Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019750 | sp|Q9M565|TAF11_ARATH | 68.800 | 125 | 39 | 0 | 96 | 220 | 86 | 210 | 7.83e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019750 | Msa0376590 | 0.806192 | 9.268210e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019750 | MtrunA17_Chr1g0169671 | 99.015 | 203 | 2 | 0 | 18 | 220 | 1 | 203 | 2.34e-149 | 413 |
| Msa0019750 | MtrunA17_Chr4g0019761 | 64.925 | 134 | 38 | 3 | 18 | 147 | 1 | 129 | 7.32e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0019750 | AT4G20280.1 | 68.800 | 125 | 39 | 0 | 96 | 220 | 86 | 210 | 7.96e-62 | 192 |
| Msa0019750 | AT1G20000.1 | 50.485 | 206 | 68 | 5 | 17 | 220 | 31 | 204 | 1.05e-57 | 181 |
Find 63 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGCTTCATATTAGCTTTC+TGG | 0.053296 | 1_1:+34529342 | None:intergenic |
| GTGATTGTGTTATTGGAATT+TGG | 0.143982 | 1_1:+34529628 | None:intergenic |
| AGAGATGAATTGGTTGAATT+AGG | 0.172587 | 1_1:+34529700 | None:intergenic |
| CCAATTACGATTGCAGTATC+AGG | 0.212295 | 1_1:-34527593 | Msa0019750:CDS |
| TCGGTTTCAATTGGGGATTC+TGG | 0.226078 | 1_1:+34529751 | None:intergenic |
| CCTGATACTGCAATCGTAAT+TGG | 0.229693 | 1_1:+34527593 | None:intergenic |
| TGATTGTGTTATTGGAATTT+GGG | 0.239207 | 1_1:+34529629 | None:intergenic |
| ATGCTTGGTGATTGTGTTAT+TGG | 0.256849 | 1_1:+34529621 | None:intergenic |
| AATCAATGTTGGTAGTAAAA+TGG | 0.286608 | 1_1:-34527127 | Msa0019750:three_prime_UTR |
| GAGATGAATTGGTTGAATTA+GGG | 0.297810 | 1_1:+34529701 | None:intergenic |
| TGCTGGTGACCCTCATAAAA+TGG | 0.315270 | 1_1:-34529536 | Msa0019750:CDS |
| ATTCACTCATTCCTGTTGAT+TGG | 0.326581 | 1_1:+34527147 | None:intergenic |
| GGGTCTGGTTCGGTTTCAAT+TGG | 0.326854 | 1_1:+34529742 | None:intergenic |
| CATCGAGGCTCTTTCGATAA+TGG | 0.333376 | 1_1:-34527257 | Msa0019750:exon |
| ATATGAATACTTAGCTGAAA+TGG | 0.333949 | 1_1:+34526915 | None:intergenic |
| GGTCTGGTTCGGTTTCAATT+GGG | 0.339927 | 1_1:+34529743 | None:intergenic |
| ACACAACTTCCAATCAGTTT+TGG | 0.352102 | 1_1:-34529838 | Msa0019750:CDS |
| TCTGTGGATGCATCTGGGTC+TGG | 0.355536 | 1_1:+34529727 | None:intergenic |
| CTCAGATGACAGGGCCGAAT+TGG | 0.356800 | 1_1:+34527330 | None:intergenic |
| ATCTTCTTCATCTTTATGCT+TGG | 0.365848 | 1_1:+34529606 | None:intergenic |
| ATGAAAGAGAGGAAGGAAAC+TGG | 0.371797 | 1_1:-34527354 | Msa0019750:CDS |
| CAGTTATTAGCAAGCATCAC+TGG | 0.387111 | 1_1:-34527635 | Msa0019750:CDS |
| GATTGGAAAAGCTGGACATT+TGG | 0.405971 | 1_1:+34527164 | None:intergenic |
| TTCCTGTTGATTGGAAAAGC+TGG | 0.438907 | 1_1:+34527156 | None:intergenic |
| GGATTGTGGAAGAGATGAAT+TGG | 0.441716 | 1_1:+34529690 | None:intergenic |
| GTGGGTGAAGTTGTGGAAAC+AGG | 0.442581 | 1_1:-34527554 | Msa0019750:intron |
| ATGTGCTTCTCTCAGATGAC+AGG | 0.458430 | 1_1:+34527320 | None:intergenic |
| TATGAGTCATTTCGTAGAGC+TGG | 0.466823 | 1_1:-34529368 | Msa0019750:CDS |
| CCTCACACTTGCTATCTCCT+TGG | 0.468465 | 1_1:-34526964 | Msa0019750:three_prime_UTR |
| GGATGCATCTGGGTCTGGTT+CGG | 0.468884 | 1_1:+34529732 | None:intergenic |
| TCTTCGAATGCTGCTTCGAA+TGG | 0.472886 | 1_1:+34529781 | None:intergenic |
| CATAGACGACTAAAGCTTGA+AGG | 0.473602 | 1_1:-34527300 | Msa0019750:CDS |
| TGCTACAGTGGCATGTAGGC+AGG | 0.483646 | 1_1:-34527200 | Msa0019750:three_prime_UTR |
| GGAAGGAAACTGGACCAATT+CGG | 0.484795 | 1_1:-34527344 | Msa0019750:CDS |
| GTCTGGTTCGGTTTCAATTG+GGG | 0.489280 | 1_1:+34529744 | None:intergenic |
| CTTGCTAAGTTTCCTACTGC+TGG | 0.491386 | 1_1:-34529553 | Msa0019750:CDS |
| GAACCAACACCAAAACTGAT+TGG | 0.498597 | 1_1:+34529829 | None:intergenic |
| AACAATTATGAAAGAGAGGA+AGG | 0.500999 | 1_1:-34527361 | Msa0019750:CDS |
| CAATTACGATTGCAGTATCA+GGG | 0.504962 | 1_1:-34527592 | Msa0019750:CDS |
| AGGGATTGCAAAAGTGTTCG+TGG | 0.525052 | 1_1:-34527573 | Msa0019750:CDS |
| TGATGAAGAAGAAGATAACA+TGG | 0.544085 | 1_1:-34529584 | Msa0019750:CDS |
| GTCTTCTTCATGAGTGAGAG+TGG | 0.550882 | 1_1:+34529669 | None:intergenic |
| CCAGAAAGCTAATATGAAGC+GGG | 0.557570 | 1_1:-34529342 | Msa0019750:intron |
| ATATGATTGGCTTGCTACAG+TGG | 0.565301 | 1_1:-34527212 | Msa0019750:three_prime_UTR |
| CTAGAACAATTATGAAAGAG+AGG | 0.568793 | 1_1:-34527365 | Msa0019750:CDS |
| AGTTATTAGCAAGCATCACT+GGG | 0.577334 | 1_1:-34527634 | Msa0019750:CDS |
| GAAGAGAATGAAGCAATCAA+AGG | 0.578499 | 1_1:-34529806 | Msa0019750:CDS |
| AGGAATGAGTGAATCAATGT+TGG | 0.580613 | 1_1:-34527138 | Msa0019750:three_prime_UTR |
| GTTTCAATTGGGGATTCTGG+TGG | 0.586952 | 1_1:+34529754 | None:intergenic |
| TCCAGAAAGCTAATATGAAG+CGG | 0.594557 | 1_1:-34529343 | Msa0019750:CDS |
| TTATGAGGGTCACCAGCAGT+AGG | 0.599687 | 1_1:+34529541 | None:intergenic |
| GATTGTGTTATTGGAATTTG+GGG | 0.601981 | 1_1:+34529630 | None:intergenic |
| GTCACGGTCTCACATCTCAA+AGG | 0.604671 | 1_1:-34526942 | Msa0019750:three_prime_UTR |
| AAACAAGTAAATAAAACAAG+TGG | 0.612144 | 1_1:+34527066 | None:intergenic |
| GGGATTGCAAAAGTGTTCGT+GGG | 0.618663 | 1_1:-34527572 | Msa0019750:CDS |
| ACTTGCTATCTCCTTGGTCA+CGG | 0.619087 | 1_1:-34526958 | Msa0019750:three_prime_UTR |
| TCATGAGTGAGAGTGGATTG+TGG | 0.620736 | 1_1:+34529676 | None:intergenic |
| GGCTTGCTACAGTGGCATGT+AGG | 0.629813 | 1_1:-34527204 | Msa0019750:three_prime_UTR |
| AGTGTTCGTGGGTGAAGTTG+TGG | 0.641295 | 1_1:-34527561 | Msa0019750:CDS |
| GAGATGTGAGACCGTGACCA+AGG | 0.645327 | 1_1:+34526947 | None:intergenic |
| TGTGCTTCTCTCAGATGACA+GGG | 0.664896 | 1_1:+34527321 | None:intergenic |
| CCAAGGAGATAGCAAGTGTG+AGG | 0.669074 | 1_1:+34526964 | None:intergenic |
| TCTTTAAGAGAACAACATCG+AGG | 0.777814 | 1_1:-34527272 | Msa0019750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACATAAAAACAAAATTA+GGG | + | chr1_1:34527325-34527344 | None:intergenic | 10.0% |
| !! | AAATACATAAAAACAAAATT+AGG | + | chr1_1:34527326-34527345 | None:intergenic | 10.0% |
| !! | CTAATTCTAATTATATTAAA+CGG | + | chr1_1:34529272-34529291 | None:intergenic | 10.0% |
| !!! | TTATGTATTTGTTGATTTTT+AGG | - | chr1_1:34527336-34527355 | Msa0019750:CDS | 15.0% |
| !!! | TATGTATTTGTTGATTTTTA+GGG | - | chr1_1:34527337-34527356 | Msa0019750:CDS | 15.0% |
| !!! | TTTTCTTAATTTTTTGTATG+AGG | - | chr1_1:34527637-34527656 | Msa0019750:intron | 15.0% |
| !!! | CTTTTTATTTTTTTAATGCT+AGG | - | chr1_1:34528615-34528634 | Msa0019750:intron | 15.0% |
| !! | AAAAACAAAAACAAAAACGT+TGG | + | chr1_1:34528273-34528292 | None:intergenic | 20.0% |
| !!! | TATTTTTTTAATGCTAGGTT+AGG | - | chr1_1:34528620-34528639 | Msa0019750:intron | 20.0% |
| !! | TATTTATAAACAGCTACAAT+TGG | - | chr1_1:34528780-34528799 | Msa0019750:intron | 20.0% |
| !! | TTAGAATTAGAAAAATGTGA+AGG | - | chr1_1:34529282-34529301 | Msa0019750:intron | 20.0% |
| !!! | ACATTTTATTGTGTAGTAAT+GGG | + | chr1_1:34529673-34529692 | None:intergenic | 20.0% |
| !!! | AACATTTTATTGTGTAGTAA+TGG | + | chr1_1:34529674-34529693 | None:intergenic | 20.0% |
| !! | AAACAAGTAAATAAAACAAG+TGG | + | chr1_1:34529703-34529722 | None:intergenic | 20.0% |
| !! | TTTCTATTAAGCAAAAAAGA+CGG | - | chr1_1:34529755-34529774 | Msa0019750:CDS | 20.0% |
| !! | TGATTGTGTTATTGGAATTT+GGG | + | chr1_1:34527140-34527159 | None:intergenic | 25.0% |
| ! | TGATCTTGTGTATATGTTAA+TGG | - | chr1_1:34527498-34527517 | Msa0019750:intron | 25.0% |
| !!! | TTTTGACATTTGTTGATTGT+TGG | - | chr1_1:34527573-34527592 | Msa0019750:CDS | 25.0% |
| ! | AAGAACTAAGAAGAGTAAAT+CGG | - | chr1_1:34527813-34527832 | Msa0019750:intron | 25.0% |
| !! | GTTTCTGTTATAGTTTTTCT+AGG | + | chr1_1:34527875-34527894 | None:intergenic | 25.0% |
| ! | TGATGAGATAGATAGAAATA+TGG | - | chr1_1:34527916-34527935 | Msa0019750:intron | 25.0% |
| ! | GATAGAAATATGGTATATGA+TGG | - | chr1_1:34527926-34527945 | Msa0019750:intron | 25.0% |
| !!! | ATTTGAGTTGTTAAATGAAG+AGG | - | chr1_1:34528140-34528159 | Msa0019750:intron | 25.0% |
| ! | CATAGAAAAAGTAGAAAACA+CGG | + | chr1_1:34528506-34528525 | None:intergenic | 25.0% |
| !!! | GTGTTTTCTACTTTTTCTAT+GGG | - | chr1_1:34528505-34528524 | Msa0019750:intron | 25.0% |
| !! | CTTTGTTTGTTTGATATTCT+GGG | + | chr1_1:34528572-34528591 | None:intergenic | 25.0% |
| ! | CCACTCTTAAATAATATACA+AGG | + | chr1_1:34528948-34528967 | None:intergenic | 25.0% |
| ! | CCTTGTATATTATTTAAGAG+TGG | - | chr1_1:34528945-34528964 | Msa0019750:intron | 25.0% |
| !! | AATTGGAATTGAGATTTTCT+GGG | + | chr1_1:34529159-34529178 | None:intergenic | 25.0% |
| !! | TAATTGGAATTGAGATTTTC+TGG | + | chr1_1:34529160-34529179 | None:intergenic | 25.0% |
| !! | GTACTGTTTTCATTAATCAA+AGG | - | chr1_1:34529364-34529383 | Msa0019750:CDS | 25.0% |
| !! | AATGGACCAAATATGATTTT+TGG | - | chr1_1:34529527-34529546 | Msa0019750:CDS | 25.0% |
| !! | ATGGACCAAATATGATTTTT+GGG | - | chr1_1:34529528-34529547 | Msa0019750:CDS | 25.0% |
| ! | ATGATCCCAAAAATCATATT+TGG | + | chr1_1:34529536-34529555 | None:intergenic | 25.0% |
| !!! | AATCAATGTTGGTAGTAAAA+TGG | - | chr1_1:34529639-34529658 | Msa0019750:CDS | 25.0% |
| !! | CATTTTATTGTGTAGTAATG+GGG | + | chr1_1:34529672-34529691 | None:intergenic | 25.0% |
| GAGATGAATTGGTTGAATTA+GGG | + | chr1_1:34527068-34527087 | None:intergenic | 30.0% | |
| AGAGATGAATTGGTTGAATT+AGG | + | chr1_1:34527069-34527088 | None:intergenic | 30.0% | |
| ! | GATTGTGTTATTGGAATTTG+GGG | + | chr1_1:34527139-34527158 | None:intergenic | 30.0% |
| ! | GTGATTGTGTTATTGGAATT+TGG | + | chr1_1:34527141-34527160 | None:intergenic | 30.0% |
| ATCTTCTTCATCTTTATGCT+TGG | + | chr1_1:34527163-34527182 | None:intergenic | 30.0% | |
| TGATGAAGAAGAAGATAACA+TGG | - | chr1_1:34527182-34527201 | Msa0019750:three_prime_UTR | 30.0% | |
| !! | CTTTTGATTGAAAGTGTGTT+TGG | - | chr1_1:34527548-34527567 | Msa0019750:intron | 30.0% |
| ! | TTGTTGTTGTTATTACGTGT+CGG | - | chr1_1:34528014-34528033 | Msa0019750:intron | 30.0% |
| TAGTGTTAACTTCTGGATAT+AGG | - | chr1_1:34528044-34528063 | Msa0019750:intron | 30.0% | |
| AGTGTTAACTTCTGGATATA+GGG | - | chr1_1:34528045-34528064 | Msa0019750:intron | 30.0% | |
| !! | TAAAAGATCAGGATTAGTTG+TGG | - | chr1_1:34528086-34528105 | Msa0019750:intron | 30.0% |
| AGTTTCAATGAACAGGATTT+GGG | - | chr1_1:34528166-34528185 | Msa0019750:intron | 30.0% | |
| !! | TCGTTTTTAGAGGAAACTAA+AGG | - | chr1_1:34528196-34528215 | Msa0019750:intron | 30.0% |
| TAACAGATGTCTTTAATGCT+TGG | - | chr1_1:34528222-34528241 | Msa0019750:intron | 30.0% | |
| !!! | CGTGTTTTCTACTTTTTCTA+TGG | - | chr1_1:34528504-34528523 | Msa0019750:intron | 30.0% |
| !!! | CTACTTTTTCTATGGGTAAT+TGG | - | chr1_1:34528512-34528531 | Msa0019750:intron | 30.0% |
| ! | ATTCTGGGAAGAATTTAGAA+TGG | + | chr1_1:34528557-34528576 | None:intergenic | 30.0% |
| !! | GCTTTGTTTGTTTGATATTC+TGG | + | chr1_1:34528573-34528592 | None:intergenic | 30.0% |
| CAAAGCTCAATTAATGTTGA+AGG | + | chr1_1:34528658-34528677 | None:intergenic | 30.0% | |
| CTTCAACATTAATTGAGCTT+TGG | - | chr1_1:34528656-34528675 | Msa0019750:intron | 30.0% | |
| CTATTATTTCAAAACCAGAG+AGG | + | chr1_1:34528812-34528831 | None:intergenic | 30.0% | |
| GTGTACAAAAGAAACTGTAT+TGG | + | chr1_1:34528858-34528877 | None:intergenic | 30.0% | |
| ! | TGAACTCATGTATTTCTACA+TGG | - | chr1_1:34529004-34529023 | Msa0019750:intron | 30.0% |
| ! | TATAAAGTACTAGCGCAAAT+TGG | + | chr1_1:34529055-34529074 | None:intergenic | 30.0% |
| ACAAGTTGTCTCTTATCTAT+TGG | - | chr1_1:34529097-34529116 | Msa0019750:intron | 30.0% | |
| CTAGAACAATTATGAAAGAG+AGG | - | chr1_1:34529401-34529420 | Msa0019750:CDS | 30.0% | |
| AACAATTATGAAAGAGAGGA+AGG | - | chr1_1:34529405-34529424 | Msa0019750:CDS | 30.0% | |
| !!! | GATTTTTGGGATCATATGAT+TGG | - | chr1_1:34529541-34529560 | Msa0019750:CDS | 30.0% |
| ! | ACACAACTTCCAATCAGTTT+TGG | - | chr1_1:34526928-34526947 | Msa0019750:three_prime_UTR | 35.0% |
| GAAGAGAATGAAGCAATCAA+AGG | - | chr1_1:34526960-34526979 | Msa0019750:three_prime_UTR | 35.0% | |
| ! | ATGCTTGGTGATTGTGTTAT+TGG | + | chr1_1:34527148-34527167 | None:intergenic | 35.0% |
| !! | GCATCTTAGCCATTTTATGA+GGG | + | chr1_1:34527242-34527261 | None:intergenic | 35.0% |
| !! | TGCATCTTAGCCATTTTATG+AGG | + | chr1_1:34527243-34527262 | None:intergenic | 35.0% |
| TCCAGAAAGCTAATATGAAG+CGG | - | chr1_1:34527423-34527442 | Msa0019750:intron | 35.0% | |
| ! | TGACATTTGTTGATTGTTGG+TGG | - | chr1_1:34527576-34527595 | Msa0019750:CDS | 35.0% |
| ! | GACATTTGTTGATTGTTGGT+GGG | - | chr1_1:34527577-34527596 | Msa0019750:CDS | 35.0% |
| TTTGTATGAGGATGTTGTGT+TGG | - | chr1_1:34527649-34527668 | Msa0019750:intron | 35.0% | |
| GACAATATTAGAGAGAGATG+AGG | - | chr1_1:34527708-34527727 | Msa0019750:intron | 35.0% | |
| ATATTAGAGAGAGATGAGGT+AGG | - | chr1_1:34527712-34527731 | Msa0019750:intron | 35.0% | |
| ACCTATAGTAGAAAAGACGA+TGG | - | chr1_1:34527735-34527754 | Msa0019750:intron | 35.0% | |
| ! | TCCATCGTCTTTTCTACTAT+AGG | + | chr1_1:34527739-34527758 | None:intergenic | 35.0% |
| TAGAAAAGACGATGGAAACT+AGG | - | chr1_1:34527743-34527762 | Msa0019750:intron | 35.0% | |
| ACTAAGAAGAGTAAATCGGA+TGG | - | chr1_1:34527817-34527836 | Msa0019750:intron | 35.0% | |
| GAGAGTAGTCAAATCATTAG+AGG | - | chr1_1:34527839-34527858 | Msa0019750:intron | 35.0% | |
| AGTCAAATCATTAGAGGCAA+AGG | - | chr1_1:34527845-34527864 | Msa0019750:intron | 35.0% | |
| ACTAAGTGGGATCAATTACA+TGG | + | chr1_1:34527973-34527992 | None:intergenic | 35.0% | |
| TGCTTCATAGTGTTAACTTC+TGG | - | chr1_1:34528037-34528056 | Msa0019750:intron | 35.0% | |
| AGAATTGGGGTTAAAAGATC+AGG | - | chr1_1:34528075-34528094 | Msa0019750:intron | 35.0% | |
| GAGTTTCAATGAACAGGATT+TGG | - | chr1_1:34528165-34528184 | Msa0019750:intron | 35.0% | |
| GTTTCAATGAACAGGATTTG+GGG | - | chr1_1:34528167-34528186 | Msa0019750:intron | 35.0% | |
| !! | AAACTCGTGTTTTGTTGTGA+TGG | - | chr1_1:34528330-34528349 | Msa0019750:intron | 35.0% |
| !! | AACTCGTGTTTTGTTGTGAT+GGG | - | chr1_1:34528331-34528350 | Msa0019750:intron | 35.0% |
| ATCGTAGTTCAGATTCAAGT+CGG | - | chr1_1:34528410-34528429 | Msa0019750:intron | 35.0% | |
| TAATTGGACAGTGAATGAGT+CGG | - | chr1_1:34528528-34528547 | Msa0019750:intron | 35.0% | |
| TAGCTCAGGACAAAAACTAA+GGG | + | chr1_1:34528907-34528926 | None:intergenic | 35.0% | |
| TTAGCTCAGGACAAAAACTA+AGG | + | chr1_1:34528908-34528927 | None:intergenic | 35.0% | |
| ACAAGGAGAAAACGTTAGTA+AGG | + | chr1_1:34528931-34528950 | None:intergenic | 35.0% | |
| CGCAAATTGGAATGCAAAAA+TGG | + | chr1_1:34529042-34529061 | None:intergenic | 35.0% | |
| AGTTATTAGCAAGCATCACT+GGG | - | chr1_1:34529132-34529151 | Msa0019750:intron | 35.0% | |
| CAATTACGATTGCAGTATCA+GGG | - | chr1_1:34529174-34529193 | Msa0019750:intron | 35.0% | |
| GAAGCATGTGATGCTTATAA+AGG | + | chr1_1:34529250-34529269 | None:intergenic | 35.0% | |
| ! | TCATAATTGTTCTAGCTGCA+AGG | + | chr1_1:34529396-34529415 | None:intergenic | 35.0% |
| ! | TCTTTAAGAGAACAACATCG+AGG | - | chr1_1:34529494-34529513 | Msa0019750:intron | 35.0% |
| ATTCACTCATTCCTGTTGAT+TGG | + | chr1_1:34529622-34529641 | None:intergenic | 35.0% | |
| AGGAATGAGTGAATCAATGT+TGG | - | chr1_1:34529628-34529647 | Msa0019750:CDS | 35.0% | |
| !! | CTTCCAATCAGTTTTGGTGT+TGG | - | chr1_1:34526934-34526953 | Msa0019750:three_prime_UTR | 40.0% |
| GAACCAACACCAAAACTGAT+TGG | + | chr1_1:34526940-34526959 | None:intergenic | 40.0% | |
| ! | GGTTGAATTAGGGTTTTCTG+TGG | + | chr1_1:34527058-34527077 | None:intergenic | 40.0% |
| GGATTGTGGAAGAGATGAAT+TGG | + | chr1_1:34527079-34527098 | None:intergenic | 40.0% | |
| !! | TTGGGGTTTTGATGTGATTG+TGG | + | chr1_1:34527122-34527141 | None:intergenic | 40.0% |
| TATGAGTCATTTCGTAGAGC+TGG | - | chr1_1:34527398-34527417 | Msa0019750:intron | 40.0% | |
| CCAGAAAGCTAATATGAAGC+GGG | - | chr1_1:34527424-34527443 | Msa0019750:intron | 40.0% | |
| GTGTCAGTGTTATGTCTTGT+CGG | + | chr1_1:34527608-34527627 | None:intergenic | 40.0% | |
| GGATGTGTAGTAAGACTAGA+CGG | - | chr1_1:34527670-34527689 | Msa0019750:intron | 40.0% | |
| GATGTGTAGTAAGACTAGAC+GGG | - | chr1_1:34527671-34527690 | Msa0019750:intron | 40.0% | |
| AAACTAGGCTTAGGTGGTTT+GGG | - | chr1_1:34527758-34527777 | Msa0019750:intron | 40.0% | |
| ! | TGGTATATGATGGAGCATCA+TGG | - | chr1_1:34527936-34527955 | Msa0019750:intron | 40.0% |
| TGATCCCACTTAGTGAGTTA+AGG | - | chr1_1:34527979-34527998 | Msa0019750:intron | 40.0% | |
| CAAGCCTTAACTCACTAAGT+GGG | + | chr1_1:34527986-34528005 | None:intergenic | 40.0% | |
| ATATAGGGCTGTGGAAGAAT+TGG | - | chr1_1:34528060-34528079 | Msa0019750:intron | 40.0% | |
| TATAGGGCTGTGGAAGAATT+GGG | - | chr1_1:34528061-34528080 | Msa0019750:intron | 40.0% | |
| GAGGATGAGTTTCAATGAAC+AGG | - | chr1_1:34528159-34528178 | Msa0019750:intron | 40.0% | |
| !! | GGGGTTTGAATCGTTTTTAG+AGG | - | chr1_1:34528186-34528205 | Msa0019750:intron | 40.0% |
| !! | ATGTTCACCATGGAAGTGTT+GGG | - | chr1_1:34528479-34528498 | Msa0019750:intron | 40.0% |
| ! | GTATTGGTCTCTCTCTTACA+GGG | + | chr1_1:34528842-34528861 | None:intergenic | 40.0% |
| ! | TGTATTGGTCTCTCTCTTAC+AGG | + | chr1_1:34528843-34528862 | None:intergenic | 40.0% |
| !! | ACACATGAACTGCTTTTCGT+AGG | - | chr1_1:34528874-34528893 | Msa0019750:intron | 40.0% |
| !! | TGAACTGCTTTTCGTAGGTT+AGG | - | chr1_1:34528879-34528898 | Msa0019750:intron | 40.0% |
| !! | GAACTGCTTTTCGTAGGTTA+GGG | - | chr1_1:34528880-34528899 | Msa0019750:intron | 40.0% |
| ! | AACGTTAGTAAGGTTAGCTC+AGG | + | chr1_1:34528921-34528940 | None:intergenic | 40.0% |
| AGAGTGGTTTCTGTCATGTT+AGG | - | chr1_1:34528961-34528980 | Msa0019750:intron | 40.0% | |
| ! | GCTTGCTAATAACTGCTTAC+AGG | + | chr1_1:34529126-34529145 | None:intergenic | 40.0% |
| CAGTTATTAGCAAGCATCAC+TGG | - | chr1_1:34529131-34529150 | Msa0019750:intron | 40.0% | |
| CCTGATACTGCAATCGTAAT+TGG | + | chr1_1:34529176-34529195 | None:intergenic | 40.0% | |
| CCAATTACGATTGCAGTATC+AGG | - | chr1_1:34529173-34529192 | Msa0019750:intron | 40.0% | |
| ATGAAAGAGAGGAAGGAAAC+TGG | - | chr1_1:34529412-34529431 | Msa0019750:intron | 40.0% | |
| CATAGACGACTAAAGCTTGA+AGG | - | chr1_1:34529466-34529485 | Msa0019750:intron | 40.0% | |
| !! | ATATGATTGGCTTGCTACAG+TGG | - | chr1_1:34529554-34529573 | Msa0019750:CDS | 40.0% |
| GATTGGAAAAGCTGGACATT+TGG | + | chr1_1:34529605-34529624 | None:intergenic | 40.0% | |
| ! | TTCCTGTTGATTGGAAAAGC+TGG | + | chr1_1:34529613-34529632 | None:intergenic | 40.0% |
| ! | TCTTCGAATGCTGCTTCGAA+TGG | + | chr1_1:34526988-34527007 | None:intergenic | 45.0% |
| GTTTCAATTGGGGATTCTGG+TGG | + | chr1_1:34527015-34527034 | None:intergenic | 45.0% | |
| TCGGTTTCAATTGGGGATTC+TGG | + | chr1_1:34527018-34527037 | None:intergenic | 45.0% | |
| !! | GTCTGGTTCGGTTTCAATTG+GGG | + | chr1_1:34527025-34527044 | None:intergenic | 45.0% |
| !! | GGTCTGGTTCGGTTTCAATT+GGG | + | chr1_1:34527026-34527045 | None:intergenic | 45.0% |
| ! | GGTTTTCTGTGGATGCATCT+GGG | + | chr1_1:34527047-34527066 | None:intergenic | 45.0% |
| !! | TCATGAGTGAGAGTGGATTG+TGG | + | chr1_1:34527093-34527112 | None:intergenic | 45.0% |
| GTCTTCTTCATGAGTGAGAG+TGG | + | chr1_1:34527100-34527119 | None:intergenic | 45.0% | |
| CTTGCTAAGTTTCCTACTGC+TGG | - | chr1_1:34527213-34527232 | Msa0019750:three_prime_UTR | 45.0% | |
| TGCTGGTGACCCTCATAAAA+TGG | - | chr1_1:34527230-34527249 | Msa0019750:three_prime_UTR | 45.0% | |
| !! | CCCGCTTCATATTAGCTTTC+TGG | + | chr1_1:34527427-34527446 | None:intergenic | 45.0% |
| AGACGATGGAAACTAGGCTT+AGG | - | chr1_1:34527749-34527768 | Msa0019750:intron | 45.0% | |
| GAAACTAGGCTTAGGTGGTT+TGG | - | chr1_1:34527757-34527776 | Msa0019750:intron | 45.0% | |
| CCAAGCCTTAACTCACTAAG+TGG | + | chr1_1:34527987-34528006 | None:intergenic | 45.0% | |
| CCACTTAGTGAGTTAAGGCT+TGG | - | chr1_1:34527984-34528003 | Msa0019750:intron | 45.0% | |
| AACTTCTGGATATAGGGCTG+TGG | - | chr1_1:34528051-34528070 | Msa0019750:intron | 45.0% | |
| ATAGGGCTGTGGAAGAATTG+GGG | - | chr1_1:34528062-34528081 | Msa0019750:intron | 45.0% | |
| !! | TCAGGATTAGTTGTGGCTGT+TGG | - | chr1_1:34528093-34528112 | Msa0019750:intron | 45.0% |
| !! | CAGGATTAGTTGTGGCTGTT+GGG | - | chr1_1:34528094-34528113 | Msa0019750:intron | 45.0% |
| ! | AGATTCAAGTCGGTTCAGTG+AGG | - | chr1_1:34528420-34528439 | Msa0019750:intron | 45.0% |
| ! | GATTCAAGTCGGTTCAGTGA+GGG | - | chr1_1:34528421-34528440 | Msa0019750:intron | 45.0% |
| CATCTCACGTTAGAGCCATT+CGG | + | chr1_1:34528462-34528481 | None:intergenic | 45.0% | |
| CTAACGTGAGATGTTCACCA+TGG | - | chr1_1:34528469-34528488 | Msa0019750:intron | 45.0% | |
| ! | GATGTTCACCATGGAAGTGT+TGG | - | chr1_1:34528478-34528497 | Msa0019750:intron | 45.0% |
| TCAACAATTGCACGTGTCTG+TGG | + | chr1_1:34528729-34528748 | None:intergenic | 45.0% | |
| !! | ACAATTGGCTTGATCCTCTC+TGG | - | chr1_1:34528795-34528814 | Msa0019750:intron | 45.0% |
| !! | AGGGATTGCAAAAGTGTTCG+TGG | - | chr1_1:34529193-34529212 | Msa0019750:intron | 45.0% |
| !! | GGGATTGCAAAAGTGTTCGT+GGG | - | chr1_1:34529194-34529213 | Msa0019750:intron | 45.0% |
| CTTAGAAACATGATGTGCGC+AGG | + | chr1_1:34529328-34529347 | None:intergenic | 45.0% | |
| GGAAGGAAACTGGACCAATT+CGG | - | chr1_1:34529422-34529441 | Msa0019750:intron | 45.0% | |
| TGTGCTTCTCTCAGATGACA+GGG | + | chr1_1:34529448-34529467 | None:intergenic | 45.0% | |
| ATGTGCTTCTCTCAGATGAC+AGG | + | chr1_1:34529449-34529468 | None:intergenic | 45.0% | |
| CATCGAGGCTCTTTCGATAA+TGG | - | chr1_1:34529509-34529528 | Msa0019750:intron | 45.0% | |
| ! | GTCCAGCTTTTCCAATCAAC+AGG | - | chr1_1:34529608-34529627 | Msa0019750:CDS | 45.0% |
| !! | ACTTGCTATCTCCTTGGTCA+CGG | - | chr1_1:34529808-34529827 | Msa0019750:CDS | 45.0% |
| !! | GGGTCTGGTTCGGTTTCAAT+TGG | + | chr1_1:34527027-34527046 | None:intergenic | 50.0% |
| ! | GGGTTTTCTGTGGATGCATC+TGG | + | chr1_1:34527048-34527067 | None:intergenic | 50.0% |
| TTATGAGGGTCACCAGCAGT+AGG | + | chr1_1:34527228-34527247 | None:intergenic | 50.0% | |
| CGATGGAAACTAGGCTTAGG+TGG | - | chr1_1:34527752-34527771 | Msa0019750:intron | 50.0% | |
| ! | GATTAGTTGTGGCTGTTGGG+TGG | - | chr1_1:34528097-34528116 | Msa0019750:intron | 50.0% |
| ACAATTGCACGTGTCTGTGG+TGG | + | chr1_1:34528726-34528745 | None:intergenic | 50.0% | |
| AGTGTTCGTGGGTGAAGTTG+TGG | - | chr1_1:34529205-34529224 | Msa0019750:intron | 50.0% | |
| GTGGGTGAAGTTGTGGAAAC+AGG | - | chr1_1:34529212-34529231 | Msa0019750:intron | 50.0% | |
| CCAAGGAGATAGCAAGTGTG+AGG | + | chr1_1:34529805-34529824 | None:intergenic | 50.0% | |
| !! | CCTCACACTTGCTATCTCCT+TGG | - | chr1_1:34529802-34529821 | Msa0019750:CDS | 50.0% |
| GTCACGGTCTCACATCTCAA+AGG | - | chr1_1:34529824-34529843 | Msa0019750:CDS | 50.0% | |
| GGATGCATCTGGGTCTGGTT+CGG | + | chr1_1:34527037-34527056 | None:intergenic | 55.0% | |
| TCTGTGGATGCATCTGGGTC+TGG | + | chr1_1:34527042-34527061 | None:intergenic | 55.0% | |
| ! | TAGGTGGTTTGGGCGTGTAG+CGG | - | chr1_1:34527768-34527787 | Msa0019750:intron | 55.0% |
| ! | GAGCCATTCGGTGACTTTCG+CGG | + | chr1_1:34528450-34528469 | None:intergenic | 55.0% |
| ACACGGACCCAACACTTCCA+TGG | + | chr1_1:34528489-34528508 | None:intergenic | 55.0% | |
| CTCAGATGACAGGGCCGAAT+TGG | + | chr1_1:34529439-34529458 | None:intergenic | 55.0% | |
| !! | GGCTTGCTACAGTGGCATGT+AGG | - | chr1_1:34529562-34529581 | Msa0019750:CDS | 55.0% |
| TGCTACAGTGGCATGTAGGC+AGG | - | chr1_1:34529566-34529585 | Msa0019750:CDS | 55.0% | |
| GAGATGTGAGACCGTGACCA+AGG | + | chr1_1:34529822-34529841 | None:intergenic | 55.0% | |
| ! | AGGTGGTTTGGGCGTGTAGC+GGG | - | chr1_1:34527769-34527788 | Msa0019750:intron | 60.0% |
| CGACCGCGAAAGTCACCGAA+TGG | - | chr1_1:34528444-34528463 | Msa0019750:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 34526916 | 34529872 | 34526916 | ID=Msa0019750;Name=Msa0019750 |
| chr1_1 | mRNA | 34526916 | 34529872 | 34526916 | ID=Msa0019750-mRNA-1;Parent=Msa0019750;Name=Msa0019750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|1|1|0.33|0.5|4|344|220 |
| chr1_1 | exon | 34526916 | 34527387 | 34526916 | ID=Msa0019750-mRNA-1:exon:10942;Parent=Msa0019750-mRNA-1 |
| chr1_1 | exon | 34527555 | 34527654 | 34527555 | ID=Msa0019750-mRNA-1:exon:10941;Parent=Msa0019750-mRNA-1 |
| chr1_1 | exon | 34529343 | 34529430 | 34529343 | ID=Msa0019750-mRNA-1:exon:10940;Parent=Msa0019750-mRNA-1 |
| chr1_1 | exon | 34529526 | 34529872 | 34529526 | ID=Msa0019750-mRNA-1:exon:10939;Parent=Msa0019750-mRNA-1 |
| chr1_1 | CDS | 34529526 | 34529872 | 34529526 | ID=Msa0019750-mRNA-1:cds;Parent=Msa0019750-mRNA-1 |
| chr1_1 | CDS | 34529343 | 34529430 | 34529343 | ID=Msa0019750-mRNA-1:cds;Parent=Msa0019750-mRNA-1 |
| chr1_1 | CDS | 34527555 | 34527654 | 34527555 | ID=Msa0019750-mRNA-1:cds;Parent=Msa0019750-mRNA-1 |
| chr1_1 | CDS | 34527260 | 34527387 | 34527260 | ID=Msa0019750-mRNA-1:cds;Parent=Msa0019750-mRNA-1 |
| chr1_1 | three_prime_UTR | 34526916 | 34527259 | 34526916 | ID=Msa0019750-mRNA-1:three_prime_utr;Parent=Msa0019750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
