AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376590 MtrunA17_Chr3g0126961 93.476 797 21 1 1 766 1 797 0.0 1505
Msa0376590 MtrunA17_Chr5g0409191 37.162 148 85 2 618 765 240 379 1.43e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376590 AT5G53020.3 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.4 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.5 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.1 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.8 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.10 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.9 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0376590 AT5G53020.6 42.625 739 351 14 59 766 17 713 7.00e-150 455
Msa0376590 AT5G53020.7 42.625 739 351 14 59 766 17 713 7.00e-150 455
Msa0376590 AT5G53020.2 43.551 721 333 15 77 766 26 703 3.16e-149 453
Msa0376590 AT3G45900.1 35.065 231 119 7 534 760 170 373 1.30e-19 92.4

Find 122 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATCAAAGATTGTTTC+TGG 0.151138 3_1:-76688117 Msa0376590:CDS
TAGCAATAATGGAACTTAAA+AGG 0.208389 3_1:-76687916 Msa0376590:three_prime_UTR
TCAAGGAAGTGCACAGCTTT+TGG 0.210804 3_1:-76690933 Msa0376590:CDS
TGCAAAATTTCACAAGGATT+TGG 0.229217 3_1:-76690315 Msa0376590:CDS
CTAAACCTCTTTGAACTTCA+TGG 0.240686 3_1:+76688013 None:intergenic
ATGAGAAGTTAGAGGCATTT+AGG 0.253487 3_1:-76689424 Msa0376590:CDS
GTTCAAAAGGAAGTGATAAA+TGG 0.266617 3_1:-76690893 Msa0376590:CDS
GCATCAATTTCTCTGTGATT+TGG 0.278601 3_1:+76688945 None:intergenic
GGAATGTATCCAATATATTT+TGG 0.307642 3_1:-76691046 Msa0376590:CDS
CTCAAGGTCACCTATAATTC+TGG 0.315128 3_1:+76687978 None:intergenic
TAATAACATCAATTTGTATA+TGG 0.320958 3_1:-76687813 Msa0376590:three_prime_UTR
GAGACATGACAAGATGAAAT+TGG 0.321303 3_1:-76689321 Msa0376590:CDS
CGGTCGTGCTGTTAAGCATT+TGG 0.322816 3_1:-76690420 Msa0376590:CDS
ATGCTAAACGTTTGGAAGAT+TGG 0.326615 3_1:-76689538 Msa0376590:CDS
GTTCGGACAGCCAGAATTAT+AGG 0.330038 3_1:-76687988 Msa0376590:CDS
TTCAAAAGGAAGTGATAAAT+GGG 0.332640 3_1:-76690892 Msa0376590:CDS
CAAGAAACACCAAAATATAT+TGG 0.335840 3_1:+76691037 None:intergenic
ACTTTGCTGAATAAACAAAT+TGG 0.339160 3_1:-76688705 Msa0376590:CDS
TTCAAAGAGGTTTAGAAGTT+CGG 0.354728 3_1:-76688005 Msa0376590:CDS
TCCTGCTAATGCTAAACGTT+TGG 0.356798 3_1:-76689546 Msa0376590:CDS
GTTTGAGAAGGTAGCAATAA+TGG 0.357643 3_1:-76687927 Msa0376590:exon
TGCTAAACGTTTGGAAGATT+GGG 0.358713 3_1:-76689537 Msa0376590:CDS
CAAAGAGGAGTCTGATTTGA+TGG 0.372221 3_1:-76690360 Msa0376590:CDS
GTTCAGCTTCAAGATGTCTT+TGG 0.373026 3_1:+76690444 None:intergenic
ACCAATTTGCTTCAAAATTG+AGG 0.378661 3_1:-76689253 Msa0376590:CDS
GAGAAAGGAGCTAGAAGAAA+AGG 0.388393 3_1:-76690582 Msa0376590:CDS
GAAATTGGAGAGCTTATTGT+TGG 0.396045 3_1:-76689306 Msa0376590:CDS
TTAAGTTATCAAAGGCTAGA+AGG 0.396326 3_1:-76690211 Msa0376590:CDS
ATTGTTGAAACTATGCTTCA+AGG 0.396530 3_1:-76690950 Msa0376590:CDS
ATTGAAGGAAATGGAGGGTT+TGG 0.398883 3_1:-76690645 Msa0376590:CDS
ATTAGTGAAGATAGCAAAGT+TGG 0.402279 3_1:-76688753 Msa0376590:CDS
CAAAGATATATTGTTGCAAC+AGG 0.409586 3_1:-76688156 Msa0376590:CDS
TTTATTCAGCAAAGTAATCA+AGG 0.412723 3_1:+76688713 None:intergenic
AAGATTGTTTCTGGATTTGT+TGG 0.423223 3_1:-76688108 Msa0376590:CDS
AGCAATAATGGAACTTAAAA+GGG 0.425201 3_1:-76687915 Msa0376590:three_prime_UTR
TCCAAACGTTTAGCATTAGC+AGG 0.434400 3_1:+76689545 None:intergenic
GATGGTTCAGAAATTAACTT+TGG 0.439228 3_1:-76690342 Msa0376590:CDS
TCAGTCACACTTGGAGGGAT+TGG 0.440819 3_1:-76689363 Msa0376590:CDS
TGTTGGAGTGGCAGAAGAGA+TGG 0.441207 3_1:-76688091 Msa0376590:CDS
CAAAACTGCTTTCATTGAGC+TGG 0.443907 3_1:-76690474 Msa0376590:CDS
GAAGGAAATGGAGGGTTTGG+TGG 0.446618 3_1:-76690642 Msa0376590:CDS
ATTGATGCTGCTGAAAAGAT+AGG 0.447135 3_1:-76688930 Msa0376590:CDS
GAATCAGAAATTGAAGGAAA+TGG 0.447469 3_1:-76690654 Msa0376590:CDS
GAGCTTATTGTTGGAGAGAG+TGG 0.451097 3_1:-76689297 Msa0376590:CDS
TTGTTTCTAAAGCAGTTTGA+AGG 0.452487 3_1:+76689230 None:intergenic
AGATAAGAAGATTGAAGAAG+AGG 0.454313 3_1:-76690612 Msa0376590:CDS
AAGAGCATTCTTCTGATCTC+AGG 0.461075 3_1:-76690502 Msa0376590:CDS
GTCAAATTGATCATGATTCA+AGG 0.469034 3_1:+76689064 None:intergenic
ATTCTAATTGAAAGGTTGAC+AGG 0.470453 3_1:-76688804 Msa0376590:CDS
GATCAAAGATGAGAAGTTAG+AGG 0.475117 3_1:-76689432 Msa0376590:CDS
AATGATGGAAACTTTGATTG+AGG 0.477833 3_1:-76689111 Msa0376590:CDS
GATTGAGGAAGTTTGTGAAA+AGG 0.480885 3_1:-76689096 Msa0376590:CDS
GGAAATGGAGGGTTTGGTGG+AGG 0.482360 3_1:-76690639 Msa0376590:CDS
GTTCTCCGCGATTTGCATAG+AGG 0.490823 3_1:+76688247 None:intergenic
AAGAAGAAAAGCATGTTTGT+CGG 0.491398 3_1:-76689001 Msa0376590:CDS
AGCAACTAATTCTAATTGAA+AGG 0.495011 3_1:-76688812 Msa0376590:CDS
AAATTACTCAAGATCCTGTC+TGG 0.496376 3_1:-76689181 Msa0376590:CDS
TGCTGCATGCCTCTTGCACT+AGG 0.496644 3_1:+76690077 None:intergenic
AGAGGAACTTATTTCTGTCA+TGG 0.499376 3_1:-76690387 Msa0376590:CDS
GATTGTGTGGAAAGTTCAAA+AGG 0.499495 3_1:-76690906 Msa0376590:CDS
ACCACTTCTCCTAAGTGTCT+TGG 0.500605 3_1:+76687653 None:intergenic
AGTGATAATATTGATGATGA+TGG 0.503396 3_1:-76691067 Msa0376590:CDS
GCAGCTTCAGTCACACTTGG+AGG 0.505207 3_1:-76689369 Msa0376590:CDS
TTGCTGCACAAGAACAAAGC+TGG 0.505614 3_1:-76690772 Msa0376590:CDS
AGAAGAAAAGCATGTTTGTC+GGG 0.506234 3_1:-76689000 Msa0376590:CDS
GCATTTGGATGCTACAAAAG+AGG 0.512415 3_1:-76690405 Msa0376590:CDS
ACGTTTAGCATTAGCAGGAA+TGG 0.513905 3_1:+76689550 None:intergenic
AAAGCTGAAAAGTGCTGAGA+TGG 0.516211 3_1:-76690861 Msa0376590:CDS
TCAGAAATTGAAGGAAATGG+AGG 0.519896 3_1:-76690651 Msa0376590:CDS
AAAGCAAATGCTGTTGAAAG+AGG 0.523700 3_1:-76690234 Msa0376590:CDS
GATGAACTTGAGTTCTAGAA+AGG 0.526184 3_1:-76690108 Msa0376590:CDS
CTTTGATACTGCACAGGAGT+AGG 0.526778 3_1:+76688969 None:intergenic
AAGATGGATCTTCATGCGCT+TGG 0.528734 3_1:-76688864 Msa0376590:CDS
CTGAGCATGAAACGGAAAAG+TGG 0.530949 3_1:-76690181 Msa0376590:CDS
GAAGAGATGGAGAAAAGTGC+TGG 0.533742 3_1:-76688078 Msa0376590:CDS
TGAATTGAATCAGAAATTGA+AGG 0.534394 3_1:-76690660 Msa0376590:CDS
GAAAGAGGTTAAGTTATCAA+AGG 0.545103 3_1:-76690219 Msa0376590:CDS
GCATGTTATCCAAGACACTT+AGG 0.547816 3_1:-76687662 Msa0376590:three_prime_UTR
AAAACAATTCCAGTGGAAGA+TGG 0.549249 3_1:-76688880 Msa0376590:CDS
GGGTGAGAGCTGAGACAGAA+AGG 0.549921 3_1:-76689517 Msa0376590:CDS
AGGAAACTTCGACAACAGAT+TGG 0.551051 3_1:-76690737 Msa0376590:CDS
TCCAAGACACTTAGGAGAAG+TGG 0.552872 3_1:-76687654 None:intergenic
GAAGCATGCTGAGCATGAAA+CGG 0.556352 3_1:-76690189 Msa0376590:CDS
ACAAATAAACACTTGAGGAA+AGG 0.561365 3_1:+76687878 None:intergenic
GAAAATAATTCAAATGTGAC+TGG 0.561641 3_1:-76687779 Msa0376590:three_prime_UTR
AAAGCTGGTTTAGCGAAAGA+AGG 0.572971 3_1:-76690757 Msa0376590:CDS
CAGAAATTGAAGGAAATGGA+GGG 0.572990 3_1:-76690650 Msa0376590:CDS
CATTCGTTTGCAAAGATCGT+CGG 0.573921 3_1:+76688656 None:intergenic
CAGCTTCAGTCACACTTGGA+GGG 0.574526 3_1:-76689368 Msa0376590:CDS
CATGAAGATCCATCTTCCAC+TGG 0.574920 3_1:+76688871 None:intergenic
TCAAATTGATCATGATTCAA+GGG 0.575779 3_1:+76689065 None:intergenic
AGACATCTTGAAGCTGAACT+CGG 0.580639 3_1:-76690440 Msa0376590:CDS
TTTGGACTTTGATACTGCAC+AGG 0.581379 3_1:+76688963 None:intergenic
AAGGAATGATATGTTTGAGA+AGG 0.585836 3_1:-76687939 Msa0376590:CDS
TTCTGTCATGGAGAACAAAG+AGG 0.590110 3_1:-76690375 Msa0376590:CDS
AGAGAATCTGCTAAACGTGA+AGG 0.597592 3_1:-76690527 Msa0376590:CDS
CTATTCCATGAAGTTCAAAG+AGG 0.600346 3_1:-76688018 Msa0376590:CDS
AGGTGACCTTGAGGGAACAT+TGG 0.600537 3_1:-76687968 Msa0376590:CDS
AAAGCAGCTTCAGTCACACT+TGG 0.601610 3_1:-76689372 Msa0376590:CDS
GAGTATCTTACAAGATCAAG+AGG 0.601910 3_1:-76688842 Msa0376590:CDS
GAGGGAACATTGGCTCGTGA+AGG 0.602293 3_1:-76687958 Msa0376590:CDS
CAGAATTATAGGTGACCTTG+AGG 0.607753 3_1:-76687977 Msa0376590:CDS
ACACTTGGAGGGATTGGTGA+AGG 0.608312 3_1:-76689357 Msa0376590:CDS
TGTTTCTGGATTTGTTGGAG+TGG 0.609479 3_1:-76688103 Msa0376590:CDS
CACGAGCCAATGTTCCCTCA+AGG 0.611253 3_1:+76687962 None:intergenic
AAGATTGTGAAGAGAAAACC+AGG 0.612078 3_1:-76689149 Msa0376590:CDS
CGACGATCTTTGCAAACGAA+TGG 0.616168 3_1:-76688655 Msa0376590:intron
ATGATGCAAAACAATTCCAG+TGG 0.616654 3_1:-76688887 Msa0376590:CDS
GCTGCATGCCTCTTGCACTA+GGG 0.621766 3_1:+76690078 None:intergenic
TGAGGAAGTTTGTGAAAAGG+AGG 0.626585 3_1:-76689093 Msa0376590:CDS
ATCTTGACTCTAGACCAGAC+AGG 0.627708 3_1:+76689167 None:intergenic
TCAAAAGGAAGTGATAAATG+GGG 0.629196 3_1:-76690891 Msa0376590:CDS
AAGTGGAGAGAAGCTTCAGA+AGG 0.629714 3_1:-76690164 Msa0376590:CDS
TGAGTAATTTCTGAAGATTG+CGG 0.630512 3_1:+76689194 None:intergenic
AGAATTATAGGTGACCTTGA+GGG 0.630636 3_1:-76687976 Msa0376590:CDS
CAAAAGGAAGTGATAAATGG+GGG 0.635891 3_1:-76690890 Msa0376590:CDS
GGAGATTGCAAAATTTCACA+AGG 0.637872 3_1:-76690321 Msa0376590:CDS
TATAGACAAATAAACACTTG+AGG 0.646326 3_1:+76687873 None:intergenic
AGAAAAGCATGTTTGTCGGG+AGG 0.653415 3_1:-76688997 Msa0376590:CDS
AGAAGTTAGAGGCATTTAGG+TGG 0.657198 3_1:-76689421 Msa0376590:CDS
ATGCAACTCTGATTGAACAA+AGG 0.686777 3_1:-76689493 Msa0376590:CDS
AATGTCCTCTATGCAAATCG+CGG 0.688926 3_1:-76688252 Msa0376590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAATATAAATTCAAAT+TGG - chr3_1:76688926-76688945 Msa0376590:CDS 10.0%
!!! ATTTTTTAGAATATTGCAAA+TGG + chr3_1:76690302-76690321 None:intergenic 15.0%
!! TCATTTATGATATTGAAAAA+TGG - chr3_1:76690363-76690382 Msa0376590:CDS 15.0%
!! TAATAACATCAATTTGTATA+TGG - chr3_1:76690933-76690952 Msa0376590:CDS 15.0%
!!! GTTCATCAACATATTTTTAA+AGG + chr3_1:76688625-76688644 None:intergenic 20.0%
!!! TTATTTTATATAAGCTCTCA+AGG + chr3_1:76688987-76689006 None:intergenic 20.0%
!!! AATTGTTTTGCATCATTAAA+GGG + chr3_1:76689855-76689874 None:intergenic 20.0%
!! AATTAAATCATATCTCATCA+TGG + chr3_1:76690246-76690265 None:intergenic 20.0%
!!! AGTGATAATATTGATGATGA+TGG - chr3_1:76687679-76687698 Msa0376590:three_prime_UTR 25.0%
!! GGAATGTATCCAATATATTT+TGG - chr3_1:76687700-76687719 Msa0376590:three_prime_UTR 25.0%
! CAAGAAACACCAAAATATAT+TGG + chr3_1:76687712-76687731 None:intergenic 25.0%
! TTCAAAAGGAAGTGATAAAT+GGG - chr3_1:76687854-76687873 Msa0376590:three_prime_UTR 25.0%
! AAAGCAAATGAAAAAGTTGT+AGG - chr3_1:76687946-76687965 Msa0376590:CDS 25.0%
! AAGCAAATGAAAAAGTTGTA+GGG - chr3_1:76687947-76687966 Msa0376590:CDS 25.0%
!!! TAAGAGTGTTTGAGAAAAAA+AGG - chr3_1:76688049-76688068 Msa0376590:CDS 25.0%
!!! AAGAGTGTTTGAGAAAAAAA+GGG - chr3_1:76688050-76688069 Msa0376590:CDS 25.0%
! TGAATTGAATCAGAAATTGA+AGG - chr3_1:76688086-76688105 Msa0376590:CDS 25.0%
!! TTGTTCATTTGAAATATGTG+AGG + chr3_1:76688712-76688731 None:intergenic 25.0%
!!! TCTCAAGTTTATTTGTTGTT+AGG - chr3_1:76688816-76688835 Msa0376590:CDS 25.0%
!! TTAAGTTGTTTATGCAAACA+AGG + chr3_1:76688842-76688861 None:intergenic 25.0%
! TTGTACACTAAAGTTATGTT+TGG + chr3_1:76689110-76689129 None:intergenic 25.0%
! TCAAATTGATCATGATTCAA+GGG + chr3_1:76689684-76689703 None:intergenic 25.0%
!!! TCTTCTTCAATCTTATTTTC+TGG + chr3_1:76689732-76689751 None:intergenic 25.0%
!!! GAATTGTTTTGCATCATTAA+AGG + chr3_1:76689856-76689875 None:intergenic 25.0%
! AGCAACTAATTCTAATTGAA+AGG - chr3_1:76689934-76689953 Msa0376590:intron 25.0%
! TTTATTCAGCAAAGTAATCA+AGG + chr3_1:76690036-76690055 None:intergenic 25.0%
! ACTTTGCTGAATAAACAAAT+TGG - chr3_1:76690041-76690060 Msa0376590:intron 25.0%
! ACATTAAAAAGAAGCCAAAA+AGG + chr3_1:76690343-76690362 None:intergenic 25.0%
! ACTGAATAATGCAAGAAAAA+AGG - chr3_1:76690520-76690539 Msa0376590:CDS 25.0%
! ATTCAATCAAAGATTGTTTC+TGG - chr3_1:76690629-76690648 Msa0376590:CDS 25.0%
!! TAGCAATAATGGAACTTAAA+AGG - chr3_1:76690830-76690849 Msa0376590:CDS 25.0%
!! AGCAATAATGGAACTTAAAA+GGG - chr3_1:76690831-76690850 Msa0376590:CDS 25.0%
! TATAGACAAATAAACACTTG+AGG + chr3_1:76690876-76690895 None:intergenic 25.0%
! GAAAATAATTCAAATGTGAC+TGG - chr3_1:76690967-76690986 Msa0376590:CDS 25.0%
! TTTTTCTCAACTTCAACATG+TGG + chr3_1:76687766-76687785 None:intergenic 30.0%
ATTGTTGAAACTATGCTTCA+AGG - chr3_1:76687796-76687815 Msa0376590:three_prime_UTR 30.0%
GTTCAAAAGGAAGTGATAAA+TGG - chr3_1:76687853-76687872 Msa0376590:three_prime_UTR 30.0%
TCAAAAGGAAGTGATAAATG+GGG - chr3_1:76687855-76687874 Msa0376590:three_prime_UTR 30.0%
GAATCAGAAATTGAAGGAAA+TGG - chr3_1:76688092-76688111 Msa0376590:CDS 30.0%
AGATAAGAAGATTGAAGAAG+AGG - chr3_1:76688134-76688153 Msa0376590:CDS 30.0%
GATGGTTCAGAAATTAACTT+TGG - chr3_1:76688404-76688423 Msa0376590:intron 30.0%
TGCAAAATTTCACAAGGATT+TGG - chr3_1:76688431-76688450 Msa0376590:intron 30.0%
GAAAGAGGTTAAGTTATCAA+AGG - chr3_1:76688527-76688546 Msa0376590:intron 30.0%
TTAAGTTATCAAAGGCTAGA+AGG - chr3_1:76688535-76688554 Msa0376590:intron 30.0%
CATAAGTCTTCATTTCTTTG+TGG + chr3_1:76688768-76688787 None:intergenic 30.0%
AGACAGTTTGTGAAAACTTA+TGG + chr3_1:76689046-76689065 None:intergenic 30.0%
! ACCAATTTGCTTCAAAATTG+AGG - chr3_1:76689493-76689512 Msa0376590:CDS 30.0%
!! TTGTTTCTAAAGCAGTTTGA+AGG + chr3_1:76689519-76689538 None:intergenic 30.0%
! TGAGTAATTTCTGAAGATTG+CGG + chr3_1:76689555-76689574 None:intergenic 30.0%
TGAAAAACAGCTAGAAATGA+TGG - chr3_1:76689620-76689639 Msa0376590:intron 30.0%
! AATGATGGAAACTTTGATTG+AGG - chr3_1:76689635-76689654 Msa0376590:intron 30.0%
GTCAAATTGATCATGATTCA+AGG + chr3_1:76689685-76689704 None:intergenic 30.0%
! AAGAAGAAAAGCATGTTTGT+CGG - chr3_1:76689745-76689764 Msa0376590:intron 30.0%
ATTCTAATTGAAAGGTTGAC+AGG - chr3_1:76689942-76689961 Msa0376590:intron 30.0%
ATTAGTGAAGATAGCAAAGT+TGG - chr3_1:76689993-76690012 Msa0376590:intron 30.0%
!! TATTTTTATGCCTTCTGCAT+TGG - chr3_1:76690131-76690150 Msa0376590:CDS 30.0%
!! TATTTTTATGCCTTCTGCAT+TGG - chr3_1:76690131-76690150 Msa0376590:CDS 30.0%
TTTGCAATACCAAATGAAGT+TGG + chr3_1:76690429-76690448 None:intergenic 30.0%
!!! ATCAACACTAGAGCATTTTT+TGG - chr3_1:76690550-76690569 Msa0376590:CDS 30.0%
CAAAGATATATTGTTGCAAC+AGG - chr3_1:76690590-76690609 Msa0376590:CDS 30.0%
!! AAGATTGTTTCTGGATTTGT+TGG - chr3_1:76690638-76690657 Msa0376590:CDS 30.0%
! AACGATTTTCTGACAGTATA+AGG - chr3_1:76690702-76690721 Msa0376590:CDS 30.0%
TTCAAAGAGGTTTAGAAGTT+CGG - chr3_1:76690741-76690760 Msa0376590:CDS 30.0%
AAGGAATGATATGTTTGAGA+AGG - chr3_1:76690807-76690826 Msa0376590:CDS 30.0%
ACAAATAAACACTTGAGGAA+AGG + chr3_1:76690871-76690890 None:intergenic 30.0%
!! CAACAATGTGAGATTTTGAT+TGG - chr3_1:76691050-76691069 Msa0376590:CDS 30.0%
GATTGTGTGGAAAGTTCAAA+AGG - chr3_1:76687840-76687859 Msa0376590:three_prime_UTR 35.0%
CAAAAGGAAGTGATAAATGG+GGG - chr3_1:76687856-76687875 Msa0376590:three_prime_UTR 35.0%
TCAGAAATTGAAGGAAATGG+AGG - chr3_1:76688095-76688114 Msa0376590:CDS 35.0%
CAGAAATTGAAGGAAATGGA+GGG - chr3_1:76688096-76688115 Msa0376590:CDS 35.0%
AGAAGAGGAGAAAAAGAGAA+AGG - chr3_1:76688149-76688168 Msa0376590:CDS 35.0%
!! AGAGGAACTTATTTCTGTCA+TGG - chr3_1:76688359-76688378 Msa0376590:intron 35.0%
GGAGATTGCAAAATTTCACA+AGG - chr3_1:76688425-76688444 Msa0376590:intron 35.0%
! AGATTTTGTCAGCAATGTTG+AGG - chr3_1:76688466-76688485 Msa0376590:intron 35.0%
AAAGCAAATGCTGTTGAAAG+AGG - chr3_1:76688512-76688531 Msa0376590:intron 35.0%
!! GATGAACTTGAGTTCTAGAA+AGG - chr3_1:76688638-76688657 Msa0376590:intron 35.0%
AGACCAAATAGGAGACAAAA+GGG + chr3_1:76689172-76689191 None:intergenic 35.0%
ATGCTAAACGTTTGGAAGAT+TGG - chr3_1:76689208-76689227 Msa0376590:CDS 35.0%
TGCTAAACGTTTGGAAGATT+GGG - chr3_1:76689209-76689228 Msa0376590:CDS 35.0%
ATGCAACTCTGATTGAACAA+AGG - chr3_1:76689253-76689272 Msa0376590:CDS 35.0%
! ATGCTTTTGCAGAACAAATG+AGG - chr3_1:76689292-76689311 Msa0376590:CDS 35.0%
GATCAAAGATGAGAAGTTAG+AGG - chr3_1:76689314-76689333 Msa0376590:CDS 35.0%
!! ATGAGAAGTTAGAGGCATTT+AGG - chr3_1:76689322-76689341 Msa0376590:CDS 35.0%
GAGACATGACAAGATGAAAT+TGG - chr3_1:76689425-76689444 Msa0376590:CDS 35.0%
GAAATTGGAGAGCTTATTGT+TGG - chr3_1:76689440-76689459 Msa0376590:CDS 35.0%
!!! GCCTCAATTTTGAAGCAAAT+TGG + chr3_1:76689497-76689516 None:intergenic 35.0%
AAATTACTCAAGATCCTGTC+TGG - chr3_1:76689565-76689584 Msa0376590:intron 35.0%
AAGATTGTGAAGAGAAAACC+AGG - chr3_1:76689597-76689616 Msa0376590:intron 35.0%
!!! ATTTCTAGCTGTTTTTCACC+TGG + chr3_1:76689618-76689637 None:intergenic 35.0%
GATTGAGGAAGTTTGTGAAA+AGG - chr3_1:76689650-76689669 Msa0376590:intron 35.0%
! AGAAGAAAAGCATGTTTGTC+GGG - chr3_1:76689746-76689765 Msa0376590:intron 35.0%
GCATCAATTTCTCTGTGATT+TGG + chr3_1:76689804-76689823 None:intergenic 35.0%
ATTGATGCTGCTGAAAAGAT+AGG - chr3_1:76689816-76689835 Msa0376590:intron 35.0%
ATGATGCAAAACAATTCCAG+TGG - chr3_1:76689859-76689878 Msa0376590:intron 35.0%
AAAACAATTCCAGTGGAAGA+TGG - chr3_1:76689866-76689885 Msa0376590:intron 35.0%
GAGTATCTTACAAGATCAAG+AGG - chr3_1:76689904-76689923 Msa0376590:intron 35.0%
TACTTGTGTCCAACTTCATT+TGG - chr3_1:76690417-76690436 Msa0376590:CDS 35.0%
!!! AACACTAGAGCATTTTTTGG+AGG - chr3_1:76690553-76690572 Msa0376590:CDS 35.0%
CTATTCCATGAAGTTCAAAG+AGG - chr3_1:76690728-76690747 Msa0376590:CDS 35.0%
CTAAACCTCTTTGAACTTCA+TGG + chr3_1:76690736-76690755 None:intergenic 35.0%
AGAATTATAGGTGACCTTGA+GGG - chr3_1:76690770-76690789 Msa0376590:CDS 35.0%
GTTTGAGAAGGTAGCAATAA+TGG - chr3_1:76690819-76690838 Msa0376590:CDS 35.0%
!! AAAGCTGAAAAGTGCTGAGA+TGG - chr3_1:76687885-76687904 Msa0376590:three_prime_UTR 40.0%
! AAAGCTGGTTTAGCGAAAGA+AGG - chr3_1:76687989-76688008 Msa0376590:CDS 40.0%
AGGAAACTTCGACAACAGAT+TGG - chr3_1:76688009-76688028 Msa0376590:CDS 40.0%
ATTGAAGGAAATGGAGGGTT+TGG - chr3_1:76688101-76688120 Msa0376590:CDS 40.0%
GAGAAAGGAGCTAGAAGAAA+AGG - chr3_1:76688164-76688183 Msa0376590:CDS 40.0%
AGAGAATCTGCTAAACGTGA+AGG - chr3_1:76688219-76688238 Msa0376590:CDS 40.0%
!! AAGAGCATTCTTCTGATCTC+AGG - chr3_1:76688244-76688263 Msa0376590:CDS 40.0%
CAAAACTGCTTTCATTGAGC+TGG - chr3_1:76688272-76688291 Msa0376590:intron 40.0%
GTTCAGCTTCAAGATGTCTT+TGG + chr3_1:76688305-76688324 None:intergenic 40.0%
AGACATCTTGAAGCTGAACT+CGG - chr3_1:76688306-76688325 Msa0376590:intron 40.0%
GCATTTGGATGCTACAAAAG+AGG - chr3_1:76688341-76688360 Msa0376590:intron 40.0%
TTCTGTCATGGAGAACAAAG+AGG - chr3_1:76688371-76688390 Msa0376590:intron 40.0%
! CAAAGAGGAGTCTGATTTGA+TGG - chr3_1:76688386-76688405 Msa0376590:intron 40.0%
ATGCAGCATAGTTCTTCAAC+AGG - chr3_1:76688684-76688703 Msa0376590:CDS 40.0%
GGCAAGTAGTGATCAGAAAT+AGG + chr3_1:76688747-76688766 None:intergenic 40.0%
! TGACCCTTTTGTCTCCTATT+TGG - chr3_1:76689166-76689185 Msa0376590:CDS 40.0%
GAGACCAAATAGGAGACAAA+AGG + chr3_1:76689173-76689192 None:intergenic 40.0%
ACGTTTAGCATTAGCAGGAA+TGG + chr3_1:76689199-76689218 None:intergenic 40.0%
TCCTGCTAATGCTAAACGTT+TGG - chr3_1:76689200-76689219 Msa0376590:CDS 40.0%
TCCAAACGTTTAGCATTAGC+AGG + chr3_1:76689204-76689223 None:intergenic 40.0%
!! AGAAGTTAGAGGCATTTAGG+TGG - chr3_1:76689325-76689344 Msa0376590:CDS 40.0%
TGAGGAAGTTTGTGAAAAGG+AGG - chr3_1:76689653-76689672 Msa0376590:intron 40.0%
TTTGGACTTTGATACTGCAC+AGG + chr3_1:76689786-76689805 None:intergenic 40.0%
! AAAGATCGTCGGTCTTTTCT+TGG + chr3_1:76690082-76690101 None:intergenic 40.0%
CATTCGTTTGCAAAGATCGT+CGG + chr3_1:76690093-76690112 None:intergenic 40.0%
TGGTATTGCAAAGTTGAGCA+TGG - chr3_1:76690437-76690456 Msa0376590:CDS 40.0%
GGTATTGCAAAGTTGAGCAT+GGG - chr3_1:76690438-76690457 Msa0376590:CDS 40.0%
AATGTCCTCTATGCAAATCG+CGG - chr3_1:76690494-76690513 Msa0376590:CDS 40.0%
!! TGTTTCTGGATTTGTTGGAG+TGG - chr3_1:76690643-76690662 Msa0376590:CDS 40.0%
CTCAAGGTCACCTATAATTC+TGG + chr3_1:76690771-76690790 None:intergenic 40.0%
CAGAATTATAGGTGACCTTG+AGG - chr3_1:76690769-76690788 Msa0376590:CDS 40.0%
GCATGTTATCCAAGACACTT+AGG - chr3_1:76691084-76691103 Msa0376590:CDS 40.0%
!! TCAAGGAAGTGCACAGCTTT+TGG - chr3_1:76687813-76687832 Msa0376590:three_prime_UTR 45.0%
!! CAAGGAAGTGCACAGCTTTT+GGG - chr3_1:76687814-76687833 Msa0376590:three_prime_UTR 45.0%
!! AAGGAAGTGCACAGCTTTTG+GGG - chr3_1:76687815-76687834 Msa0376590:three_prime_UTR 45.0%
!!! AGCTTTTGGGGTTGATTGTG+TGG - chr3_1:76687827-76687846 Msa0376590:three_prime_UTR 45.0%
TTGCTGCACAAGAACAAAGC+TGG - chr3_1:76687974-76687993 Msa0376590:CDS 45.0%
GAAGCATGCTGAGCATGAAA+CGG - chr3_1:76688557-76688576 Msa0376590:intron 45.0%
CTGAGCATGAAACGGAAAAG+TGG - chr3_1:76688565-76688584 Msa0376590:intron 45.0%
AAGTGGAGAGAAGCTTCAGA+AGG - chr3_1:76688582-76688601 Msa0376590:intron 45.0%
! GATGTTTTCCCTAGTGCAAG+AGG - chr3_1:76688660-76688679 Msa0376590:CDS 45.0%
GGAATGGCTAGAGACCAAAT+AGG + chr3_1:76689183-76689202 None:intergenic 45.0%
AAAGCAGCTTCAGTCACACT+TGG - chr3_1:76689374-76689393 Msa0376590:CDS 45.0%
GAGCTTATTGTTGGAGAGAG+TGG - chr3_1:76689449-76689468 Msa0376590:CDS 45.0%
ATCTTGACTCTAGACCAGAC+AGG + chr3_1:76689582-76689601 None:intergenic 45.0%
! AGAAAAGCATGTTTGTCGGG+AGG - chr3_1:76689749-76689768 Msa0376590:intron 45.0%
CTTTGATACTGCACAGGAGT+AGG + chr3_1:76689780-76689799 None:intergenic 45.0%
CATGAAGATCCATCTTCCAC+TGG + chr3_1:76689878-76689897 None:intergenic 45.0%
AAGATGGATCTTCATGCGCT+TGG - chr3_1:76689882-76689901 Msa0376590:intron 45.0%
CGACGATCTTTGCAAACGAA+TGG - chr3_1:76690091-76690110 Msa0376590:CDS 45.0%
TGATTAGACGCCAATGCAGA+AGG + chr3_1:76690144-76690163 None:intergenic 45.0%
ACATTAGACGCCAATGCAGA+AGG + chr3_1:76690191-76690210 None:intergenic 45.0%
! TGAGTCGTGTGAGTCCTTTT+TGG - chr3_1:76690326-76690345 Msa0376590:CDS 45.0%
! GAAGAGATGGAGAAAAGTGC+TGG - chr3_1:76690668-76690687 Msa0376590:CDS 45.0%
GTTCGGACAGCCAGAATTAT+AGG - chr3_1:76690758-76690777 Msa0376590:CDS 45.0%
!! AAAAAAAAAAAAAAACTAAA+CGG - chr3_1:76690993-76691012 Msa0376590:CDS 5.0%
GGAAGTGATAAATGGGGGAG+AGG - chr3_1:76687861-76687880 Msa0376590:three_prime_UTR 50.0%
GAAGGAAATGGAGGGTTTGG+TGG - chr3_1:76688104-76688123 Msa0376590:CDS 50.0%
! CGGTCGTGCTGTTAAGCATT+TGG - chr3_1:76688326-76688345 Msa0376590:intron 50.0%
CAGCTTCAGTCACACTTGGA+GGG - chr3_1:76689378-76689397 Msa0376590:CDS 50.0%
TCAGTCACACTTGGAGGGAT+TGG - chr3_1:76689383-76689402 Msa0376590:CDS 50.0%
! ACACTTGGAGGGATTGGTGA+AGG - chr3_1:76689389-76689408 Msa0376590:CDS 50.0%
GTTCTCCGCGATTTGCATAG+AGG + chr3_1:76690502-76690521 None:intergenic 50.0%
TGTTGGAGTGGCAGAAGAGA+TGG - chr3_1:76690655-76690674 Msa0376590:CDS 50.0%
AGGTGACCTTGAGGGAACAT+TGG - chr3_1:76690778-76690797 Msa0376590:CDS 50.0%
!! GGAAATGGAGGGTTTGGTGG+AGG - chr3_1:76688107-76688126 Msa0376590:CDS 55.0%
GCTGCATGCCTCTTGCACTA+GGG + chr3_1:76688671-76688690 None:intergenic 55.0%
TGCTGCATGCCTCTTGCACT+AGG + chr3_1:76688672-76688691 None:intergenic 55.0%
GGGTGAGAGCTGAGACAGAA+AGG - chr3_1:76689229-76689248 Msa0376590:CDS 55.0%
GCAGCTTCAGTCACACTTGG+AGG - chr3_1:76689377-76689396 Msa0376590:CDS 55.0%
CACGAGCCAATGTTCCCTCA+AGG + chr3_1:76690787-76690806 None:intergenic 55.0%
!! GAGGGAACATTGGCTCGTGA+AGG - chr3_1:76690788-76690807 Msa0376590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76687655 76691113 76687655 ID=Msa0376590;Name=Msa0376590
chr3_1 mRNA 76687655 76691113 76687655 ID=Msa0376590-mRNA-1;Parent=Msa0376590;Name=Msa0376590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.66|1|1|1|3|281|766
chr3_1 exon 76687655 76688280 76687655 ID=Msa0376590-mRNA-1:exon:18288;Parent=Msa0376590-mRNA-1
chr3_1 exon 76688656 76689572 76688656 ID=Msa0376590-mRNA-1:exon:18287;Parent=Msa0376590-mRNA-1
chr3_1 exon 76690075 76691113 76690075 ID=Msa0376590-mRNA-1:exon:18286;Parent=Msa0376590-mRNA-1
chr3_1 CDS 76690075 76691113 76690075 ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1 CDS 76688656 76689572 76688656 ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1 CDS 76687936 76688280 76687936 ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1 three_prime_UTR 76687655 76687935 76687655 ID=Msa0376590-mRNA-1:three_prime_utr;Parent=Msa0376590-mRNA-1
