AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098230 MtrunA17_Chr1g0151941 76.680 253 15 2 1 210 1 252 9.78e-136 380
Msa0098230 MtrunA17_Chr4g0072751 76.289 97 23 0 1 97 1 97 2.28e-50 166
Msa0098230 MtrunA17_Chr1g0152011 72.165 97 27 0 1 97 1 97 4.33e-48 160
Msa0098230 MtrunA17_Chr5g0400821 73.196 97 26 0 1 97 1 97 4.75e-48 159
Msa0098230 MtrunA17_Chr3g0135311 78.652 89 19 0 1 89 1 89 1.30e-47 159
Msa0098230 MtrunA17_Chr2g0327351 70.103 97 29 0 1 97 1 97 1.77e-47 158
Msa0098230 MtrunA17_Chr6g0487491 67.308 104 34 0 1 104 1 104 3.27e-47 156
Msa0098230 MtrunA17_Chr4g0054391 70.103 97 29 0 1 97 1 97 3.51e-47 157
Msa0098230 MtrunA17_Chr7g0264641 68.041 97 31 0 1 97 1 97 2.14e-46 154
Msa0098230 MtrunA17_Chr4g0028311 69.072 97 30 0 1 97 1 97 1.14e-45 154
Msa0098230 MtrunA17_Chr6g0452271 64.045 89 31 1 1 89 1 88 7.56e-38 134
Msa0098230 MtrunA17_Chr6g0453471 54.808 104 46 1 1 104 1 103 1.64e-36 130
Msa0098230 MtrunA17_Chr7g0217221 52.137 117 50 2 1 117 1 111 2.81e-36 128
Msa0098230 MtrunA17_Chr8g0346561 59.794 97 38 1 1 97 1 96 2.68e-35 126
Msa0098230 MtrunA17_Chr3g0115821 56.701 97 41 1 1 97 1 96 3.28e-35 127
Msa0098230 MtrunA17_Chr3g0103281 57.732 97 40 1 1 97 1 96 3.35e-35 126
Msa0098230 MtrunA17_Chr1g0187761 62.921 89 32 1 1 89 1 88 4.67e-35 124
Msa0098230 MtrunA17_Chr4g0039971 60.674 89 34 1 1 89 2 89 7.25e-35 126
Msa0098230 MtrunA17_Chr2g0311221 56.250 96 41 1 2 97 4 98 2.18e-34 124
Msa0098230 MtrunA17_Chr5g0410961 56.701 97 41 1 1 97 1 96 3.33e-34 124
Msa0098230 MtrunA17_Chr1g0167691 59.551 89 35 1 1 89 1 88 3.42e-34 122
Msa0098230 MtrunA17_Chr2g0323411 61.798 89 33 1 1 89 1 88 4.45e-34 124
Msa0098230 MtrunA17_Chr3g0131121 55.670 97 42 1 1 97 1 96 4.69e-34 123
Msa0098230 MtrunA17_Chr4g0042611 58.427 89 36 1 1 89 1 88 6.79e-34 116
Msa0098230 MtrunA17_Chr4g0037141 56.701 97 41 1 1 97 1 96 7.70e-34 122
Msa0098230 MtrunA17_Chr7g0261281 48.361 122 57 2 1 117 1 121 7.82e-34 122
Msa0098230 MtrunA17_Chr1g0203411 54.639 97 43 1 1 97 1 96 9.15e-34 122
Msa0098230 MtrunA17_Chr7g0275911 55.670 97 42 1 1 97 1 96 9.75e-34 121
Msa0098230 MtrunA17_Chr6g0453211 56.701 97 41 1 1 97 1 96 1.08e-33 122
Msa0098230 MtrunA17_Chr1g0167661 59.551 89 35 1 1 89 1 88 1.21e-33 120
Msa0098230 MtrunA17_Chr7g0217741 55.556 99 43 1 1 99 1 98 1.26e-33 122
Msa0098230 MtrunA17_Chr8g0342461 56.044 91 40 0 1 91 1 91 1.57e-33 117
Msa0098230 MtrunA17_Chr8g0342511 55.435 92 40 1 1 92 1 91 1.72e-33 115
Msa0098230 MtrunA17_Chr5g0397231 53.608 97 44 1 1 97 1 96 2.85e-33 122
Msa0098230 MtrunA17_Chr8g0387421 53.608 97 44 1 1 97 1 96 3.06e-33 121
Msa0098230 MtrunA17_Chr8g0342471 56.044 91 40 0 1 91 1 91 3.88e-33 116
Msa0098230 MtrunA17_Chr7g0254411 43.478 138 63 3 1 138 1 123 1.01e-32 120
Msa0098230 MtrunA17_Chr8g0342531 46.491 114 56 2 1 110 1 113 1.07e-32 115
Msa0098230 MtrunA17_Chr4g0060721 53.608 97 44 1 1 97 2 97 1.74e-32 119
Msa0098230 MtrunA17_Chr4g0048511 58.889 90 35 2 1 89 1 89 1.82e-32 120
Msa0098230 MtrunA17_Chr4g0070641 52.577 97 45 1 1 97 1 96 2.04e-32 115
Msa0098230 MtrunA17_Chr5g0435101 38.415 164 89 4 3 166 2 153 2.33e-32 116
Msa0098230 MtrunA17_Chr2g0281071 58.889 90 35 2 1 89 1 89 2.59e-32 119
Msa0098230 MtrunA17_Chr4g0070611 52.577 97 45 1 1 97 1 96 3.68e-32 118
Msa0098230 MtrunA17_Chr7g0274581 56.180 89 38 1 1 89 1 88 4.36e-32 115
Msa0098230 MtrunA17_Chr1g0193371 55.056 89 39 1 1 89 1 88 7.03e-32 119
Msa0098230 MtrunA17_Chr7g0271241 56.180 89 38 1 1 89 1 88 7.40e-32 119
Msa0098230 MtrunA17_Chr8g0342541 52.577 97 45 1 1 97 1 96 8.91e-32 118
Msa0098230 MtrunA17_Chr4g0022891 56.701 97 41 1 1 97 1 96 1.26e-31 115
Msa0098230 MtrunA17_Chr4g0057031 56.180 89 38 1 1 89 1 88 1.57e-31 115
Msa0098230 MtrunA17_Chr8g0349261 53.061 98 45 1 1 97 1 98 1.61e-31 116
Msa0098230 MtrunA17_Chr8g0385321 56.180 89 38 1 1 89 1 88 1.67e-31 116
Msa0098230 MtrunA17_Chr8g0342481 51.546 97 47 0 1 97 1 97 1.77e-31 118
Msa0098230 MtrunA17_Chr4g0042671 57.303 89 37 1 1 89 1 88 1.91e-31 118
Msa0098230 MtrunA17_Chr5g0434571 40.000 150 84 2 1 145 37 185 2.37e-31 117
Msa0098230 MtrunA17_Chr8g0342521 52.577 97 45 1 1 97 1 96 2.38e-31 117
Msa0098230 MtrunA17_Chr7g0270891 55.056 89 39 1 1 89 1 88 3.05e-31 117
Msa0098230 MtrunA17_Chr4g0068061 52.577 97 45 1 1 97 1 96 3.26e-31 116
Msa0098230 MtrunA17_Chr2g0330041 51.546 97 46 1 1 97 1 96 3.31e-31 117
Msa0098230 MtrunA17_Chr2g0323351 52.577 97 45 1 1 97 1 96 3.49e-31 114
Msa0098230 MtrunA17_Chr5g0395281 53.608 97 44 1 1 97 1 96 4.58e-31 115
Msa0098230 MtrunA17_Chr3g0092401 52.577 97 45 1 1 97 2 97 7.68e-31 115
Msa0098230 MtrunA17_Chr7g0228891 55.056 89 39 1 1 89 1 88 8.59e-31 114
Msa0098230 MtrunA17_Chr4g0058631 53.933 89 40 1 1 89 1 88 9.17e-31 115
Msa0098230 MtrunA17_Chr2g0294811 55.056 89 39 1 1 89 1 88 1.09e-30 109
Msa0098230 MtrunA17_Chr1g0193801 53.933 89 40 1 1 89 1 88 1.21e-30 115
Msa0098230 MtrunA17_Chr3g0110351 51.546 97 46 1 1 97 1 96 2.02e-30 114
Msa0098230 MtrunA17_Chr2g0309911 53.261 92 42 1 6 97 5 95 2.16e-30 114
Msa0098230 MtrunA17_Chr3g0117091 53.933 89 40 1 1 89 1 88 1.41e-29 112
Msa0098230 MtrunA17_Chr4g0022901 53.333 90 40 2 1 89 1 89 4.03e-29 109
Msa0098230 MtrunA17_Chr4g0022931 53.333 90 40 2 1 89 1 89 7.76e-29 108
Msa0098230 MtrunA17_Chr2g0323321 47.475 99 50 2 1 99 1 97 1.02e-28 103
Msa0098230 MtrunA17_Chr1g0211161 52.874 87 40 1 3 89 4 89 2.49e-28 106
Msa0098230 MtrunA17_Chr1g0194951 47.423 97 50 1 1 97 1 96 5.80e-28 108
Msa0098230 MtrunA17_Chr4g0022911 50.000 90 43 2 1 89 1 89 3.84e-27 104
Msa0098230 MtrunA17_Chr5g0395221 51.685 89 42 1 1 89 1 88 6.25e-27 98.6
Msa0098230 MtrunA17_Chr4g0022881 48.454 97 49 1 1 97 1 96 7.21e-27 102
Msa0098230 MtrunA17_Chr3g0121241 49.438 89 44 1 5 93 35 122 1.52e-26 103
Msa0098230 MtrunA17_Chr7g0269831 51.546 97 46 1 1 97 1 96 2.00e-26 103
Msa0098230 MtrunA17_Chr3g0099141 52.439 82 38 1 8 89 36 116 2.46e-26 99.0
Msa0098230 MtrunA17_Chr6g0450101 48.485 99 48 2 1 97 1 98 3.21e-26 100
Msa0098230 MtrunA17_Chr5g0425591 55.263 76 33 1 12 87 9 83 1.13e-25 95.5
Msa0098230 MtrunA17_Chr7g0228231 52.326 86 40 1 12 97 14 98 2.54e-25 98.2
Msa0098230 MtrunA17_Chr3g0080861 52.326 86 40 1 12 97 37 121 6.32e-25 101
Msa0098230 MtrunA17_Chr1g0209661 52.439 82 38 1 8 89 23 103 8.99e-25 99.0
Msa0098230 MtrunA17_Chr4g0044421 48.958 96 47 2 3 97 2 96 1.97e-24 95.5
Msa0098230 MtrunA17_Chr5g0417821 53.846 78 35 1 12 89 7 83 2.34e-24 97.4
Msa0098230 MtrunA17_Chr3g0088461 51.220 82 39 1 8 89 18 98 2.59e-24 98.2
Msa0098230 MtrunA17_Chr1g0194301 50.000 82 40 1 8 89 29 109 3.37e-24 96.7
Msa0098230 MtrunA17_Chr1g0203441 50.000 90 43 2 1 89 1 89 4.19e-24 96.3
Msa0098230 MtrunA17_Chr5g0440781 55.263 76 33 1 12 87 12 86 5.65e-24 94.0
Msa0098230 MtrunA17_Chr4g0068921 52.222 90 42 1 8 97 20 108 1.25e-23 93.2
Msa0098230 MtrunA17_Chr2g0328771 50.000 78 38 1 12 89 20 96 1.63e-23 95.5
Msa0098230 MtrunA17_Chr3g0099131 52.564 78 36 1 12 89 41 117 1.66e-23 97.4
Msa0098230 MtrunA17_Chr1g0194291 48.837 86 43 1 12 97 21 105 1.71e-23 94.7
Msa0098230 MtrunA17_Chr5g0440761 55.263 76 33 1 12 87 12 86 2.36e-23 94.4
Msa0098230 MtrunA17_Chr1g0186061 47.561 82 42 1 8 89 16 96 2.60e-23 94.0
Msa0098230 MtrunA17_Chr5g0441141 55.263 76 33 1 12 87 12 86 2.85e-23 94.4
Msa0098230 MtrunA17_Chr4g0032401 51.899 79 37 1 11 89 16 93 3.02e-23 95.1
Msa0098230 MtrunA17_Chr6g0470971 47.674 86 44 1 4 89 6 90 3.39e-22 91.3
Msa0098230 MtrunA17_Chr1g0168661 47.619 84 43 1 6 89 15 97 3.71e-22 90.9
Msa0098230 MtrunA17_Chr6g0453751 46.988 83 37 1 12 87 20 102 4.29e-22 87.4
Msa0098230 MtrunA17_Chr2g0293911 51.111 90 43 1 8 97 20 108 4.32e-22 92.0
Msa0098230 MtrunA17_Chr8g0354661 47.674 86 44 1 12 97 37 121 7.41e-22 92.8
Msa0098230 MtrunA17_Chr8g0343831 45.361 97 48 2 1 97 1 92 8.55e-22 89.7
Msa0098230 MtrunA17_Chr1g0192411 47.423 97 50 1 1 97 1 96 1.02e-21 91.7
Msa0098230 MtrunA17_Chr4g0055981 38.136 118 67 2 9 121 52 168 2.40e-21 88.2
Msa0098230 MtrunA17_Chr8g0360111 46.512 86 45 1 12 97 25 109 6.55e-21 87.8
Msa0098230 MtrunA17_Chr2g0322521 51.163 86 41 1 12 97 29 113 1.14e-20 89.0
Msa0098230 MtrunA17_Chr5g0434911 43.956 91 50 1 7 97 16 105 2.07e-20 86.7
Msa0098230 MtrunA17_Chr1g0154031 48.718 78 39 1 12 89 76 152 3.23e-20 87.8
Msa0098230 MtrunA17_Chr5g0434931 45.349 86 46 1 12 97 35 119 7.13e-20 85.1
Msa0098230 MtrunA17_Chr7g0240821 48.780 82 41 1 16 97 5 85 1.41e-19 83.6
Msa0098230 MtrunA17_Chr1g0180391 50.000 78 38 1 12 89 19 95 1.42e-19 83.6
Msa0098230 MtrunA17_Chr7g0220341 45.455 88 45 2 12 97 25 111 1.71e-19 84.0
Msa0098230 MtrunA17_Chr5g0441131 47.368 76 39 1 12 87 9 83 7.57e-19 80.5
Msa0098230 MtrunA17_Chr7g0228991 45.349 86 46 1 12 97 29 113 1.15e-18 81.6
Msa0098230 MtrunA17_Chr5g0434831 43.023 86 48 1 12 97 7 91 5.13e-18 78.6
Msa0098230 MtrunA17_Chr8g0334881 42.857 91 50 2 8 97 6 95 5.92e-18 80.5
Msa0098230 MtrunA17_Chr5g0434841 43.023 86 48 1 12 97 20 104 1.12e-17 79.7
Msa0098230 MtrunA17_Chr2g0327821 44.444 81 44 1 9 89 3 82 2.66e-17 77.4
Msa0098230 MtrunA17_Chr4g0013361 42.529 87 48 2 12 97 10 95 9.35e-17 77.0
Msa0098230 MtrunA17_Chr4g0030881 40.909 88 44 2 9 89 4 90 2.07e-15 72.8
Msa0098230 MtrunA17_Chr1g0193901 52.459 61 27 2 10 69 9 68 2.47e-15 69.3
Msa0098230 MtrunA17_Chr1g0193891 52.459 61 27 2 10 69 9 68 2.47e-15 69.3
Msa0098230 MtrunA17_Chr1g0193871 52.459 61 27 2 10 69 9 68 2.47e-15 69.3
Msa0098230 MtrunA17_Chr1g0193881 52.459 61 27 2 10 69 9 68 2.47e-15 69.3
Msa0098230 MtrunA17_Chr5g0401731 44.737 76 40 2 14 89 15 88 6.44e-15 72.0
Msa0098230 MtrunA17_Chr4g0053431 42.857 84 46 2 14 97 5 86 7.25e-15 71.2
Msa0098230 MtrunA17_Chr7g0247131 54.717 53 24 0 45 97 10 62 1.89e-14 70.1
Msa0098230 MtrunA17_Chr6g0454921 41.667 84 47 2 14 97 15 96 6.71e-14 67.8
Msa0098230 MtrunA17_Chr4g0008551 42.857 84 46 2 14 97 38 119 1.08e-13 68.9
Msa0098230 MtrunA17_Chr6g0460661 41.772 79 44 2 11 89 13 89 1.92e-13 65.5
Msa0098230 MtrunA17_Chr7g0247141 51.064 47 23 0 1 47 1 47 2.14e-13 62.8
Msa0098230 MtrunA17_Chr3g0133601 40.476 84 48 2 14 97 37 118 5.44e-13 65.5
Msa0098230 MtrunA17_Chr6g0480581 36.905 84 51 2 14 97 4 85 2.87e-11 60.8
Msa0098230 MtrunA17_Chr5g0417621 39.773 88 47 3 11 94 131 216 5.15e-11 61.2
Msa0098230 MtrunA17_Chr4g0058991 40.964 83 43 4 9 89 204 282 8.63e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098230 AT3G49690.1 72.165 97 27 0 1 97 1 97 2.34e-47 158
Msa0098230 AT5G57620.1 71.134 97 28 0 1 97 1 97 2.74e-47 158
Msa0098230 AT2G36890.1 69.072 97 30 0 1 97 1 97 2.86e-47 157
Msa0098230 AT2G36890.2 69.072 97 30 0 1 97 42 138 4.51e-47 158
Msa0098230 AT5G65790.1 71.134 97 28 0 1 97 1 97 3.68e-46 156
Msa0098230 AT4G37780.1 68.041 97 31 0 1 97 1 97 8.31e-46 154
Msa0098230 AT5G23000.1 65.979 97 33 0 1 97 1 97 1.79e-45 154
Msa0098230 AT5G56110.1 59.794 97 38 1 1 97 1 96 6.09e-37 131
Msa0098230 AT3G01140.2 55.882 102 44 1 1 102 1 101 3.15e-36 130
Msa0098230 AT4G34990.1 38.122 181 105 3 1 180 1 175 4.21e-36 128
Msa0098230 AT2G16720.1 36.066 183 106 4 1 182 1 173 7.33e-36 127
Msa0098230 AT3G23250.1 60.674 89 34 1 1 89 1 88 1.83e-35 126
Msa0098230 AT3G02940.2 60.674 89 34 1 1 89 1 88 2.63e-35 127
Msa0098230 AT5G15310.4 54.902 102 45 1 1 102 1 101 3.01e-35 125
Msa0098230 AT3G28470.1 60.674 89 34 1 1 89 1 88 3.53e-35 126
Msa0098230 AT3G47600.1 42.593 162 75 4 1 162 1 144 3.71e-35 127
Msa0098230 AT3G02940.1 60.674 89 34 1 1 89 1 88 5.00e-35 126
Msa0098230 AT3G02940.3 60.674 89 34 1 1 89 1 88 5.00e-35 126
Msa0098230 AT5G16770.4 60.674 89 34 1 1 89 1 88 5.36e-35 126
Msa0098230 AT5G16770.3 60.674 89 34 1 1 89 1 88 5.36e-35 126
Msa0098230 AT4G28110.1 62.921 89 32 1 1 89 1 88 7.11e-35 125
Msa0098230 AT5G15310.1 54.902 102 45 1 1 102 1 101 8.53e-35 125
Msa0098230 AT5G15310.2 54.902 102 45 1 1 102 1 101 8.70e-35 125
Msa0098230 AT2G31180.1 60.674 89 34 1 1 89 1 88 8.86e-35 124
Msa0098230 AT5G16770.1 60.674 89 34 1 1 89 1 88 1.12e-34 125
Msa0098230 AT5G16770.2 60.674 89 34 1 1 89 1 88 1.12e-34 125
Msa0098230 AT1G22640.1 44.681 141 71 3 1 140 1 135 6.12e-34 122
Msa0098230 AT1G34670.1 56.701 97 41 1 1 97 1 96 6.50e-34 124
Msa0098230 AT1G56160.1 55.208 96 42 1 2 97 4 98 7.67e-34 122
Msa0098230 AT4G05100.1 61.111 90 33 2 1 89 1 89 9.20e-34 123
Msa0098230 AT1G79180.1 60.227 88 34 1 2 89 4 90 2.15e-33 121
Msa0098230 AT1G16490.1 60.227 88 34 1 2 89 4 90 2.60e-33 120
Msa0098230 AT4G38620.1 55.670 97 42 1 1 97 1 96 2.82e-33 120
Msa0098230 AT4G21440.1 58.427 89 36 1 1 89 1 88 2.87e-33 122
Msa0098230 AT3G01140.1 54.545 99 44 1 4 102 47 144 3.29e-33 123
Msa0098230 AT4G09460.1 40.523 153 81 3 1 153 1 143 3.64e-33 119
Msa0098230 AT5G60890.1 56.701 97 41 1 1 97 1 96 3.68e-33 120
Msa0098230 AT5G49330.1 55.670 97 42 1 1 97 1 96 4.25e-33 122
Msa0098230 AT5G62470.2 55.670 97 42 1 1 97 1 96 4.25e-33 122
Msa0098230 AT1G06180.1 60.674 89 34 1 1 89 1 88 8.51e-33 119
Msa0098230 AT3G62610.1 55.670 97 42 1 1 97 1 96 8.93e-33 121
Msa0098230 AT5G26660.1 52.577 97 45 1 1 97 1 96 9.05e-33 121
Msa0098230 AT1G74650.1 48.718 117 54 2 1 117 1 111 9.33e-33 120
Msa0098230 AT4G12350.1 36.667 180 95 4 1 162 1 179 1.61e-32 119
Msa0098230 AT3G28910.1 49.573 117 53 2 1 117 1 111 2.27e-32 119
Msa0098230 AT1G63910.1 52.577 97 45 1 1 97 1 96 2.52e-32 120
Msa0098230 AT1G08810.1 47.863 117 55 2 1 117 1 111 3.79e-32 118
Msa0098230 AT4G17785.2 57.778 90 36 2 1 89 1 89 5.83e-32 119
Msa0098230 AT4G17785.1 57.778 90 36 2 1 89 1 89 6.13e-32 119
Msa0098230 AT3G61250.1 53.608 97 44 1 1 97 1 96 7.58e-32 117
Msa0098230 AT2G47460.1 52.577 97 45 1 1 97 1 96 7.72e-32 119
Msa0098230 AT4G01680.3 53.933 89 40 1 1 89 1 88 1.69e-31 115
Msa0098230 AT3G13890.2 52.577 97 45 1 1 97 1 96 2.38e-31 117
Msa0098230 AT5G14340.1 50.000 108 50 2 1 108 13 116 3.33e-31 115
Msa0098230 AT5G62470.1 55.670 97 41 2 1 97 1 95 5.08e-31 116
Msa0098230 AT5G10280.1 57.303 89 37 1 1 89 1 88 5.25e-31 116
Msa0098230 AT4G01680.1 53.933 89 40 1 1 89 1 88 5.79e-31 116
Msa0098230 AT1G35515.1 34.673 199 109 7 1 188 1 189 6.48e-31 113
Msa0098230 AT5G65230.1 52.577 97 45 1 1 97 1 96 9.16e-31 115
Msa0098230 AT5G07690.1 50.000 104 51 1 1 104 1 103 9.47e-31 115
Msa0098230 AT1G57560.2 55.056 89 39 1 1 89 1 88 1.12e-30 114
Msa0098230 AT1G09540.1 55.056 89 39 1 1 89 1 88 1.27e-30 115
Msa0098230 AT1G57560.1 55.056 89 39 1 1 89 1 88 1.33e-30 114
Msa0098230 AT1G18570.1 60.000 90 34 2 1 89 1 89 1.82e-30 115
Msa0098230 AT5G61420.2 51.546 97 46 1 1 97 1 96 3.31e-30 114
Msa0098230 AT1G66230.1 35.079 191 108 4 1 181 1 185 4.34e-30 112
Msa0098230 AT5G16600.1 51.546 97 46 1 1 97 1 96 5.67e-30 113
Msa0098230 AT4G22680.1 53.933 89 40 1 1 89 1 88 9.74e-30 111
Msa0098230 AT3G12820.1 56.322 87 37 1 3 89 5 90 1.07e-29 110
Msa0098230 AT3G12720.1 52.174 92 43 1 6 97 16 106 1.46e-29 112
Msa0098230 AT3G13540.1 33.636 220 122 7 4 209 15 224 2.73e-29 109
Msa0098230 AT1G74080.1 55.056 89 39 1 1 89 1 88 7.46e-29 110
Msa0098230 AT5G62320.1 33.721 172 101 3 2 167 3 167 8.37e-29 108
Msa0098230 AT3G13890.1 48.113 106 45 2 1 97 1 105 2.44e-28 109
Msa0098230 AT5G07700.1 50.505 99 48 1 1 99 1 98 2.62e-28 108
Msa0098230 AT5G07700.2 50.505 99 48 1 1 99 1 98 2.62e-28 108
Msa0098230 AT5G54230.1 51.546 97 46 1 1 97 1 96 2.67e-28 108
Msa0098230 AT5G35550.1 33.171 205 125 6 9 206 11 210 4.44e-28 107
Msa0098230 AT4G01680.2 47.525 101 40 2 1 89 1 100 1.20e-27 107
Msa0098230 AT1G79180.2 43.802 121 34 2 2 89 4 123 7.22e-27 105
Msa0098230 AT1G18710.1 51.685 89 42 1 1 89 1 88 1.57e-26 102
Msa0098230 AT1G74430.1 51.685 89 42 1 1 89 1 88 3.77e-26 102
Msa0098230 AT3G27810.1 35.912 181 92 5 11 183 19 183 5.75e-26 100
Msa0098230 AT3G08500.1 52.222 90 42 1 8 97 26 114 1.80e-25 101
Msa0098230 AT5G40350.1 51.724 87 41 1 11 97 16 101 2.47e-25 98.6
Msa0098230 AT3G01530.1 50.000 86 42 1 12 97 25 109 2.60e-25 98.2
Msa0098230 AT5G52600.1 42.400 125 61 4 7 121 3 126 4.86e-25 97.4
Msa0098230 AT5G14750.1 51.220 82 39 1 13 94 17 97 8.12e-25 97.1
Msa0098230 AT5G12870.1 52.500 80 37 1 10 89 16 94 4.04e-24 97.1
Msa0098230 AT3G27920.1 47.126 87 45 1 8 94 10 95 7.26e-24 95.1
Msa0098230 AT2G32460.2 50.000 86 42 1 12 97 6 90 9.14e-24 98.6
Msa0098230 AT2G32460.1 50.000 86 42 1 12 97 18 102 9.93e-24 98.2
Msa0098230 AT5G40330.1 50.000 82 40 1 13 94 13 93 1.78e-23 94.0
Msa0098230 AT1G48000.1 51.899 79 37 1 11 89 31 108 2.51e-23 94.0
Msa0098230 AT1G25340.1 50.588 85 41 1 13 97 19 102 3.58e-23 94.4
Msa0098230 AT5G06100.1 48.889 90 45 1 8 97 28 116 3.60e-23 96.7
Msa0098230 AT3G48920.1 47.191 89 46 1 9 97 15 102 4.34e-23 94.0
Msa0098230 AT5G06100.5 48.889 90 45 1 8 97 28 116 4.72e-23 96.7
Msa0098230 AT5G06100.2 48.889 90 45 1 8 97 28 116 4.72e-23 96.7
Msa0098230 AT5G06100.3 48.889 90 45 1 8 97 28 116 4.72e-23 96.7
Msa0098230 AT5G06100.4 48.889 90 45 1 8 97 28 116 4.72e-23 96.7
Msa0098230 AT4G26930.1 52.564 78 36 1 12 89 19 95 4.79e-23 95.5
Msa0098230 AT1G68320.1 37.405 131 76 2 10 140 17 141 5.75e-23 94.0
Msa0098230 AT2G47190.1 48.837 86 43 1 12 97 20 104 6.95e-23 93.6
Msa0098230 AT3G11440.2 46.512 86 45 1 12 97 41 125 1.15e-22 95.1
Msa0098230 AT3G11440.3 46.512 86 45 1 12 97 41 125 2.02e-22 94.7
Msa0098230 AT3G11440.4 46.512 86 45 1 12 97 41 125 2.02e-22 94.7
Msa0098230 AT3G11440.1 46.512 86 45 1 12 97 41 125 2.02e-22 94.7
Msa0098230 AT5G55020.1 51.282 78 37 1 12 89 26 102 2.14e-22 94.7
Msa0098230 AT4G13480.1 51.852 81 38 1 9 89 3 82 3.27e-22 91.3
Msa0098230 AT5G52260.1 49.438 89 44 1 9 97 9 96 7.72e-22 90.5
Msa0098230 AT3G24310.1 50.617 81 39 1 9 89 15 94 1.21e-21 90.1
Msa0098230 AT2G26960.1 49.383 81 40 1 9 89 17 96 1.23e-21 92.0
Msa0098230 AT3G30210.1 48.235 85 43 1 13 97 28 111 2.21e-21 89.4
Msa0098230 AT3G06490.1 50.000 90 44 1 8 97 15 103 5.96e-21 89.0
Msa0098230 AT4G25560.1 44.318 88 48 1 10 97 8 94 9.60e-21 87.8
Msa0098230 AT5G49620.1 50.000 86 42 1 12 97 26 110 3.09e-20 87.0
Msa0098230 AT1G66380.2 43.434 99 53 3 12 108 8 105 1.52e-19 80.5
Msa0098230 AT5G49620.2 51.948 77 36 1 12 88 26 101 1.37e-18 82.8
Msa0098230 AT1G66370.1 39.175 97 54 2 1 97 1 92 4.34e-18 80.1
Msa0098230 AT1G25340.2 45.882 85 40 2 13 97 19 97 6.02e-18 80.1
Msa0098230 AT1G25340.3 45.882 85 40 2 13 97 19 97 6.67e-18 80.5
Msa0098230 AT3G60460.1 41.111 90 51 2 9 97 8 96 1.93e-17 79.3
Msa0098230 AT1G66380.1 43.023 86 48 1 12 97 8 92 3.60e-17 75.1
Msa0098230 AT3G53200.1 43.210 81 45 1 9 89 6 85 2.63e-16 75.1
Msa0098230 AT5G35550.2 31.429 175 109 5 39 206 43 213 6.28e-16 74.3
Msa0098230 AT5G59780.3 40.741 81 47 1 9 89 5 84 6.31e-16 73.9
Msa0098230 AT1G56650.1 41.860 86 49 1 12 97 8 92 8.87e-16 73.9
Msa0098230 AT2G23290.1 45.238 84 44 2 14 97 13 94 1.36e-15 74.3
Msa0098230 AT5G26660.2 51.852 54 26 0 44 97 12 65 1.86e-15 73.9
Msa0098230 AT1G66390.1 41.860 86 49 1 12 97 8 92 2.24e-15 72.8
Msa0098230 AT3G46130.1 40.741 81 47 1 9 89 6 85 3.05e-15 72.4
Msa0098230 AT2G26950.1 38.272 81 49 1 9 89 13 92 3.34e-15 73.6
Msa0098230 AT3G47600.2 36.752 117 57 3 46 162 39 138 7.50e-15 72.4
Msa0098230 AT3G27785.1 44.444 81 43 2 9 89 184 262 8.35e-15 72.8
Msa0098230 AT3G27810.2 30.345 145 80 3 46 183 4 134 2.48e-14 68.6
Msa0098230 AT4G37260.1 41.667 84 47 2 14 97 13 94 2.78e-14 70.5
Msa0098230 AT5G14750.3 51.786 56 24 1 39 94 11 63 4.56e-14 67.8
Msa0098230 AT5G67300.1 40.476 84 48 2 14 97 6 87 1.22e-13 68.6
Msa0098230 AT1G18960.1 41.667 84 45 2 14 97 10 89 1.90e-13 68.2
Msa0098230 AT5G40350.2 61.364 44 17 0 46 89 5 48 2.28e-13 65.9
Msa0098230 AT3G50060.1 44.737 76 40 2 14 89 6 79 2.54e-13 67.8
Msa0098230 AT5G40360.1 39.506 81 47 2 9 89 153 231 1.13e-12 66.2
Msa0098230 AT1G69560.1 40.000 90 48 3 9 94 102 189 1.10e-11 63.2
Msa0098230 AT1G69560.2 40.000 90 48 3 9 94 118 205 1.11e-11 63.2
Msa0098230 AT5G11050.1 38.158 76 45 2 14 89 105 178 1.29e-11 63.5
Msa0098230 AT3G53200.2 54.348 46 21 0 44 89 7 52 3.17e-11 60.8
Msa0098230 AT5G58850.1 38.158 76 45 2 14 89 105 178 3.49e-11 62.0
Msa0098230 AT3G12820.2 58.537 41 17 0 49 89 2 42 4.66e-11 60.1
Msa0098230 AT5G17800.1 41.250 80 45 2 14 93 93 170 9.80e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATCATTGATGGATTT+TGG 0.132955 1_3:+4170244 Msa0098230:CDS
CTCATGGCACTGTTGGAAAT+TGG 0.220126 1_3:+4168147 Msa0098230:CDS
ACTTTATTGTCTAGCATAAT+TGG 0.238985 1_3:-4170094 None:intergenic
CAGCAATATTATTAATCCTT+TGG 0.356887 1_3:+4170162 Msa0098230:CDS
AAGCCTCCATGTTTGATATC+TGG 0.357484 1_3:-4168898 None:intergenic
GATGCTGTAGTATCAGAAAT+TGG 0.363867 1_3:+4170130 Msa0098230:CDS
TTTCACCCTCTATTCTCAAA+TGG 0.370485 1_3:+4168945 Msa0098230:CDS
TCAAGCTGGTGATGAATCTA+TGG 0.374214 1_3:+4170225 Msa0098230:CDS
GTGGGAAGAGTTGCCGTCTA+AGG 0.387864 1_3:+4168857 Msa0098230:CDS
TACAACTTAATTAAATAAGT+TGG 0.401170 1_3:-4168988 None:intergenic
CTTGCAACTCATGGCACTGT+TGG 0.446578 1_3:+4168140 Msa0098230:CDS
TTGAGTGTTGCATCTTCATC+CGG 0.446655 1_3:-4168110 None:intergenic
TGCTACCCATTTGAGAATAG+AGG 0.456147 1_3:-4168951 None:intergenic
TGAATCTATGGAATCATTGA+TGG 0.458518 1_3:+4170237 Msa0098230:CDS
TTCACCCTCTATTCTCAAAT+GGG 0.465064 1_3:+4168946 Msa0098230:CDS
GATAATTCAGCCACCTTAGA+CGG 0.491836 1_3:-4168870 None:intergenic
TCTATTCTCAAATGGGTAGC+AGG 0.500149 1_3:+4168953 Msa0098230:CDS
TCTTAACTGCTTTCCTGAGT+GGG 0.511907 1_3:+4170300 Msa0098230:CDS
AGCATAATTGGAAGTGGTGA+AGG 0.515734 1_3:-4170082 None:intergenic
TTGTCTAGCATAATTGGAAG+TGG 0.518920 1_3:-4170088 None:intergenic
AGAATAGAGGGTGAAAATGA+TGG 0.524462 1_3:-4168938 None:intergenic
TAAGAAAGGACCATGGTCTC+CGG 0.525933 1_3:+4168091 Msa0098230:CDS
TGCAAATGGCAGGACTTAAG+AGG 0.526442 1_3:+4168833 Msa0098230:intron
CTGAGGCCAGATATCAAACA+TGG 0.554389 1_3:+4168892 Msa0098230:CDS
TGGCAGGACTTAAGAGGTGT+GGG 0.558861 1_3:+4168839 Msa0098230:intron
AAGAGTTATCTTGCAACTCA+TGG 0.560977 1_3:+4168131 Msa0098230:CDS
GTTGAGTGAGAGAGTAGCCA+TGG 0.563082 1_3:+4168037 Msa0098230:exon
ATCTTAACTGCTTTCCTGAG+TGG 0.564962 1_3:+4170299 Msa0098230:CDS
GACAAAGAGAAAGTTAAGAA+AGG 0.569014 1_3:+4168077 Msa0098230:CDS
TGGAGGCTTCACTGAAGAAG+AGG 0.582932 1_3:+4168912 Msa0098230:CDS
ATGGCAGGACTTAAGAGGTG+TGG 0.587133 1_3:+4168838 Msa0098230:intron
ATAATTGGAAGTGGTGAAGG+TGG 0.597724 1_3:-4170079 None:intergenic
GCTACCCATTTGAGAATAGA+GGG 0.601575 1_3:-4168950 None:intergenic
GCATCTTCATCCGGAGACCA+TGG 0.603078 1_3:-4168101 None:intergenic
TCTTGAGAAATTGACACCAA+AGG 0.604458 1_3:-4170178 None:intergenic
TAACTAAAATCAACCCACTC+AGG 0.606546 1_3:-4170313 None:intergenic
GGAAGAGTTGCCGTCTAAGG+TGG 0.612402 1_3:+4168860 Msa0098230:CDS
TTGAGTGAGAGAGTAGCCAT+GGG 0.612925 1_3:+4168038 Msa0098230:exon
ACTTTCTCTTTGTCACAACA+AGG 0.613328 1_3:-4168068 None:intergenic
ATTGCAATTCAAGATCAAGC+TGG 0.635582 1_3:+4170211 Msa0098230:CDS
ACAACAAGGAGCTCTTCCCA+TGG 0.643741 1_3:-4168054 None:intergenic
TAAGGTGGCTGAATTATCTG+AGG 0.651967 1_3:+4168875 Msa0098230:CDS
TCATTGACATGATCATCATG+AGG 0.679338 1_3:-4170277 None:intergenic
AGAAAGTTAAGAAAGGACCA+TGG 0.711372 1_3:+4168084 Msa0098230:CDS
AGGCCAGATATCAAACATGG+AGG 0.739482 1_3:+4168895 Msa0098230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAATTACATCA+AGG + chr1_3:4168537-4168556 Msa0098230:intron 10.0%
!!! TTTTTTTAAAATCATGTTAT+TGG - chr1_3:4169655-4169674 None:intergenic 10.0%
!!! TTTTTTTTTAAATTACATCA+AGG + chr1_3:4168537-4168556 Msa0098230:intron 10.0%
!!! TTTTTTTAAAATCATGTTAT+TGG - chr1_3:4169655-4169674 None:intergenic 10.0%
!!! TTTTTATTCTATGATTTTCT+TGG + chr1_3:4168233-4168252 Msa0098230:intron 15.0%
!! TAAGATAGATTAAATTTAAC+AGG - chr1_3:4168626-4168645 None:intergenic 15.0%
!! TTATTAGAAAAAAGTAAACA+TGG + chr1_3:4168684-4168703 Msa0098230:intron 15.0%
!! ATTAATTAATGATATGCAAA+TGG + chr1_3:4168819-4168838 Msa0098230:intron 15.0%
!! TACAACTTAATTAAATAAGT+TGG - chr1_3:4168991-4169010 None:intergenic 15.0%
!! CGTTTATAATAATAACAATT+TGG - chr1_3:4169035-4169054 None:intergenic 15.0%
!!! TGAAATTTAAATTTTAGTCT+CGG - chr1_3:4169330-4169349 None:intergenic 15.0%
!! ACTAAAATTTAAATTTCAGT+TGG + chr1_3:4169332-4169351 Msa0098230:intron 15.0%
!! CTAAAATTTAAATTTCAGTT+GGG + chr1_3:4169333-4169352 Msa0098230:intron 15.0%
!!! ATATTCTATAACCATTTTTT+GGG - chr1_3:4169620-4169639 None:intergenic 15.0%
!!! TATATTCTATAACCATTTTT+TGG - chr1_3:4169621-4169640 None:intergenic 15.0%
!! TTAAAAAAAGTGAGAAATTA+TGG + chr1_3:4169666-4169685 Msa0098230:intron 15.0%
!!! TTTTTATTCTATGATTTTCT+TGG + chr1_3:4168233-4168252 Msa0098230:intron 15.0%
!! TAAGATAGATTAAATTTAAC+AGG - chr1_3:4168626-4168645 None:intergenic 15.0%
!! TTATTAGAAAAAAGTAAACA+TGG + chr1_3:4168684-4168703 Msa0098230:intron 15.0%
!! ATTAATTAATGATATGCAAA+TGG + chr1_3:4168819-4168838 Msa0098230:intron 15.0%
!! TACAACTTAATTAAATAAGT+TGG - chr1_3:4168991-4169010 None:intergenic 15.0%
!! CGTTTATAATAATAACAATT+TGG - chr1_3:4169035-4169054 None:intergenic 15.0%
!!! TGAAATTTAAATTTTAGTCT+CGG - chr1_3:4169330-4169349 None:intergenic 15.0%
!! ACTAAAATTTAAATTTCAGT+TGG + chr1_3:4169332-4169351 Msa0098230:intron 15.0%
!! CTAAAATTTAAATTTCAGTT+GGG + chr1_3:4169333-4169352 Msa0098230:intron 15.0%
!!! ATATTCTATAACCATTTTTT+GGG - chr1_3:4169620-4169639 None:intergenic 15.0%
!!! TATATTCTATAACCATTTTT+TGG - chr1_3:4169621-4169640 None:intergenic 15.0%
!! TTAAAAAAAGTGAGAAATTA+TGG + chr1_3:4169666-4169685 Msa0098230:intron 15.0%
!! TGTAATTAAGATCACAAAAT+TGG - chr1_3:4168276-4168295 None:intergenic 20.0%
!! AATTAATTTCGTCACTAATT+TGG + chr1_3:4168711-4168730 Msa0098230:intron 20.0%
!! GCAAAAGCAAAAAATAAATT+TGG - chr1_3:4168769-4168788 None:intergenic 20.0%
!!! ATTTTTTATAGTCAGTTGAA+TGG + chr1_3:4169757-4169776 Msa0098230:intron 20.0%
!!! AATTGATTTCTGAATTTTGA+GGG - chr1_3:4170033-4170052 None:intergenic 20.0%
!!! AAATTGATTTCTGAATTTTG+AGG - chr1_3:4170034-4170053 None:intergenic 20.0%
!! TGTAATTAAGATCACAAAAT+TGG - chr1_3:4168276-4168295 None:intergenic 20.0%
!! AATTAATTTCGTCACTAATT+TGG + chr1_3:4168711-4168730 Msa0098230:intron 20.0%
!! GCAAAAGCAAAAAATAAATT+TGG - chr1_3:4168769-4168788 None:intergenic 20.0%
!!! ATTTTTTATAGTCAGTTGAA+TGG + chr1_3:4169757-4169776 Msa0098230:intron 20.0%
!!! AATTGATTTCTGAATTTTGA+GGG - chr1_3:4170033-4170052 None:intergenic 20.0%
!!! AAATTGATTTCTGAATTTTG+AGG - chr1_3:4170034-4170053 None:intergenic 20.0%
!!! AGAAAAAAACCAGCTTTTTT+GGG - chr1_3:4168182-4168201 None:intergenic 25.0%
!!! AAGAAAAAAACCAGCTTTTT+TGG - chr1_3:4168183-4168202 None:intergenic 25.0%
!!! CAAAATTGGTTTGTGAAAAA+GGG - chr1_3:4168262-4168281 None:intergenic 25.0%
!!! ACAAAATTGGTTTGTGAAAA+AGG - chr1_3:4168263-4168282 None:intergenic 25.0%
!! TTTTTATGCTTGATGTGAAA+GGG - chr1_3:4168409-4168428 None:intergenic 25.0%
!! AAAAACAGGACTTGTATTTT+TGG + chr1_3:4168424-4168443 Msa0098230:intron 25.0%
!!! TTATGCACATTTTATTTGTG+AGG + chr1_3:4168458-4168477 Msa0098230:intron 25.0%
! ATAGATTAAATTTAACAGGC+TGG - chr1_3:4168622-4168641 None:intergenic 25.0%
!! GATTTTTAATGTGTACAAGT+TGG + chr1_3:4169196-4169215 Msa0098230:intron 25.0%
! AGAAATTATAACAACCAACT+AGG + chr1_3:4169252-4169271 Msa0098230:intron 25.0%
! GAAATTATAACAACCAACTA+GGG + chr1_3:4169253-4169272 Msa0098230:intron 25.0%
! ACAGAAAAAATGTGATTAGA+AGG + chr1_3:4169515-4169534 Msa0098230:intron 25.0%
!!! ATTTTTTGGGTCTTAATCTT+GGG - chr1_3:4169607-4169626 None:intergenic 25.0%
! ACAATGATGTGAAAAACTAT+TGG + chr1_3:4169902-4169921 Msa0098230:intron 25.0%
!! AAAACTGAAGAAGAAGATTT+TGG + chr1_3:4169930-4169949 Msa0098230:intron 25.0%
!!! AGTATTGTCATTTTAGTCAA+TGG - chr1_3:4169976-4169995 None:intergenic 25.0%
! ACTTTATTGTCTAGCATAAT+TGG - chr1_3:4170097-4170116 None:intergenic 25.0%
! CAGCAATATTATTAATCCTT+TGG + chr1_3:4170162-4170181 Msa0098230:CDS 25.0%
!!! AGAAAAAAACCAGCTTTTTT+GGG - chr1_3:4168182-4168201 None:intergenic 25.0%
!!! AAGAAAAAAACCAGCTTTTT+TGG - chr1_3:4168183-4168202 None:intergenic 25.0%
!!! CAAAATTGGTTTGTGAAAAA+GGG - chr1_3:4168262-4168281 None:intergenic 25.0%
!!! ACAAAATTGGTTTGTGAAAA+AGG - chr1_3:4168263-4168282 None:intergenic 25.0%
!! TTTTTATGCTTGATGTGAAA+GGG - chr1_3:4168409-4168428 None:intergenic 25.0%
!! AAAAACAGGACTTGTATTTT+TGG + chr1_3:4168424-4168443 Msa0098230:intron 25.0%
!!! TTATGCACATTTTATTTGTG+AGG + chr1_3:4168458-4168477 Msa0098230:intron 25.0%
! ATAGATTAAATTTAACAGGC+TGG - chr1_3:4168622-4168641 None:intergenic 25.0%
!! GATTTTTAATGTGTACAAGT+TGG + chr1_3:4169196-4169215 Msa0098230:intron 25.0%
! AGAAATTATAACAACCAACT+AGG + chr1_3:4169252-4169271 Msa0098230:intron 25.0%
! GAAATTATAACAACCAACTA+GGG + chr1_3:4169253-4169272 Msa0098230:intron 25.0%
! ACAGAAAAAATGTGATTAGA+AGG + chr1_3:4169515-4169534 Msa0098230:intron 25.0%
!!! ATTTTTTGGGTCTTAATCTT+GGG - chr1_3:4169607-4169626 None:intergenic 25.0%
! ACAATGATGTGAAAAACTAT+TGG + chr1_3:4169902-4169921 Msa0098230:intron 25.0%
!! AAAACTGAAGAAGAAGATTT+TGG + chr1_3:4169930-4169949 Msa0098230:intron 25.0%
!!! AGTATTGTCATTTTAGTCAA+TGG - chr1_3:4169976-4169995 None:intergenic 25.0%
! ACTTTATTGTCTAGCATAAT+TGG - chr1_3:4170097-4170116 None:intergenic 25.0%
! CAGCAATATTATTAATCCTT+TGG + chr1_3:4170162-4170181 Msa0098230:CDS 25.0%
GACAAAGAGAAAGTTAAGAA+AGG + chr1_3:4168077-4168096 Msa0098230:CDS 30.0%
AAAAAAAACAATGGGAAGAG+AGG - chr1_3:4168206-4168225 None:intergenic 30.0%
!! CTGTTGATAACACTTCAAAT+TGG - chr1_3:4168347-4168366 None:intergenic 30.0%
GTTATCAACAGACATGAAAA+TGG + chr1_3:4168356-4168375 Msa0098230:intron 30.0%
! TTTTATGCTTGATGTGAAAG+GGG - chr1_3:4168408-4168427 None:intergenic 30.0%
! GTTTTTATGCTTGATGTGAA+AGG - chr1_3:4168410-4168429 None:intergenic 30.0%
TTCACATCAAGCATAAAAAC+AGG + chr1_3:4168410-4168429 Msa0098230:intron 30.0%
ATTAATGATATGCAAATGGC+AGG + chr1_3:4168823-4168842 Msa0098230:intron 30.0%
TTCCCATGATGTTATAAACT+AGG + chr1_3:4169300-4169319 Msa0098230:intron 30.0%
TCCCATGATGTTATAAACTA+GGG + chr1_3:4169301-4169320 Msa0098230:intron 30.0%
TCCCTAGTTTATAACATCAT+GGG - chr1_3:4169305-4169324 None:intergenic 30.0%
ATCCCTAGTTTATAACATCA+TGG - chr1_3:4169306-4169325 None:intergenic 30.0%
! ATGTCGTATTTAGAGTTTGA+TGG + chr1_3:4169360-4169379 Msa0098230:intron 30.0%
TAATTTCTCACTTTGACTGA+AGG - chr1_3:4169406-4169425 None:intergenic 30.0%
!!! TTTTTTGGGTCTTAATCTTG+GGG - chr1_3:4169606-4169625 None:intergenic 30.0%
!!! CATTTTTTGGGTCTTAATCT+TGG - chr1_3:4169608-4169627 None:intergenic 30.0%
CAAGATTAAGACCCAAAAAA+TGG + chr1_3:4169606-4169625 Msa0098230:intron 30.0%
GTACTATGAAACTAACTTTG+AGG - chr1_3:4169784-4169803 None:intergenic 30.0%
TAGTTTCATAGTACTTCAAG+AGG + chr1_3:4169790-4169809 Msa0098230:intron 30.0%
TGAGAACTATTCAAACTTTG+AGG - chr1_3:4169822-4169841 None:intergenic 30.0%
! AATTTGTGATTTTGTGCAGA+TGG + chr1_3:4169845-4169864 Msa0098230:intron 30.0%
!!! AATGTTGATTTTGTGAAGCA+GGG - chr1_3:4170057-4170076 None:intergenic 30.0%
TGAATCTATGGAATCATTGA+TGG + chr1_3:4170237-4170256 Msa0098230:CDS 30.0%
!!! ATGGAATCATTGATGGATTT+TGG + chr1_3:4170244-4170263 Msa0098230:CDS 30.0%
GACAAAGAGAAAGTTAAGAA+AGG + chr1_3:4168077-4168096 Msa0098230:CDS 30.0%
AAAAAAAACAATGGGAAGAG+AGG - chr1_3:4168206-4168225 None:intergenic 30.0%
!! CTGTTGATAACACTTCAAAT+TGG - chr1_3:4168347-4168366 None:intergenic 30.0%
GTTATCAACAGACATGAAAA+TGG + chr1_3:4168356-4168375 Msa0098230:intron 30.0%
! TTTTATGCTTGATGTGAAAG+GGG - chr1_3:4168408-4168427 None:intergenic 30.0%
! GTTTTTATGCTTGATGTGAA+AGG - chr1_3:4168410-4168429 None:intergenic 30.0%
TTCACATCAAGCATAAAAAC+AGG + chr1_3:4168410-4168429 Msa0098230:intron 30.0%
ATTAATGATATGCAAATGGC+AGG + chr1_3:4168823-4168842 Msa0098230:intron 30.0%
TTCCCATGATGTTATAAACT+AGG + chr1_3:4169300-4169319 Msa0098230:intron 30.0%
TCCCATGATGTTATAAACTA+GGG + chr1_3:4169301-4169320 Msa0098230:intron 30.0%
TCCCTAGTTTATAACATCAT+GGG - chr1_3:4169305-4169324 None:intergenic 30.0%
ATCCCTAGTTTATAACATCA+TGG - chr1_3:4169306-4169325 None:intergenic 30.0%
! ATGTCGTATTTAGAGTTTGA+TGG + chr1_3:4169360-4169379 Msa0098230:intron 30.0%
TAATTTCTCACTTTGACTGA+AGG - chr1_3:4169406-4169425 None:intergenic 30.0%
!!! TTTTTTGGGTCTTAATCTTG+GGG - chr1_3:4169606-4169625 None:intergenic 30.0%
!!! CATTTTTTGGGTCTTAATCT+TGG - chr1_3:4169608-4169627 None:intergenic 30.0%
CAAGATTAAGACCCAAAAAA+TGG + chr1_3:4169606-4169625 Msa0098230:intron 30.0%
GTACTATGAAACTAACTTTG+AGG - chr1_3:4169784-4169803 None:intergenic 30.0%
TAGTTTCATAGTACTTCAAG+AGG + chr1_3:4169790-4169809 Msa0098230:intron 30.0%
TGAGAACTATTCAAACTTTG+AGG - chr1_3:4169822-4169841 None:intergenic 30.0%
! AATTTGTGATTTTGTGCAGA+TGG + chr1_3:4169845-4169864 Msa0098230:intron 30.0%
!!! AATGTTGATTTTGTGAAGCA+GGG - chr1_3:4170057-4170076 None:intergenic 30.0%
TGAATCTATGGAATCATTGA+TGG + chr1_3:4170237-4170256 Msa0098230:CDS 30.0%
!!! ATGGAATCATTGATGGATTT+TGG + chr1_3:4170244-4170263 Msa0098230:CDS 30.0%
ACTTTCTCTTTGTCACAACA+AGG - chr1_3:4168071-4168090 None:intergenic 35.0%
AGAAAGTTAAGAAAGGACCA+TGG + chr1_3:4168084-4168103 Msa0098230:CDS 35.0%
AAGAGTTATCTTGCAACTCA+TGG + chr1_3:4168131-4168150 Msa0098230:CDS 35.0%
AGAATAGAGGGTGAAAATGA+TGG - chr1_3:4168941-4168960 None:intergenic 35.0%
TTTCACCCTCTATTCTCAAA+TGG + chr1_3:4168945-4168964 Msa0098230:CDS 35.0%
TTCACCCTCTATTCTCAAAT+GGG + chr1_3:4168946-4168965 Msa0098230:CDS 35.0%
CACTTAGACCAACATTATGT+CGG - chr1_3:4169440-4169459 None:intergenic 35.0%
! AATGTTGGTCTAAGTGTAAC+TGG + chr1_3:4169444-4169463 Msa0098230:intron 35.0%
GGAGAGAAACTACTAAATGT+TGG + chr1_3:4169536-4169555 Msa0098230:intron 35.0%
! TGGAACTTTGAGTTAGTGAT+GGG - chr1_3:4170009-4170028 None:intergenic 35.0%
! TTGGAACTTTGAGTTAGTGA+TGG - chr1_3:4170010-4170029 None:intergenic 35.0%
!! GATTTCTGAATTTTGAGGGT+TGG - chr1_3:4170029-4170048 None:intergenic 35.0%
!!! GAATGTTGATTTTGTGAAGC+AGG - chr1_3:4170058-4170077 None:intergenic 35.0%
TTGTCTAGCATAATTGGAAG+TGG - chr1_3:4170091-4170110 None:intergenic 35.0%
GATGCTGTAGTATCAGAAAT+TGG + chr1_3:4170130-4170149 Msa0098230:CDS 35.0%
TCTTGAGAAATTGACACCAA+AGG - chr1_3:4170181-4170200 None:intergenic 35.0%
ATTGCAATTCAAGATCAAGC+TGG + chr1_3:4170211-4170230 Msa0098230:CDS 35.0%
!!! TCATTGATGGATTTTGGCTT+TGG + chr1_3:4170250-4170269 Msa0098230:CDS 35.0%
TCATTGACATGATCATCATG+AGG - chr1_3:4170280-4170299 None:intergenic 35.0%
TAACTAAAATCAACCCACTC+AGG - chr1_3:4170316-4170335 None:intergenic 35.0%
ACTTTCTCTTTGTCACAACA+AGG - chr1_3:4168071-4168090 None:intergenic 35.0%
AGAAAGTTAAGAAAGGACCA+TGG + chr1_3:4168084-4168103 Msa0098230:CDS 35.0%
AAGAGTTATCTTGCAACTCA+TGG + chr1_3:4168131-4168150 Msa0098230:CDS 35.0%
AGAATAGAGGGTGAAAATGA+TGG - chr1_3:4168941-4168960 None:intergenic 35.0%
TTTCACCCTCTATTCTCAAA+TGG + chr1_3:4168945-4168964 Msa0098230:CDS 35.0%
TTCACCCTCTATTCTCAAAT+GGG + chr1_3:4168946-4168965 Msa0098230:CDS 35.0%
CACTTAGACCAACATTATGT+CGG - chr1_3:4169440-4169459 None:intergenic 35.0%
! AATGTTGGTCTAAGTGTAAC+TGG + chr1_3:4169444-4169463 Msa0098230:intron 35.0%
GGAGAGAAACTACTAAATGT+TGG + chr1_3:4169536-4169555 Msa0098230:intron 35.0%
! TGGAACTTTGAGTTAGTGAT+GGG - chr1_3:4170009-4170028 None:intergenic 35.0%
! TTGGAACTTTGAGTTAGTGA+TGG - chr1_3:4170010-4170029 None:intergenic 35.0%
!! GATTTCTGAATTTTGAGGGT+TGG - chr1_3:4170029-4170048 None:intergenic 35.0%
!!! GAATGTTGATTTTGTGAAGC+AGG - chr1_3:4170058-4170077 None:intergenic 35.0%
TTGTCTAGCATAATTGGAAG+TGG - chr1_3:4170091-4170110 None:intergenic 35.0%
GATGCTGTAGTATCAGAAAT+TGG + chr1_3:4170130-4170149 Msa0098230:CDS 35.0%
TCTTGAGAAATTGACACCAA+AGG - chr1_3:4170181-4170200 None:intergenic 35.0%
ATTGCAATTCAAGATCAAGC+TGG + chr1_3:4170211-4170230 Msa0098230:CDS 35.0%
!!! TCATTGATGGATTTTGGCTT+TGG + chr1_3:4170250-4170269 Msa0098230:CDS 35.0%
TCATTGACATGATCATCATG+AGG - chr1_3:4170280-4170299 None:intergenic 35.0%
TAACTAAAATCAACCCACTC+AGG - chr1_3:4170316-4170335 None:intergenic 35.0%
! TTGAGTGTTGCATCTTCATC+CGG - chr1_3:4168113-4168132 None:intergenic 40.0%
ATTGCATTGCCCAAAAAAGC+TGG + chr1_3:4168170-4168189 Msa0098230:CDS 40.0%
GATAATTCAGCCACCTTAGA+CGG - chr1_3:4168873-4168892 None:intergenic 40.0%
TAAGGTGGCTGAATTATCTG+AGG + chr1_3:4168875-4168894 Msa0098230:CDS 40.0%
AAGCCTCCATGTTTGATATC+TGG - chr1_3:4168901-4168920 None:intergenic 40.0%
GCTACCCATTTGAGAATAGA+GGG - chr1_3:4168953-4168972 None:intergenic 40.0%
TGCTACCCATTTGAGAATAG+AGG - chr1_3:4168954-4168973 None:intergenic 40.0%
TCTATTCTCAAATGGGTAGC+AGG + chr1_3:4168953-4168972 Msa0098230:CDS 40.0%
TAGGGTTGAGTCAACTTGAA+GGG + chr1_3:4169271-4169290 Msa0098230:intron 40.0%
TGGTCTAAGTGTAACTGGAT+TGG + chr1_3:4169449-4169468 Msa0098230:intron 40.0%
GGAAAGACCATAATCATCAC+GGG - chr1_3:4169585-4169604 None:intergenic 40.0%
GGGAAAGACCATAATCATCA+CGG - chr1_3:4169586-4169605 None:intergenic 40.0%
!! CTGAAGAAGAAGATTTTGGC+AGG + chr1_3:4169934-4169953 Msa0098230:intron 40.0%
!! TGAGTTAGTGATGGGTTGAA+GGG - chr1_3:4170001-4170020 None:intergenic 40.0%
!! TTGAGTTAGTGATGGGTTGA+AGG - chr1_3:4170002-4170021 None:intergenic 40.0%
ATAATTGGAAGTGGTGAAGG+TGG - chr1_3:4170082-4170101 None:intergenic 40.0%
AGCATAATTGGAAGTGGTGA+AGG - chr1_3:4170085-4170104 None:intergenic 40.0%
! TCAAGCTGGTGATGAATCTA+TGG + chr1_3:4170225-4170244 Msa0098230:CDS 40.0%
ATCTTAACTGCTTTCCTGAG+TGG + chr1_3:4170299-4170318 Msa0098230:CDS 40.0%
TCTTAACTGCTTTCCTGAGT+GGG + chr1_3:4170300-4170319 Msa0098230:CDS 40.0%
! TTGAGTGTTGCATCTTCATC+CGG - chr1_3:4168113-4168132 None:intergenic 40.0%
ATTGCATTGCCCAAAAAAGC+TGG + chr1_3:4168170-4168189 Msa0098230:CDS 40.0%
GATAATTCAGCCACCTTAGA+CGG - chr1_3:4168873-4168892 None:intergenic 40.0%
TAAGGTGGCTGAATTATCTG+AGG + chr1_3:4168875-4168894 Msa0098230:CDS 40.0%
AAGCCTCCATGTTTGATATC+TGG - chr1_3:4168901-4168920 None:intergenic 40.0%
GCTACCCATTTGAGAATAGA+GGG - chr1_3:4168953-4168972 None:intergenic 40.0%
TGCTACCCATTTGAGAATAG+AGG - chr1_3:4168954-4168973 None:intergenic 40.0%
TCTATTCTCAAATGGGTAGC+AGG + chr1_3:4168953-4168972 Msa0098230:CDS 40.0%
TAGGGTTGAGTCAACTTGAA+GGG + chr1_3:4169271-4169290 Msa0098230:intron 40.0%
TGGTCTAAGTGTAACTGGAT+TGG + chr1_3:4169449-4169468 Msa0098230:intron 40.0%
GGAAAGACCATAATCATCAC+GGG - chr1_3:4169585-4169604 None:intergenic 40.0%
GGGAAAGACCATAATCATCA+CGG - chr1_3:4169586-4169605 None:intergenic 40.0%
!! CTGAAGAAGAAGATTTTGGC+AGG + chr1_3:4169934-4169953 Msa0098230:intron 40.0%
!! TGAGTTAGTGATGGGTTGAA+GGG - chr1_3:4170001-4170020 None:intergenic 40.0%
!! TTGAGTTAGTGATGGGTTGA+AGG - chr1_3:4170002-4170021 None:intergenic 40.0%
ATAATTGGAAGTGGTGAAGG+TGG - chr1_3:4170082-4170101 None:intergenic 40.0%
AGCATAATTGGAAGTGGTGA+AGG - chr1_3:4170085-4170104 None:intergenic 40.0%
! TCAAGCTGGTGATGAATCTA+TGG + chr1_3:4170225-4170244 Msa0098230:CDS 40.0%
ATCTTAACTGCTTTCCTGAG+TGG + chr1_3:4170299-4170318 Msa0098230:CDS 40.0%
TCTTAACTGCTTTCCTGAGT+GGG + chr1_3:4170300-4170319 Msa0098230:CDS 40.0%
TTGAGTGAGAGAGTAGCCAT+GGG + chr1_3:4168038-4168057 Msa0098230:exon 45.0%
TAAGAAAGGACCATGGTCTC+CGG + chr1_3:4168091-4168110 Msa0098230:CDS 45.0%
CTCATGGCACTGTTGGAAAT+TGG + chr1_3:4168147-4168166 Msa0098230:CDS 45.0%
TGCAAATGGCAGGACTTAAG+AGG + chr1_3:4168833-4168852 Msa0098230:intron 45.0%
CTGAGGCCAGATATCAAACA+TGG + chr1_3:4168892-4168911 Msa0098230:CDS 45.0%
AGGCCAGATATCAAACATGG+AGG + chr1_3:4168895-4168914 Msa0098230:CDS 45.0%
! CAAGTTGACTCAACCCTAGT+TGG - chr1_3:4169269-4169288 None:intergenic 45.0%
CTAGGGTTGAGTCAACTTGA+AGG + chr1_3:4169270-4169289 Msa0098230:intron 45.0%
AGGGTTGAGTCAACTTGAAG+GGG + chr1_3:4169272-4169291 Msa0098230:intron 45.0%
CCAACATTATGTCGGACTGT+CGG - chr1_3:4169432-4169451 None:intergenic 45.0%
TGTCGAACCCGTGATGATTA+TGG + chr1_3:4169575-4169594 Msa0098230:intron 45.0%
GCCATAGCATCTAAACTACC+TGG + chr1_3:4169871-4169890 Msa0098230:intron 45.0%
GCCAGGTAGTTTAGATGCTA+TGG - chr1_3:4169875-4169894 None:intergenic 45.0%
ACATCATTGTCTGTTCTGCC+AGG - chr1_3:4169892-4169911 None:intergenic 45.0%
TTGAGTGAGAGAGTAGCCAT+GGG + chr1_3:4168038-4168057 Msa0098230:exon 45.0%
TAAGAAAGGACCATGGTCTC+CGG + chr1_3:4168091-4168110 Msa0098230:CDS 45.0%
CTCATGGCACTGTTGGAAAT+TGG + chr1_3:4168147-4168166 Msa0098230:CDS 45.0%
TGCAAATGGCAGGACTTAAG+AGG + chr1_3:4168833-4168852 Msa0098230:intron 45.0%
CTGAGGCCAGATATCAAACA+TGG + chr1_3:4168892-4168911 Msa0098230:CDS 45.0%
AGGCCAGATATCAAACATGG+AGG + chr1_3:4168895-4168914 Msa0098230:CDS 45.0%
! CAAGTTGACTCAACCCTAGT+TGG - chr1_3:4169269-4169288 None:intergenic 45.0%
CTAGGGTTGAGTCAACTTGA+AGG + chr1_3:4169270-4169289 Msa0098230:intron 45.0%
AGGGTTGAGTCAACTTGAAG+GGG + chr1_3:4169272-4169291 Msa0098230:intron 45.0%
CCAACATTATGTCGGACTGT+CGG - chr1_3:4169432-4169451 None:intergenic 45.0%
TGTCGAACCCGTGATGATTA+TGG + chr1_3:4169575-4169594 Msa0098230:intron 45.0%
GCCATAGCATCTAAACTACC+TGG + chr1_3:4169871-4169890 Msa0098230:intron 45.0%
GCCAGGTAGTTTAGATGCTA+TGG - chr1_3:4169875-4169894 None:intergenic 45.0%
ACATCATTGTCTGTTCTGCC+AGG - chr1_3:4169892-4169911 None:intergenic 45.0%
!! AAAAATAAAAAAAAAACAAT+GGG - chr1_3:4168214-4168233 None:intergenic 5.0%
!! AAAAAATAAAAAAAAAACAA+TGG - chr1_3:4168215-4168234 None:intergenic 5.0%
!! TTAATTAATTAATTATCTAT+AGG - chr1_3:4168808-4168827 None:intergenic 5.0%
!! AAAAATAAAAAAAAAACAAT+GGG - chr1_3:4168214-4168233 None:intergenic 5.0%
!! AAAAAATAAAAAAAAAACAA+TGG - chr1_3:4168215-4168234 None:intergenic 5.0%
!! TTAATTAATTAATTATCTAT+AGG - chr1_3:4168808-4168827 None:intergenic 5.0%
GTTGAGTGAGAGAGTAGCCA+TGG + chr1_3:4168037-4168056 Msa0098230:exon 50.0%
ACAACAAGGAGCTCTTCCCA+TGG - chr1_3:4168057-4168076 None:intergenic 50.0%
CTTGCAACTCATGGCACTGT+TGG + chr1_3:4168140-4168159 Msa0098230:CDS 50.0%
ATGGCAGGACTTAAGAGGTG+TGG + chr1_3:4168838-4168857 Msa0098230:intron 50.0%
! TGGCAGGACTTAAGAGGTGT+GGG + chr1_3:4168839-4168858 Msa0098230:intron 50.0%
TGGAGGCTTCACTGAAGAAG+AGG + chr1_3:4168912-4168931 Msa0098230:CDS 50.0%
CCGACAGTCCGACATAATGT+TGG + chr1_3:4169429-4169448 Msa0098230:intron 50.0%
GTTGAGTGAGAGAGTAGCCA+TGG + chr1_3:4168037-4168056 Msa0098230:exon 50.0%
ACAACAAGGAGCTCTTCCCA+TGG - chr1_3:4168057-4168076 None:intergenic 50.0%
CTTGCAACTCATGGCACTGT+TGG + chr1_3:4168140-4168159 Msa0098230:CDS 50.0%
ATGGCAGGACTTAAGAGGTG+TGG + chr1_3:4168838-4168857 Msa0098230:intron 50.0%
! TGGCAGGACTTAAGAGGTGT+GGG + chr1_3:4168839-4168858 Msa0098230:intron 50.0%
TGGAGGCTTCACTGAAGAAG+AGG + chr1_3:4168912-4168931 Msa0098230:CDS 50.0%
CCGACAGTCCGACATAATGT+TGG + chr1_3:4169429-4169448 Msa0098230:intron 50.0%
GCATCTTCATCCGGAGACCA+TGG - chr1_3:4168104-4168123 None:intergenic 55.0%
GTGGGAAGAGTTGCCGTCTA+AGG + chr1_3:4168857-4168876 Msa0098230:CDS 55.0%
GGAAGAGTTGCCGTCTAAGG+TGG + chr1_3:4168860-4168879 Msa0098230:CDS 55.0%
GCATCTTCATCCGGAGACCA+TGG - chr1_3:4168104-4168123 None:intergenic 55.0%
GTGGGAAGAGTTGCCGTCTA+AGG + chr1_3:4168857-4168876 Msa0098230:CDS 55.0%
GGAAGAGTTGCCGTCTAAGG+TGG + chr1_3:4168860-4168879 Msa0098230:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4168009 4170357 4168009 ID=Msa0098230;Name=Msa0098230
chr1_3 mRNA 4168009 4170357 4168009 ID=Msa0098230-mRNA-1;Parent=Msa0098230;Name=Msa0098230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=47|0.5|0.33|1|0.5|0.66|3|0|210
chr1_3 exon 4168009 4168191 4168009 ID=Msa0098230-mRNA-1:exon:1350;Parent=Msa0098230-mRNA-1
chr1_3 exon 4168845 4169007 4168845 ID=Msa0098230-mRNA-1:exon:1351;Parent=Msa0098230-mRNA-1
chr1_3 exon 4170024 4170357 4170024 ID=Msa0098230-mRNA-1:exon:1352;Parent=Msa0098230-mRNA-1
chr1_3 five_prime_UTR 4168009 4168055 4168009 ID=Msa0098230-mRNA-1:five_prime_utr;Parent=Msa0098230-mRNA-1
chr1_3 CDS 4168056 4168191 4168056 ID=Msa0098230-mRNA-1:cds;Parent=Msa0098230-mRNA-1
chr1_3 CDS 4168845 4169007 4168845 ID=Msa0098230-mRNA-1:cds;Parent=Msa0098230-mRNA-1
chr1_3 CDS 4170024 4170357 4170024 ID=Msa0098230-mRNA-1:cds;Parent=Msa0098230-mRNA-1
Gene Sequence

>Msa0098230

ATGGGAAGAGCTCCTTGTTGTGACAAAGAGAAAGTTAAGAAAGGACCATGGTCTCCGGATGAAGATGCAACACTCAAGAGTTATCTTGCAACTCATGGCACTGTTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGACTTAAGAGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTGAGGCCAGATATCAAACATGGAGGCTTCACTGAAGAAGAGGATGCCATCATTTTCACCCTCTATTCTCAAATGGGTAGCAGGCAAGTACTATTTCCAACTTATTTAATTAAGTTTTCCAACCCTCAAAATTCAGAAATCAATTTCCCTGCTTCACAAAATCAACATTCTCCACCTTCACCACTTCCAATTATGCTAGACAATAAAGTTGACAAAATTCATGATGCTGTAGTATCAGAAATTGGTACAAGTAACAGCAATATTATTAATCCTTTGGTGTCAATTTCTCAAGACTCTTCAAGCATTGCAATTCAAGATCAAGCTGGTGATGAATCTATGGAATCATTGATGGATTTTGGCTTTGGATTTCCTCATGATGATCATGTCAATGATCTTAACTGCTTTCCTGAGTGGGTTGATTTTAGTTATGCTGACATTAAGCCAAATTGA
Protein sequence

>Msa0098230

MGRAPCCDKEKVKKGPWSPDEDATLKSYLATHGTVGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDAIIFTLYSQMGSRQVLFPTYLIKFSNPQNSEINFPASQNQHSPPSPLPIMLDNKVDKIHDAVVSEIGTSNSNIINPLVSISQDSSSIAIQDQAGDESMESLMDFGFGFPHDDHVNDLNCFPEWVDFSYADIKPN*