AlfalfaGEDB | Msa0376590

M. sativa cultivar zhongmu-4 / Msa0376590

KEGG: K10352
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376590	XP_003602264.1	93.476	797	21	1	1	766	1	797	0.0	1505

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376590	G7J7F4	93.476	797	21	1	1	766	1	797	0.0	1505

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0376590	-0.848304	6.675044e-60	-8.615850e-47
Msa0001790	Msa0376590	0.824164	9.359596e-54	-8.615850e-47
Msa0002460	Msa0376590	0.800816	1.206695e-48	-8.615850e-47
Msa0003300	Msa0376590	0.818460	1.937709e-52	-8.615850e-47
Msa0004880	Msa0376590	0.807988	3.861528e-50	-8.615850e-47
Msa0006110	Msa0376590	0.853991	1.657131e-61	-8.615850e-47
Msa0006390	Msa0376590	0.808921	2.442548e-50	-8.615850e-47
Msa0006400	Msa0376590	0.808548	2.934794e-50	-8.615850e-47
Msa0007080	Msa0376590	0.822932	1.818237e-53	-8.615850e-47
Msa0011170	Msa0376590	0.820462	6.772245e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376590	MtrunA17_Chr3g0126961	93.476	797	21	1	1	766	1	797	0.0	1505
Msa0376590	MtrunA17_Chr5g0409191	37.162	148	85	2	618	765	240	379	1.43e-17	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376590	AT5G53020.3	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.4	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.5	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.1	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.8	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.10	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.9	43.031	739	347	15	59	766	17	712	2.33e-150	456
Msa0376590	AT5G53020.6	42.625	739	351	14	59	766	17	713	7.00e-150	455
Msa0376590	AT5G53020.7	42.625	739	351	14	59	766	17	713	7.00e-150	455
Msa0376590	AT5G53020.2	43.551	721	333	15	77	766	26	703	3.16e-149	453

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Find 122 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTCCAGTGGAAGA+TGG	0.549249	3_1:-76688880	Msa0376590:CDS
AAAGCAAATGCTGTTGAAAG+AGG	0.523700	3_1:-76690234	Msa0376590:CDS
AAAGCAGCTTCAGTCACACT+TGG	0.601610	3_1:-76689372	Msa0376590:CDS
AAAGCTGAAAAGTGCTGAGA+TGG	0.516211	3_1:-76690861	Msa0376590:CDS
AAAGCTGGTTTAGCGAAAGA+AGG	0.572971	3_1:-76690757	Msa0376590:CDS
AAATTACTCAAGATCCTGTC+TGG	0.496376	3_1:-76689181	Msa0376590:CDS
AAGAAGAAAAGCATGTTTGT+CGG	0.491398	3_1:-76689001	Msa0376590:CDS
AAGAGCATTCTTCTGATCTC+AGG	0.461075	3_1:-76690502	Msa0376590:CDS
AAGATGGATCTTCATGCGCT+TGG	0.528734	3_1:-76688864	Msa0376590:CDS
AAGATTGTGAAGAGAAAACC+AGG	0.612078	3_1:-76689149	Msa0376590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTTGAAACTATGCTTCA+AGG	-	chr3_1:76687796-76687815	Msa0376590:three_prime_UTR	30.0%
GTTCAAAAGGAAGTGATAAA+TGG	-	chr3_1:76687853-76687872	Msa0376590:three_prime_UTR	30.0%
TCAAAAGGAAGTGATAAATG+GGG	-	chr3_1:76687855-76687874	Msa0376590:three_prime_UTR	30.0%
GAATCAGAAATTGAAGGAAA+TGG	-	chr3_1:76688092-76688111	Msa0376590:CDS	30.0%
AGATAAGAAGATTGAAGAAG+AGG	-	chr3_1:76688134-76688153	Msa0376590:CDS	30.0%
GATGGTTCAGAAATTAACTT+TGG	-	chr3_1:76688404-76688423	Msa0376590:intron	30.0%
TGCAAAATTTCACAAGGATT+TGG	-	chr3_1:76688431-76688450	Msa0376590:intron	30.0%
GAAAGAGGTTAAGTTATCAA+AGG	-	chr3_1:76688527-76688546	Msa0376590:intron	30.0%
TTAAGTTATCAAAGGCTAGA+AGG	-	chr3_1:76688535-76688554	Msa0376590:intron	30.0%
CATAAGTCTTCATTTCTTTG+TGG	+	chr3_1:76688768-76688787	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	76687655	76691113	76687655	ID=Msa0376590;Name=Msa0376590
chr3_1	mRNA	76687655	76691113	76687655	ID=Msa0376590-mRNA-1;Parent=Msa0376590;Name=Msa0376590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|281\|766
chr3_1	exon	76687655	76688280	76687655	ID=Msa0376590-mRNA-1:exon:18288;Parent=Msa0376590-mRNA-1
chr3_1	exon	76688656	76689572	76688656	ID=Msa0376590-mRNA-1:exon:18287;Parent=Msa0376590-mRNA-1
chr3_1	exon	76690075	76691113	76690075	ID=Msa0376590-mRNA-1:exon:18286;Parent=Msa0376590-mRNA-1
chr3_1	CDS	76690075	76691113	76690075	ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1	CDS	76688656	76689572	76688656	ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1	CDS	76687936	76688280	76687936	ID=Msa0376590-mRNA-1:cds;Parent=Msa0376590-mRNA-1
chr3_1	three_prime_UTR	76687655	76687935	76687655	ID=Msa0376590-mRNA-1:three_prime_utr;Parent=Msa0376590-mRNA-1

Gene Sequence

>Msa0376590

ATGGATAGAATTGTGTATAAAAAGAGTGATAATATTGATGATGATGGAATGTATCCAATATATTTTGGTGTTTCTTGTGCATTCTTAGCACTTCAAGTTATTAGAAAACCACATGTTGAAGTTGAGAAAAATTTGACTGAAATTGTTGAAACTATGCTTCAAGGAAGTGCACAGCTTTTGGGGTTGATTGTGTGGAAAGTTCAAAAGGAAGTGATAAATGGGGGAGAGGAAAAGCTGAAAAGTGCTGAGATGGAAATTGAGAATTTGAAAAAGATAAGACATGAAGATGCAAAAGCAAATGAAAAAGTTGTAGGGATTTTTGCTGCACAAGAACAAAGCTGGTTTAGCGAAAGAAGGAAACTTCGACAACAGATTGGTGCTCTATTGAACGAGTTAAGAGTGTTTGAGAAAAAAAGGGACTTAGCTATATCTGAATTGAATCAGAAATTGAAGGAAATGGAGGGTTTGGTGGAGGAAAAAGATAAGAAGATTGAAGAAGAGGAGAAAAAGAGAAAGGAGCTAGAAGAAAAGGCGAAAAAAGCTGAAAAAGATGCAGAAGAATTGAGAGAATCTGCTAAACGTGAAGGTCAAGAGCATTCTTCTGATCTCAGGAAACACAAAACTGCTTTCATTGAGCTGGTTTCAAACCAAAGACATCTTGAAGCTGAACTCGGTCGTGCTGTTAAGCATTTGGATGCTACAAAAGAGGAACTTATTTCTGTCATGGAGAACAAAGAGGAGTCTGATTTGATGGTTCAGAAATTAACTTTGGAGATTGCAAAATTTCACAAGGATTTGGAACAAAAAGATAAGATTTTGTCAGCAATGTTGAGGAAATCTAAACTTGATACTGCAGAAAAGCAAATGCTGTTGAAAGAGGTTAAGTTATCAAAGGCTAGAAGGAAGCATGCTGAGCATGAAACGGAAAAGTGGAGAGAAGCTTCAGAAGGAAAACATGACAGACATTCCTTTAAAAATATGTTGATGAACTTGAGTTCTAGAAAGGATGTTTTCCCTAGTGCAAGAGGCATGCAGCATACCATTCCTGCTAATGCTAAACGTTTGGAAGATTGGGTGAGAGCTGAGACAGAAAGGTATGCAACTCTGATTGAACAAAGGCATCACATAGAGTTAGATGCTTTTGCAGAACAAATGAGGATCAAAGATGAGAAGTTAGAGGCATTTAGGTGGCAATTGTTGAGAACAGAATTAGAAACAAAGCAGCTTCAGTCACACTTGGAGGGATTGGTGAAGGATGTGACACAGCTGAGACATGACAAGATGAAATTGGAGAGCTTATTGTTGGAGAGAGTGGATGAAATTAATTCTCTGAAAGACCAATTTGCTTCAAAATTGAGGCCTTCAAACTGCTTTAGAAACAACTCTAATCTGTCTCCGCAATCTTCAGAAATTACTCAAGATCCTGTCTGGTCTAGAGTCAAGATTGTGAAGAGAAAACCAGGTGAAAAACAGCTAGAAATGATGGAAACTTTGATTGAGGAAGTTTGTGAAAAGGAGGTGCAGCCCTTGAATCATGATCAATTTGACGATGAGAATTCACAAGTTCAATCTCCAGAAAATAAGATTGAAGAAGAAAAGCATGTTTGTCGGGAGGATAATCCTACTCCTGTGCAGTATCAAAGTCCAAATCACAGAGAAATTGATGCTGCTGAAAAGATAGGTTCTACTAGCAAGCCCTTTAATGATGCAAAACAATTCCAGTGGAAGATGGATCTTCATGCGCTTGGAGTATCTTACAAGATCAAGAGGCTTAAGCAGCAACTAATTCTAATTGAAAGGTTGACAGGAATGCAAAACAATGATGAACATTCAGAAATTAGTGAAGATAGCAAAGTTGGTATGAAGACTTATCTTTCCTTGATTACTTTGCTGAATAAACAAATTGGAAGATATCAATCTCTCCAAGAAAAGACCGACGATCTTTGCAAACGAATGCAAGAGAATGTCCTCTATGCAAATCGCGGAGAACTGAATAATGCAAGAAAAAAGGAGAAAACATCAACACTAGAGCATTTTTTGGAGGAGACATTTCAATTACAAAGATATATTGTTGCAACAGGACAAAAATTGTTTGAAATTCAATCAAAGATTGTTTCTGGATTTGTTGGAGTGGCAGAAGAGATGGAGAAAAGTGCTGGAATTGACATGAAACGATTTTCTGACAGTATAAGGAATCTATTCCATGAAGTTCAAAGAGGTTTAGAAGTTCGGACAGCCAGAATTATAGGTGACCTTGAGGGAACATTGGCTCGTGAAGGAATGATATGTTTGAGAAGGTAG

Protein sequence

>Msa0376590

MDRIVYKKSDNIDDDGMYPIYFGVSCAFLALQVIRKPHVEVEKNLTEIVETMLQGSAQLLGLIVWKVQKEVINGGEEKLKSAEMEIENLKKIRHEDAKANEKVVGIFAAQEQSWFSERRKLRQQIGALLNELRVFEKKRDLAISELNQKLKEMEGLVEEKDKKIEEEEKKRKELEEKAKKAEKDAEELRESAKREGQEHSSDLRKHKTAFIELVSNQRHLEAELGRAVKHLDATKEELISVMENKEESDLMVQKLTLEIAKFHKDLEQKDKILSAMLRKSKLDTAEKQMLLKEVKLSKARRKHAEHETEKWREASEGKHDRHSFKNMLMNLSSRKDVFPSARGMQHTIPANAKRLEDWVRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVKDVTQLRHDKMKLESLLLERVDEINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWSRVKIVKRKPGEKQLEMMETLIEEVCEKEVQPLNHDQFDDENSQVQSPENKIEEEKHVCREDNPTPVQYQSPNHREIDAAEKIGSTSKPFNDAKQFQWKMDLHALGVSYKIKRLKQQLILIERLTGMQNNDEHSEISEDSKVGMKTYLSLITLLNKQIGRYQSLQEKTDDLCKRMQENVLYANRGELNNARKKEKTSTLEHFLEETFQLQRYIVATGQKLFEIQSKIVSGFVGVAEEMEKSAGIDMKRFSDSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR*