AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019420 MtrunA17_Chr1g0170011 98.695 843 11 0 1 843 1 843 0.0 1743
Msa0019420 MtrunA17_Chr2g0311931 97.153 843 24 0 1 843 1 843 0.0 1719
Msa0019420 MtrunA17_Chr2g0311941 86.002 843 118 0 1 843 1 843 0.0 1523
Msa0019420 MtrunA17_Chr4g0065151 39.141 838 473 10 20 834 140 963 0.0 623
Msa0019420 MtrunA17_Chr4g0066951 30.020 1016 489 26 16 829 11 1006 3.84e-136 431
Msa0019420 MtrunA17_Chr2g0311731 98.851 87 1 0 1 87 1 87 2.84e-52 178
Msa0019420 MtrunA17_Chr2g0311731 73.333 45 12 0 799 843 79 123 3.74e-14 69.7
Msa0019420 MtrunA17_Chr7g0216911 40.972 144 83 2 19 162 67 208 8.92e-24 107
Msa0019420 MtrunA17_Chr3g0130991 41.667 144 71 2 18 161 82 212 1.21e-22 103
Msa0019420 MtrunA17_Chr1g0173551 37.580 157 81 2 6 162 70 209 3.63e-21 99.0
Msa0019420 MtrunA17_Chr4g0056591 25.561 446 241 15 393 823 408 777 7.87e-21 98.2
Msa0019420 MtrunA17_Chr4g0056591 38.125 160 80 3 5 162 79 221 5.52e-17 85.9
Msa0019420 MtrunA17_Chr4g0040791 40.816 147 65 4 17 162 55 180 1.35e-20 97.1
Msa0019420 MtrunA17_Chr7g0231931 39.333 150 68 4 19 162 62 194 2.98e-17 86.7
Msa0019420 MtrunA17_Chr3g0134011 94.737 38 2 0 481 518 1 38 8.35e-16 72.4
Msa0019420 MtrunA17_Chr2g0286711 35.099 151 73 4 19 162 55 187 8.11e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019420 AT1G56070.3 93.832 843 52 0 1 843 1 843 0.0 1665
Msa0019420 AT1G56070.2 93.832 843 52 0 1 843 1 843 0.0 1665
Msa0019420 AT1G56070.1 93.832 843 52 0 1 843 1 843 0.0 1665
Msa0019420 AT3G12915.2 83.511 843 84 4 1 843 1 788 0.0 1443
Msa0019420 AT1G06220.1 37.618 848 492 10 19 843 138 971 0.0 606
Msa0019420 AT1G06220.3 37.618 848 492 10 19 843 138 971 0.0 606
Msa0019420 AT1G06220.2 37.618 848 492 10 19 843 138 971 0.0 606
Msa0019420 AT5G25230.2 37.190 847 497 8 19 843 124 957 0.0 598
Msa0019420 AT5G25230.1 37.190 847 497 8 19 843 124 957 0.0 598
Msa0019420 AT3G22980.1 30.396 1010 481 27 19 829 9 995 1.93e-139 439
Msa0019420 AT3G22980.3 30.396 1010 481 27 19 829 9 995 1.93e-139 439
Msa0019420 AT3G22980.2 30.396 1010 481 27 19 829 9 995 1.93e-139 439
Msa0019420 AT5G13650.2 39.869 153 76 1 10 162 74 210 4.89e-24 108
Msa0019420 AT5G13650.1 39.869 153 76 1 10 162 73 209 5.01e-24 108
Msa0019420 AT5G39900.1 42.361 144 75 2 19 162 66 201 6.16e-24 108
Msa0019420 AT1G62750.1 26.068 468 270 16 332 793 357 754 4.05e-21 99.8
Msa0019420 AT1G62750.1 38.095 147 73 2 18 162 95 225 8.13e-16 82.4
Msa0019420 AT5G08650.2 40.278 144 73 2 18 161 85 215 6.63e-21 98.6
Msa0019420 AT5G08650.1 40.972 144 72 2 18 161 85 215 8.00e-21 98.6
Msa0019420 AT2G31060.2 40.816 147 65 4 17 162 57 182 8.59e-21 98.2
Msa0019420 AT2G31060.3 39.735 151 65 5 17 162 57 186 5.84e-19 92.4
Msa0019420 AT1G45332.2 23.701 481 263 18 332 793 148 543 6.45e-18 88.6
Msa0019420 AT1G45332.1 23.701 481 263 18 332 793 328 723 6.94e-18 89.4
Msa0019420 AT1G45332.1 37.333 150 71 4 19 162 65 197 3.06e-16 84.0
Msa0019420 AT2G45030.1 23.701 481 263 18 332 793 328 723 7.56e-18 89.0
Msa0019420 AT2G45030.1 37.333 150 71 4 19 162 65 197 3.34e-16 83.6

Find 280 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTCCCTCTCTCTTTC+AGG 0.129457 1_1:+33697980 Msa0019420:five_prime_UTR
AGGTTTGAAGGTCAGAATTA+TGG 0.233507 1_1:+33700622 Msa0019420:CDS
CCCAGTGTGTCTTTGATCAT+TGG 0.233983 1_1:+33701791 Msa0019420:CDS
AAAATGTATGCCTCAAAATT+TGG 0.234564 1_1:+33700086 Msa0019420:CDS
AGGATCTTGCCAAGAAAATT+TGG 0.236195 1_1:+33701290 Msa0019420:CDS
GCCAAGAAAATTTGGTGTTT+TGG 0.239612 1_1:+33701298 Msa0019420:CDS
CACTGTTGCTTTGGTTGGTT+TGG 0.249758 1_1:+33700757 Msa0019420:CDS
TTCTCTCCAGGGACGAAATT+TGG 0.251618 1_1:-33700647 None:intergenic
CTGACCCTGTTGTGTCATTC+AGG 0.257068 1_1:+33701080 Msa0019420:CDS
CTCCCTGTCATTGAGTCCTT+TGG 0.264856 1_1:+33701724 Msa0019420:CDS
GTTTGTACTATTGAGGAGTC+TGG 0.274916 1_1:+33700962 Msa0019420:CDS
GTGTCCAGAGAACTGTTATT+TGG 0.279555 1_1:+33700690 Msa0019420:CDS
TTCTGCTGGTTTGCATGGTT+GGG 0.288108 1_1:+33700040 Msa0019420:CDS
CACAGCCAAACCCAGGCTTC+TGG 0.302051 1_1:+33701564 Msa0019420:CDS
TTTCTGCTGGTTTGCATGGT+TGG 0.318008 1_1:+33700039 Msa0019420:CDS
AGAACACAGTTGTTTCTTGA+TGG 0.326707 1_1:+33702116 Msa0019420:three_prime_UTR
CAAGATCTTAGAACGATTCT+TGG 0.331449 1_1:-33701245 None:intergenic
GGACATCACCTGCAACTTCC+TGG 0.336795 1_1:-33699548 None:intergenic
TGAGAATGCTAATGTGATTA+TGG 0.341247 1_1:+33699953 Msa0019420:CDS
CAAACCTGTGGAAACCTTAC+CGG 0.346294 1_1:-33700606 None:intergenic
AAAGCAACTGTTCCTTTCTC+TGG 0.351057 1_1:-33700017 None:intergenic
CAGTTGAGAGCTGCAACATC+TGG 0.352619 1_1:+33701757 Msa0019420:CDS
GTCCTTCTCATCAGACTTCA+TGG 0.358364 1_1:-33700318 None:intergenic
TGATGAGTTACGTCGTATTA+TGG 0.359602 1_1:+33698802 Msa0019420:CDS
CAGGTGCTTCCTTGAGCTCC+AGG 0.361865 1_1:+33699890 Msa0019420:CDS
TGAACAGCAACACGCACAAC+AGG 0.361874 1_1:-33700866 None:intergenic
TTCTCGTGTGCATGTTTGGC+AGG 0.367777 1_1:+33702218 Msa0019420:three_prime_UTR
GGTTTGAAGGTCAGAATTAT+GGG 0.372517 1_1:+33700623 Msa0019420:CDS
TCTAGTAGGGCAGTACTTGC+TGG 0.374826 1_1:-33700386 None:intergenic
GATCTGTTTGAAAGACTTGC+AGG 0.375737 1_1:+33701024 Msa0019420:CDS
TTCCTTGAGCTCCAGGTTGA+TGG 0.376003 1_1:+33699897 Msa0019420:CDS
CACCATGACCTCAGATCCTT+TGG 0.379275 1_1:+33701816 Msa0019420:CDS
CCAGTGTGTCTTTGATCATT+GGG 0.381895 1_1:+33701792 Msa0019420:CDS
CGAAGCTGAACCAGTATTCT+TGG 0.382723 1_1:-33700183 None:intergenic
GTCCTTCAGGATCACAGTTT+CGG 0.383346 1_1:-33700508 None:intergenic
ATCAAGGATTCCGTTGTTGC+TGG 0.387593 1_1:+33701385 Msa0019420:CDS
TCATCAATGGCTTACCCATC+AGG 0.390366 1_1:-33700340 None:intergenic
CCAAGATGATGGAGAGGCTC+TGG 0.394619 1_1:+33700120 Msa0019420:CDS
GATCTTCCCAAGCTTGTTGA+AGG 0.394760 1_1:+33700905 Msa0019420:CDS
ATGATTCCAGCATCTGATAA+AGG 0.394970 1_1:+33700554 Msa0019420:CDS
GCTTCTGGAGCCTGTTTACA+TGG 0.395432 1_1:+33701579 Msa0019420:CDS
AATTCTCAACACGGTACCTC+TGG 0.395681 1_1:-33700445 None:intergenic
TCCACTTCTTGGTGATGTTA+TGG 0.395915 1_1:+33699989 Msa0019420:CDS
TAAAGCATCAGAGGTCCTTC+AGG 0.397098 1_1:-33700521 None:intergenic
TGGATTTCCACCATGTAAAC+AGG 0.399272 1_1:-33701589 None:intergenic
ATTATTGCCCAGGAAGTTGC+AGG 0.399303 1_1:+33699540 Msa0019420:CDS
AAGATCTTGTCCGAACAGTA+TGG 0.399948 1_1:+33701259 Msa0019420:CDS
GAAAGATCATCATTTCTAGT+AGG 0.402914 1_1:-33700400 None:intergenic
AAGATCTTAGAACGATTCTT+GGG 0.404757 1_1:-33701244 None:intergenic
TGGCCGTGTGTTTGCCGGTA+AGG 0.405219 1_1:+33700592 Msa0019420:CDS
ATGTTGGGCCCGGTGGTCTC+AGG 0.405338 1_1:-33701322 None:intergenic
ACATATGAAGATCCACTTCT+TGG 0.405824 1_1:+33699978 Msa0019420:CDS
GATATTCTCGTGTGCATGTT+TGG 0.407888 1_1:+33702214 Msa0019420:three_prime_UTR
GTACAGCCGGTTGTGCTTGT+TGG 0.411197 1_1:-33701149 None:intergenic
ACCTCAGATCCTTTGGAAGT+TGG 0.414757 1_1:+33701823 Msa0019420:CDS
TTGTGGTAACACTGTTGCTT+TGG 0.416139 1_1:+33700748 Msa0019420:CDS
TGCATAACACGTTTCATCAA+TGG 0.416590 1_1:-33700353 None:intergenic
GCAATTTATATTTATGAACT+TGG 0.417690 1_1:+33701949 Msa0019420:three_prime_UTR
CAAGAGCTTGCTCAGGAGCT+TGG 0.418120 1_1:-33701609 None:intergenic
TGTTGAAGGTCTCAAACGTT+TGG 0.418443 1_1:+33700919 Msa0019420:CDS
TCAGTATTTGAATGAAATCA+AGG 0.419099 1_1:+33701369 Msa0019420:CDS
GTCGCAGCACAGTTTCAGTT+TGG 0.422669 1_1:-33699818 None:intergenic
AAATGGACCACCAAGAATAC+TGG 0.423352 1_1:+33700173 Msa0019420:CDS
ATAATCTATCAAATATCAAT+AGG 0.424751 1_1:-33697811 None:intergenic
AGGCTCCAGAAGCCTGGGTT+TGG 0.428478 1_1:-33701569 None:intergenic
CATATAAGAGATAATAACTT+TGG 0.428855 1_1:-33702189 None:intergenic
AACCTTCCTTTATCAGATGC+TGG 0.429298 1_1:-33700560 None:intergenic
TATGGTTGTTTGTACTATTG+AGG 0.430770 1_1:+33700955 Msa0019420:CDS
CACATATCAACCACCATGTT+GGG 0.432084 1_1:-33701337 None:intergenic
ACAAGCTGCACAGCTTGTTA+TGG 0.432329 1_1:+33701849 Msa0019420:CDS
CCATCCAAATAACAGTTCTC+TGG 0.434711 1_1:-33700694 None:intergenic
GATGTTGTAAAGTGGGGTAC+CGG 0.435287 1_1:-33701692 None:intergenic
CCGTGTTGAGAATTTGTATG+AGG 0.437541 1_1:+33700454 Msa0019420:CDS
ACTGTGCTGCGACAAGCTCT+TGG 0.438603 1_1:+33699828 Msa0019420:CDS
AAGCTCTTGGAGAAAGGATT+AGG 0.440249 1_1:+33699841 Msa0019420:CDS
TACAGATCTTTCTTCTCTCC+AGG 0.440377 1_1:-33700659 None:intergenic
GTCTCCCTGAATGACACAAC+AGG 0.444642 1_1:-33701085 None:intergenic
TGGCCTATGCTTACAAAGCT+AGG 0.445793 1_1:+33700290 Msa0019420:CDS
CGATTCTTGGGGTCATCCCT+TGG 0.448562 1_1:-33701232 None:intergenic
GTAAACAGGCTCCAGAAGCC+TGG 0.449558 1_1:-33701575 None:intergenic
ATTAATCTCATTGATTCCCC+TGG 0.450134 1_1:+33699705 Msa0019420:CDS
AGACTTGCAGGATGATTTCA+TGG 0.452615 1_1:+33701036 Msa0019420:CDS
TGTCTCTTGTTTAGATAGAC+AGG 0.457017 1_1:+33702243 Msa0019420:three_prime_UTR
GAAAGAGAGAGAGGCGGCTA+AGG 0.457571 1_1:-33697961 None:intergenic
CCAGAGCCTCTCCATCATCT+TGG 0.458486 1_1:-33700120 None:intergenic
TTTGAGACCTTCAACAAGCT+TGG 0.459038 1_1:-33700912 None:intergenic
GCCATCGATGAGGGCACAAT+AGG 0.460189 1_1:+33701208 Msa0019420:CDS
TAAGGTTTCCACAGGTTTGA+AGG 0.460784 1_1:+33700610 Msa0019420:CDS
TGAATCTCTCAAGAGGTTCA+AGG 0.462319 1_1:+33699656 Msa0019420:CDS
AATCACCCAACAAGCACAAC+CGG 0.462761 1_1:+33701143 Msa0019420:CDS
TTGAGACCTTCAACAAGCTT+GGG 0.463364 1_1:-33700911 None:intergenic
TACAGCCGGTTGTGCTTGTT+GGG 0.463966 1_1:-33701148 None:intergenic
GATGAGAAGTCGACGTGCCC+AGG 0.465265 1_1:-33699723 None:intergenic
GTGTTGATGATCTGCTTGAT+AGG 0.466476 1_1:-33700239 None:intergenic
TCTGGGGAACACATTGTTGC+TGG 0.466745 1_1:+33700980 Msa0019420:CDS
TTTGTACTATTGAGGAGTCT+GGG 0.468088 1_1:+33700963 Msa0019420:CDS
CAATCACCCTTGAAAAGGTC+TGG 0.471232 1_1:-33699932 None:intergenic
ATCTTATTAACTGTAAGAAC+AGG 0.471492 1_1:-33699864 None:intergenic
CAAGCTCCTGAGCAAGCTCT+TGG 0.480687 1_1:+33701610 Msa0019420:CDS
CCAGAGAACTGTTATTTGGA+TGG 0.484696 1_1:+33700694 Msa0019420:CDS
CTCCATCAACCTGGAGCTCA+AGG 0.484716 1_1:-33699899 None:intergenic
CCTTGAGTCCCTTCCTCTTG+CGG 0.486812 1_1:-33701876 None:intergenic
TCTTTCTTATAACGCGAGAA+AGG 0.488530 1_1:+33697928 Msa0019420:five_prime_UTR
GGTAACACTGTTGCTTTGGT+TGG 0.489497 1_1:+33700752 Msa0019420:CDS
TCCTATTGTGCCCTCATCGA+TGG 0.490309 1_1:-33701209 None:intergenic
AGAGGGAGAGAAAGAGAGAG+AGG 0.492196 1_1:-33697970 None:intergenic
CAAGCACAACCGGCTGTACA+TGG 0.494305 1_1:+33701153 Msa0019420:CDS
GACATCACCTGCAACTTCCT+GGG 0.495418 1_1:-33699547 None:intergenic
TGTTCTTACAGTTAATAAGA+TGG 0.496370 1_1:+33699866 Msa0019420:CDS
TTTGGCTAAGTCAGATCCTA+TGG 0.497431 1_1:+33700937 Msa0019420:CDS
GGCCTATGCTTACAAAGCTA+GGG 0.499215 1_1:+33700291 Msa0019420:CDS
AGAGAGAGGCGGCTAAGGTA+TGG 0.500445 1_1:-33697956 None:intergenic
CAAGATGATGGAGAGGCTCT+GGG 0.500748 1_1:+33700121 Msa0019420:CDS
TATTTGGATGGGAAAGAGAC+AGG 0.503305 1_1:+33700706 Msa0019420:CDS
GACTCTCTAGTCGCTGCTGC+GGG 0.503640 1_1:+33699516 Msa0019420:CDS
AATCCAAAGGACTCAATGAC+AGG 0.504729 1_1:-33701727 None:intergenic
CATGGTGGTTGATATGTGTA+AGG 0.508997 1_1:+33701342 Msa0019420:CDS
CAGAGAACTGTTATTTGGAT+GGG 0.509130 1_1:+33700695 Msa0019420:CDS
ATCAACCACCATGTTGGGCC+CGG 0.509336 1_1:-33701332 None:intergenic
GGCAGTACTTGCTGGCAACC+AGG 0.509546 1_1:-33700378 None:intergenic
ATGGGACCAAATTTCGTCCC+TGG 0.509788 1_1:+33700641 Msa0019420:CDS
ATTCTCAATCACCCTTGAAA+AGG 0.511906 1_1:-33699937 None:intergenic
GAGAGCTGCAACATCTGGGC+AGG 0.512622 1_1:+33701762 Msa0019420:CDS
CGTTGACGAGTCCAAGATGA+TGG 0.513608 1_1:+33700109 Msa0019420:CDS
TGTGGATAGCATCAGTGTGC+AGG 0.514904 1_1:-33701486 None:intergenic
CAGCACGGGTGTCAGTCATT+CGG 0.518307 1_1:-33699569 None:intergenic
GGTTCAGCTTCGTGCAAGCG+TGG 0.519811 1_1:+33700194 Msa0019420:CDS
CTTGTCCGAACAGTATGGTT+GGG 0.522890 1_1:+33701264 Msa0019420:CDS
CGTTGTTGCTGGATTCCAGT+GGG 0.523212 1_1:+33701396 Msa0019420:CDS
TGCGACAAGCTCTTGGAGAA+AGG 0.523403 1_1:+33699835 Msa0019420:CDS
TGACCCTGTTGTGTCATTCA+GGG 0.524905 1_1:+33701081 Msa0019420:CDS
CAAGTGCTCCATCAGTAATA+CGG 0.527408 1_1:-33699764 None:intergenic
AAAGATCATCATTTCTAGTA+GGG 0.528380 1_1:-33700399 None:intergenic
GTCTTGCTTCCATGTACAGC+CGG 0.529578 1_1:-33701162 None:intergenic
TTACAGTTAATAAGATGGAC+AGG 0.531864 1_1:+33699871 Msa0019420:CDS
AAAACTTCATAGCTCGGATA+GGG 0.533180 1_1:-33700835 None:intergenic
TTTGCCGGTAAGGTTTCCAC+AGG 0.533577 1_1:+33700602 Msa0019420:CDS
GCGTGTTGCTGTTCAGTGCA+AGG 0.535855 1_1:+33700874 Msa0019420:CDS
GAATCTCTCAAGAGGTTCAA+GGG 0.536243 1_1:+33699657 Msa0019420:CDS
CTTGTCCCAACCATACTGTT+CGG 0.536466 1_1:-33701269 None:intergenic
ATGCTTTGATGTTGTAAAGT+GGG 0.537284 1_1:-33701699 None:intergenic
CGGTACCTCTGGGCAGTATG+TGG 0.538154 1_1:-33700434 None:intergenic
TTCCAGTGGGCATCAAAAGA+AGG 0.538881 1_1:+33701409 Msa0019420:CDS
ACACAACAAAACTCGAGATA+AGG 0.539207 1_1:-33701990 None:intergenic
CACCATGAAGTCTGATGAGA+AGG 0.539451 1_1:+33700316 Msa0019420:CDS
GTTCAGCTTCGTGCAAGCGT+GGG 0.540952 1_1:+33700195 Msa0019420:CDS
TATGCTTTGATGTTGTAAAG+TGG 0.540958 1_1:-33701700 None:intergenic
TTCATAGTAGAGTGAGATAC+CGG 0.541444 1_1:-33699625 None:intergenic
GAACAGCAACACGCACAACA+GGG 0.544909 1_1:-33700865 None:intergenic
GATGCTATCCACAGAGGAGG+TGG 0.545132 1_1:+33701496 Msa0019420:CDS
ACACATATCAACCACCATGT+TGG 0.545736 1_1:-33701338 None:intergenic
TGTAGCATTTGCATTGATGT+AGG 0.548065 1_1:+33702053 Msa0019420:three_prime_UTR
ATGTTGTAAAGTGGGGTACC+GGG 0.548869 1_1:-33701691 None:intergenic
GCTCCTGAGCAAGCTCTTGG+TGG 0.549556 1_1:+33701613 Msa0019420:CDS
TGTTGCAGCTCTCAACTGAC+TGG 0.549825 1_1:-33701752 None:intergenic
AACACGCACAACAGGGGAGA+CGG 0.549875 1_1:-33700858 None:intergenic
CATGGAAGCAAGACCATTGG+AGG 0.550888 1_1:+33701171 Msa0019420:CDS
TCTGCAAGTCCATCCTCCAA+TGG 0.551260 1_1:-33701184 None:intergenic
CCCAATGATCAAAGACACAC+TGG 0.551429 1_1:-33701792 None:intergenic
CGACTCTCTAGTCGCTGCTG+CGG 0.551465 1_1:+33699515 Msa0019420:CDS
GAAAACTTCATAGCTCGGAT+AGG 0.554600 1_1:-33700836 None:intergenic
ATTTGCATATTGATCGTCAA+GGG 0.554630 1_1:-33700480 None:intergenic
GTTATGGTGTATCCAGAGAA+AGG 0.556062 1_1:+33700005 Msa0019420:CDS
ACTTCATAGCTCGGATAGGG+TGG 0.557461 1_1:-33700832 None:intergenic
ATGAGAAGTCGACGTGCCCA+GGG 0.558070 1_1:-33699722 None:intergenic
TTAATCTCATTGATTCCCCT+GGG 0.559398 1_1:+33699706 Msa0019420:CDS
TCTCGTGTGCATGTTTGGCA+GGG 0.559807 1_1:+33702219 Msa0019420:three_prime_UTR
TTCCAAAGGATCTGAGGTCA+TGG 0.560711 1_1:-33701818 None:intergenic
CTCTGGGCAGTATGTGGTGA+GGG 0.561287 1_1:-33700428 None:intergenic
CCGCAAGAGGAAGGGACTCA+AGG 0.562209 1_1:+33701876 Msa0019420:CDS
TTTGAAGAAATGCAGAGGCC+CGG 0.562287 1_1:+33701673 Msa0019420:CDS
TATGGACATCCGCAAGAGGA+AGG 0.562365 1_1:+33701867 Msa0019420:CDS
CCGTTGTTGCTGGATTCCAG+TGG 0.562420 1_1:+33701395 Msa0019420:CDS
CACGCTCAGCTTCATCAGCA+CGG 0.562494 1_1:-33699584 None:intergenic
ACCATAACATCACCAAGAAG+TGG 0.563046 1_1:-33699990 None:intergenic
TAAACAGGCTCCAGAAGCCT+GGG 0.563138 1_1:-33701574 None:intergenic
CACAGCTCACAGCCAAACCC+AGG 0.564223 1_1:+33701557 Msa0019420:CDS
GTCTGATGAGAAGGACCTGA+TGG 0.565161 1_1:+33700325 Msa0019420:CDS
CTTGCAGAGGCCATCGATGA+GGG 0.568842 1_1:+33701199 Msa0019420:CDS
TCTTGTCCGAACAGTATGGT+TGG 0.569952 1_1:+33701263 Msa0019420:CDS
AGACGGAAAACTTCATAGCT+CGG 0.571073 1_1:-33700841 None:intergenic
CACTTGTATGAATGATCAGA+AGG 0.573672 1_1:+33700259 Msa0019420:CDS
TCAATAGTACAAACAACCAT+AGG 0.573953 1_1:-33700953 None:intergenic
CTTGTCTTCAAACTCAGAGA+GGG 0.575853 1_1:-33701911 None:intergenic
AGTGTGTATATGTATGAGTA+AGG 0.579025 1_1:-33697890 None:intergenic
ACGCCTCCTCTCCATCAACC+TGG 0.579539 1_1:-33699908 None:intergenic
AGTTGAGAGCTGCAACATCT+GGG 0.580420 1_1:+33701758 Msa0019420:CDS
GGTATTACAATCAAGTCTAC+CGG 0.580486 1_1:+33699606 Msa0019420:CDS
ATACCACCAAGAGCTTGCTC+AGG 0.582185 1_1:-33701616 None:intergenic
TGCTGCGGGAATTATTGCCC+AGG 0.583228 1_1:+33699530 Msa0019420:CDS
TGCTACATTGACAAATGAGA+AGG 0.584546 1_1:+33700799 Msa0019420:CDS
GCTGCACTCCGTATTACTGA+TGG 0.586477 1_1:+33699756 Msa0019420:CDS
GAACACATTGTTGCTGGTGC+AGG 0.586596 1_1:+33700986 Msa0019420:CDS
ACGCTCAGCTTCATCAGCAC+GGG 0.587287 1_1:-33699583 None:intergenic
TGACTGATGAATCTCTCAAG+AGG 0.587306 1_1:+33699649 Msa0019420:CDS
GTACATGGAAGCAAGACCAT+TGG 0.587944 1_1:+33701168 Msa0019420:CDS
GTGGTGGTTGACTGTGTGGA+AGG 0.588965 1_1:+33699786 Msa0019420:CDS
ATTCTCAACACGGTACCTCT+GGG 0.589098 1_1:-33700444 None:intergenic
ATGGACATCCGCAAGAGGAA+GGG 0.589685 1_1:+33701868 Msa0019420:CDS
CTCGTGTGCATGTTTGGCAG+GGG 0.591136 1_1:+33702220 Msa0019420:three_prime_UTR
AAACCTTACCGGCAAACACA+CGG 0.592803 1_1:-33700595 None:intergenic
TACTGATGGAGCACTTGTGG+TGG 0.593158 1_1:+33699770 Msa0019420:CDS
TTCCAGCATCTGATAAAGGA+AGG 0.593214 1_1:+33700558 Msa0019420:CDS
CGAACAGTATGGTTGGGACA+AGG 0.595072 1_1:+33701270 Msa0019420:CDS
AAATGATACCTGAAAGAGAG+AGG 0.595152 1_1:-33697988 None:intergenic
CATTTGCATATTGATCGTCA+AGG 0.595538 1_1:-33700481 None:intergenic
CCAATGATCAAAGACACACT+GGG 0.598032 1_1:-33701791 None:intergenic
TGAGCTCCAGGTTGATGGAG+AGG 0.602836 1_1:+33699902 Msa0019420:CDS
GAAGCAAGACCATTGGAGGA+TGG 0.605318 1_1:+33701175 Msa0019420:CDS
AATTCTGACCTTCAAACCTG+TGG 0.606212 1_1:-33700618 None:intergenic
GCTTGTGATCCAACTTCCAA+AGG 0.606835 1_1:-33701832 None:intergenic
CGTGTTGAGAATTTGTATGA+GGG 0.607857 1_1:+33700455 Msa0019420:CDS
TAGAAGACTCTCCTAGCAGT+AGG 0.608055 1_1:-33701529 None:intergenic
TCTGATGAGAAGGACCTGAT+GGG 0.610458 1_1:+33700326 Msa0019420:CDS
TATTACTGATGGAGCACTTG+TGG 0.611701 1_1:+33699767 Msa0019420:CDS
TTGTACTATTGAGGAGTCTG+GGG 0.612431 1_1:+33700964 Msa0019420:CDS
TGCTTTGATGTTGTAAAGTG+GGG 0.620305 1_1:-33701698 None:intergenic
ACAGATCTTTCTTCTCTCCA+GGG 0.621647 1_1:-33700658 None:intergenic
AGCTGAACCAGTATTCTTGG+TGG 0.623967 1_1:-33700180 None:intergenic
CTTCATAGCTCGGATAGGGT+GGG 0.626126 1_1:-33700831 None:intergenic
AACCACCATGTTGGGCCCGG+TGG 0.628249 1_1:-33701329 None:intergenic
TTTGACACATAAAGCATCAG+AGG 0.628659 1_1:-33700530 None:intergenic
TGAGACCACCGGGCCCAACA+TGG 0.629138 1_1:+33701324 Msa0019420:CDS
AATGATACCTGAAAGAGAGA+GGG 0.629894 1_1:-33697987 None:intergenic
AAAGAGACAGGAGACTGTTG+AGG 0.631254 1_1:+33700718 Msa0019420:CDS
GGGTTTGGCTGTGAGCTGTG+AGG 0.632899 1_1:-33701554 None:intergenic
ACGAGTCCAAGATGATGGAG+AGG 0.633430 1_1:+33700114 Msa0019420:CDS
TCCAACTTCCAAAGGATCTG+AGG 0.633775 1_1:-33701824 None:intergenic
CCACTGGAATCCAGCAACAA+CGG 0.634741 1_1:-33701395 None:intergenic
ACTTGTGGTGGTTGACTGTG+TGG 0.635770 1_1:+33699782 Msa0019420:CDS
TGAAACGTGTTATGCAAACC+TGG 0.637256 1_1:+33700360 Msa0019420:CDS
CGCAGCAGCGACTAGAGAGT+CGG 0.639168 1_1:-33699514 None:intergenic
ATCCGAAACTGTGATCCTGA+AGG 0.640545 1_1:+33700506 Msa0019420:CDS
CAACTGACTGGAAAATCCAA+AGG 0.641465 1_1:-33701740 None:intergenic
GGGAGAGAAAGAGAGAGAGG+CGG 0.642705 1_1:-33697967 None:intergenic
GTCAGATCATTCCTACTGCT+AGG 0.642716 1_1:+33701518 Msa0019420:CDS
CCTCTGGGCAGTATGTGGTG+AGG 0.643172 1_1:-33700429 None:intergenic
TGATCTGACCACCTCCTCTG+TGG 0.643725 1_1:-33701504 None:intergenic
TTGTCGGAAGAAAACATGAG+AGG 0.644061 1_1:+33701436 Msa0019420:CDS
GACTTGCAGGATGATTTCAT+GGG 0.647000 1_1:+33701037 Msa0019420:CDS
GCCTATGCTTACAAAGCTAG+GGG 0.647095 1_1:+33700292 Msa0019420:CDS
AATCTCTCAAGAGGTTCAAG+GGG 0.649198 1_1:+33699658 Msa0019420:CDS
ACTTGCAGAGGCCATCGATG+AGG 0.651194 1_1:+33701198 Msa0019420:CDS
ATGAGGGCACAATAGGACCA+AGG 0.652106 1_1:+33701215 Msa0019420:CDS
TTGCAGGATGATTTCATGGG+TGG 0.652681 1_1:+33701040 Msa0019420:CDS
TTGTTATGGACATCCGCAAG+AGG 0.656029 1_1:+33701863 Msa0019420:CDS
ATTGGAGGATGGACTTGCAG+AGG 0.656657 1_1:+33701186 Msa0019420:CDS
GCACGTCGACTTCTCATCTG+AGG 0.657062 1_1:+33699728 Msa0019420:CDS
GCTTGTCTTCAAACTCAGAG+AGG 0.657154 1_1:-33701912 None:intergenic
TGAGGGCACAATAGGACCAA+GGG 0.657248 1_1:+33701216 Msa0019420:CDS
TTTGCATATTGATCGTCAAG+GGG 0.659239 1_1:-33700479 None:intergenic
TCTGGAGCCTGTTTACATGG+TGG 0.659247 1_1:+33701582 Msa0019420:CDS
ACCCCTAGCTTTGTAAGCAT+AGG 0.660246 1_1:-33700293 None:intergenic
GTGATTTACTCATCACTGTG+CGG 0.663418 1_1:-33701126 None:intergenic
GCTCCAGGTTGATGGAGAGG+AGG 0.665687 1_1:+33699905 Msa0019420:CDS
ATCAGAATACCACAACAGCA+AGG 0.668148 1_1:-33702279 None:intergenic
TTGTCTTCAAACTCAGAGAG+GGG 0.668578 1_1:-33701910 None:intergenic
ATGATCAGAAGGATAAGTTG+TGG 0.670228 1_1:+33700270 Msa0019420:CDS
ATCCAAAGGACTCAATGACA+GGG 0.671225 1_1:-33701726 None:intergenic
AGATCTTAGAACGATTCTTG+GGG 0.672368 1_1:-33701243 None:intergenic
CCTCATACAAATTCTCAACA+CGG 0.672730 1_1:-33700454 None:intergenic
GTCATTGCACATGTTGACCA+CGG 0.676715 1_1:+33698854 Msa0019420:CDS
GACCACCGGGCCCAACATGG+TGG 0.678120 1_1:+33701327 Msa0019420:CDS
AACAGCAACACGCACAACAG+GGG 0.681174 1_1:-33700864 None:intergenic
TTGCATATTGATCGTCAAGG+GGG 0.688894 1_1:-33700478 None:intergenic
ACTGATGCTATCCACAGAGG+AGG 0.690896 1_1:+33701493 Msa0019420:CDS
AAGATGATGGAGAGGCTCTG+GGG 0.692051 1_1:+33700122 Msa0019420:CDS
ATGGTGGTTGATATGTGTAA+GGG 0.703374 1_1:+33701343 Msa0019420:CDS
TCTCCCTGAATGACACAACA+GGG 0.710578 1_1:-33701084 None:intergenic
CGTGCTGATGAAGCTGAGCG+TGG 0.710870 1_1:+33699585 Msa0019420:CDS
AGTGTTCTTAATCAGAAACG+TGG 0.716523 1_1:+33701643 Msa0019420:CDS
AAAGCAACAGTGTTACCACA+AGG 0.719194 1_1:-33700746 None:intergenic
CAAAGGACTCAATGACAGGG+AGG 0.725112 1_1:-33701723 None:intergenic
CAATGATCAAAGACACACTG+GGG 0.733022 1_1:-33701790 None:intergenic
AATGATCAAAGACACACTGG+GGG 0.734815 1_1:-33701789 None:intergenic
TGAGAAGTCGACGTGCCCAG+GGG 0.741729 1_1:-33699721 None:intergenic
ATCTCTCAAGAGGTTCAAGG+GGG 0.752307 1_1:+33699659 Msa0019420:CDS
CACACTGATGCTATCCACAG+AGG 0.760707 1_1:+33701490 Msa0019420:CDS
CCTCACCACATACTGCCCAG+AGG 0.760799 1_1:+33700429 Msa0019420:CDS
ACTGTTGAGGATGTGCCTTG+TGG 0.764160 1_1:+33700731 Msa0019420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATAGATTATTTTTTT+TGG + chr1_1:33697820-33697839 Msa0019420:five_prime_UTR 10.0%
!!! ATTATAAGAAAAAATGATTT+TGG + chr1_1:33698940-33698959 Msa0019420:intron 10.0%
!!! TTATAATTGGTTTTATATAA+AGG - chr1_1:33699049-33699068 None:intergenic 10.0%
!! TAAAACCAATTATAATAAAA+TGG + chr1_1:33699054-33699073 Msa0019420:intron 10.0%
!! AAATTTCTAAATTTGATTAT+AGG + chr1_1:33699139-33699158 Msa0019420:intron 10.0%
!! ATAATCTATCAAATATCAAT+AGG - chr1_1:33697814-33697833 None:intergenic 15.0%
!!! GATAGATTATTTTTTTTGGA+CGG + chr1_1:33697824-33697843 Msa0019420:five_prime_UTR 20.0%
!! TTACTGTTAGATTAATTGTA+AGG + chr1_1:33698265-33698284 Msa0019420:intron 20.0%
!!! GCAATCCATTTTATTATAAT+TGG - chr1_1:33699062-33699081 None:intergenic 20.0%
!! TTAGTACTTAAAAAATCATG+CGG - chr1_1:33699319-33699338 None:intergenic 20.0%
!! GCAATTTATATTTATGAACT+TGG + chr1_1:33701949-33701968 Msa0019420:three_prime_UTR 20.0%
!! CATATAAGAGATAATAACTT+TGG - chr1_1:33702192-33702211 None:intergenic 20.0%
!!! TTTTTTGGACGGAATAATTT+AGG + chr1_1:33697835-33697854 Msa0019420:five_prime_UTR 25.0%
!!! TTTGTTTTTGTTGTGTTATG+TGG + chr1_1:33698351-33698370 Msa0019420:intron 25.0%
!!! CTGTACTACTTTTTTTTTGT+TGG + chr1_1:33698492-33698511 Msa0019420:intron 25.0%
! AAATCTATAATCATGTGTGT+CGG - chr1_1:33698558-33698577 None:intergenic 25.0%
!! ATTATAGATTTGGTCATCTT+TGG + chr1_1:33698567-33698586 Msa0019420:intron 25.0%
!! TTATAGATTTGGTCATCTTT+GGG + chr1_1:33698568-33698587 Msa0019420:intron 25.0%
!!! AGTACTAAAGACTTTTTTTG+CGG + chr1_1:33698650-33698669 Msa0019420:intron 25.0%
!! TTTTTCCACAAAAAATCTGT+AGG + chr1_1:33699175-33699194 Msa0019420:intron 25.0%
! GTATATGTACTATAGTTTAC+CGG + chr1_1:33699443-33699462 Msa0019420:intron 25.0%
! AAAGAAAAAATTGTTCAGAC+CGG - chr1_1:33699465-33699484 None:intergenic 25.0%
! ATCTTATTAACTGTAAGAAC+AGG - chr1_1:33699867-33699886 None:intergenic 25.0%
! TGTTCTTACAGTTAATAAGA+TGG + chr1_1:33699866-33699885 Msa0019420:CDS 25.0%
! AAAATGTATGCCTCAAAATT+TGG + chr1_1:33700086-33700105 Msa0019420:CDS 25.0%
!!! AAAGATCATCATTTCTAGTA+GGG - chr1_1:33700402-33700421 None:intergenic 25.0%
! TCAGTATTTGAATGAAATCA+AGG + chr1_1:33701369-33701388 Msa0019420:CDS 25.0%
!! GATGGAAAAATGTACTATTT+TGG + chr1_1:33702134-33702153 Msa0019420:three_prime_UTR 25.0%
AGTGTGTATATGTATGAGTA+AGG - chr1_1:33697893-33697912 None:intergenic 30.0%
TTCTCTGTTCTTATTCAGAT+CGG + chr1_1:33698054-33698073 Msa0019420:intron 30.0%
AATCTATAATCATGTGTGTC+GGG - chr1_1:33698557-33698576 None:intergenic 30.0%
GACACACATGATTATAGATT+TGG + chr1_1:33698557-33698576 Msa0019420:intron 30.0%
! ACTAAAAAGACTAGTCAAGA+TGG + chr1_1:33698673-33698692 Msa0019420:exon 30.0%
!!! TGTTTCCTACAGATTTTTTG+TGG - chr1_1:33699183-33699202 None:intergenic 30.0%
ACAAAAAATCTGTAGGAAAC+AGG + chr1_1:33699182-33699201 Msa0019420:intron 30.0%
!!! TTTTCTTTGTTTCTATACGC+AGG + chr1_1:33699477-33699496 Msa0019420:intron 30.0%
TTACAGTTAATAAGATGGAC+AGG + chr1_1:33699871-33699890 Msa0019420:CDS 30.0%
TGAGAATGCTAATGTGATTA+TGG + chr1_1:33699953-33699972 Msa0019420:CDS 30.0%
!! GAAAGATCATCATTTCTAGT+AGG - chr1_1:33700403-33700422 None:intergenic 30.0%
ATTTGCATATTGATCGTCAA+GGG - chr1_1:33700483-33700502 None:intergenic 30.0%
!!! AAAGGAAGGTTTTTTGCTTT+TGG + chr1_1:33700572-33700591 Msa0019420:CDS 30.0%
TCAATAGTACAAACAACCAT+AGG - chr1_1:33700956-33700975 None:intergenic 30.0%
TATGGTTGTTTGTACTATTG+AGG + chr1_1:33700955-33700974 Msa0019420:CDS 30.0%
AAGATCTTAGAACGATTCTT+GGG - chr1_1:33701247-33701266 None:intergenic 30.0%
! TCCAAAACACCAAATTTTCT+TGG - chr1_1:33701302-33701321 None:intergenic 30.0%
!!! ATCAAAAGAAGGTGTTTTGT+CGG + chr1_1:33701420-33701439 Msa0019420:CDS 30.0%
ATGCTTTGATGTTGTAAAGT+GGG - chr1_1:33701702-33701721 None:intergenic 30.0%
TATGCTTTGATGTTGTAAAG+TGG - chr1_1:33701703-33701722 None:intergenic 30.0%
TCTTTCTTATAACGCGAGAA+AGG + chr1_1:33697928-33697947 Msa0019420:five_prime_UTR 35.0%
AATGATACCTGAAAGAGAGA+GGG - chr1_1:33697990-33698009 None:intergenic 35.0%
AAATGATACCTGAAAGAGAG+AGG - chr1_1:33697991-33698010 None:intergenic 35.0%
ATCTATAATCATGTGTGTCG+GGG - chr1_1:33698556-33698575 None:intergenic 35.0%
! AGATTTGTGTTACTGTCAAC+AGG + chr1_1:33698766-33698785 Msa0019420:intron 35.0%
TGATGAGTTACGTCGTATTA+TGG + chr1_1:33698802-33698821 Msa0019420:CDS 35.0%
! TAGAATACACTCTGATTTGC+AGG - chr1_1:33699409-33699428 None:intergenic 35.0%
GGTATTACAATCAAGTCTAC+CGG + chr1_1:33699606-33699625 Msa0019420:CDS 35.0%
TTCATAGTAGAGTGAGATAC+CGG - chr1_1:33699628-33699647 None:intergenic 35.0%
!! ATTAATCTCATTGATTCCCC+TGG + chr1_1:33699705-33699724 Msa0019420:CDS 35.0%
!! TTAATCTCATTGATTCCCCT+GGG + chr1_1:33699706-33699725 Msa0019420:CDS 35.0%
ATTCTCAATCACCCTTGAAA+AGG - chr1_1:33699940-33699959 None:intergenic 35.0%
ACATATGAAGATCCACTTCT+TGG + chr1_1:33699978-33699997 Msa0019420:CDS 35.0%
! GGCATACATTTTTGCAAAGT+TGG - chr1_1:33700078-33700097 None:intergenic 35.0%
CACTTGTATGAATGATCAGA+AGG + chr1_1:33700259-33700278 Msa0019420:CDS 35.0%
ATGATCAGAAGGATAAGTTG+TGG + chr1_1:33700270-33700289 Msa0019420:CDS 35.0%
TGCATAACACGTTTCATCAA+TGG - chr1_1:33700356-33700375 None:intergenic 35.0%
CCTCATACAAATTCTCAACA+CGG - chr1_1:33700457-33700476 None:intergenic 35.0%
CGTGTTGAGAATTTGTATGA+GGG + chr1_1:33700455-33700474 Msa0019420:CDS 35.0%
TTTGCATATTGATCGTCAAG+GGG - chr1_1:33700482-33700501 None:intergenic 35.0%
CATTTGCATATTGATCGTCA+AGG - chr1_1:33700484-33700503 None:intergenic 35.0%
! TTTGACACATAAAGCATCAG+AGG - chr1_1:33700533-33700552 None:intergenic 35.0%
ATGATTCCAGCATCTGATAA+AGG + chr1_1:33700554-33700573 Msa0019420:CDS 35.0%
AGGTTTGAAGGTCAGAATTA+TGG + chr1_1:33700622-33700641 Msa0019420:CDS 35.0%
GGTTTGAAGGTCAGAATTAT+GGG + chr1_1:33700623-33700642 Msa0019420:CDS 35.0%
! CAGAGAACTGTTATTTGGAT+GGG + chr1_1:33700695-33700714 Msa0019420:CDS 35.0%
TGCTACATTGACAAATGAGA+AGG + chr1_1:33700799-33700818 Msa0019420:CDS 35.0%
AAAACTTCATAGCTCGGATA+GGG - chr1_1:33700838-33700857 None:intergenic 35.0%
TTTGTACTATTGAGGAGTCT+GGG + chr1_1:33700963-33700982 Msa0019420:CDS 35.0%
AGATCTTAGAACGATTCTTG+GGG - chr1_1:33701246-33701265 None:intergenic 35.0%
CAAGATCTTAGAACGATTCT+TGG - chr1_1:33701248-33701267 None:intergenic 35.0%
AGGATCTTGCCAAGAAAATT+TGG + chr1_1:33701290-33701309 Msa0019420:CDS 35.0%
!!! GCCAAGAAAATTTGGTGTTT+TGG + chr1_1:33701298-33701317 Msa0019420:CDS 35.0%
! ATGGTGGTTGATATGTGTAA+GGG + chr1_1:33701343-33701362 Msa0019420:CDS 35.0%
AGTGTTCTTAATCAGAAACG+TGG + chr1_1:33701643-33701662 Msa0019420:CDS 35.0%
!! ACGTTTTTGAAGAAATGCAG+AGG + chr1_1:33701668-33701687 Msa0019420:CDS 35.0%
TGCTTTGATGTTGTAAAGTG+GGG - chr1_1:33701701-33701720 None:intergenic 35.0%
ACACAACAAAACTCGAGATA+AGG - chr1_1:33701993-33702012 None:intergenic 35.0%
! TGTAGCATTTGCATTGATGT+AGG + chr1_1:33702053-33702072 Msa0019420:three_prime_UTR 35.0%
!! AGAACACAGTTGTTTCTTGA+TGG + chr1_1:33702116-33702135 Msa0019420:three_prime_UTR 35.0%
! TGTCTCTTGTTTAGATAGAC+AGG + chr1_1:33702243-33702262 Msa0019420:three_prime_UTR 35.0%
! GGTTAGAGAGATTGCGTTTT+TGG + chr1_1:33697856-33697875 Msa0019420:five_prime_UTR 40.0%
!!! ATTGCGTTTTTGGTTTCGCT+TGG + chr1_1:33697866-33697885 Msa0019420:five_prime_UTR 40.0%
! GACTAGTCAAGATGGTAAGT+CGG + chr1_1:33698681-33698700 Msa0019420:intron 40.0%
TGTTCGCAGCAATCAAGAAA+GGG - chr1_1:33698893-33698912 None:intergenic 40.0%
TTGTTCGCAGCAATCAAGAA+AGG - chr1_1:33698894-33698913 None:intergenic 40.0%
TGACTGATGAATCTCTCAAG+AGG + chr1_1:33699649-33699668 Msa0019420:CDS 40.0%
TGAATCTCTCAAGAGGTTCA+AGG + chr1_1:33699656-33699675 Msa0019420:CDS 40.0%
GAATCTCTCAAGAGGTTCAA+GGG + chr1_1:33699657-33699676 Msa0019420:CDS 40.0%
AATCTCTCAAGAGGTTCAAG+GGG + chr1_1:33699658-33699677 Msa0019420:CDS 40.0%
CAAGTGCTCCATCAGTAATA+CGG - chr1_1:33699767-33699786 None:intergenic 40.0%
! TATTACTGATGGAGCACTTG+TGG + chr1_1:33699767-33699786 Msa0019420:CDS 40.0%
AAGCTCTTGGAGAAAGGATT+AGG + chr1_1:33699841-33699860 Msa0019420:CDS 40.0%
!! TCCACTTCTTGGTGATGTTA+TGG + chr1_1:33699989-33700008 Msa0019420:CDS 40.0%
ACCATAACATCACCAAGAAG+TGG - chr1_1:33699993-33700012 None:intergenic 40.0%
GTTATGGTGTATCCAGAGAA+AGG + chr1_1:33700005-33700024 Msa0019420:CDS 40.0%
AAAGCAACTGTTCCTTTCTC+TGG - chr1_1:33700020-33700039 None:intergenic 40.0%
TTGATCCCGCCACAAAAAAA+TGG + chr1_1:33700156-33700175 Msa0019420:CDS 40.0%
!!! CTTGGTGGTCCATTTTTTTG+TGG - chr1_1:33700168-33700187 None:intergenic 40.0%
AAATGGACCACCAAGAATAC+TGG + chr1_1:33700173-33700192 Msa0019420:CDS 40.0%
!! GTGTTGATGATCTGCTTGAT+AGG - chr1_1:33700242-33700261 None:intergenic 40.0%
TGAAACGTGTTATGCAAACC+TGG + chr1_1:33700360-33700379 Msa0019420:CDS 40.0%
CCGTGTTGAGAATTTGTATG+AGG + chr1_1:33700454-33700473 Msa0019420:CDS 40.0%
TTGCATATTGATCGTCAAGG+GGG - chr1_1:33700481-33700500 None:intergenic 40.0%
TTCCAGCATCTGATAAAGGA+AGG + chr1_1:33700558-33700577 Msa0019420:CDS 40.0%
AACCTTCCTTTATCAGATGC+TGG - chr1_1:33700563-33700582 None:intergenic 40.0%
TAAGGTTTCCACAGGTTTGA+AGG + chr1_1:33700610-33700629 Msa0019420:CDS 40.0%
AATTCTGACCTTCAAACCTG+TGG - chr1_1:33700621-33700640 None:intergenic 40.0%
ACAGATCTTTCTTCTCTCCA+GGG - chr1_1:33700661-33700680 None:intergenic 40.0%
TACAGATCTTTCTTCTCTCC+AGG - chr1_1:33700662-33700681 None:intergenic 40.0%
GTGTCCAGAGAACTGTTATT+TGG + chr1_1:33700690-33700709 Msa0019420:CDS 40.0%
CCATCCAAATAACAGTTCTC+TGG - chr1_1:33700697-33700716 None:intergenic 40.0%
! CCAGAGAACTGTTATTTGGA+TGG + chr1_1:33700694-33700713 Msa0019420:CDS 40.0%
TATTTGGATGGGAAAGAGAC+AGG + chr1_1:33700706-33700725 Msa0019420:CDS 40.0%
AAAGCAACAGTGTTACCACA+AGG - chr1_1:33700749-33700768 None:intergenic 40.0%
! TTGTGGTAACACTGTTGCTT+TGG + chr1_1:33700748-33700767 Msa0019420:CDS 40.0%
GAAAACTTCATAGCTCGGAT+AGG - chr1_1:33700839-33700858 None:intergenic 40.0%
AGACGGAAAACTTCATAGCT+CGG - chr1_1:33700844-33700863 None:intergenic 40.0%
TTGAGACCTTCAACAAGCTT+GGG - chr1_1:33700914-33700933 None:intergenic 40.0%
! TTTGAGACCTTCAACAAGCT+TGG - chr1_1:33700915-33700934 None:intergenic 40.0%
TGTTGAAGGTCTCAAACGTT+TGG + chr1_1:33700919-33700938 Msa0019420:CDS 40.0%
TTTGGCTAAGTCAGATCCTA+TGG + chr1_1:33700937-33700956 Msa0019420:CDS 40.0%
GTTTGTACTATTGAGGAGTC+TGG + chr1_1:33700962-33700981 Msa0019420:CDS 40.0%
TTGTACTATTGAGGAGTCTG+GGG + chr1_1:33700964-33700983 Msa0019420:CDS 40.0%
GATCTGTTTGAAAGACTTGC+AGG + chr1_1:33701024-33701043 Msa0019420:CDS 40.0%
AGACTTGCAGGATGATTTCA+TGG + chr1_1:33701036-33701055 Msa0019420:CDS 40.0%
GACTTGCAGGATGATTTCAT+GGG + chr1_1:33701037-33701056 Msa0019420:CDS 40.0%
GTGATTTACTCATCACTGTG+CGG - chr1_1:33701129-33701148 None:intergenic 40.0%
AAGATCTTGTCCGAACAGTA+TGG + chr1_1:33701259-33701278 Msa0019420:CDS 40.0%
CACATATCAACCACCATGTT+GGG - chr1_1:33701340-33701359 None:intergenic 40.0%
ACACATATCAACCACCATGT+TGG - chr1_1:33701341-33701360 None:intergenic 40.0%
! CATGGTGGTTGATATGTGTA+AGG + chr1_1:33701342-33701361 Msa0019420:CDS 40.0%
TTGTCGGAAGAAAACATGAG+AGG + chr1_1:33701436-33701455 Msa0019420:CDS 40.0%
TGGATTTCCACCATGTAAAC+AGG - chr1_1:33701592-33701611 None:intergenic 40.0%
ATCCAAAGGACTCAATGACA+GGG - chr1_1:33701729-33701748 None:intergenic 40.0%
AATCCAAAGGACTCAATGAC+AGG - chr1_1:33701730-33701749 None:intergenic 40.0%
CAACTGACTGGAAAATCCAA+AGG - chr1_1:33701743-33701762 None:intergenic 40.0%
AATGATCAAAGACACACTGG+GGG - chr1_1:33701792-33701811 None:intergenic 40.0%
CAATGATCAAAGACACACTG+GGG - chr1_1:33701793-33701812 None:intergenic 40.0%
CCAATGATCAAAGACACACT+GGG - chr1_1:33701794-33701813 None:intergenic 40.0%
CCAGTGTGTCTTTGATCATT+GGG + chr1_1:33701792-33701811 Msa0019420:CDS 40.0%
TTGTCTTCAAACTCAGAGAG+GGG - chr1_1:33701913-33701932 None:intergenic 40.0%
CTTGTCTTCAAACTCAGAGA+GGG - chr1_1:33701914-33701933 None:intergenic 40.0%
GATATTCTCGTGTGCATGTT+TGG + chr1_1:33702214-33702233 Msa0019420:three_prime_UTR 40.0%
TTTCTCTCCCTCTCTCTTTC+AGG + chr1_1:33697980-33697999 Msa0019420:five_prime_UTR 45.0%
ATAATCATGTGTGTCGGGGT+CGG - chr1_1:33698552-33698571 None:intergenic 45.0%
TAGTCAAGATGGTAAGTCGG+TGG + chr1_1:33698684-33698703 Msa0019420:intron 45.0%
GTCATTGCACATGTTGACCA+CGG + chr1_1:33698854-33698873 Msa0019420:CDS 45.0%
ATTATTGCCCAGGAAGTTGC+AGG + chr1_1:33699540-33699559 Msa0019420:CDS 45.0%
ATCTCTCAAGAGGTTCAAGG+GGG + chr1_1:33699659-33699678 Msa0019420:CDS 45.0%
CAATCACCCTTGAAAAGGTC+TGG - chr1_1:33699935-33699954 None:intergenic 45.0%
!!! GGAACAGTTGCTTTTTCTGC+TGG + chr1_1:33700026-33700045 Msa0019420:CDS 45.0%
!!! GCTTTTTCTGCTGGTTTGCA+TGG + chr1_1:33700035-33700054 Msa0019420:CDS 45.0%
!! TTTCTGCTGGTTTGCATGGT+TGG + chr1_1:33700039-33700058 Msa0019420:CDS 45.0%
!! TTCTGCTGGTTTGCATGGTT+GGG + chr1_1:33700040-33700059 Msa0019420:CDS 45.0%
! CTCGTCAACGCCAAATTTTG+AGG - chr1_1:33700099-33700118 None:intergenic 45.0%
!!! GTGGTCCATTTTTTTGTGGC+GGG - chr1_1:33700164-33700183 None:intergenic 45.0%
!!! GGTGGTCCATTTTTTTGTGG+CGG - chr1_1:33700165-33700184 None:intergenic 45.0%
AGCTGAACCAGTATTCTTGG+TGG - chr1_1:33700183-33700202 None:intergenic 45.0%
CGAAGCTGAACCAGTATTCT+TGG - chr1_1:33700186-33700205 None:intergenic 45.0%
TGGCCTATGCTTACAAAGCT+AGG + chr1_1:33700290-33700309 Msa0019420:CDS 45.0%
GGCCTATGCTTACAAAGCTA+GGG + chr1_1:33700291-33700310 Msa0019420:CDS 45.0%
GCCTATGCTTACAAAGCTAG+GGG + chr1_1:33700292-33700311 Msa0019420:CDS 45.0%
!! ACCCCTAGCTTTGTAAGCAT+AGG - chr1_1:33700296-33700315 None:intergenic 45.0%
CACCATGAAGTCTGATGAGA+AGG + chr1_1:33700316-33700335 Msa0019420:CDS 45.0%
GTCCTTCTCATCAGACTTCA+TGG - chr1_1:33700321-33700340 None:intergenic 45.0%
TCTGATGAGAAGGACCTGAT+GGG + chr1_1:33700326-33700345 Msa0019420:CDS 45.0%
TCATCAATGGCTTACCCATC+AGG - chr1_1:33700343-33700362 None:intergenic 45.0%
ATTCTCAACACGGTACCTCT+GGG - chr1_1:33700447-33700466 None:intergenic 45.0%
AATTCTCAACACGGTACCTC+TGG - chr1_1:33700448-33700467 None:intergenic 45.0%
ATCCGAAACTGTGATCCTGA+AGG + chr1_1:33700506-33700525 Msa0019420:CDS 45.0%
GTCCTTCAGGATCACAGTTT+CGG - chr1_1:33700511-33700530 None:intergenic 45.0%
! TAAAGCATCAGAGGTCCTTC+AGG - chr1_1:33700524-33700543 None:intergenic 45.0%
AAACCTTACCGGCAAACACA+CGG - chr1_1:33700598-33700617 None:intergenic 45.0%
CAAACCTGTGGAAACCTTAC+CGG - chr1_1:33700609-33700628 None:intergenic 45.0%
TTCTCTCCAGGGACGAAATT+TGG - chr1_1:33700650-33700669 None:intergenic 45.0%
AAAGAGACAGGAGACTGTTG+AGG + chr1_1:33700718-33700737 Msa0019420:CDS 45.0%
!! GGTAACACTGTTGCTTTGGT+TGG + chr1_1:33700752-33700771 Msa0019420:CDS 45.0%
!! CACTGTTGCTTTGGTTGGTT+TGG + chr1_1:33700757-33700776 Msa0019420:CDS 45.0%
!! GATCTTCCCAAGCTTGTTGA+AGG + chr1_1:33700905-33700924 Msa0019420:CDS 45.0%
TTGCAGGATGATTTCATGGG+TGG + chr1_1:33701040-33701059 Msa0019420:CDS 45.0%
! TGACCCTGTTGTGTCATTCA+GGG + chr1_1:33701081-33701100 Msa0019420:CDS 45.0%
TCTCCCTGAATGACACAACA+GGG - chr1_1:33701087-33701106 None:intergenic 45.0%
AATCACCCAACAAGCACAAC+CGG + chr1_1:33701143-33701162 Msa0019420:CDS 45.0%
GTACATGGAAGCAAGACCAT+TGG + chr1_1:33701168-33701187 Msa0019420:CDS 45.0%
TCTTGTCCGAACAGTATGGT+TGG + chr1_1:33701263-33701282 Msa0019420:CDS 45.0%
CTTGTCCGAACAGTATGGTT+GGG + chr1_1:33701264-33701283 Msa0019420:CDS 45.0%
CTTGTCCCAACCATACTGTT+CGG - chr1_1:33701272-33701291 None:intergenic 45.0%
ATCAAGGATTCCGTTGTTGC+TGG + chr1_1:33701385-33701404 Msa0019420:CDS 45.0%
TTCCAGTGGGCATCAAAAGA+AGG + chr1_1:33701409-33701428 Msa0019420:CDS 45.0%
GTCAGATCATTCCTACTGCT+AGG + chr1_1:33701518-33701537 Msa0019420:CDS 45.0%
TAGAAGACTCTCCTAGCAGT+AGG - chr1_1:33701532-33701551 None:intergenic 45.0%
TTTGAAGAAATGCAGAGGCC+CGG + chr1_1:33701673-33701692 Msa0019420:CDS 45.0%
! ATGTTGTAAAGTGGGGTACC+GGG - chr1_1:33701694-33701713 None:intergenic 45.0%
GATGTTGTAAAGTGGGGTAC+CGG - chr1_1:33701695-33701714 None:intergenic 45.0%
AGTTGAGAGCTGCAACATCT+GGG + chr1_1:33701758-33701777 Msa0019420:CDS 45.0%
CCCAGTGTGTCTTTGATCAT+TGG + chr1_1:33701791-33701810 Msa0019420:CDS 45.0%
CCCAATGATCAAAGACACAC+TGG - chr1_1:33701795-33701814 None:intergenic 45.0%
! TTCCAAAGGATCTGAGGTCA+TGG - chr1_1:33701821-33701840 None:intergenic 45.0%
! ACCTCAGATCCTTTGGAAGT+TGG + chr1_1:33701823-33701842 Msa0019420:CDS 45.0%
TCCAACTTCCAAAGGATCTG+AGG - chr1_1:33701827-33701846 None:intergenic 45.0%
GCTTGTGATCCAACTTCCAA+AGG - chr1_1:33701835-33701854 None:intergenic 45.0%
!! ACAAGCTGCACAGCTTGTTA+TGG + chr1_1:33701849-33701868 Msa0019420:CDS 45.0%
TTGTTATGGACATCCGCAAG+AGG + chr1_1:33701863-33701882 Msa0019420:CDS 45.0%
GCTTGTCTTCAAACTCAGAG+AGG - chr1_1:33701915-33701934 None:intergenic 45.0%
AGAGGGAGAGAAAGAGAGAG+AGG - chr1_1:33697973-33697992 None:intergenic 50.0%
TGCACATGTTGACCACGGTA+TGG + chr1_1:33698859-33698878 Msa0019420:intron 50.0%
GCAGCAATCAAGAAAGGGCT+TGG - chr1_1:33698888-33698907 None:intergenic 50.0%
GACATCACCTGCAACTTCCT+GGG - chr1_1:33699550-33699569 None:intergenic 50.0%
GCTGCACTCCGTATTACTGA+TGG + chr1_1:33699756-33699775 Msa0019420:CDS 50.0%
! TACTGATGGAGCACTTGTGG+TGG + chr1_1:33699770-33699789 Msa0019420:CDS 50.0%
ACTTGTGGTGGTTGACTGTG+TGG + chr1_1:33699782-33699801 Msa0019420:CDS 50.0%
GTCGCAGCACAGTTTCAGTT+TGG - chr1_1:33699821-33699840 None:intergenic 50.0%
TGCGACAAGCTCTTGGAGAA+AGG + chr1_1:33699835-33699854 Msa0019420:CDS 50.0%
! TTCCTTGAGCTCCAGGTTGA+TGG + chr1_1:33699897-33699916 Msa0019420:CDS 50.0%
! AGGCGTACCAGACCTTTTCA+AGG + chr1_1:33699925-33699944 Msa0019420:CDS 50.0%
! GGCGTACCAGACCTTTTCAA+GGG + chr1_1:33699926-33699945 Msa0019420:CDS 50.0%
CGTTGACGAGTCCAAGATGA+TGG + chr1_1:33700109-33700128 Msa0019420:CDS 50.0%
!! ACGAGTCCAAGATGATGGAG+AGG + chr1_1:33700114-33700133 Msa0019420:CDS 50.0%
!! CAAGATGATGGAGAGGCTCT+GGG + chr1_1:33700121-33700140 Msa0019420:CDS 50.0%
!! AAGATGATGGAGAGGCTCTG+GGG + chr1_1:33700122-33700141 Msa0019420:CDS 50.0%
GTCTGATGAGAAGGACCTGA+TGG + chr1_1:33700325-33700344 Msa0019420:CDS 50.0%
TCTAGTAGGGCAGTACTTGC+TGG - chr1_1:33700389-33700408 None:intergenic 50.0%
TTTGCCGGTAAGGTTTCCAC+AGG + chr1_1:33700602-33700621 Msa0019420:CDS 50.0%
ATGGGACCAAATTTCGTCCC+TGG + chr1_1:33700641-33700660 Msa0019420:CDS 50.0%
ACTGTTGAGGATGTGCCTTG+TGG + chr1_1:33700731-33700750 Msa0019420:CDS 50.0%
CTTCATAGCTCGGATAGGGT+GGG - chr1_1:33700834-33700853 None:intergenic 50.0%
ACTTCATAGCTCGGATAGGG+TGG - chr1_1:33700835-33700854 None:intergenic 50.0%
AACAGCAACACGCACAACAG+GGG - chr1_1:33700867-33700886 None:intergenic 50.0%
GAACAGCAACACGCACAACA+GGG - chr1_1:33700868-33700887 None:intergenic 50.0%
TGAACAGCAACACGCACAAC+AGG - chr1_1:33700869-33700888 None:intergenic 50.0%
TCTGGGGAACACATTGTTGC+TGG + chr1_1:33700980-33700999 Msa0019420:CDS 50.0%
GAACACATTGTTGCTGGTGC+AGG + chr1_1:33700986-33701005 Msa0019420:CDS 50.0%
! CTGACCCTGTTGTGTCATTC+AGG + chr1_1:33701080-33701099 Msa0019420:CDS 50.0%
GTCTCCCTGAATGACACAAC+AGG - chr1_1:33701088-33701107 None:intergenic 50.0%
TACAGCCGGTTGTGCTTGTT+GGG - chr1_1:33701151-33701170 None:intergenic 50.0%
GTCTTGCTTCCATGTACAGC+CGG - chr1_1:33701165-33701184 None:intergenic 50.0%
CATGGAAGCAAGACCATTGG+AGG + chr1_1:33701171-33701190 Msa0019420:CDS 50.0%
GAAGCAAGACCATTGGAGGA+TGG + chr1_1:33701175-33701194 Msa0019420:CDS 50.0%
TCTGCAAGTCCATCCTCCAA+TGG - chr1_1:33701187-33701206 None:intergenic 50.0%
! ATTGGAGGATGGACTTGCAG+AGG + chr1_1:33701186-33701205 Msa0019420:CDS 50.0%
TCCTATTGTGCCCTCATCGA+TGG - chr1_1:33701212-33701231 None:intergenic 50.0%
! ATGAGGGCACAATAGGACCA+AGG + chr1_1:33701215-33701234 Msa0019420:CDS 50.0%
! TGAGGGCACAATAGGACCAA+GGG + chr1_1:33701216-33701235 Msa0019420:CDS 50.0%
CGAACAGTATGGTTGGGACA+AGG + chr1_1:33701270-33701289 Msa0019420:CDS 50.0%
!! TGTTTTGGACCTGAGACCAC+CGG + chr1_1:33701313-33701332 Msa0019420:CDS 50.0%
CCACTGGAATCCAGCAACAA+CGG - chr1_1:33701398-33701417 None:intergenic 50.0%
CGTTGTTGCTGGATTCCAGT+GGG + chr1_1:33701396-33701415 Msa0019420:CDS 50.0%
! CACCTTCTTTTGATGCCCAC+TGG - chr1_1:33701414-33701433 None:intergenic 50.0%
TGTGGATAGCATCAGTGTGC+AGG - chr1_1:33701489-33701508 None:intergenic 50.0%
CACACTGATGCTATCCACAG+AGG + chr1_1:33701490-33701509 Msa0019420:CDS 50.0%
ACTGATGCTATCCACAGAGG+AGG + chr1_1:33701493-33701512 Msa0019420:CDS 50.0%
TAAACAGGCTCCAGAAGCCT+GGG - chr1_1:33701577-33701596 None:intergenic 50.0%
!! GCTTCTGGAGCCTGTTTACA+TGG + chr1_1:33701579-33701598 Msa0019420:CDS 50.0%
! TCTGGAGCCTGTTTACATGG+TGG + chr1_1:33701582-33701601 Msa0019420:CDS 50.0%
! ATACCACCAAGAGCTTGCTC+AGG - chr1_1:33701619-33701638 None:intergenic 50.0%
CAAAGGACTCAATGACAGGG+AGG - chr1_1:33701726-33701745 None:intergenic 50.0%
CTCCCTGTCATTGAGTCCTT+TGG + chr1_1:33701724-33701743 Msa0019420:CDS 50.0%
TGTTGCAGCTCTCAACTGAC+TGG - chr1_1:33701755-33701774 None:intergenic 50.0%
CAGTTGAGAGCTGCAACATC+TGG + chr1_1:33701757-33701776 Msa0019420:CDS 50.0%
CACCATGACCTCAGATCCTT+TGG + chr1_1:33701816-33701835 Msa0019420:CDS 50.0%
TATGGACATCCGCAAGAGGA+AGG + chr1_1:33701867-33701886 Msa0019420:CDS 50.0%
ATGGACATCCGCAAGAGGAA+GGG + chr1_1:33701868-33701887 Msa0019420:CDS 50.0%
TTCTCGTGTGCATGTTTGGC+AGG + chr1_1:33702218-33702237 Msa0019420:three_prime_UTR 50.0%
TCTCGTGTGCATGTTTGGCA+GGG + chr1_1:33702219-33702238 Msa0019420:three_prime_UTR 50.0%
AGAGAGAGGCGGCTAAGGTA+TGG - chr1_1:33697959-33697978 None:intergenic 55.0%
GAAAGAGAGAGAGGCGGCTA+AGG - chr1_1:33697964-33697983 None:intergenic 55.0%
GGGAGAGAAAGAGAGAGAGG+CGG - chr1_1:33697970-33697989 None:intergenic 55.0%
TGCTGCGGGAATTATTGCCC+AGG + chr1_1:33699530-33699549 Msa0019420:CDS 55.0%
GGACATCACCTGCAACTTCC+TGG - chr1_1:33699551-33699570 None:intergenic 55.0%
CAGCACGGGTGTCAGTCATT+CGG - chr1_1:33699572-33699591 None:intergenic 55.0%
ACGCTCAGCTTCATCAGCAC+GGG - chr1_1:33699586-33699605 None:intergenic 55.0%
CACGCTCAGCTTCATCAGCA+CGG - chr1_1:33699587-33699606 None:intergenic 55.0%
! AGGTTCAAGGGGGAGCGTAA+TGG + chr1_1:33699669-33699688 Msa0019420:CDS 55.0%
ATGAGAAGTCGACGTGCCCA+GGG - chr1_1:33699725-33699744 None:intergenic 55.0%
!! GCACGTCGACTTCTCATCTG+AGG + chr1_1:33699728-33699747 Msa0019420:CDS 55.0%
GTGGTGGTTGACTGTGTGGA+AGG + chr1_1:33699786-33699805 Msa0019420:CDS 55.0%
ACTGTGCTGCGACAAGCTCT+TGG + chr1_1:33699828-33699847 Msa0019420:CDS 55.0%
CTCCATCAACCTGGAGCTCA+AGG - chr1_1:33699902-33699921 None:intergenic 55.0%
!! TGAGCTCCAGGTTGATGGAG+AGG + chr1_1:33699902-33699921 Msa0019420:CDS 55.0%
CCAGAGCCTCTCCATCATCT+TGG - chr1_1:33700123-33700142 None:intergenic 55.0%
!! CCAAGATGATGGAGAGGCTC+TGG + chr1_1:33700120-33700139 Msa0019420:CDS 55.0%
GTTCAGCTTCGTGCAAGCGT+GGG + chr1_1:33700195-33700214 Msa0019420:CDS 55.0%
CTCTGGGCAGTATGTGGTGA+GGG - chr1_1:33700431-33700450 None:intergenic 55.0%
! GCTTTTGGCCGTGTGTTTGC+CGG + chr1_1:33700587-33700606 Msa0019420:CDS 55.0%
AACACGCACAACAGGGGAGA+CGG - chr1_1:33700861-33700880 None:intergenic 55.0%
! GCGTGTTGCTGTTCAGTGCA+AGG + chr1_1:33700874-33700893 Msa0019420:CDS 55.0%
GTACAGCCGGTTGTGCTTGT+TGG - chr1_1:33701152-33701171 None:intergenic 55.0%
CAAGCACAACCGGCTGTACA+TGG + chr1_1:33701153-33701172 Msa0019420:CDS 55.0%
ACTTGCAGAGGCCATCGATG+AGG + chr1_1:33701198-33701217 Msa0019420:CDS 55.0%
CTTGCAGAGGCCATCGATGA+GGG + chr1_1:33701199-33701218 Msa0019420:CDS 55.0%
! GCCATCGATGAGGGCACAAT+AGG + chr1_1:33701208-33701227 Msa0019420:CDS 55.0%
CGATTCTTGGGGTCATCCCT+TGG - chr1_1:33701235-33701254 None:intergenic 55.0%
!! GTTTTGGACCTGAGACCACC+GGG + chr1_1:33701314-33701333 Msa0019420:CDS 55.0%
ATCAACCACCATGTTGGGCC+CGG - chr1_1:33701335-33701354 None:intergenic 55.0%
CCGTTGTTGCTGGATTCCAG+TGG + chr1_1:33701395-33701414 Msa0019420:CDS 55.0%
GATGCTATCCACAGAGGAGG+TGG + chr1_1:33701496-33701515 Msa0019420:CDS 55.0%
TGATCTGACCACCTCCTCTG+TGG - chr1_1:33701507-33701526 None:intergenic 55.0%
GTAAACAGGCTCCAGAAGCC+TGG - chr1_1:33701578-33701597 None:intergenic 55.0%
! CAAGAGCTTGCTCAGGAGCT+TGG - chr1_1:33701612-33701631 None:intergenic 55.0%
CAAGCTCCTGAGCAAGCTCT+TGG + chr1_1:33701610-33701629 Msa0019420:CDS 55.0%
CCTTGAGTCCCTTCCTCTTG+CGG - chr1_1:33701879-33701898 None:intergenic 55.0%
CTCGTGTGCATGTTTGGCAG+GGG + chr1_1:33702220-33702239 Msa0019420:three_prime_UTR 55.0%
AGGGCTTGGAGTCCATACCG+TGG - chr1_1:33698874-33698893 None:intergenic 60.0%
CGCAGCAGCGACTAGAGAGT+CGG - chr1_1:33699517-33699536 None:intergenic 60.0%
CGACTCTCTAGTCGCTGCTG+CGG + chr1_1:33699515-33699534 Msa0019420:CDS 60.0%
GACTCTCTAGTCGCTGCTGC+GGG + chr1_1:33699516-33699535 Msa0019420:CDS 60.0%
! CGTGCTGATGAAGCTGAGCG+TGG + chr1_1:33699585-33699604 Msa0019420:CDS 60.0%
TGAGAAGTCGACGTGCCCAG+GGG - chr1_1:33699724-33699743 None:intergenic 60.0%
GATGAGAAGTCGACGTGCCC+AGG - chr1_1:33699726-33699745 None:intergenic 60.0%
CAGGTGCTTCCTTGAGCTCC+AGG + chr1_1:33699890-33699909 Msa0019420:CDS 60.0%
!! GCTCCAGGTTGATGGAGAGG+AGG + chr1_1:33699905-33699924 Msa0019420:CDS 60.0%
ACGCCTCCTCTCCATCAACC+TGG - chr1_1:33699911-33699930 None:intergenic 60.0%
GGTTCAGCTTCGTGCAAGCG+TGG + chr1_1:33700194-33700213 Msa0019420:CDS 60.0%
! GGCAGTACTTGCTGGCAACC+AGG - chr1_1:33700381-33700400 None:intergenic 60.0%
CCTCTGGGCAGTATGTGGTG+AGG - chr1_1:33700432-33700451 None:intergenic 60.0%
CCTCACCACATACTGCCCAG+AGG + chr1_1:33700429-33700448 Msa0019420:CDS 60.0%
CGGTACCTCTGGGCAGTATG+TGG - chr1_1:33700437-33700456 None:intergenic 60.0%
TGGCCGTGTGTTTGCCGGTA+AGG + chr1_1:33700592-33700611 Msa0019420:CDS 60.0%
GGGTTTGGCTGTGAGCTGTG+AGG - chr1_1:33701557-33701576 None:intergenic 60.0%
CACAGCTCACAGCCAAACCC+AGG + chr1_1:33701557-33701576 Msa0019420:CDS 60.0%
CACAGCCAAACCCAGGCTTC+TGG + chr1_1:33701564-33701583 Msa0019420:CDS 60.0%
AGGCTCCAGAAGCCTGGGTT+TGG - chr1_1:33701572-33701591 None:intergenic 60.0%
GCTCCTGAGCAAGCTCTTGG+TGG + chr1_1:33701613-33701632 Msa0019420:CDS 60.0%
GAGAGCTGCAACATCTGGGC+AGG + chr1_1:33701762-33701781 Msa0019420:CDS 60.0%
CCGCAAGAGGAAGGGACTCA+AGG + chr1_1:33701876-33701895 Msa0019420:CDS 60.0%
ATGTTGGGCCCGGTGGTCTC+AGG - chr1_1:33701325-33701344 None:intergenic 65.0%
TGAGACCACCGGGCCCAACA+TGG + chr1_1:33701324-33701343 Msa0019420:CDS 65.0%
AACCACCATGTTGGGCCCGG+TGG - chr1_1:33701332-33701351 None:intergenic 65.0%
GACCACCGGGCCCAACATGG+TGG + chr1_1:33701327-33701346 Msa0019420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 33697810 33702292 33697810 ID=Msa0019420;Name=Msa0019420
chr1_1 mRNA 33697810 33702292 33697810 ID=Msa0019420-mRNA-1;Parent=Msa0019420;Name=Msa0019420-mRNA-1;_AED=0.29;_eAED=0.29;_QI=232|1|1|1|0.66|0.5|4|353|843
chr1_1 exon 33697810 33698001 33697810 ID=Msa0019420-mRNA-1:exon:10744;Parent=Msa0019420-mRNA-1
chr1_1 exon 33698652 33698694 33698652 ID=Msa0019420-mRNA-1:exon:10745;Parent=Msa0019420-mRNA-1
chr1_1 exon 33698788 33698875 33698788 ID=Msa0019420-mRNA-1:exon:10746;Parent=Msa0019420-mRNA-1
chr1_1 exon 33699499 33702292 33699499 ID=Msa0019420-mRNA-1:exon:10747;Parent=Msa0019420-mRNA-1
chr1_1 five_prime_UTR 33697810 33698001 33697810 ID=Msa0019420-mRNA-1:five_prime_utr;Parent=Msa0019420-mRNA-1
chr1_1 five_prime_UTR 33698652 33698691 33698652 ID=Msa0019420-mRNA-1:five_prime_utr;Parent=Msa0019420-mRNA-1
chr1_1 CDS 33698692 33698694 33698692 ID=Msa0019420-mRNA-1:cds;Parent=Msa0019420-mRNA-1
chr1_1 CDS 33698788 33698875 33698788 ID=Msa0019420-mRNA-1:cds;Parent=Msa0019420-mRNA-1
chr1_1 CDS 33699499 33701939 33699499 ID=Msa0019420-mRNA-1:cds;Parent=Msa0019420-mRNA-1
chr1_1 three_prime_UTR 33701940 33702292 33701940 ID=Msa0019420-mRNA-1:three_prime_utr;Parent=Msa0019420-mRNA-1
Gene Sequence

>Msa0019420

ATGGTGAAGTTCACAGCTGATGAGTTACGTCGTATTATGGACTACAAGCACAACATTCGTAATATGTCTGTCATTGCACATGTTGACCACGGAAAATCAACTCTAACCGACTCTCTAGTCGCTGCTGCGGGAATTATTGCCCAGGAAGTTGCAGGTGATGTCCGAATGACTGACACCCGTGCTGATGAAGCTGAGCGTGGTATTACAATCAAGTCTACCGGTATCTCACTCTACTATGAAATGACTGATGAATCTCTCAAGAGGTTCAAGGGGGAGCGTAATGGAAATGAGTATCTCATTAATCTCATTGATTCCCCTGGGCACGTCGACTTCTCATCTGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCACTTGTGGTGGTTGACTGTGTGGAAGGTGTATGTGTCCAAACTGAAACTGTGCTGCGACAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTTACAGTTAATAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTTGATGGAGAGGAGGCGTACCAGACCTTTTCAAGGGTGATTGAGAATGCTAATGTGATTATGGCTACATATGAAGATCCACTTCTTGGTGATGTTATGGTGTATCCAGAGAAAGGAACAGTTGCTTTTTCTGCTGGTTTGCATGGTTGGGCTTTTACTCTGACCAACTTTGCAAAAATGTATGCCTCAAAATTTGGCGTTGACGAGTCCAAGATGATGGAGAGGCTCTGGGGTGAAAATTTCTTTGATCCCGCCACAAAAAAATGGACCACCAAGAATACTGGTTCAGCTTCGTGCAAGCGTGGGTTTGTTCAGTTCTGTTATGAGCCTATCAAGCAGATCATCAACACTTGTATGAATGATCAGAAGGATAAGTTGTGGCCTATGCTTACAAAGCTAGGGGTCACCATGAAGTCTGATGAGAAGGACCTGATGGGTAAGCCATTGATGAAACGTGTTATGCAAACCTGGTTGCCAGCAAGTACTGCCCTACTAGAAATGATGATCTTTCATCTTCCCTCACCACATACTGCCCAGAGGTACCGTGTTGAGAATTTGTATGAGGGCCCCCTTGACGATCAATATGCAAATGCTATCCGAAACTGTGATCCTGAAGGACCTCTGATGCTTTATGTGTCAAAGATGATTCCAGCATCTGATAAAGGAAGGTTTTTTGCTTTTGGCCGTGTGTTTGCCGGTAAGGTTTCCACAGGTTTGAAGGTCAGAATTATGGGACCAAATTTCGTCCCTGGAGAGAAGAAAGATCTGTACGTGAAAAGTGTCCAGAGAACTGTTATTTGGATGGGAAAGAGACAGGAGACTGTTGAGGATGTGCCTTGTGGTAACACTGTTGCTTTGGTTGGTTTGGATCAATTTATTACAAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCCCACCCTATCCGAGCTATGAAGTTTTCCGTCTCCCCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCTTCAGATCTTCCCAAGCTTGTTGAAGGTCTCAAACGTTTGGCTAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGGGAACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAAGACTTGCAGGATGATTTCATGGGTGGTGCTGAGATTATTAAATCTGACCCTGTTGTGTCATTCAGGGAGACTGTTCTTGATAGATCAATCCGCACAGTGATGAGTAAATCACCCAACAAGCACAACCGGCTGTACATGGAAGCAAGACCATTGGAGGATGGACTTGCAGAGGCCATCGATGAGGGCACAATAGGACCAAGGGATGACCCCAAGAATCGTTCTAAGATCTTGTCCGAACAGTATGGTTGGGACAAGGATCTTGCCAAGAAAATTTGGTGTTTTGGACCTGAGACCACCGGGCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAGTATTTGAATGAAATCAAGGATTCCGTTGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGTTTTGTCGGAAGAAAACATGAGAGGCATCTGCTTTGAAGTATGTGATGTTGTCCTGCACACTGATGCTATCCACAGAGGAGGTGGTCAGATCATTCCTACTGCTAGGAGAGTCTTCTATGCCTCACAGCTCACAGCCAAACCCAGGCTTCTGGAGCCTGTTTACATGGTGGAAATCCAAGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAATCAGAAACGTGGACACGTTTTTGAAGAAATGCAGAGGCCCGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTCATTGAGTCCTTTGGATTTTCCAGTCAGTTGAGAGCTGCAACATCTGGGCAGGCTTTCCCCCAGTGTGTCTTTGATCATTGGGACACCATGACCTCAGATCCTTTGGAAGTTGGATCACAAGCTGCACAGCTTGTTATGGACATCCGCAAGAGGAAGGGACTCAAGGAGCAAATGACTCCCCTCTCTGAGTTTGAAGACAAGCTTTAA
Protein sequence

>Msa0019420

MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKRFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVMVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSASCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLTKLGVTMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPHTAQRYRVENLYEGPLDDQYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGLKVRIMGPNFVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLDRSIRTVMSKSPNKHNRLYMEARPLEDGLAEAIDEGTIGPRDDPKNRSKILSEQYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGVLSEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDTMTSDPLEVGSQAAQLVMDIRKRKGLKEQMTPLSEFEDKL*