Gene Sequence

>Msa0376590

ATGGATAGAATTGTGTATAAAAAGAGTGATAATATTGATGATGATGGAATGTATCCAATATATTTTGGTGTTTCTTGTGCATTCTTAGCACTTCAAGTTATTAGAAAACCACATGTTGAAGTTGAGAAAAATTTGACTGAAATTGTTGAAACTATGCTTCAAGGAAGTGCACAGCTTTTGGGGTTGATTGTGTGGAAAGTTCAAAAGGAAGTGATAAATGGGGGAGAGGAAAAGCTGAAAAGTGCTGAGATGGAAATTGAGAATTTGAAAAAGATAAGACATGAAGATGCAAAAGCAAATGAAAAAGTTGTAGGGATTTTTGCTGCACAAGAACAAAGCTGGTTTAGCGAAAGAAGGAAACTTCGACAACAGATTGGTGCTCTATTGAACGAGTTAAGAGTGTTTGAGAAAAAAAGGGACTTAGCTATATCTGAATTGAATCAGAAATTGAAGGAAATGGAGGGTTTGGTGGAGGAAAAAGATAAGAAGATTGAAGAAGAGGAGAAAAAGAGAAAGGAGCTAGAAGAAAAGGCGAAAAAAGCTGAAAAAGATGCAGAAGAATTGAGAGAATCTGCTAAACGTGAAGGTCAAGAGCATTCTTCTGATCTCAGGAAACACAAAACTGCTTTCATTGAGCTGGTTTCAAACCAAAGACATCTTGAAGCTGAACTCGGTCGTGCTGTTAAGCATTTGGATGCTACAAAAGAGGAACTTATTTCTGTCATGGAGAACAAAGAGGAGTCTGATTTGATGGTTCAGAAATTAACTTTGGAGATTGCAAAATTTCACAAGGATTTGGAACAAAAAGATAAGATTTTGTCAGCAATGTTGAGGAAATCTAAACTTGATACTGCAGAAAAGCAAATGCTGTTGAAAGAGGTTAAGTTATCAAAGGCTAGAAGGAAGCATGCTGAGCATGAAACGGAAAAGTGGAGAGAAGCTTCAGAAGGAAAACATGACAGACATTCCTTTAAAAATATGTTGATGAACTTGAGTTCTAGAAAGGATGTTTTCCCTAGTGCAAGAGGCATGCAGCATACCATTCCTGCTAATGCTAAACGTTTGGAAGATTGGGTGAGAGCTGAGACAGAAAGGTATGCAACTCTGATTGAACAAAGGCATCACATAGAGTTAGATGCTTTTGCAGAACAAATGAGGATCAAAGATGAGAAGTTAGAGGCATTTAGGTGGCAATTGTTGAGAACAGAATTAGAAACAAAGCAGCTTCAGTCACACTTGGAGGGATTGGTGAAGGATGTGACACAGCTGAGACATGACAAGATGAAATTGGAGAGCTTATTGTTGGAGAGAGTGGATGAAATTAATTCTCTGAAAGACCAATTTGCTTCAAAATTGAGGCCTTCAAACTGCTTTAGAAACAACTCTAATCTGTCTCCGCAATCTTCAGAAATTACTCAAGATCCTGTCTGGTCTAGAGTCAAGATTGTGAAGAGAAAACCAGGTGAAAAACAGCTAGAAATGATGGAAACTTTGATTGAGGAAGTTTGTGAAAAGGAGGTGCAGCCCTTGAATCATGATCAATTTGACGATGAGAATTCACAAGTTCAATCTCCAGAAAATAAGATTGAAGAAGAAAAGCATGTTTGTCGGGAGGATAATCCTACTCCTGTGCAGTATCAAAGTCCAAATCACAGAGAAATTGATGCTGCTGAAAAGATAGGTTCTACTAGCAAGCCCTTTAATGATGCAAAACAATTCCAGTGGAAGATGGATCTTCATGCGCTTGGAGTATCTTACAAGATCAAGAGGCTTAAGCAGCAACTAATTCTAATTGAAAGGTTGACAGGAATGCAAAACAATGATGAACATTCAGAAATTAGTGAAGATAGCAAAGTTGGTATGAAGACTTATCTTTCCTTGATTACTTTGCTGAATAAACAAATTGGAAGATATCAATCTCTCCAAGAAAAGACCGACGATCTTTGCAAACGAATGCAAGAGAATGTCCTCTATGCAAATCGCGGAGAACTGAATAATGCAAGAAAAAAGGAGAAAACATCAACACTAGAGCATTTTTTGGAGGAGACATTTCAATTACAAAGATATATTGTTGCAACAGGACAAAAATTGTTTGAAATTCAATCAAAGATTGTTTCTGGATTTGTTGGAGTGGCAGAAGAGATGGAGAAAAGTGCTGGAATTGACATGAAACGATTTTCTGACAGTATAAGGAATCTATTCCATGAAGTTCAAAGAGGTTTAGAAGTTCGGACAGCCAGAATTATAGGTGACCTTGAGGGAACATTGGCTCGTGAAGGAATGATATGTTTGAGAAGGTAG

Protein sequence

>Msa0376590

MDRIVYKKSDNIDDDGMYPIYFGVSCAFLALQVIRKPHVEVEKNLTEIVETMLQGSAQLLGLIVWKVQKEVINGGEEKLKSAEMEIENLKKIRHEDAKANEKVVGIFAAQEQSWFSERRKLRQQIGALLNELRVFEKKRDLAISELNQKLKEMEGLVEEKDKKIEEEEKKRKELEEKAKKAEKDAEELRESAKREGQEHSSDLRKHKTAFIELVSNQRHLEAELGRAVKHLDATKEELISVMENKEESDLMVQKLTLEIAKFHKDLEQKDKILSAMLRKSKLDTAEKQMLLKEVKLSKARRKHAEHETEKWREASEGKHDRHSFKNMLMNLSSRKDVFPSARGMQHTIPANAKRLEDWVRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVKDVTQLRHDKMKLESLLLERVDEINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWSRVKIVKRKPGEKQLEMMETLIEEVCEKEVQPLNHDQFDDENSQVQSPENKIEEEKHVCREDNPTPVQYQSPNHREIDAAEKIGSTSKPFNDAKQFQWKMDLHALGVSYKIKRLKQQLILIERLTGMQNNDEHSEISEDSKVGMKTYLSLITLLNKQIGRYQSLQEKTDDLCKRMQENVLYANRGELNNARKKEKTSTLEHFLEETFQLQRYIVATGQKLFEIQSKIVSGFVGVAEEMEKSAGIDMKRFSDSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR*