126 21 125 1.09e-18 82.8
Msa0017740 AT5G58850.1 35.965 114 60 3 14 127 105 205 1.20e-18 85.1
Msa0017740 AT1G66380.2 44.828 87 46 2 12 97 8 93 1.38e-18 79.3
Msa0017740 AT1G26780.2 35.461 141 73 5 14 152 98 222 1.74e-18 84.3
Msa0017740 AT4G18770.1 34.167 120 66 3 9 128 212 318 2.26e-18 84.3
Msa0017740 AT1G17950.1 37.500 136 70 5 14 148 5 126 2.72e-18 82.0
Msa0017740 AT3G09370.2 35.616 146 75 4 14 155 135 265 2.86e-18 84.3
Msa0017740 AT3G09370.1 35.616 146 75 4 14 155 130 260 3.03e-18 84.3
Msa0017740 AT3G09370.3 35.616 146 75 4 14 155 143 273 3.21e-18 84.3
Msa0017740 AT5G11050.1 35.088 114 61 3 14 127 105 205 5.43e-18 83.2
Msa0017740 AT5G17800.1 38.596 114 57 3 14 127 93 193 1.98e-17 80.9
Msa0017740 AT1G71030.2 43.590 78 33 1 52 129 5 71 9.51e-17 76.3
Msa0017740 AT1G71030.1 43.590 78 33 1 52 129 19 85 1.12e-16 76.6
Msa0017740 AT5G02320.1 36.522 115 60 3 14 128 127 228 1.65e-16 79.3
Msa0017740 AT5G02320.2 36.522 115 60 3 14 128 127 228 1.65e-16 79.3
Msa0017740 AT5G02320.3 36.522 115 60 3 14 128 67 168 2.15e-16 79.0
Msa0017740 AT5G14750.4 48.571 70 25 1 59 128 1 59 2.20e-16 74.3
Msa0017740 AT5G14750.2 48.571 70 25 1 59 128 1 59 2.20e-16 74.3
Msa0017740 AT1G73410.1 40.351 114 55 3 14 127 6 106 2.55e-15 73.9
Msa0017740 AT4G33450.1 34.400 125 64 4 3 127 13 119 2.73e-15 73.9
Msa0017740 AT1G73410.2 40.351 114 55 3 14 127 6 106 3.31e-15 72.8
Msa0017740 AT4G32730.1 33.913 115 63 3 14 128 87 188 6.60e-15 74.7
Msa0017740 AT4G32730.5 33.913 115 63 3 14 128 87 188 6.78e-15 74.7
Msa0017740 AT4G32730.4 33.913 115 63 3 14 128 87 188 6.78e-15 74.7
Msa0017740 AT4G32730.3 33.913 115 63 3 14 128 87 188 6.78e-15 74.7
Msa0017740 AT4G32730.2 33.913 115 63 3 14 128 87 188 6.78e-15 74.7
Msa0017740 AT2G02820.2 36.937 111 57 3 17 127 33 130 1.70e-14 73.2
Msa0017740 AT2G02820.1 36.937 111 57 3 17 127 33 130 1.70e-14 73.2
Msa0017740 AT2G02820.3 36.937 111 57 3 17 127 33 130 1.78e-14 72.4
Msa0017740 AT5G11510.3 32.174 115 65 3 14 128 81 182 2.04e-14 73.2
Msa0017740 AT5G11510.1 32.174 115 65 3 14 128 81 182 2.04e-14 73.2
Msa0017740 AT5G11510.4 32.174 115 65 3 14 128 81 182 2.04e-14 73.2
Msa0017740 AT5G11510.5 32.174 115 65 3 14 128 81 182 2.08e-14 73.2
Msa0017740 AT5G11510.2 32.174 115 65 3 14 128 81 182 2.12e-14 73.2
Msa0017740 AT1G14350.2 34.375 128 66 4 17 144 28 137 2.72e-14 72.4
Msa0017740 AT1G14350.1 34.375 128 66 4 17 144 28 137 2.72e-14 72.4
Msa0017740 AT5G40430.1 33.051 118 65 3 9 126 49 152 5.08e-14 70.5
Msa0017740 AT3G29020.1 32.174 115 65 3 14 128 65 166 7.98e-14 69.3
Msa0017740 AT3G29020.2 32.174 115 65 3 14 128 67 168 1.37e-13 69.7
Msa0017740 AT2G37630.1 28.571 182 97 7 17 177 7 176 4.08e-13 68.9
Msa0017740 AT4G00540.2 32.773 119 66 3 12 128 101 207 1.61e-12 67.0
Msa0017740 AT4G00540.1 32.773 119 66 3 12 128 99 205 2.00e-12 67.0

Find 52 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATCATTGATGGATTT+TGG 0.132955 1_1:-29641863 Msa0017740:CDS
CTCATGGCACTGTTGGAAAT+TGG 0.220126 1_1:-29643975 Msa0017740:CDS
ACTTTATTGTCTAGCATAAT+TGG 0.238985 1_1:+29642013 None:intergenic
AAAACTGAAGAAGAAGATTT+TGG 0.243833 1_1:-29642179 Msa0017740:CDS
CAGCAATATTATTAATCCTT+TGG 0.356887 1_1:-29641945 Msa0017740:CDS
AAGCCTCCATGTTTGATATC+TGG 0.357484 1_1:+29643218 None:intergenic
GATGCTGTAGTATCAGAAAT+TGG 0.363867 1_1:-29641977 Msa0017740:CDS
TTTCACCCTCTATTCTCAAA+TGG 0.370485 1_1:-29643171 Msa0017740:CDS
TCAAGCTGGTGATGAATCTA+TGG 0.374214 1_1:-29641882 Msa0017740:CDS
GTGGGAAGAGTTGCCGTCTA+AGG 0.387864 1_1:-29643259 Msa0017740:CDS
TACAACTTAATTAAATAAGT+TGG 0.401170 1_1:+29643128 None:intergenic
CTTGCAACTCATGGCACTGT+TGG 0.446578 1_1:-29643982 Msa0017740:CDS
TTGAGTGTTGCATCTTCATC+CGG 0.446655 1_1:+29644012 None:intergenic
TGAGTTAGTGATGGAGTTGA+AGG 0.446977 1_1:+29642109 None:intergenic
GCCAGGTAGTTTAGATGCTA+TGG 0.455877 1_1:+29642237 None:intergenic
TGCTACCCATTTGAGAATAG+AGG 0.456147 1_1:+29643165 None:intergenic
TGAATCTATGGAATCATTGA+TGG 0.458518 1_1:-29641870 Msa0017740:CDS
TTCACCCTCTATTCTCAAAT+GGG 0.465064 1_1:-29643170 Msa0017740:CDS
ACATCATTGTCTGTTCTGCC+AGG 0.476737 1_1:+29642220 None:intergenic
GATAATTCAGCCACCTTAGA+CGG 0.491836 1_1:+29643246 None:intergenic
TCTATTCTCAAATGGGTAGC+AGG 0.500149 1_1:-29643163 Msa0017740:CDS
TCTTAACTGCTTTCCTGAGT+GGG 0.511907 1_1:-29641807 Msa0017740:CDS
AGCATAATTGGAAGTGGTGA+AGG 0.515734 1_1:+29642025 None:intergenic
TTGTCTAGCATAATTGGAAG+TGG 0.518920 1_1:+29642019 None:intergenic
AGAATAGAGGGTGAAAATGA+TGG 0.524462 1_1:+29643178 None:intergenic
TAAGAAAGGACCATGGTCTC+CGG 0.525933 1_1:-29644031 Msa0017740:CDS
TGCAAATGGCAGGACTTAAG+AGG 0.526442 1_1:-29643283 Msa0017740:intron
TTGGAACTTTGAGTTAGTGA+TGG 0.526757 1_1:+29642100 None:intergenic
GAGTTAGTGATGGAGTTGAA+GGG 0.551144 1_1:+29642110 None:intergenic
CTGAGGCCAGATATCAAACA+TGG 0.554389 1_1:-29643224 Msa0017740:CDS
TGGCAGGACTTAAGAGGTGT+GGG 0.558861 1_1:-29643277 Msa0017740:intron
AAGAGTTATCTTGCAACTCA+TGG 0.560977 1_1:-29643991 Msa0017740:CDS
GTTGAGTGAGAGAGTAGCCA+TGG 0.563082 1_1:-29644085 Msa0017740:exon
ATCTTAACTGCTTTCCTGAG+TGG 0.564962 1_1:-29641808 Msa0017740:CDS
GACAAAGAGAAAGTTAAGAA+AGG 0.569014 1_1:-29644045 Msa0017740:CDS
TGGAGGCTTCACTGAAGAAG+AGG 0.582932 1_1:-29643204 Msa0017740:CDS
ATGGCAGGACTTAAGAGGTG+TGG 0.587133 1_1:-29643278 Msa0017740:intron
ATAATTGGAAGTGGTGAAGG+TGG 0.597724 1_1:+29642028 None:intergenic
GCTACCCATTTGAGAATAGA+GGG 0.601575 1_1:+29643166 None:intergenic
GCATCTTCATCCGGAGACCA+TGG 0.603078 1_1:+29644021 None:intergenic
TCTTGAGAAATTGACACCAA+AGG 0.604458 1_1:+29641929 None:intergenic
TAACTAAAATCAACCCACTC+AGG 0.606546 1_1:+29641794 None:intergenic
GCCATAGCATCTAAACTACC+TGG 0.606568 1_1:-29642238 Msa0017740:CDS
GGAAGAGTTGCCGTCTAAGG+TGG 0.612402 1_1:-29643256 Msa0017740:CDS
TTGAGTGAGAGAGTAGCCAT+GGG 0.612925 1_1:-29644084 Msa0017740:exon
ACTTTCTCTTTGTCACAACA+AGG 0.613328 1_1:+29644054 None:intergenic
ATTGCAATTCAAGATCAAGC+TGG 0.635582 1_1:-29641896 Msa0017740:CDS
ACAACAAGGAGCTCTTCCCA+TGG 0.643741 1_1:+29644068 None:intergenic
TAAGGTGGCTGAATTATCTG+AGG 0.651967 1_1:-29643241 Msa0017740:CDS
TCATTGACATGATCATCATG+AGG 0.679338 1_1:+29641830 None:intergenic
AGAAAGTTAAGAAAGGACCA+TGG 0.711372 1_1:-29644038 Msa0017740:CDS
AGGCCAGATATCAAACATGG+AGG 0.739482 1_1:-29643221 Msa0017740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAATTACATCA+AGG - chr1_1:29642304-29642323 Msa0017740:intron 10.0%
!! AAAAAGCAAAAAAATAAATT+TGG + chr1_1:29642536-29642555 None:intergenic 10.0%
!!! TTTTTTTAAAATCAAGTTAT+TGG + chr1_1:29643430-29643449 None:intergenic 10.0%
!!! TTTTTTTTTAAATTACATCA+AGG - chr1_1:29642304-29642323 Msa0017740:intron 10.0%
!! AAAAAGCAAAAAAATAAATT+TGG + chr1_1:29642536-29642555 None:intergenic 10.0%
!!! TTTTTTTAAAATCAAGTTAT+TGG + chr1_1:29643430-29643449 None:intergenic 10.0%
!!! TTTTATTTCTATGATTTTCT+TGG - chr1_1:29641999-29642018 Msa0017740:CDS 15.0%
!! TAAGATAGATTAAATTTAAC+AGG + chr1_1:29642393-29642412 None:intergenic 15.0%
!! TTATTAGAAAAAAGTAAACA+TGG - chr1_1:29642451-29642470 Msa0017740:intron 15.0%
!! ATTAATTAATGATATGCAAA+TGG - chr1_1:29642588-29642607 Msa0017740:intron 15.0%
!! TACAACTTAATTAAATAAGT+TGG + chr1_1:29642760-29642779 None:intergenic 15.0%
!! CGTTTATAATAATAACAATT+TGG + chr1_1:29642804-29642823 None:intergenic 15.0%
!!! TGAAATTTAAATTTTAGTCT+CGG + chr1_1:29643105-29643124 None:intergenic 15.0%
!! ACTAAAATTTAAATTTCAGT+TGG - chr1_1:29643107-29643126 Msa0017740:intron 15.0%
!! CTAAAATTTAAATTTCAGTT+GGG - chr1_1:29643108-29643127 Msa0017740:intron 15.0%
!!! ATATTCTATAACCATTTTTT+GGG + chr1_1:29643395-29643414 None:intergenic 15.0%
!!! TATATTCTATAACCATTTTT+TGG + chr1_1:29643396-29643415 None:intergenic 15.0%
!! TTAAAAAAAGTGAGAAATTA+TGG - chr1_1:29643441-29643460 Msa0017740:intron 15.0%
!!! TTTTATTTCTATGATTTTCT+TGG - chr1_1:29641999-29642018 Msa0017740:CDS 15.0%
!! TAAGATAGATTAAATTTAAC+AGG + chr1_1:29642393-29642412 None:intergenic 15.0%
!! TTATTAGAAAAAAGTAAACA+TGG - chr1_1:29642451-29642470 Msa0017740:intron 15.0%
!! ATTAATTAATGATATGCAAA+TGG - chr1_1:29642588-29642607 Msa0017740:intron 15.0%
!! TACAACTTAATTAAATAAGT+TGG + chr1_1:29642760-29642779 None:intergenic 15.0%
!! CGTTTATAATAATAACAATT+TGG + chr1_1:29642804-29642823 None:intergenic 15.0%
!!! TGAAATTTAAATTTTAGTCT+CGG + chr1_1:29643105-29643124 None:intergenic 15.0%
!! ACTAAAATTTAAATTTCAGT+TGG - chr1_1:29643107-29643126 Msa0017740:intron 15.0%
!! CTAAAATTTAAATTTCAGTT+GGG - chr1_1:29643108-29643127 Msa0017740:intron 15.0%
!!! ATATTCTATAACCATTTTTT+GGG + chr1_1:29643395-29643414 None:intergenic 15.0%
!!! TATATTCTATAACCATTTTT+TGG + chr1_1:29643396-29643415 None:intergenic 15.0%
!! TTAAAAAAAGTGAGAAATTA+TGG - chr1_1:29643441-29643460 Msa0017740:intron 15.0%
!! TGTAATTAAGATCACAAAAT+TGG + chr1_1:29642042-29642061 None:intergenic 20.0%
!! AATTAATTTCGTCACTAATT+TGG - chr1_1:29642478-29642497 Msa0017740:intron 20.0%
!!! ATTTTTTATAGTCAGTTGAA+TGG - chr1_1:29643533-29643552 Msa0017740:intron 20.0%
!!! AATTGATTTCTGAATTTTGA+GGG + chr1_1:29643811-29643830 None:intergenic 20.0%
!!! AAATTGATTTCTGAATTTTG+AGG + chr1_1:29643812-29643831 None:intergenic 20.0%
!! TGTAATTAAGATCACAAAAT+TGG + chr1_1:29642042-29642061 None:intergenic 20.0%
!! AATTAATTTCGTCACTAATT+TGG - chr1_1:29642478-29642497 Msa0017740:intron 20.0%
!!! ATTTTTTATAGTCAGTTGAA+TGG - chr1_1:29643533-29643552 Msa0017740:intron 20.0%
!!! AATTGATTTCTGAATTTTGA+GGG + chr1_1:29643811-29643830 None:intergenic 20.0%
!!! AAATTGATTTCTGAATTTTG+AGG + chr1_1:29643812-29643831 None:intergenic 20.0%
!!! AGAAAAAAACCAGCTTTTTT+GGG + chr1_1:29641945-29641964 None:intergenic 25.0%
!!! AAGAAAAAAACCAGCTTTTT+TGG + chr1_1:29641946-29641965 None:intergenic 25.0%
!!! CAAAATTGGTTTGTGAAAAA+GGG + chr1_1:29642028-29642047 None:intergenic 25.0%
!!! ACAAAATTGGTTTGTGAAAA+AGG + chr1_1:29642029-29642048 None:intergenic 25.0%
!! TTTTTATGCTTGATGTGAAA+GGG + chr1_1:29642176-29642195 None:intergenic 25.0%
!! AAAAACAGGACTTGTATTTT+TGG - chr1_1:29642191-29642210 Msa0017740:CDS 25.0%
!!! TTATGCACATTTTATTTGTG+AGG - chr1_1:29642225-29642244 Msa0017740:CDS 25.0%
! ATAGATTAAATTTAACAGGC+TGG + chr1_1:29642389-29642408 None:intergenic 25.0%
!! GATTTTTAATGTGTACAAGT+TGG - chr1_1:29642966-29642985 Msa0017740:intron 25.0%
! AAGAAATTATAACAACCAAC+TGG - chr1_1:29643021-29643040 Msa0017740:intron 25.0%
! AGAAATTATAACAACCAACT+GGG - chr1_1:29643022-29643041 Msa0017740:intron 25.0%
!! ACTCTAGTTTATAACATCAT+GGG + chr1_1:29643075-29643094 None:intergenic 25.0%
!! AACTCTAGTTTATAACATCA+TGG + chr1_1:29643076-29643095 None:intergenic 25.0%
! ACAGAAAAAATGTGATTAGA+AGG - chr1_1:29643290-29643309 Msa0017740:intron 25.0%
!!! ATTTTTTGGGTCTTAATCTT+GGG + chr1_1:29643382-29643401 None:intergenic 25.0%
! ACAATGATGTGAAAAACTAT+TGG - chr1_1:29643678-29643697 Msa0017740:intron 25.0%
!! AAAACTGAAGAAGAAGATTT+TGG - chr1_1:29643706-29643725 Msa0017740:intron 25.0%
! ACTTTATTGTCTAGCATAAT+TGG + chr1_1:29643875-29643894 None:intergenic 25.0%
! CAGCAATATTATTAATCCTT+TGG - chr1_1:29643940-29643959 Msa0017740:intron 25.0%
!!! AGAAAAAAACCAGCTTTTTT+GGG + chr1_1:29641945-29641964 None:intergenic 25.0%
!!! AAGAAAAAAACCAGCTTTTT+TGG + chr1_1:29641946-29641965 None:intergenic 25.0%
!!! CAAAATTGGTTTGTGAAAAA+GGG + chr1_1:29642028-29642047 None:intergenic 25.0%
!!! ACAAAATTGGTTTGTGAAAA+AGG + chr1_1:29642029-29642048 None:intergenic 25.0%
!! TTTTTATGCTTGATGTGAAA+GGG + chr1_1:29642176-29642195 None:intergenic 25.0%
!! AAAAACAGGACTTGTATTTT+TGG - chr1_1:29642191-29642210 Msa0017740:CDS 25.0%
!!! TTATGCACATTTTATTTGTG+AGG - chr1_1:29642225-29642244 Msa0017740:CDS 25.0%
! ATAGATTAAATTTAACAGGC+TGG + chr1_1:29642389-29642408 None:intergenic 25.0%
!! GATTTTTAATGTGTACAAGT+TGG - chr1_1:29642966-29642985 Msa0017740:intron 25.0%
! AAGAAATTATAACAACCAAC+TGG - chr1_1:29643021-29643040 Msa0017740:intron 25.0%
! AGAAATTATAACAACCAACT+GGG - chr1_1:29643022-29643041 Msa0017740:intron 25.0%
!! ACTCTAGTTTATAACATCAT+GGG + chr1_1:29643075-29643094 None:intergenic 25.0%
!! AACTCTAGTTTATAACATCA+TGG + chr1_1:29643076-29643095 None:intergenic 25.0%
! ACAGAAAAAATGTGATTAGA+AGG - chr1_1:29643290-29643309 Msa0017740:intron 25.0%
!!! ATTTTTTGGGTCTTAATCTT+GGG + chr1_1:29643382-29643401 None:intergenic 25.0%
! ACAATGATGTGAAAAACTAT+TGG - chr1_1:29643678-29643697 Msa0017740:intron 25.0%
!! AAAACTGAAGAAGAAGATTT+TGG - chr1_1:29643706-29643725 Msa0017740:intron 25.0%
! ACTTTATTGTCTAGCATAAT+TGG + chr1_1:29643875-29643894 None:intergenic 25.0%
! CAGCAATATTATTAATCCTT+TGG - chr1_1:29643940-29643959 Msa0017740:intron 25.0%
GACAAAGAGAAAGTTAAGAA+AGG - chr1_1:29641840-29641859 Msa0017740:CDS 30.0%
AATAAAAACAATGGGAAGAG+AGG + chr1_1:29641969-29641988 None:intergenic 30.0%
!! CTGTTGATAACACTTCAAAT+TGG + chr1_1:29642114-29642133 None:intergenic 30.0%
GTTATCAACAGACATGAAAA+TGG - chr1_1:29642123-29642142 Msa0017740:CDS 30.0%
! TTTTATGCTTGATGTGAAAG+GGG + chr1_1:29642175-29642194 None:intergenic 30.0%
! GTTTTTATGCTTGATGTGAA+AGG + chr1_1:29642177-29642196 None:intergenic 30.0%
TTCACATCAAGCATAAAAAC+AGG - chr1_1:29642177-29642196 Msa0017740:CDS 30.0%
ATTAATGATATGCAAATGGC+AGG - chr1_1:29642592-29642611 Msa0017740:intron 30.0%
GAAATTATAACAACCAACTG+GGG - chr1_1:29643023-29643042 Msa0017740:intron 30.0%
! ATGTCGTATTTAGAGTTTGA+GGG - chr1_1:29643135-29643154 Msa0017740:CDS 30.0%
TAATTTCTCACTTTGACTGA+AGG + chr1_1:29643181-29643200 None:intergenic 30.0%
!!! TTTTTTGGGTCTTAATCTTG+GGG + chr1_1:29643381-29643400 None:intergenic 30.0%
!!! CATTTTTTGGGTCTTAATCT+TGG + chr1_1:29643383-29643402 None:intergenic 30.0%
CAAGATTAAGACCCAAAAAA+TGG - chr1_1:29643381-29643400 Msa0017740:intron 30.0%
GTACTATGAAACTAACTTTG+AGG + chr1_1:29643560-29643579 None:intergenic 30.0%
TAGTTTCATAGTACTTCAAG+AGG - chr1_1:29643566-29643585 Msa0017740:intron 30.0%
TGAGAACTATTCAAACTTTG+AGG + chr1_1:29643598-29643617 None:intergenic 30.0%
! AATTTGTGATTTTGTGCAGA+TGG - chr1_1:29643621-29643640 Msa0017740:intron 30.0%
!!! GTATTGTCATTTTCAGTCAA+TGG + chr1_1:29643752-29643771 None:intergenic 30.0%
!!! AATGTTGATTTTGTGAAGCA+GGG + chr1_1:29643835-29643854 None:intergenic 30.0%
TGAATCTATGGAATCATTGA+TGG - chr1_1:29644015-29644034 Msa0017740:CDS 30.0%
!!! ATGGAATCATTGATGGATTT+TGG - chr1_1:29644022-29644041 Msa0017740:CDS 30.0%
GACAAAGAGAAAGTTAAGAA+AGG - chr1_1:29641840-29641859 Msa0017740:CDS 30.0%
AATAAAAACAATGGGAAGAG+AGG + chr1_1:29641969-29641988 None:intergenic 30.0%
!! CTGTTGATAACACTTCAAAT+TGG + chr1_1:29642114-29642133 None:intergenic 30.0%
GTTATCAACAGACATGAAAA+TGG - chr1_1:29642123-29642142 Msa0017740:CDS 30.0%
! TTTTATGCTTGATGTGAAAG+GGG + chr1_1:29642175-29642194 None:intergenic 30.0%
! GTTTTTATGCTTGATGTGAA+AGG + chr1_1:29642177-29642196 None:intergenic 30.0%
TTCACATCAAGCATAAAAAC+AGG - chr1_1:29642177-29642196 Msa0017740:CDS 30.0%
ATTAATGATATGCAAATGGC+AGG - chr1_1:29642592-29642611 Msa0017740:intron 30.0%
GAAATTATAACAACCAACTG+GGG - chr1_1:29643023-29643042 Msa0017740:intron 30.0%
! ATGTCGTATTTAGAGTTTGA+GGG - chr1_1:29643135-29643154 Msa0017740:CDS 30.0%
TAATTTCTCACTTTGACTGA+AGG + chr1_1:29643181-29643200 None:intergenic 30.0%
!!! TTTTTTGGGTCTTAATCTTG+GGG + chr1_1:29643381-29643400 None:intergenic 30.0%
!!! CATTTTTTGGGTCTTAATCT+TGG + chr1_1:29643383-29643402 None:intergenic 30.0%
CAAGATTAAGACCCAAAAAA+TGG - chr1_1:29643381-29643400 Msa0017740:intron 30.0%
GTACTATGAAACTAACTTTG+AGG + chr1_1:29643560-29643579 None:intergenic 30.0%
TAGTTTCATAGTACTTCAAG+AGG - chr1_1:29643566-29643585 Msa0017740:intron 30.0%
TGAGAACTATTCAAACTTTG+AGG + chr1_1:29643598-29643617 None:intergenic 30.0%
! AATTTGTGATTTTGTGCAGA+TGG - chr1_1:29643621-29643640 Msa0017740:intron 30.0%
!!! GTATTGTCATTTTCAGTCAA+TGG + chr1_1:29643752-29643771 None:intergenic 30.0%
!!! AATGTTGATTTTGTGAAGCA+GGG + chr1_1:29643835-29643854 None:intergenic 30.0%
TGAATCTATGGAATCATTGA+TGG - chr1_1:29644015-29644034 Msa0017740:CDS 30.0%
!!! ATGGAATCATTGATGGATTT+TGG - chr1_1:29644022-29644041 Msa0017740:CDS 30.0%
ACTTTCTCTTTGTCACAACA+AGG + chr1_1:29641834-29641853 None:intergenic 35.0%
AGAAAGTTAAGAAAGGACCA+TGG - chr1_1:29641847-29641866 Msa0017740:CDS 35.0%
AAGAGTTATCTTGCAACTCA+TGG - chr1_1:29641894-29641913 Msa0017740:CDS 35.0%
AGAATAGAGGGTGAAAATGA+TGG + chr1_1:29642710-29642729 None:intergenic 35.0%
TTTCACCCTCTATTCTCAAA+TGG - chr1_1:29642714-29642733 Msa0017740:intron 35.0%
TTCACCCTCTATTCTCAAAT+GGG - chr1_1:29642715-29642734 Msa0017740:intron 35.0%
! GATGTCGTATTTAGAGTTTG+AGG - chr1_1:29643134-29643153 Msa0017740:CDS 35.0%
CACTTAGACCAACATTATGT+CGG + chr1_1:29643215-29643234 None:intergenic 35.0%
! AATGTTGGTCTAAGTGTAAC+TGG - chr1_1:29643219-29643238 Msa0017740:CDS 35.0%
GGAGAGAAACTACTAAATGT+TGG - chr1_1:29643311-29643330 Msa0017740:intron 35.0%
! TTGGAACTTTGAGTTAGTGA+TGG + chr1_1:29643788-29643807 None:intergenic 35.0%
!! GATTTCTGAATTTTGAGGGT+TGG + chr1_1:29643807-29643826 None:intergenic 35.0%
!!! GAATGTTGATTTTGTGAAGC+AGG + chr1_1:29643836-29643855 None:intergenic 35.0%
TTGTCTAGCATAATTGGAAG+TGG + chr1_1:29643869-29643888 None:intergenic 35.0%
GATGCTGTAGTATCAGAAAT+TGG - chr1_1:29643908-29643927 Msa0017740:intron 35.0%
TCTTGAGAAATTGACACCAA+AGG + chr1_1:29643959-29643978 None:intergenic 35.0%
ATTGCAATTCAAGATCAAGC+TGG - chr1_1:29643989-29644008 Msa0017740:CDS 35.0%
!!! TCATTGATGGATTTTGGCTT+TGG - chr1_1:29644028-29644047 Msa0017740:CDS 35.0%
TCATTGACATGATCATCATG+AGG + chr1_1:29644058-29644077 None:intergenic 35.0%
TAACTAAAATCAACCCACTC+AGG + chr1_1:29644094-29644113 None:intergenic 35.0%
ACTTTCTCTTTGTCACAACA+AGG + chr1_1:29641834-29641853 None:intergenic 35.0%
AGAAAGTTAAGAAAGGACCA+TGG - chr1_1:29641847-29641866 Msa0017740:CDS 35.0%
AAGAGTTATCTTGCAACTCA+TGG - chr1_1:29641894-29641913 Msa0017740:CDS 35.0%
AGAATAGAGGGTGAAAATGA+TGG + chr1_1:29642710-29642729 None:intergenic 35.0%
TTTCACCCTCTATTCTCAAA+TGG - chr1_1:29642714-29642733 Msa0017740:intron 35.0%
TTCACCCTCTATTCTCAAAT+GGG - chr1_1:29642715-29642734 Msa0017740:intron 35.0%
! GATGTCGTATTTAGAGTTTG+AGG - chr1_1:29643134-29643153 Msa0017740:CDS 35.0%
CACTTAGACCAACATTATGT+CGG + chr1_1:29643215-29643234 None:intergenic 35.0%
! AATGTTGGTCTAAGTGTAAC+TGG - chr1_1:29643219-29643238 Msa0017740:CDS 35.0%
GGAGAGAAACTACTAAATGT+TGG - chr1_1:29643311-29643330 Msa0017740:intron 35.0%
! TTGGAACTTTGAGTTAGTGA+TGG + chr1_1:29643788-29643807 None:intergenic 35.0%
!! GATTTCTGAATTTTGAGGGT+TGG + chr1_1:29643807-29643826 None:intergenic 35.0%
!!! GAATGTTGATTTTGTGAAGC+AGG + chr1_1:29643836-29643855 None:intergenic 35.0%
TTGTCTAGCATAATTGGAAG+TGG + chr1_1:29643869-29643888 None:intergenic 35.0%
GATGCTGTAGTATCAGAAAT+TGG - chr1_1:29643908-29643927 Msa0017740:intron 35.0%
TCTTGAGAAATTGACACCAA+AGG + chr1_1:29643959-29643978 None:intergenic 35.0%
ATTGCAATTCAAGATCAAGC+TGG - chr1_1:29643989-29644008 Msa0017740:CDS 35.0%
!!! TCATTGATGGATTTTGGCTT+TGG - chr1_1:29644028-29644047 Msa0017740:CDS 35.0%
TCATTGACATGATCATCATG+AGG + chr1_1:29644058-29644077 None:intergenic 35.0%
TAACTAAAATCAACCCACTC+AGG + chr1_1:29644094-29644113 None:intergenic 35.0%
! TTGAGTGTTGCATCTTCATC+CGG + chr1_1:29641876-29641895 None:intergenic 40.0%
ATTGCATTGCCCAAAAAAGC+TGG - chr1_1:29641933-29641952 Msa0017740:CDS 40.0%
GATAATTCAGCCACCTTAGA+CGG + chr1_1:29642642-29642661 None:intergenic 40.0%
TAAGGTGGCTGAATTATCTG+AGG - chr1_1:29642644-29642663 Msa0017740:intron 40.0%
AAGCCTCCATGTTTGATATC+TGG + chr1_1:29642670-29642689 None:intergenic 40.0%
GCTACCCATTTGAGAATAGA+GGG + chr1_1:29642722-29642741 None:intergenic 40.0%
TGCTACCCATTTGAGAATAG+AGG + chr1_1:29642723-29642742 None:intergenic 40.0%
TCTATTCTCAAATGGGTAGC+AGG - chr1_1:29642722-29642741 Msa0017740:intron 40.0%
TGGTCTAAGTGTAACTGGAT+TGG - chr1_1:29643224-29643243 Msa0017740:CDS 40.0%
TGTCGAACCTGTGATGATTA+TGG - chr1_1:29643350-29643369 Msa0017740:intron 40.0%
GGAAAGACCATAATCATCAC+AGG + chr1_1:29643360-29643379 None:intergenic 40.0%
!! CTGAAGAAGAAGATTTTGGC+AGG - chr1_1:29643710-29643729 Msa0017740:intron 40.0%
! GAGTTAGTGATGGAGTTGAA+GGG + chr1_1:29643778-29643797 None:intergenic 40.0%
! TGAGTTAGTGATGGAGTTGA+AGG + chr1_1:29643779-29643798 None:intergenic 40.0%
ATAATTGGAAGTGGTGAAGG+TGG + chr1_1:29643860-29643879 None:intergenic 40.0%
AGCATAATTGGAAGTGGTGA+AGG + chr1_1:29643863-29643882 None:intergenic 40.0%
! TCAAGCTGGTGATGAATCTA+TGG - chr1_1:29644003-29644022 Msa0017740:CDS 40.0%
ATCTTAACTGCTTTCCTGAG+TGG - chr1_1:29644077-29644096 Msa0017740:exon 40.0%
TCTTAACTGCTTTCCTGAGT+GGG - chr1_1:29644078-29644097 Msa0017740:exon 40.0%
! TTGAGTGTTGCATCTTCATC+CGG + chr1_1:29641876-29641895 None:intergenic 40.0%
ATTGCATTGCCCAAAAAAGC+TGG - chr1_1:29641933-29641952 Msa0017740:CDS 40.0%
GATAATTCAGCCACCTTAGA+CGG + chr1_1:29642642-29642661 None:intergenic 40.0%
TAAGGTGGCTGAATTATCTG+AGG - chr1_1:29642644-29642663 Msa0017740:intron 40.0%
AAGCCTCCATGTTTGATATC+TGG + chr1_1:29642670-29642689 None:intergenic 40.0%
GCTACCCATTTGAGAATAGA+GGG + chr1_1:29642722-29642741 None:intergenic 40.0%
TGCTACCCATTTGAGAATAG+AGG + chr1_1:29642723-29642742 None:intergenic 40.0%
TCTATTCTCAAATGGGTAGC+AGG - chr1_1:29642722-29642741 Msa0017740:intron 40.0%
TGGTCTAAGTGTAACTGGAT+TGG - chr1_1:29643224-29643243 Msa0017740:CDS 40.0%
TGTCGAACCTGTGATGATTA+TGG - chr1_1:29643350-29643369 Msa0017740:intron 40.0%
GGAAAGACCATAATCATCAC+AGG + chr1_1:29643360-29643379 None:intergenic 40.0%
!! CTGAAGAAGAAGATTTTGGC+AGG - chr1_1:29643710-29643729 Msa0017740:intron 40.0%
! GAGTTAGTGATGGAGTTGAA+GGG + chr1_1:29643778-29643797 None:intergenic 40.0%
! TGAGTTAGTGATGGAGTTGA+AGG + chr1_1:29643779-29643798 None:intergenic 40.0%
ATAATTGGAAGTGGTGAAGG+TGG + chr1_1:29643860-29643879 None:intergenic 40.0%
AGCATAATTGGAAGTGGTGA+AGG + chr1_1:29643863-29643882 None:intergenic 40.0%
! TCAAGCTGGTGATGAATCTA+TGG - chr1_1:29644003-29644022 Msa0017740:CDS 40.0%
ATCTTAACTGCTTTCCTGAG+TGG - chr1_1:29644077-29644096 Msa0017740:exon 40.0%
TCTTAACTGCTTTCCTGAGT+GGG - chr1_1:29644078-29644097 Msa0017740:exon 40.0%
TTGAGTGAGAGAGTAGCCAT+GGG - chr1_1:29641801-29641820 Msa0017740:CDS 45.0%
TAAGAAAGGACCATGGTCTC+CGG - chr1_1:29641854-29641873 Msa0017740:CDS 45.0%
CTCATGGCACTGTTGGAAAT+TGG - chr1_1:29641910-29641929 Msa0017740:CDS 45.0%
TGCAAATGGCAGGACTTAAG+AGG - chr1_1:29642602-29642621 Msa0017740:intron 45.0%
CTGAGGCCAGATATCAAACA+TGG - chr1_1:29642661-29642680 Msa0017740:intron 45.0%
AGGCCAGATATCAAACATGG+AGG - chr1_1:29642664-29642683 Msa0017740:intron 45.0%
TGGGGTTGAGTCAACTTGAA+GGG - chr1_1:29643041-29643060 Msa0017740:intron 45.0%
CCAACATTATGTCGGACTGT+CGG + chr1_1:29643207-29643226 None:intergenic 45.0%
GCCATAGCATCTAAACTACC+TGG - chr1_1:29643647-29643666 Msa0017740:intron 45.0%
GCCAGGTAGTTTAGATGCTA+TGG + chr1_1:29643651-29643670 None:intergenic 45.0%
ACATCATTGTCTGTTCTGCC+AGG + chr1_1:29643668-29643687 None:intergenic 45.0%
TTGAGTGAGAGAGTAGCCAT+GGG - chr1_1:29641801-29641820 Msa0017740:CDS 45.0%
TAAGAAAGGACCATGGTCTC+CGG - chr1_1:29641854-29641873 Msa0017740:CDS 45.0%
CTCATGGCACTGTTGGAAAT+TGG - chr1_1:29641910-29641929 Msa0017740:CDS 45.0%
TGCAAATGGCAGGACTTAAG+AGG - chr1_1:29642602-29642621 Msa0017740:intron 45.0%
CTGAGGCCAGATATCAAACA+TGG - chr1_1:29642661-29642680 Msa0017740:intron 45.0%
AGGCCAGATATCAAACATGG+AGG - chr1_1:29642664-29642683 Msa0017740:intron 45.0%
TGGGGTTGAGTCAACTTGAA+GGG - chr1_1:29643041-29643060 Msa0017740:intron 45.0%
CCAACATTATGTCGGACTGT+CGG + chr1_1:29643207-29643226 None:intergenic 45.0%
GCCATAGCATCTAAACTACC+TGG - chr1_1:29643647-29643666 Msa0017740:intron 45.0%
GCCAGGTAGTTTAGATGCTA+TGG + chr1_1:29643651-29643670 None:intergenic 45.0%
ACATCATTGTCTGTTCTGCC+AGG + chr1_1:29643668-29643687 None:intergenic 45.0%
!! AAATAAAAAATAAAAACAAT+GGG + chr1_1:29641977-29641996 None:intergenic 5.0%
!! AAAATAAAAAATAAAAACAA+TGG + chr1_1:29641978-29641997 None:intergenic 5.0%
!! TTAATTAATTAATTATCTAT+AGG + chr1_1:29642577-29642596 None:intergenic 5.0%
!! AAATAAAAAATAAAAACAAT+GGG + chr1_1:29641977-29641996 None:intergenic 5.0%
!! AAAATAAAAAATAAAAACAA+TGG + chr1_1:29641978-29641997 None:intergenic 5.0%
!! TTAATTAATTAATTATCTAT+AGG + chr1_1:29642577-29642596 None:intergenic 5.0%
GTTGAGTGAGAGAGTAGCCA+TGG - chr1_1:29641800-29641819 Msa0017740:CDS 50.0%
ACAACAAGGAGCTCTTCCCA+TGG + chr1_1:29641820-29641839 None:intergenic 50.0%
CTTGCAACTCATGGCACTGT+TGG - chr1_1:29641903-29641922 Msa0017740:CDS 50.0%
ATGGCAGGACTTAAGAGGTG+TGG - chr1_1:29642607-29642626 Msa0017740:intron 50.0%
! TGGCAGGACTTAAGAGGTGT+GGG - chr1_1:29642608-29642627 Msa0017740:intron 50.0%
TGGAGGCTTCACTGAAGAAG+AGG - chr1_1:29642681-29642700 Msa0017740:intron 50.0%
! CAAGTTGACTCAACCCCAGT+TGG + chr1_1:29643039-29643058 None:intergenic 50.0%
CTGGGGTTGAGTCAACTTGA+AGG - chr1_1:29643040-29643059 Msa0017740:intron 50.0%
GGGGTTGAGTCAACTTGAAG+GGG - chr1_1:29643042-29643061 Msa0017740:intron 50.0%
CCGACAGTCCGACATAATGT+TGG - chr1_1:29643204-29643223 Msa0017740:CDS 50.0%
GTTGAGTGAGAGAGTAGCCA+TGG - chr1_1:29641800-29641819 Msa0017740:CDS 50.0%
ACAACAAGGAGCTCTTCCCA+TGG + chr1_1:29641820-29641839 None:intergenic 50.0%
CTTGCAACTCATGGCACTGT+TGG - chr1_1:29641903-29641922 Msa0017740:CDS 50.0%
ATGGCAGGACTTAAGAGGTG+TGG - chr1_1:29642607-29642626 Msa0017740:intron 50.0%
! TGGCAGGACTTAAGAGGTGT+GGG - chr1_1:29642608-29642627 Msa0017740:intron 50.0%
TGGAGGCTTCACTGAAGAAG+AGG - chr1_1:29642681-29642700 Msa0017740:intron 50.0%
! CAAGTTGACTCAACCCCAGT+TGG + chr1_1:29643039-29643058 None:intergenic 50.0%
CTGGGGTTGAGTCAACTTGA+AGG - chr1_1:29643040-29643059 Msa0017740:intron 50.0%
GGGGTTGAGTCAACTTGAAG+GGG - chr1_1:29643042-29643061 Msa0017740:intron 50.0%
CCGACAGTCCGACATAATGT+TGG - chr1_1:29643204-29643223 Msa0017740:CDS 50.0%
GCATCTTCATCCGGAGACCA+TGG + chr1_1:29641867-29641886 None:intergenic 55.0%
GTGGGAAGAGTTGCCGTCTA+AGG - chr1_1:29642626-29642645 Msa0017740:intron 55.0%
GGAAGAGTTGCCGTCTAAGG+TGG - chr1_1:29642629-29642648 Msa0017740:intron 55.0%
GCATCTTCATCCGGAGACCA+TGG + chr1_1:29641867-29641886 None:intergenic 55.0%
GTGGGAAGAGTTGCCGTCTA+AGG - chr1_1:29642626-29642645 Msa0017740:intron 55.0%
GGAAGAGTTGCCGTCTAAGG+TGG - chr1_1:29642629-29642648 Msa0017740:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29641772 29644135 29641772 ID=Msa0017740;Name=Msa0017740
chr1_1 mRNA 29641772 29644135 29641772 ID=Msa0017740-mRNA-1;Parent=Msa0017740;Name=Msa0017740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=47|0.5|0.33|1|1|1|3|0|264
chr1_1 exon 29641772 29642267 29641772 ID=Msa0017740-mRNA-1:exon:9894;Parent=Msa0017740-mRNA-1
chr1_1 exon 29643131 29643293 29643131 ID=Msa0017740-mRNA-1:exon:9893;Parent=Msa0017740-mRNA-1
chr1_1 exon 29643953 29644135 29643953 ID=Msa0017740-mRNA-1:exon:9892;Parent=Msa0017740-mRNA-1
chr1_1 five_prime_UTR 29644089 29644135 29644089 ID=Msa0017740-mRNA-1:five_prime_utr;Parent=Msa0017740-mRNA-1
chr1_1 CDS 29643953 29644088 29643953 ID=Msa0017740-mRNA-1:cds;Parent=Msa0017740-mRNA-1
chr1_1 CDS 29643131 29643293 29643131 ID=Msa0017740-mRNA-1:cds;Parent=Msa0017740-mRNA-1
chr1_1 CDS 29641772 29642267 29641772 ID=Msa0017740-mRNA-1:cds;Parent=Msa0017740-mRNA-1
Gene Sequence

>Msa0017740

ATGGGAAGAGCTCCTTGTTGTGACAAAGAGAAAGTTAAGAAAGGACCATGGTCTCCGGATGAAGATGCAACACTCAAGAGTTATCTTGCAACTCATGGCACTGTTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGACTTAAGAGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTGAGGCCAGATATCAAACATGGAGGCTTCACTGAAGAAGAGGATGCCATCATTTTCACCCTCTATTCTCAAATGGGTAGCAGGCAAGTACTATTTCCAACTTATTTAATTAAGTTATGGTCTGCCATAGCATCTAAACTACCTGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACAAAACTGAAGAAGAAGATTTTGGCAGGAATAGTTAAGCTCAAACCATTGACTGAAAATGACAATACTATCCCTTCAACTCCATCACTAACTCAAAGTTCCAACCCTCAAAATTCAGAAATCAATTTCCCTGCTTCACAAAATCAACATTCTCCACCTTCACCACTTCCAATTATGCTAGACAATAAAGTTGACAAAATTCATGATGCTGTAGTATCAGAAATTGGTACAAGTAACAGCAATATTATTAATCCTTTGGTGTCAATTTCTCAAGACTCTTCAAGCATTGCAATTCAAGATCAAGCTGGTGATGAATCTATGGAATCATTGATGGATTTTGGCTTTGGATTTCCTCATGATGATCATGTCAATGATCTTAACTGCTTTCCTGAGTGGGTTGATTTTAGTTATGCTGACATTAAGCCAAATTGA
Protein sequence

>Msa0017740

MGRAPCCDKEKVKKGPWSPDEDATLKSYLATHGTVGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDAIIFTLYSQMGSRQVLFPTYLIKLWSAIASKLPGRTDNDVKNYWNTKLKKKILAGIVKLKPLTENDNTIPSTPSLTQSSNPQNSEINFPASQNQHSPPSPLPIMLDNKVDKIHDAVVSEIGTSNSNIINPLVSISQDSSSIAIQDQAGDESMESLMDFGFGFPHDDHVNDLNCFPEWVDFSYADIKPN*